Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SKI	6497	broad.mit.edu	37	1	2160628	2160628	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:2160628G>C	uc001aja.3	+	1	495	c.423G>C	c.(421-423)GCG>GCC	p.A141A		NM_003036	NP_003027	P12755	SKI_HUMAN	v-ski sarcoma viral oncogene homolog	141					anterior/posterior axis specification|BMP signaling pathway|bone morphogenesis|cell motility|cell proliferation|embryonic limb morphogenesis|face morphogenesis|lens morphogenesis in camera-type eye|myelination in peripheral nervous system|myotube differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of fibroblast proliferation|negative regulation of osteoblast differentiation|negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|neural tube closure|nose morphogenesis|olfactory bulb development|palate development|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein homotrimerization|regulation of apoptosis|retina development in camera-type eye|skeletal muscle fiber development|SMAD protein signal transduction|somatic stem cell maintenance|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|PML body|transcription factor complex|transcriptional repressor complex	histone deacetylase inhibitor activity|nucleotide binding|protein domain specific binding|protein kinase binding|repressing transcription factor binding|SMAD binding|transcription corepressor activity|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(77;0.000139)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)			Epithelial(90;2.14e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.72e-29)|GBM - Glioblastoma multiforme(42;2.45e-08)|Colorectal(212;5.33e-05)|COAD - Colon adenocarcinoma(227;0.000228)|Kidney(185;0.00268)|BRCA - Breast invasive adenocarcinoma(365;0.00471)|STAD - Stomach adenocarcinoma(132;0.0147)|KIRC - Kidney renal clear cell carcinoma(229;0.0385)|Lung(427;0.207)		AGATCAACGCGGTGTGCGACG	0.632		NA											12	3					0	0	0	0
PIK3CD	5293	broad.mit.edu	37	1	9775652	9775652	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:9775652C>T	uc001aqb.3	+	4	403	c.195C>T	c.(193-195)CCC>CCT	p.P65P	PIK3CD_uc001aqa.2_Silent_p.P65P|PIK3CD_uc010oaf.1_Silent_p.P65P|PIK3CD_uc001aqe.3_Silent_p.P65P	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	65					phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		TCAGTGGCCCCGAGGCCTATG	0.647		NA											10	21					0	0	0	0
PIK3CD	5293	broad.mit.edu	37	1	9776604	9776604	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:9776604C>T	uc001aqb.3	+	6	915	c.707C>T	c.(706-708)CCG>CTG	p.P236L	PIK3CD_uc010oaf.1_Missense_Mutation_p.P236L|PIK3CD_uc001aqe.3_Missense_Mutation_p.P236L	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	236					phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		GTGGAGCAGCCGGAAGACTAC	0.642		NA											3	4					0	0	0	0
PLOD1	5351	broad.mit.edu	37	1	12016977	12016977	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:12016977A>T	uc001atm.2	+	7	738	c.647A>T	c.(646-648)GAG>GTG	p.E216V	PLOD1_uc010obb.1_Missense_Mutation_p.E263V	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	216					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCCCCAGATGAGGTCGTGCTC	0.423		NA											17	13					0	0	0	0
NBPF1	55672	broad.mit.edu	37	1	16901659	16901659	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:16901659C>A	uc009vos.1	-	20	3073	c.2185G>T	c.(2185-2187)GCC>TCC	p.A729S	NBPF1_uc009vot.1_Missense_Mutation_p.A187S|NBPF1_uc001ayz.1_Missense_Mutation_p.A187S|NBPF1_uc010oce.1_Missense_Mutation_p.A458S	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	729	NBPF 3.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TACCTGGGGGCAGACGATTTC	0.423		NA											8	200					9.7e-10	1.17e-09	1	0
C1orf94	84970	broad.mit.edu	37	1	34667770	34667770	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:34667770C>T	uc001bxs.3	+	4	1185	c.786C>T	c.(784-786)ACC>ACT	p.T262T	C1orf94_uc001bxt.2_Silent_p.T452T	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	262							protein binding				0		Myeloproliferative disorder(586;0.0393)				CAGCCATGACCTCAGCAACCC	0.507		NA											38	11					0	0	0	0
KTI12	112970	broad.mit.edu	37	1	52499425	52499425	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:52499425G>A	uc001ctj.1	-	1	48	c.9C>T	c.(7-9)CTC>CTT	p.L3L	TXNDC12_uc001cti.2_Intron	NM_138417	NP_612426	Q96EK9	KTI12_HUMAN	KTI12 homolog, chromatin associated	3							ATP binding			central_nervous_system(2)	2						AAAACACCACGAGCGGCATCC	0.662		NA											8	3					0	0	0	0
ELTD1	64123	broad.mit.edu	37	1	79403504	79403504	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:79403504A>T	uc001diq.3	-	6	904	c.748T>A	c.(748-750)TCA>ACA	p.S250T		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	250	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ATATCCGTTGAATTTGTATCA	0.378		NA											61	51					0	0	0	0
RTCD1	8634	broad.mit.edu	37	1	100752670	100752670	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:100752670G>A	uc001dtc.2	+	10	1128	c.910G>A	c.(910-912)GCA>ACA	p.A304T	RTCD1_uc001dtd.2_Missense_Mutation_p.A317T	NM_003729	NP_003720	O00442	RTC1_HUMAN	RNA terminal phosphate cyclase domain 1 isoform	304					RNA processing	mitochondrion|nucleoplasm	ATP binding|protein binding|RNA binding|RNA-3'-phosphate cyclase activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0513)|all cancers(265;0.0902)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)		TGTTTTCATGGCATTAGCCAA	0.338		NA											3	42					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103449722	103449723	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:103449722_103449723GG>TT	uc001dul.2	-	31	2845_2846	c.2527_2528CC>AA	c.(2527-2529)CCA>AAA	p.P843K	COL11A1_uc001duk.2_Nonsense_Mutation_p.33_34YQ>*K|COL11A1_uc001dum.2_Missense_Mutation_p.P855K|COL11A1_uc001dun.2_Missense_Mutation_p.P804K|COL11A1_uc009weh.2_Missense_Mutation_p.P727K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	843	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TGGATATCCTGGTAATCCTGGA	0.223		NA											7	9					0	0	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145273384	145273384	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:145273384G>T	uc001emn.3	+	3	608	c.238G>T	c.(238-240)GGC>TGC	p.G80C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.G80C|NOTCH2NL_uc001emo.2_Missense_Mutation_p.G80C|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	80	EGF-like 3.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						CCTGAATGGCGGCACATGCCA	0.532		NA											48	525					5.57e-27	7.78e-27	1	0
SNX27	81609	broad.mit.edu	37	1	151641106	151641106	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:151641106C>T	uc001eyn.1	+	7	1160	c.1144C>T	c.(1144-1146)CAT>TAT	p.H382Y	SNX27_uc001eyo.2_Missense_Mutation_p.H289Y|SNX27_uc001eyp.2_Missense_Mutation_p.H196Y	NM_030918	NP_112180	Q96L92	SNX27_HUMAN	sorting nexin family member 27	382					cell communication|protein transport|signal transduction	cytosol|early endosome	phosphatidylinositol binding|protein binding			ovary(2)|central_nervous_system(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTACTTCTTTCATCAGGTAGG	0.308		NA											19	45					0	0	0	0
S100A7A	338324	broad.mit.edu	37	1	153390678	153390678	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:153390678C>T	uc001fbt.1	+	2	177	c.120C>T	c.(118-120)TTC>TTT	p.F40F		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	40	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGGAGAACTTCCCCAATTTCC	0.438		NA											63	76					0	0	0	0
CD1E	913	broad.mit.edu	37	1	158326571	158326571	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:158326571G>A	uc001fse.2	+	6	1291	c.1052G>A	c.(1051-1053)GGA>GAA	p.G351E	CD1E_uc001fsd.2_3'UTR|CD1E_uc001fsk.2_Missense_Mutation_p.G261E|CD1E_uc001fsj.2_Missense_Mutation_p.G194E|CD1E_uc001fsc.2_Missense_Mutation_p.G162E|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Missense_Mutation_p.G107E|CD1E_uc001fsf.2_Missense_Mutation_p.G339E|CD1E_uc001fry.2_Missense_Mutation_p.G284E|CD1E_uc001fsg.2_3'UTR|CD1E_uc001fsh.2_Missense_Mutation_p.G150E|CD1E_uc001fsi.2_3'UTR|CD1E_uc009wsv.2_Missense_Mutation_p.G252E|CD1E_uc001frz.2_Missense_Mutation_p.G249E|CD1E_uc009wsw.2_Missense_Mutation_p.E66K	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	351					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TTTCTCATGGGAGCCAACACT	0.403		NA											45	58					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158641244	158641244	+	Splice_Site	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:158641244C>A	uc001fst.1	-	12	1688	c.1489_splice	c.e12-1	p.A497_splice		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1						actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCAGGAAGGCCTGTAGAAGAC	0.498		NA											15	36					3.41e-10	4.16e-10	1	0
OR6K2	81448	broad.mit.edu	37	1	158669573	158669573	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:158669573G>T	uc001fsu.1	-	1	870	c.870C>A	c.(868-870)ATC>ATA	p.I290I		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TCAGGCTATAGATAATGGGGT	0.403		NA											19	27					6.94e-10	8.42e-10	1	0
ARHGAP30	257106	broad.mit.edu	37	1	161039369	161039369	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:161039369G>A	uc001fxl.2	-	1	392	c.46C>T	c.(46-48)CGG>TGG	p.R16W	ARHGAP30_uc001fxk.2_Missense_Mutation_p.R16W|ARHGAP30_uc001fxm.2_5'UTR|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_5'UTR	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	16					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CCAAAAACCCGCTCCTTTGCG	0.642		NA											32	61					0	0	0	0
C1orf114	57821	broad.mit.edu	37	1	169391451	169391451	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:169391451T>A	uc001gga.1	-	3	386	c.218A>T	c.(217-219)CAG>CTG	p.Q73L	C1orf114_uc001gfz.1_Missense_Mutation_p.Q73L|C1orf114_uc009wvq.1_Missense_Mutation_p.Q73L|C1orf114_uc001ggb.2_Missense_Mutation_p.Q73L|C1orf114_uc001ggc.1_Missense_Mutation_p.Q73L	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	73											0	all_hematologic(923;0.208)					GACCTCATCCTGCAAAGATTT	0.398		NA											28	26					0	0	0	0
F5	2153	broad.mit.edu	37	1	169505920	169505920	+	Splice_Site	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:169505920T>C	uc001ggg.1	-	14	4942	c.4797_splice	c.e14-1	p.R1599_splice		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor						cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGTTTCCCTGAAATAATAA	0.269		NA											19	37					0	0	0	0
FASLG	356	broad.mit.edu	37	1	172628386	172628386	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:172628386G>C	uc001gis.2	+	1	202	c.45G>C	c.(43-45)GTG>GTC	p.V15V	FASLG_uc001git.2_Silent_p.V15V	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	15	Pro-rich.|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TCTACTGGGTGGACAGCAGTG	0.547		NA											5	61					0	0	0	0
TNFSF4	7292	broad.mit.edu	37	1	173157708	173157708	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:173157708C>G	uc001giw.2	-	2	310	c.154G>C	c.(154-156)GTA>CTA	p.V52L	TNFSF4_uc001giv.2_Missense_Mutation_p.V2L	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	52	Extracellular (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						CGATGTGATACCTGAGGGAGG	0.328		NA											17	99					0	0	0	0
TNR	7143	broad.mit.edu	37	1	175306678	175306678	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:175306678C>A	uc001gkp.1	-	17	3601	c.3520G>T	c.(3520-3522)GGG>TGG	p.G1174W	TNR_uc009wwu.1_Missense_Mutation_p.G1174W	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1174	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CAGCCGCCCCCGTCGGTGGTC	0.507		NA											35	52					2.87e-16	3.74e-16	1	0
RFWD2	64326	broad.mit.edu	37	1	176012927	176012927	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:176012927C>G	uc001gku.1	-	13	1705	c.1449G>C	c.(1447-1449)AAG>AAC	p.K483N	RFWD2_uc001gkv.1_Missense_Mutation_p.K459N|RFWD2_uc001gkw.1_Missense_Mutation_p.K243N|RFWD2_uc009wwv.2_Missense_Mutation_p.K282N|RFWD2_uc001gkt.1_Missense_Mutation_p.K322N	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	483	WD 2.				DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						CTAACAGGTTCTTATGGTAAC	0.323		NA											55	276					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	185939517	185939517	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:185939517G>T	uc001grq.1	+	15	2492	c.2263G>T	c.(2263-2265)GGA>TGA	p.G755*	HMCN1_uc001grr.1_Nonsense_Mutation_p.G96*	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	755	Ig-like C2-type 4.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCCTCTCTTGGGACTTTTGAA	0.408		NA											84	191					7.68e-34	1.08e-33	1	0
PTPN7	5778	broad.mit.edu	37	1	202121728	202121728	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:202121728C>T	uc001gxm.1	-	8	948	c.817G>A	c.(817-819)GAG>AAG	p.E273K	PTPN7_uc001gxl.1_Missense_Mutation_p.E312K|PTPN7_uc001gxn.1_Missense_Mutation_p.E273K|PTPN7_uc010ppv.1_Missense_Mutation_p.E92K|PTPN7_uc010ppw.1_Missense_Mutation_p.E221K|PTPN7_uc010ppx.1_Missense_Mutation_p.E347K|PTPN7_uc010ppy.1_RNA|PTPN7_uc001gxo.1_Missense_Mutation_p.E225K	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	273	Tyrosine-protein phosphatase.					cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						TCCTCCACCTCTGCCACTAGG	0.642		NA											16	33					0	0	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204236663	204236663	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:204236663C>G	uc001hau.2	-	5	537	c.220G>C	c.(220-222)GTT>CTT	p.V74L		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	74	PH.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			CACTGCTTAACCCCGGAGCTG	0.597		NA											18	51					0	0	0	0
CD34	947	broad.mit.edu	37	1	208062192	208062192	+	Splice_Site	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:208062192C>G	uc001hgw.1	-	7	1066	c.808_splice	c.e7-1	p.L270_splice	CD34_uc001hgv.1_Splice_Site_p.L112_splice|CD34_uc001hgx.1_Splice_Site_p.L270_splice|CD34_uc010psj.1_Splice_Site_p.L135_splice	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a						cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						GGATCCCCAGCTTGAAAAGAA	0.527		NA											64	128					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215953214	215953214	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:215953214G>A	uc001hku.1	-	55	11297	c.10910C>T	c.(10909-10911)ACC>ATC	p.T3637I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3637	Extracellular (Potential).|Fibronectin type-III 21.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCTGTCAGTGGTGTCAGTGTG	0.498		NA								HNSCC(13;0.011)			52	55					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216040365	216040365	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:216040365C>A	uc001hku.1	-	44	9216	c.8829G>T	c.(8827-8829)GTG>GTT	p.V2943V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2943	Fibronectin type-III 16.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TAGCCCACCTCACGTCGATGG	0.448		NA								HNSCC(13;0.011)			35	57					1.05e-18	1.4e-18	1	0
EPRS	2058	broad.mit.edu	37	1	220156625	220156625	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:220156625T>A	uc001hly.1	-	22	3476	c.3206A>T	c.(3205-3207)AAG>ATG	p.K1069M		NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	1069	Prolyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	ACCAAGTTTCTTGATCTCAGC	0.423		NA											53	68					0	0	0	0
GALNT2	2590	broad.mit.edu	37	1	230338962	230338962	+	Silent	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:230338962C>G	uc010pwa.1	+	3	372	c.300C>G	c.(298-300)GCC>GCG	p.A100A	GALNT2_uc010pvy.1_Silent_p.A62A|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	100	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				ACCCTTACGCCCGCAACAAGT	0.552		NA											38	114					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237580388	237580388	+	Silent	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:237580388A>T	uc001hyl.1	+	11	933	c.813A>T	c.(811-813)GCA>GCT	p.A271A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	271	Cytoplasmic (By similarity).|MIR 3.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTGTTCATGCACGTTCCCTTT	0.423		NA											22	32					0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240256593	240256593	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:240256593C>T	uc010pyd.1	+	1	1409	c.1184C>T	c.(1183-1185)GCT>GTT	p.A395V	FMN2_uc010pye.1_Missense_Mutation_p.A395V	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	395					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCGCGGCCGCTTCCCTGCCC	0.726		NA											21	17					0	0	0	0
RGS7	6000	broad.mit.edu	37	1	240966253	240966253	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:240966253C>T	uc001hyv.2	-	16	1640	c.1310G>A	c.(1309-1311)CGT>CAT	p.R437H	RGS7_uc010pyh.1_Missense_Mutation_p.R411H|RGS7_uc010pyj.1_Missense_Mutation_p.R353H|RGS7_uc001hyu.2_Missense_Mutation_p.R437H|RGS7_uc009xgn.1_Missense_Mutation_p.R384H|RGS7_uc001hyw.2_Missense_Mutation_p.R437H|RGS7_uc001hyt.2_Missense_Mutation_p.R269H	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	437	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCTTATAAAACGTGGGTATGA	0.343		NA											54	80					0	0	0	0
RGS7	6000	broad.mit.edu	37	1	240975331	240975331	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:240975331G>T	uc001hyv.2	-	14	1299	c.969C>A	c.(967-969)AGC>AGA	p.S323R	RGS7_uc010pyh.1_Missense_Mutation_p.S297R|RGS7_uc010pyj.1_Missense_Mutation_p.S239R|RGS7_uc001hyu.2_Missense_Mutation_p.S323R|RGS7_uc009xgn.1_Missense_Mutation_p.S270R|RGS7_uc001hyw.2_Missense_Mutation_p.S323R|RGS7_uc001hyt.2_Missense_Mutation_p.S155R	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	323					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CCCTCTGCTGGCTCGGTTCTT	0.393		NA											38	58					1.5e-21	2.03e-21	1	0
OR6F1	343169	broad.mit.edu	37	1	247875907	247875907	+	Missense_Mutation	SNP	T	T	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:247875907T>G	uc001idj.1	-	1	151	c.151A>C	c.(151-153)ACC>CCC	p.T51P		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TGATGGGAGGTGCTCACCAAC	0.473		NA											41	80					0	0	0	0
ITIH5	80760	broad.mit.edu	37	10	7708844	7708844	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:7708844C>A	uc001ijq.2	-	1	91	c.12G>T	c.(10-12)CTG>CTT	p.L4L	ITIH5_uc001ijr.1_Silent_p.L4L	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	4					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ACAGCCCCAGCAGCAGGAGCA	0.731		NA											5	18					8.13e-05	8.83e-05	1	0
GPR158	57512	broad.mit.edu	37	10	25464376	25464376	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:25464376C>T	uc001isj.2	+	1	87	c.27C>T	c.(25-27)CTC>CTT	p.L9L	LOC100128811_uc010qde.1_Intron	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	9						integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ACCCCTTACTCCTCTGCCTCC	0.602		NA											23	29					0	0	0	0
GAD2	2572	broad.mit.edu	37	10	26581417	26581417	+	Silent	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:26581417T>C	uc001isp.2	+	14	1913	c.1410T>C	c.(1408-1410)CAT>CAC	p.H470H	GAD2_uc001isq.2_Silent_p.H470H	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	470					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	TTGAAGCGCATGTTGATAAAT	0.438		NA											12	20					0	0	0	0
GDF10	2662	broad.mit.edu	37	10	48428899	48428899	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:48428899C>T	uc001jfb.2	-	2	1443	c.987G>A	c.(985-987)CGG>CGA	p.R329R	GDF10_uc009xnp.2_Silent_p.R328R|GDF10_uc009xnq.1_Silent_p.R329R	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	329					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GTTTCAGCGCCCGGAAGGGGC	0.682		NA											8	18					0	0	0	0
C10orf71	118461	broad.mit.edu	37	10	50531202	50531202	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:50531202C>A	uc010qgp.1	+	3	951	c.612C>A	c.(610-612)AAC>AAA	p.N204K		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	204											0						AAGTTTCCAACACCCATCAGA	0.532		NA											6	17					0.00198382	0.00209416	1	0
IPMK	253430	broad.mit.edu	37	10	59956302	59956302	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:59956302C>T	uc001jkb.2	-	6	1109	c.786G>A	c.(784-786)CAG>CAA	p.Q262Q		NM_152230	NP_689416	Q8NFU5	IPMK_HUMAN	inositol polyphosphate multikinase	262						nucleus	ATP binding|inositol trisphosphate 6-kinase activity			ovary(1)	1						TAGTGGTTGGCTGAGATGAAC	0.353		NA											13	31					0	0	0	0
BICC1	80114	broad.mit.edu	37	10	60560767	60560767	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:60560767C>A	uc001jki.1	+	14	1976	c.1976C>A	c.(1975-1977)ACA>AAA	p.T659K	BICC1_uc001jkj.1_Missense_Mutation_p.T300K	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	659					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						AAAAGGCAGACAGTGGAACTA	0.403		NA											25	46					4.16e-05	4.58e-05	1	0
FAM13C	220965	broad.mit.edu	37	10	61012595	61012595	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:61012595G>T	uc001jkn.2	-	13	1630	c.1496C>A	c.(1495-1497)CCA>CAA	p.P499Q	FAM13C_uc001jko.2_Missense_Mutation_p.P401Q|FAM13C_uc010qid.1_Missense_Mutation_p.P415Q|FAM13C_uc010qie.1_Missense_Mutation_p.P416Q|FAM13C_uc010qif.1_Missense_Mutation_p.P521Q	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	499										ovary(2)	2						GGAGAGAGCTGGTGGTTTTAC	0.448		NA											30	50					1.07e-11	1.32e-11	1	0
PANK1	53354	broad.mit.edu	37	10	91404850	91404850	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:91404850C>T	uc001kgp.1	-	1	366	c.210G>A	c.(208-210)GCG>GCA	p.A70A	PANK1_uc001kgn.1_5'Flank|PANK1_uc001kgo.1_5'Flank|PANK1_uc009xtu.1_5'Flank	NM_148977	NP_683878	Q8TE04	PANK1_HUMAN	pantothenate kinase 1 isoform alpha	70					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol|nucleus	ATP binding|pantothenate kinase activity				0					Bezafibrate(DB01393)	gccccccgcgcgccggcccca	0.647		NA											3	2					0	0	0	0
ZNF518A	9849	broad.mit.edu	37	10	97917430	97917430	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:97917430G>A	uc001klp.2	+	6	2208	c.1351G>A	c.(1351-1353)GAT>AAT	p.D451N	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.D451N|ZNF518A_uc001klr.2_Missense_Mutation_p.D451N	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	451					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		CAAGATGATGGATGGAAAACA	0.373		NA											24	80					0	0	0	0
ZFYVE27	118813	broad.mit.edu	37	10	99512906	99512906	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:99512906C>T	uc001koo.2	+	10	1209	c.1009C>T	c.(1009-1011)CGG>TGG	p.R337W	ZFYVE27_uc001kon.2_Missense_Mutation_p.R342W|ZFYVE27_uc001koq.2_Missense_Mutation_p.R244W|ZFYVE27_uc010qpa.1_Missense_Mutation_p.R212W|ZFYVE27_uc001kop.2_Missense_Mutation_p.R330W|ZFYVE27_uc010qpb.1_Missense_Mutation_p.R237W|ZFYVE27_uc010qpc.1_RNA|ZFYVE27_uc010qpd.1_Missense_Mutation_p.R298W|ZFYVE27_uc001kok.1_RNA|ZFYVE27_uc001kol.1_Missense_Mutation_p.R337W|ZFYVE27_uc001kom.1_Missense_Mutation_p.R330W	NM_144588	NP_653189	Q5T4F4	ZFY27_HUMAN	zinc finger, FYVE domain containing 27 isoform	337	Extracellular (Potential).				cell death|nerve growth factor receptor signaling pathway|neuron projection development|protein localization in plasma membrane	axon|dendrite|endoplasmic reticulum membrane|growth cone membrane|integral to membrane|recycling endosome membrane	metal ion binding|protein binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;7.08e-10)|all cancers(201;5.18e-08)		GCTCACGGAGCGGCTCCGCAA	0.672		NA											4	9					0	0	0	0
CUTC	51076	broad.mit.edu	37	10	101510142	101510142	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:101510142T>C	uc001kqd.3	+	7	738	c.590T>C	c.(589-591)GTG>GCG	p.V197A	CUTC_uc001kqe.3_Intron	NM_015960	NP_057044	Q9NTM9	CUTC_HUMAN	cutC copper transporter homolog	197					copper ion homeostasis|copper ion transport|protein tetramerization	cytoplasm|nucleus	copper ion binding			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3e-10)|all cancers(201;2.37e-08)		GGCAGGATTGTGGTAATGCCA	0.338		NA											20	41					0	0	0	0
NRAP	4892	broad.mit.edu	37	10	115392938	115392938	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:115392938G>A	uc001laj.2	-	16	1701	c.1537C>T	c.(1537-1539)CGT>TGT	p.R513C	NRAP_uc001lak.2_Missense_Mutation_p.R478C|NRAP_uc001lal.3_Missense_Mutation_p.R513C	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	513	Nebulin 11.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TAGTCAGCACGGTAATTCACC	0.418		NA											15	42					0	0	0	0
ATRNL1	26033	broad.mit.edu	37	10	117026300	117026300	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:117026300C>A	uc001lcg.2	+	12	2185	c.1799C>A	c.(1798-1800)TCT>TAT	p.S600Y		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	600	Kelch 6.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		GGGGGATTTTCTAGTGTACTC	0.318		NA											35	57					1.6e-16	2.1e-16	1	0
DPYSL4	10570	broad.mit.edu	37	10	134008362	134008362	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:134008362C>T	uc009ybb.2	+	4	481	c.327C>T	c.(325-327)TTC>TTT	p.F109F		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	109					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		ACCACGTCTTCCCCGACACGG	0.647		NA											18	49					0	0	0	0
STK32C	282974	broad.mit.edu	37	10	134041490	134041490	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:134041490A>G	uc001lle.1	-	3	601	c.461T>C	c.(460-462)GTG>GCG	p.V154A	STK32C_uc001lld.1_Missense_Mutation_p.V37A|STK32C_uc010quu.1_Missense_Mutation_p.V167A|STK32C_uc009ybc.1_Missense_Mutation_p.V37A|STK32C_uc009ybd.1_Missense_Mutation_p.V37A|STK32C_uc001llb.2_5'UTR|STK32C_uc001llc.1_RNA	NM_173575	NP_775846	Q86UX6	ST32C_HUMAN	serine/threonine kinase 32C	154	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		CCAGAGGTTCACCAGGAAGAC	0.592		NA											7	9					0	0	0	0
ADAM8	101	broad.mit.edu	37	10	135084731	135084731	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:135084731C>T	uc010qva.1	-	12	1281	c.1230G>A	c.(1228-1230)GCG>GCA	p.A410A	ADAM8_uc010quz.1_Silent_p.A449A|ADAM8_uc009ybi.2_Silent_p.A449A			P78325	ADAM8_HUMAN	SubName: Full=cDNA FLJ50704, highly similar to ADAM 8 (EC 3.4.24.-) (A disintegrinand metalloproteinase domain 8);	410					integrin-mediated signaling pathway|proteolysis		metalloendopeptidase activity			large_intestine(2)|central_nervous_system(1)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;7.72e-06)|OV - Ovarian serous cystadenocarcinoma(35;8.23e-06)|Epithelial(32;1.02e-05)		AGGTACCGTGCGCACACTGGG	0.687		NA											4	9					0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1162107	1162107	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:1162107G>A	uc009ycr.1	+	15	1824	c.1698G>A	c.(1696-1698)CAG>CAA	p.Q566Q		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	557	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCCGTGGGCAGACCTGCGGTA	0.657		NA											3	5					0	0	0	0
CD81	975	broad.mit.edu	37	11	2411680	2411680	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:2411680C>T	uc001lwf.1	+	2	338	c.105C>T	c.(103-105)CTC>CTT	p.L35L	CD81_uc001lwg.1_Silent_p.L28L	NM_004356	NP_004347	P60033	CD81_HUMAN	CD81 antigen	35	Extracellular (Potential).				activation of MAPK activity|cell proliferation|phosphatidylinositol biosynthetic process|positive regulation of 1-phosphatidylinositol 4-kinase activity|positive regulation of cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization|regulation of immune response|virion attachment, binding of host cell surface receptor	integral to plasma membrane	protein binding				0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.000338)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCCTGTGGCTCCGCCATGACC	0.622		NA											24	36					0	0	0	0
DENND5A	23258	broad.mit.edu	37	11	9182329	9182329	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:9182329C>T	uc001mhl.2	-	12	2622	c.2367G>A	c.(2365-2367)GAG>GAA	p.E789E	DENND5A_uc001mhk.2_Silent_p.E132E|DENND5A_uc010rbw.1_Silent_p.E789E|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	789	RUN 1.									liver(1)	1						TCAGGGTGTTCTCTTCCACCC	0.512		NA											29	55					0	0	0	0
ANO3	63982	broad.mit.edu	37	11	26529699	26529699	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:26529699A>T	uc001mqt.3	+	5	626	c.481A>T	c.(481-483)AAA>TAA	p.K161*	ANO3_uc010rdr.1_Nonsense_Mutation_p.K145*|ANO3_uc010rds.1_Nonsense_Mutation_p.K15*|ANO3_uc010rdt.1_Nonsense_Mutation_p.K15*	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	161	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAAAGATGGCAAAAAGAGAAT	0.338		NA											8	32					0	0	0	0
MTCH2	23788	broad.mit.edu	37	11	47653242	47653242	+	Missense_Mutation	SNP	G	G	C	rs146228351	by1000genomes	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:47653242G>C	uc010rho.1	-	6	580	c.391C>G	c.(391-393)CGT>GGT	p.R131G	MTCH2_uc001nge.2_Missense_Mutation_p.R4G|MTCH2_uc010rhp.1_Intron	NM_014342	NP_055157	Q9Y6C9	MTCH2_HUMAN	mitochondrial carrier 2	131	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						GCAGCAGAACGAGCGATCATC	0.423		NA											16	45					0	0	0	0
OR5D14	219436	broad.mit.edu	37	11	55563127	55563127	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:55563127G>A	uc010rim.1	+	1	96	c.96G>A	c.(94-96)GTG>GTA	p.V32V		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TCTTCCTTGTGTTTCTGCTCA	0.388		NA											15	76					0	0	0	0
OR8H2	390151	broad.mit.edu	37	11	55872956	55872956	+	Silent	SNP	T	T	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:55872956T>G	uc010riy.1	+	1	438	c.438T>G	c.(436-438)ACT>ACG	p.T146T		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CTCTCATCACTGGGCCTTATG	0.453		NA								HNSCC(53;0.14)			66	100					0	0	0	0
OR8H2	390151	broad.mit.edu	37	11	55873223	55873223	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:55873223G>C	uc010riy.1	+	1	705	c.705G>C	c.(703-705)CAG>CAC	p.Q235H		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CAGGAAAGCAGAAAGCTTTCT	0.383		NA								HNSCC(53;0.14)			39	43					0	0	0	0
GLYATL2	219970	broad.mit.edu	37	11	58604861	58604861	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:58604861C>T	uc001nnd.3	-	4	327	c.196G>A	c.(196-198)GAT>AAT	p.D66N	GLYATL2_uc009ymq.2_Missense_Mutation_p.D66N	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	66						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TCCTGGTCATCTTTCATCTCC	0.363		NA											8	64					0	0	0	0
OR4D11	219986	broad.mit.edu	37	11	59271125	59271125	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:59271125T>A	uc001noa.1	+	1	77	c.77T>A	c.(76-78)GTC>GAC	p.V26D		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAGAGTTTGGTCTTGTTTCTT	0.433		NA											25	72					0	0	0	0
METTL12	751071	broad.mit.edu	37	11	62434253	62434253	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:62434253G>A	uc001nug.1	+	3	712	c.453G>A	c.(451-453)GTG>GTA	p.V151V	C11orf48_uc001nue.2_Intron|C11orf48_uc001nuf.2_Intron|METTL12_uc001nuh.2_3'UTR|METTL12_uc010rmc.1_RNA	NM_001043229	NP_001036694	A8MUP2	MTL12_HUMAN	methyltransferase like 12 precursor	151						mitochondrion	methyltransferase activity				0						TGGGGGCTGTGGCTTCTTCAG	0.592		NA											14	51					0	0	0	0
SLC22A12	116085	broad.mit.edu	37	11	64359366	64359366	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:64359366C>G	uc001oam.1	+	1	1085	c.338C>G	c.(337-339)ACG>AGG	p.T113R	SLC22A12_uc009ypr.1_Missense_Mutation_p.T113R|SLC22A12_uc001oal.1_5'UTR|SLC22A12_uc009yps.1_Missense_Mutation_p.T113R|SLC22A12_uc001oan.1_Missense_Mutation_p.T113R|SLC22A12_uc009ypt.2_5'Flank	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	113					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GAGGCCGACACGGAGCCGTGT	0.672		NA											9	26					0	0	0	0
SNX15	29907	broad.mit.edu	37	11	64795103	64795103	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:64795103G>C	uc001oci.3	+	4	747	c.94G>C	c.(94-96)GCG>CCG	p.A32P	SNX15_uc009ypy.2_Missense_Mutation_p.A32P|SNX15_uc001ocj.2_Missense_Mutation_p.A32P|SNX15_uc001ock.2_Missense_Mutation_p.A32P	NM_013306	NP_037438	Q9NRS6	SNX15_HUMAN	sorting nexin 15 isoform A	32	PX.				cell communication|intracellular protein transport	cytoplasmic vesicle membrane|cytosol	phosphatidylinositol binding|protein transporter activity			ovary(1)	1						CAAAGTAACCGCGCAGGTGAG	0.577		NA									OREG0021069	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	26					0	0	0	0
NLRX1	79671	broad.mit.edu	37	11	119050721	119050721	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:119050721A>T	uc001pvu.2	+	7	2206	c.1991A>T	c.(1990-1992)AAG>ATG	p.K664M	NLRX1_uc010rzc.1_Missense_Mutation_p.K486M|NLRX1_uc001pvv.2_Missense_Mutation_p.K664M|NLRX1_uc001pvw.2_Missense_Mutation_p.K664M|NLRX1_uc001pvx.2_Missense_Mutation_p.K664M	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	664	Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AAGCTGGGCAAGCTGGGCCGG	0.602		NA											5	22					0	0	0	0
HSPA8	3312	broad.mit.edu	37	11	122930365	122930365	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:122930365G>C	uc001pyo.2	-	5	1014	c.936C>G	c.(934-936)GGC>GGG	p.G312G	HSPA8_uc009zbc.2_Silent_p.G76G|HSPA8_uc001pyp.2_Silent_p.G312G|HSPA8_uc010rzu.1_Silent_p.G235G|HSPA8_uc009zbd.1_Silent_p.G312G	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	312	Interaction with BAG1.				cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GGTCCAGGGTGCCACGGAACA	0.478		NA											23	39					0	0	0	0
ASAM	79827	broad.mit.edu	37	11	122944443	122944443	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:122944443G>C	uc001pyt.2	-	7	1220	c.861C>G	c.(859-861)CCC>CCG	p.P287P		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	287	Cytoplasmic (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		AAGAGGAGCTGGGTTTCACAA	0.507		NA											17	76					0	0	0	0
OR8B3	390271	broad.mit.edu	37	11	124266520	124266520	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:124266520G>C	uc010saj.1	-	1	728	c.728C>G	c.(727-729)TCT>TGT	p.S243C	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AATGACATGAGAGCTACAAGT	0.383		NA											25	89					0	0	0	0
OR8B3	390271	broad.mit.edu	37	11	124267068	124267068	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:124267068G>A	uc010saj.1	-	1	180	c.180C>T	c.(178-180)TAC>TAT	p.Y60Y	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGAGGAAATAGTACATTGGTG	0.378		NA											23	22					0	0	0	0
CHEK1	1111	broad.mit.edu	37	11	125525182	125525182	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr11:125525182G>C	uc009zbo.2	+	13	2290	c.1398G>C	c.(1396-1398)GTG>GTC	p.V466V	CHEK1_uc010sbh.1_Silent_p.V482V|CHEK1_uc010sbi.1_Silent_p.V432V|CHEK1_uc001qcf.3_Silent_p.V466V|CHEK1_uc009zbp.2_Silent_p.V466V|CHEK1_uc001qcg.3_Silent_p.V466V|CHEK1_uc009zbq.2_Silent_p.V422V|CHEK1_uc001qci.1_RNA|CHEK1_uc001qcj.2_Silent_p.V114V	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	466	Autoinhibitory region.				cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		TTGATATTGTGAGCAGCCAGA	0.393		NA						Other_conserved_DNA_damage_response_genes					9	18					0	0	0	0
PZP	5858	broad.mit.edu	37	12	9318716	9318716	+	Silent	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:9318716T>C	uc001qvl.2	-	18	2219	c.2190A>G	c.(2188-2190)TCA>TCG	p.S730S	PZP_uc009zgl.2_Silent_p.S599S|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Silent_p.S62S	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						GGACTGGCCCTGAACTTTGTT	0.413		NA											41	96					0	0	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20864365	20864365	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:20864365C>A	uc001rej.3	+	6	805	c.450C>A	c.(448-450)AGC>AGA	p.S150R	SLCO1C1_uc010sii.1_Missense_Mutation_p.S150R|SLCO1C1_uc010sij.1_Missense_Mutation_p.S150R|SLCO1C1_uc009zip.2_5'UTR|SLCO1C1_uc001rei.2_Missense_Mutation_p.S150R|SLCO1C1_uc010sik.1_Missense_Mutation_p.S32R	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	150	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CCACTCTCAGCATCTCTCCGT	0.348		NA											22	114					5.35e-11	6.58e-11	1	0
ADAMTS20	80070	broad.mit.edu	37	12	43944888	43944888	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:43944888G>T	uc010skx.1	-	2	277	c.277C>A	c.(277-279)CTG>ATG	p.L93M		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	93						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TCGGCGGTCAGGTTCAGCTGG	0.667		NA											22	20					3.8e-18	5.08e-18	1	0
DDX23	9416	broad.mit.edu	37	12	49229995	49229995	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:49229995T>C	uc001rsm.2	-	11	1382	c.1291A>G	c.(1291-1293)ATC>GTC	p.I431V		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	431	Helicase ATP-binding.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						ACACCAATGATGTCACGATTC	0.507		NA											47	126					0	0	0	0
KRT72	140807	broad.mit.edu	37	12	52979944	52979944	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:52979944C>A	uc001sar.2	-	9	1444	c.1358G>T	c.(1357-1359)AGC>ATC	p.S453I	KRT72_uc001saq.2_Missense_Mutation_p.S453I|KRT72_uc010sns.1_Missense_Mutation_p.S411I|KRT72_uc010snt.1_Missense_Mutation_p.S265I	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	453	Tail.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		AGCATTGGTGCTGCTGATGAC	0.587		NA											17	18					9.17e-09	1.09e-08	1	0
OR6C76	390326	broad.mit.edu	37	12	55820894	55820894	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:55820894T>C	uc010spm.1	+	1	857	c.857T>C	c.(856-858)ATT>ACT	p.I286T		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AATCCATTTATTTACACTCTA	0.348		NA											23	20					0	0	0	0
NAB2	4665	broad.mit.edu	37	12	57485439	57485439	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:57485439G>C	uc001smz.2	+	2	993	c.615G>C	c.(613-615)TCG>TCC	p.S205S		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	205					cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGGCTGGCTCGCCCCCCTTCT	0.726		NA											5	22					0	0	0	0
LGR5	8549	broad.mit.edu	37	12	71978435	71978435	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:71978435C>T	uc001swl.2	+	18	2693	c.2645C>T	c.(2644-2646)CCC>CTC	p.P882L	LGR5_uc001swm.2_Missense_Mutation_p.P858L|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	882	Cytoplasmic (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GACCTGCCTCCCAGTTCCGTG	0.448		NA											66	75					0	0	0	0
NEDD1	121441	broad.mit.edu	37	12	97303599	97303599	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:97303599C>G	uc001teu.3	+	3	401	c.62C>G	c.(61-63)TCT>TGT	p.S21C	NEDD1_uc001tev.3_Missense_Mutation_p.S21C|NEDD1_uc010svc.1_Intron|NEDD1_uc001tew.2_Missense_Mutation_p.S28C|NEDD1_uc001tex.2_5'Flank	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	21	WD 1.				cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						GATGCTTCATCTATGACATTG	0.348		NA											14	17					0	0	0	0
PIWIL1	9271	broad.mit.edu	37	12	130847589	130847589	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:130847589G>A	uc001uik.2	+	18	2185	c.2095G>A	c.(2095-2097)GTG>ATG	p.V699M	PIWIL1_uc001uij.1_Missense_Mutation_p.V699M	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	699	Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		CCGGATCATCGTGTACCGCGA	0.488		NA											8	44					0	0	0	0
IFT88	8100	broad.mit.edu	37	13	21212594	21212594	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:21212594G>A	uc001unh.2	+	19	1933	c.1537G>A	c.(1537-1539)GCT>ACT	p.A513T	IFT88_uc001uni.2_Missense_Mutation_p.A504T|IFT88_uc001unj.2_Missense_Mutation_p.A503T|IFT88_uc010tcq.1_Missense_Mutation_p.A484T|IFT88_uc001unk.2_Missense_Mutation_p.A259T	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	513	TPR 7.				cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		TGAGAAGGCCGCTGAATTCTA	0.338		NA											73	52					0	0	0	0
TRPC4	7223	broad.mit.edu	37	13	38357101	38357101	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:38357101C>A	uc001uws.2	-	2	605	c.370G>T	c.(370-372)GAA>TAA	p.E124*	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Nonsense_Mutation_p.E124*|TRPC4_uc010tey.1_Nonsense_Mutation_p.E124*|TRPC4_uc010abw.2_Nonsense_Mutation_p.E124*|TRPC4_uc010abx.2_Nonsense_Mutation_p.E124*|TRPC4_uc010aby.2_Nonsense_Mutation_p.E124*	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	124	ANK 3.|Cytoplasmic (Potential).|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		ACCTGTTTTTCTCCACTAGGT	0.289		NA											42	30					7.05e-23	9.63e-23	1	0
LCP1	3936	broad.mit.edu	37	13	46721147	46721147	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:46721147C>T	uc001vaz.3	-	10	1196	c.1070G>A	c.(1069-1071)CGA>CAA	p.R357Q	LCP1_uc001vay.3_5'Flank|LCP1_uc001vba.3_Missense_Mutation_p.R357Q	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	357	CH 2.|Actin-binding 1.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		GGGGTTCCCTCGGACAACATC	0.547		NA	T	BCL6	NHL 								10	86					0	0	0	0
THSD1	55901	broad.mit.edu	37	13	52951683	52951683	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:52951683C>G	uc001vgo.2	-	5	2967	c.2422G>C	c.(2422-2424)GAG>CAG	p.E808Q	THSD1_uc001vgp.2_Missense_Mutation_p.E755Q|THSD1_uc010tgz.1_Missense_Mutation_p.E429Q|THSD1_uc010aea.2_Missense_Mutation_p.E269Q	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	808	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		AAGGCAAACTCAGGGTGAGTG	0.488		NA											32	31					0	0	0	0
DIAPH3	81624	broad.mit.edu	37	13	60737866	60737866	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:60737866G>A	uc001vht.2	-	1	254	c.35C>T	c.(34-36)GCC>GTC	p.A12V	DIAPH3_uc001vhw.1_Missense_Mutation_p.A12V|DIAPH3_uc010aed.1_Missense_Mutation_p.A12V|DIAPH3_uc010aee.1_Missense_Mutation_p.A12V	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	12					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		TGAGCCTTGGGCCGGGTGGTG	0.682		NA											11	8					0	0	0	0
KLHL1	57626	broad.mit.edu	37	13	70314562	70314562	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:70314562G>T	uc001vip.2	-	8	2560	c.1766C>A	c.(1765-1767)GCT>GAT	p.A589D	KLHL1_uc010thm.1_Missense_Mutation_p.A528D	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	589	Kelch 3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TGTGCTCCGAGCAATTGACAT	0.378		NA											22	36					5.35e-11	6.58e-11	1	0
TBC1D4	9882	broad.mit.edu	37	13	75898460	75898460	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr13:75898460G>A	uc001vjl.1	-	11	2458	c.2111C>T	c.(2110-2112)TCT>TTT	p.S704F	TBC1D4_uc010aer.2_Missense_Mutation_p.S704F|TBC1D4_uc010aes.2_Intron	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	704	Ser-rich.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GGAAGGGGCAGAGAAGGAAGT	0.443		NA											27	34					0	0	0	0
POTEG	404785	broad.mit.edu	37	14	19553564	19553564	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:19553564G>T	uc001vuz.1	+	1	200	c.148G>T	c.(148-150)GAC>TAC	p.D50Y	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	50										ovary(1)	1						TGGAGACCACGACGATTCTGC	0.607		NA											63	537					1.31e-26	1.82e-26	1	0
OR4Q3	441669	broad.mit.edu	37	14	20216207	20216207	+	Silent	SNP	G	G	C	rs150293428	byFrequency	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:20216207G>C	uc010tkt.1	+	1	621	c.621G>C	c.(619-621)CTG>CTC	p.L207L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTGGTCTGCTGTCTCTTGTCT	0.488		NA											26	95					0	0	0	0
OR11H6	122748	broad.mit.edu	37	14	20692620	20692620	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:20692620G>C	uc010tlc.1	+	1	752	c.752G>C	c.(751-753)GGT>GCT	p.G251A		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	251	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		TCTGGTGCTGGTCGAACTAAA	0.478		NA											15	12					0	0	0	0
NPAS3	64067	broad.mit.edu	37	14	34269385	34269385	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:34269385C>A	uc001wru.2	+	12	1936	c.1872C>A	c.(1870-1872)GGC>GGA	p.G624G	NPAS3_uc001wrs.2_Silent_p.G611G|NPAS3_uc001wrt.2_Silent_p.G592G|NPAS3_uc001wrv.2_Silent_p.G594G	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	624					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CGAGCCCAGGCGGCCTGGACG	0.672		NA											17	6					3.53e-06	3.98e-06	1	0
BAZ1A	11177	broad.mit.edu	37	14	35243604	35243604	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:35243604C>T	uc001wsk.2	-	19	3494	c.2926G>A	c.(2926-2928)GAA>AAA	p.E976K	BAZ1A_uc001wsl.2_Missense_Mutation_p.E944K	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	976					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		AGCCTTAGTTCAAGTTGCTTT	0.378		NA											10	40					0	0	0	0
LRFN5	145581	broad.mit.edu	37	14	42356760	42356760	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:42356760G>T	uc001wvm.2	+	3	2130	c.932G>T	c.(931-933)AGG>ATG	p.R311M	LRFN5_uc010ana.2_Missense_Mutation_p.R311M	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	311	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TGCAAAGCCAGGGGAGACCCT	0.468		NA								HNSCC(30;0.082)			42	47					3.09e-21	4.2e-21	1	0
FAM179B	23116	broad.mit.edu	37	14	45537659	45537659	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:45537659T>A	uc001wvv.2	+	17	4832	c.4623T>A	c.(4621-4623)GAT>GAA	p.D1541E	FAM179B_uc001wvw.2_Missense_Mutation_p.D1594E|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1541	HEAT 5.						binding			skin(2)|upper_aerodigestive_tract(1)	3						GACTTCATGATTCTAATAGTA	0.279		NA											9	35					0	0	0	0
MDGA2	161357	broad.mit.edu	37	14	47389219	47389219	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:47389219C>T	uc001wwj.3	-	10	2223	c.2027G>A	c.(2026-2028)AGG>AAG	p.R676K	MDGA2_uc001wwi.3_Missense_Mutation_p.R447K|MDGA2_uc010ani.2_Missense_Mutation_p.R236K	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	676					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TCTCACCTGCCTGATGCCCAA	0.413		NA											10	27					0	0	0	0
SAV1	60485	broad.mit.edu	37	14	51132094	51132094	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:51132094G>A	uc001wyg.1	-	3	499	c.338C>T	c.(337-339)TCT>TTT	p.S113F	SAV1_uc001wyh.1_Missense_Mutation_p.S113F	NM_021818	NP_068590	Q9H4B6	SAV1_HUMAN	WW45 protein	113					hippo signaling cascade	cytoplasm|nucleus	identical protein binding			breast(1)	1	all_epithelial(31;0.000611)|Breast(41;0.0333)					AAATGACTGAGAAGAACCATA	0.388		NA											13	13					0	0	0	0
NID2	22795	broad.mit.edu	37	14	52481978	52481978	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:52481978G>T	uc001wzo.2	-	15	3278	c.3044C>A	c.(3043-3045)CCC>CAC	p.P1015H	NID2_uc010tqs.1_Missense_Mutation_p.P967H|NID2_uc010tqt.1_Missense_Mutation_p.P1015H|NID2_uc001wzp.2_Missense_Mutation_p.P1015H	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1015						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GATGGTCGGGGGCCTCTGGGT	0.582		NA											20	30					4.35e-09	5.19e-09	1	0
NID2	22795	broad.mit.edu	37	14	52509605	52509605	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:52509605G>C	uc001wzo.2	-	6	1708	c.1474C>G	c.(1474-1476)CAC>GAC	p.H492D	NID2_uc010tqs.1_Missense_Mutation_p.H492D|NID2_uc010tqt.1_Missense_Mutation_p.H492D|NID2_uc001wzp.2_Missense_Mutation_p.H492D	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	492	EGF-like 1.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					CATTGTCTGTGGTTGTGTTCA	0.458		NA											30	46					0	0	0	0
C14orf37	145407	broad.mit.edu	37	14	58598275	58598275	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:58598275C>A	uc001xdc.2	-	4	1897	c.1786G>T	c.(1786-1788)GTT>TTT	p.V596F	C14orf37_uc010tro.1_Missense_Mutation_p.V634F|C14orf37_uc001xdd.2_Missense_Mutation_p.V596F|C14orf37_uc001xde.2_Missense_Mutation_p.V596F	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	596	Extracellular (Potential).					integral to membrane	binding				0						GCTGTATTAACACGAGTAATA	0.478		NA											28	31					2.66e-16	3.46e-16	1	0
DACT1	51339	broad.mit.edu	37	14	59113678	59113678	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:59113678C>T	uc001xdw.2	+	4	2501	c.2337C>T	c.(2335-2337)AGC>AGT	p.S779S	DACT1_uc010trv.1_Silent_p.S498S|DACT1_uc001xdx.2_Silent_p.S742S|DACT1_uc010trw.1_Silent_p.S498S	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	779					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						CTGAAGAAAGCGGGGGCTTAA	0.542		NA											25	87					0	0	0	0
MPP5	64398	broad.mit.edu	37	14	67768785	67768786	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:67768785_67768786GG>TT	uc001xjc.2	+	6	1217_1218	c.751_752GG>TT	c.(751-753)GGA>TTA	p.G251L	MPP5_uc001xjd.2_Missense_Mutation_p.G217L|ATP6V1D_uc001xje.2_Intron	NM_022474	NP_071919	Q8N3R9	MPP5_HUMAN	membrane protein, palmitoylated 5	251					tight junction assembly	cytoplasm|endomembrane system|tight junction	protein domain specific binding			ovary(1)	1				all cancers(60;0.000388)|OV - Ovarian serous cystadenocarcinoma(108;0.00762)|BRCA - Breast invasive adenocarcinoma(234;0.0106)		CCAGTATGGAGGAGAAACTGTA	0.416		NA											36	36					0	0	0	0
RDH12	145226	broad.mit.edu	37	14	68192857	68192857	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:68192857G>A	uc001xjz.3	+	6	757	c.433G>A	c.(433-435)GGA>AGA	p.G145R		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	145			G -> E (in retinal dystrophy; exhibits a profound loss of catalytic activity).		photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	AACCCACCTGGGAGTCAACCA	0.433		NA											80	90					0	0	0	0
COX16	51241	broad.mit.edu	37	14	70795900	70795900	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:70795900C>T	uc001xmb.2	-	3	335	c.195G>A	c.(193-195)TCG>TCA	p.S65S		NM_016468	NP_057552	Q9P0S2	COX16_HUMAN	COX16 cytochrome c oxidase assembly homolog	65						integral to membrane|mitochondrial membrane					0						CCTCATATTCCGACTCTAAAG	0.294		NA											20	26					0	0	0	0
RGS6	9628	broad.mit.edu	37	14	72431525	72431525	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:72431525G>A	uc001xna.3	+	2	540	c.17G>A	c.(16-18)GGG>GAG	p.G6E	RGS6_uc010ttn.1_Missense_Mutation_p.G6E|RGS6_uc001xmx.3_Missense_Mutation_p.G6E|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.G6E	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	6					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CAAGGATCCGGGGATCAAAGA	0.463		NA											27	76					0	0	0	0
NRXN3	9369	broad.mit.edu	37	14	79181346	79181346	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:79181346G>T	uc001xun.2	+	5	1280	c.789G>T	c.(787-789)AAG>AAT	p.K263N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.K397N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	636	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CGGGTGTCAAGTCCTCCTGTT	0.547		NA											29	21					1.07e-11	1.32e-11	1	0
KCNK10	54207	broad.mit.edu	37	14	88707125	88707125	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:88707125C>A	uc001xwo.2	-	3	884	c.427G>T	c.(427-429)GGA>TGA	p.G143*	KCNK10_uc001xwm.2_Nonsense_Mutation_p.G148*|KCNK10_uc001xwn.2_Nonsense_Mutation_p.G148*	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	143					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GAAGAGTTTCCTATTGGACTG	0.418		NA											28	87					2.8e-10	3.42e-10	1	0
CCDC88C	440193	broad.mit.edu	37	14	91739649	91739649	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:91739649G>A	uc010aty.2	-	30	5506	c.5407C>T	c.(5407-5409)CGG>TGG	p.R1803W	CCDC88C_uc001xzj.2_Missense_Mutation_p.R327W|CCDC88C_uc001xzi.2_Missense_Mutation_p.R253W	NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1803				Missing (in Ref. 3; AAH35914).	microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTGAAGGCCCGGCTCAAGGAG	0.697		NA											3	7					0	0	0	0
FAM181A	90050	broad.mit.edu	37	14	94391643	94391643	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:94391643C>A	uc001ybz.1	+	2	333	c.26C>A	c.(25-27)TCT>TAT	p.S9Y	C14orf86_uc001yby.2_Intron|FAM181A_uc010aus.1_5'Flank|FAM181A_uc001yca.1_5'Flank	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	9											0						AGAAGATCTTCTGGAGAGAGG	0.557		NA											18	45					8.34e-07	9.52e-07	1	0
DLK1	8788	broad.mit.edu	37	14	101198399	101198399	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:101198399G>A	uc001yhs.3	+	4	436	c.283G>A	c.(283-285)GCC>ACC	p.A95T	DLK1_uc001yhu.3_Missense_Mutation_p.A95T	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	95	Extracellular (Potential).|EGF-like 3.				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				CTGCTCCTCGGCCCCCTGTGC	0.597		NA											22	27					0	0	0	0
CDCA4	55038	broad.mit.edu	37	14	105477874	105477874	+	Silent	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:105477874T>A	uc001yqa.2	-	2	489	c.393A>T	c.(391-393)CCA>CCT	p.P131P	CDCA4_uc001yqb.2_Silent_p.P131P	NM_145701	NP_663747	Q9BXL8	CDCA4_HUMAN	cell division cycle associated 4	131						nucleus				ovary(1)	1		all_cancers(154;0.0798)|Melanoma(154;0.155)|all_epithelial(191;0.183)	OV - Ovarian serous cystadenocarcinoma(23;0.00778)|all cancers(16;0.00936)|Epithelial(46;0.0227)	Epithelial(152;0.142)		CTGAGGTGACTGGGCAAAGGT	0.607		NA											20	44					0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890312	23890312	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:23890312C>A	uc001ywj.3	-	1	864	c.769G>T	c.(769-771)GCT>TCT	p.A257S		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TGGGGGGCAGCTGCTGTAGCC	0.627		NA											17	53					1.03e-11	1.28e-11	1	0
C15orf2	23742	broad.mit.edu	37	15	24921822	24921822	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:24921822T>C	uc001ywo.2	+	1	1282	c.808T>C	c.(808-810)TCC>CCC	p.S270P		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	270					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGTTGGCTGCTCCCTGCTGCA	0.637		NA											22	17					0	0	0	0
C15orf2	23742	broad.mit.edu	37	15	24922763	24922763	+	Silent	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:24922763A>G	uc001ywo.2	+	1	2223	c.1749A>G	c.(1747-1749)CCA>CCG	p.P583P		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	583					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTACTGCCCCATCTCAGGTTG	0.488		NA											27	70					0	0	0	0
GABRA5	2558	broad.mit.edu	37	15	27159966	27159966	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:27159966G>T	uc001zbd.1	+	8	853	c.514G>T	c.(514-516)GAG>TAG	p.E172*	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	172	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CATCTCTGCAGAGTGCCCCAT	0.478		NA											7	41					0.000157383	0.000169877	1	0
OCA2	4948	broad.mit.edu	37	15	28090152	28090152	+	Silent	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:28090152C>G	uc001zbh.3	-	23	2495	c.2385G>C	c.(2383-2385)GGG>GGC	p.G795G	OCA2_uc010ayv.2_Silent_p.G771G	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	795	Extracellular (Potential).		G -> R (in OCA2).		eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GTTCTGCAATCCCTGCACACA	0.403		NA							Oculocutaneous_Albinism				10	59					0	0	0	0
SLC24A5	283652	broad.mit.edu	37	15	48434324	48434324	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:48434324G>T	uc001zwe.2	+	9	1352	c.1279G>T	c.(1279-1281)GGA>TGA	p.G427*	SLC24A5_uc010bel.2_Nonsense_Mutation_p.G367*|MYEF2_uc001zwg.3_3'UTR|MYEF2_uc001zwh.3_3'UTR|MYEF2_uc001zwi.3_3'UTR|MYEF2_uc001zwj.3_3'UTR|SLC24A5_uc001zwk.2_Nonsense_Mutation_p.G58*	NM_205850	NP_995322	Q71RS6	NCKX5_HUMAN	solute carrier family 24, member 5 precursor	427	Cytoplasmic (Potential).				response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity				0		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		ATTTATAAATGGATCAGCTCC	0.363		NA											53	62					5.14e-22	7e-22	1	0
FBN1	2200	broad.mit.edu	37	15	48776017	48776017	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:48776017A>G	uc001zwx.1	-	31	4164	c.3836T>C	c.(3835-3837)GTA>GCA	p.V1279A		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1279	EGF-like 20; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTGCTTACCTACACAAGTCTT	0.383		NA											14	45					0	0	0	0
C15orf33	196951	broad.mit.edu	37	15	49833958	49833958	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:49833958C>A	uc001zxl.2	-	10	1087	c.793G>T	c.(793-795)GAA>TAA	p.E265*	C15orf33_uc001zxm.2_Nonsense_Mutation_p.E231*	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	265										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GGAAATGCTTCATGGAACGTT	0.254		NA											24	95					1.18e-12	1.48e-12	1	0
C15orf33	196951	broad.mit.edu	37	15	49868948	49868948	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:49868948T>C	uc001zxl.2	-	7	830	c.536A>G	c.(535-537)CAT>CGT	p.H179R	C15orf33_uc001zxm.2_Missense_Mutation_p.H179R	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	179										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		ATCAAAATTATGGGCTTTTAA	0.299		NA											23	10					0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62182498	62182498	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:62182498G>A	uc002agz.2	-	67	9281	c.9207C>T	c.(9205-9207)GCC>GCT	p.A3069A	VPS13C_uc002aha.2_Silent_p.A3026A|VPS13C_uc002ahb.1_Silent_p.A3069A|VPS13C_uc002ahc.1_Silent_p.A3026A	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3069					protein localization					ovary(2)	2						TGGAAACCAAGGCAACATCAT	0.438		NA											10	55					0	0	0	0
DENND4A	10260	broad.mit.edu	37	15	65968863	65968863	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:65968863G>A	uc002aph.2	-	23	4535	c.4157C>T	c.(4156-4158)TCT>TTT	p.S1386F	DENND4A_uc002api.2_Missense_Mutation_p.S1429F	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1386					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GGTCTCTTGAGAGGAGATAGG	0.458		NA											20	13					0	0	0	0
KIAA1199	57214	broad.mit.edu	37	15	81241181	81241181	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:81241181C>G	uc002bfw.1	+	29	4262	c.4002C>G	c.(4000-4002)ATC>ATG	p.I1334M	KIAA1199_uc010unn.1_Missense_Mutation_p.I1334M|MESDC2_uc002bfx.2_RNA|MESDC2_uc010uno.1_RNA	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1334										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TCCGGCCCATCTGGGTGACAC	0.532		NA											44	118					0	0	0	0
NTRK3	4916	broad.mit.edu	37	15	88420304	88420304	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:88420304G>A	uc002bme.1	-	19	2544	c.2382C>T	c.(2380-2382)GTC>GTT	p.V794V	NTRK3_uc002bmh.2_Silent_p.V772V|NTRK3_uc002bmf.1_Silent_p.V780V	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	794	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTTTGGGGCAGACTCGGGGCC	0.522		NA	T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			7	42					0	0	0	0
ACAN	176	broad.mit.edu	37	15	89382097	89382097	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:89382097G>T	uc010upo.1	+	3	648	c.274G>T	c.(274-276)GGG>TGG	p.G92W	ACAN_uc002bmx.2_Missense_Mutation_p.G92W|ACAN_uc010upp.1_Missense_Mutation_p.G92W|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	92					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGCCACTGAAGGGCGCGTGCG	0.632		NA											7	86					1.07e-07	1.25e-07	1	0
FANCI	55215	broad.mit.edu	37	15	89804006	89804006	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:89804006C>G	uc010bnp.1	+	4	310	c.220C>G	c.(220-222)CAG>GAG	p.Q74E	FANCI_uc002bnm.1_Missense_Mutation_p.Q74E|FANCI_uc002bnn.1_RNA|FANCI_uc002bno.2_Missense_Mutation_p.Q74E|FANCI_uc002bnp.1_5'Flank	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	74					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					TTGTTGTATCCAGTTGGTGGA	0.423		NA						Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				16	83					0	0	0	0
RHCG	51458	broad.mit.edu	37	15	90020344	90020344	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:90020344C>T	uc002bnz.2	-	8	1230	c.1206G>A	c.(1204-1206)CTG>CTA	p.L402L	RHCG_uc002bny.2_Silent_p.L173L|RHCG_uc002boa.2_RNA	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein	402	Helical; (Potential).				amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					GGGCCATGGCCAGGGTCACCA	0.567		NA											27	88					0	0	0	0
PEX11A	8800	broad.mit.edu	37	15	90229763	90229763	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:90229763G>A	uc002boi.2	-	2	166	c.71C>T	c.(70-72)ACA>ATA	p.T24I	PEX11A_uc010upy.1_Intron	NM_003847	NP_003838	O75192	PX11A_HUMAN	peroxisomal biogenesis factor 11 alpha	24	Cytoplasmic (Potential).				cellular lipid metabolic process|peroxisome fission|signal transduction	integral to peroxisomal membrane					0	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			CAACATGCATGTGTACTGAGT	0.378		NA											55	48					0	0	0	0
VPS33B	26276	broad.mit.edu	37	15	91546342	91546342	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr15:91546342G>T	uc002bqp.1	-	17	1599	c.1245C>A	c.(1243-1245)TAC>TAA	p.Y415*	VPS33B_uc002bqq.1_Nonsense_Mutation_p.Y324*|VPS33B_uc010uqu.1_Nonsense_Mutation_p.Y388*	NM_018668	NP_061138	Q9H267	VP33B_HUMAN	vacuolar protein sorting 33B (yeast homolog))	415					cellular membrane fusion|lysosome localization|melanosome localization|platelet alpha granule organization|protein transport|vesicle docking involved in exocytosis	late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm|platelet alpha granule	protein binding			ovary(2)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					TCAGAGATCGGTAATCCTTGG	0.458		NA											73	60					6.86e-32	9.64e-32	1	0
C16orf71	146562	broad.mit.edu	37	16	4797521	4797521	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:4797521G>C	uc002cxn.2	+	9	1920	c.1458G>C	c.(1456-1458)CAG>CAC	p.Q486H		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	486										central_nervous_system(1)	1						CCAAGGGGCAGAGCGCCCAGG	0.667		NA											13	15					0	0	0	0
RSL1D1	26156	broad.mit.edu	37	16	11935671	11935671	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:11935671C>A	uc002dbp.1	-	7	809	c.736G>T	c.(736-738)GAG>TAG	p.E246*	RSL1D1_uc010buv.1_Nonsense_Mutation_p.E245*|RSL1D1_uc010uyw.1_Nonsense_Mutation_p.E26*|RSL1D1_uc010buw.2_RNA	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	246					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						TTCACGCTCTCCCACTTCTGA	0.393		NA											17	24					9.17e-09	1.09e-08	1	0
ABCC1	4363	broad.mit.edu	37	16	16177363	16177363	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:16177363C>T	uc010bvi.2	+	17	2431	c.2256C>T	c.(2254-2256)ATC>ATT	p.I752I	ABCC1_uc010bvj.2_Intron|ABCC1_uc010bvk.2_Silent_p.I752I|ABCC1_uc010bvl.2_Silent_p.I752I|ABCC1_uc010bvm.2_Intron|ABCC1_uc002del.3_Silent_p.I636I	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	752	ABC transporter 1.|Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	ACCTGGAAATCCTGCCCAGTG	0.517		NA											11	60					0	0	0	0
ACSM5	54988	broad.mit.edu	37	16	20451218	20451218	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:20451218G>A	uc002dhe.2	+	13	1780	c.1633G>A	c.(1633-1635)GCT>ACT	p.A545T		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	545					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						AAGGGTGACTGCTCCATACAA	0.468		NA											21	56					0	0	0	0
KIAA0556	23247	broad.mit.edu	37	16	27752188	27752188	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:27752188C>G	uc002dow.2	+	15	2594	c.2570C>G	c.(2569-2571)TCA>TGA	p.S857*		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	857										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						AGGAGGGGCTCAAGGAAGGAT	0.597		NA											9	14					0	0	0	0
NFATC2IP	84901	broad.mit.edu	37	16	28967303	28967303	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:28967303C>G	uc002dru.2	+	4	598	c.583C>G	c.(583-585)CTG>GTG	p.L195V	uc010vct.1_Intron|NFATC2IP_uc002drt.2_Intron|NFATC2IP_uc002drv.2_Translation_Start_Site|NFATC2IP_uc010vdh.1_5'Flank	NM_032815	NP_116204	Q8NCF5	NF2IP_HUMAN	nuclear factor of activated T-cells,	195						cytoplasm|nucleus				ovary(1)	1						CTACAGGGATCTGGACAACTC	0.507		NA											20	55					0	0	0	0
ZNF629	23361	broad.mit.edu	37	16	30793202	30793202	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:30793202C>A	uc002dzs.1	-	3	2655	c.2447G>T	c.(2446-2448)GGC>GTC	p.G816V		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	816					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			AGGGGTCTCGCCCTCACCTTC	0.612		NA											68	72					6.26e-26	8.65e-26	1	0
ZNF668	79759	broad.mit.edu	37	16	31072519	31072519	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:31072519C>A	uc010caf.2	-	3	2087	c.1730G>T	c.(1729-1731)TGT>TTT	p.C577F	ZNF668_uc002eao.2_Missense_Mutation_p.C577F	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	577	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						GGCCTTGGGACAATGGGGGCA	0.652		NA											14	60					1.34e-09	1.61e-09	1	0
MYLK3	91807	broad.mit.edu	37	16	46771856	46771856	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:46771856C>T	uc002eei.3	-	3	884	c.768G>A	c.(766-768)GAG>GAA	p.E256E	MYLK3_uc010vge.1_Intron|MYLK3_uc002eej.1_5'UTR	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	256					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TCCTGAGGTTCTCGCTGGGTG	0.647		NA											23	17					0	0	0	0
SLC6A2	6530	broad.mit.edu	37	16	55690666	55690666	+	Silent	SNP	T	T	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:55690666T>G	uc002eif.2	+	2	171	c.60T>G	c.(58-60)GGT>GGG	p.G20G	SLC6A2_uc010ccd.2_Silent_p.G20G|SLC6A2_uc002eig.2_Silent_p.G20G|SLC6A2_uc002eih.2_Silent_p.G20G	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	20	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	CGGACACGGGTCCAGAGCAGC	0.697		NA											6	30					0	0	0	0
CNOT1	23019	broad.mit.edu	37	16	58594184	58594184	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:58594184G>A	uc002env.2	-	17	2355	c.2062C>T	c.(2062-2064)CCA>TCA	p.P688S	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.P688S|CNOT1_uc002enx.2_Missense_Mutation_p.P688S|CNOT1_uc002enz.1_Missense_Mutation_p.P117S|SNORA50_uc002eoa.1_5'Flank	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	688					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		ACTCCAGGTGGTGGTTGTCTG	0.428		NA											29	43					0	0	0	0
CNOT1	23019	broad.mit.edu	37	16	58610398	58610398	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:58610398G>A	uc002env.2	-	14	1966	c.1673C>T	c.(1672-1674)TCT>TTT	p.S558F	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.S558F|CNOT1_uc002enx.2_Missense_Mutation_p.S558F|CNOT1_uc002enz.1_5'UTR	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	558					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		AAGTATTCGAGACAATTTGGC	0.408		NA											7	39					0	0	0	0
HYDIN	54768	broad.mit.edu	37	16	70843905	70843905	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:70843905C>T	uc002ezr.2	-	85	14789	c.14661G>A	c.(14659-14661)ACG>ACA	p.T4887T	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4888										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CAAATGAGAACGTGCCCTGGA	0.488		NA											46	175					0	0	0	0
BCAR1	9564	broad.mit.edu	37	16	75276935	75276935	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:75276935G>A	uc002fdv.2	-	2	189	c.66C>T	c.(64-66)CTC>CTT	p.L22L	BCAR1_uc010cgu.2_5'UTR|BCAR1_uc010vna.1_Silent_p.L20L|BCAR1_uc010vnb.1_Silent_p.L68L|BCAR1_uc002fdw.2_Silent_p.L22L|BCAR1_uc010vnc.1_Silent_p.L22L|BCAR1_uc010vnd.1_Silent_p.L40L|BCAR1_uc002fdx.2_Silent_p.L40L	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	22	SH3.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGCGGAAGGAGAGCTCATCCG	0.627		NA											14	12					0	0	0	0
ZC3H18	124245	broad.mit.edu	37	16	88696916	88696916	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr16:88696916G>C	uc002fky.2	+	17	2790	c.2590G>C	c.(2590-2592)GGG>CGG	p.G864R	ZC3H18_uc010voz.1_Missense_Mutation_p.G888R|ZC3H18_uc010chw.2_RNA|ZC3H18_uc002fkz.2_Missense_Mutation_p.G134R	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	864						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GAAGTCAGGTGGGAGACTGGG	0.637		NA											8	24					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:7578461C>A	uc002gim.2	-	5	663	c.469G>T	c.(469-471)GTC>TTC	p.V157F	TP53_uc002gig.1_Missense_Mutation_p.V157F|TP53_uc002gih.2_Missense_Mutation_p.V157F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V25F|TP53_uc010cng.1_Missense_Mutation_p.V25F|TP53_uc002gii.1_Missense_Mutation_p.V25F|TP53_uc010cnh.1_Missense_Mutation_p.V157F|TP53_uc010cni.1_Missense_Mutation_p.V157F|TP53_uc002gij.2_Missense_Mutation_p.V157F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.V64F|TP53_uc002gio.2_Missense_Mutation_p.V25F|TP53_uc010vug.1_Missense_Mutation_p.V118F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	157	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		V -> I (in sporadic cancers; somatic mutation).|V -> G (in sporadic cancers; somatic mutation).|V -> A (in sporadic cancers; somatic mutation).|V -> L (in sporadic cancers; somatic mutation).|V -> F (in sporadic cancers; somatic mutation).|V -> D (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.V157F(139)|p.V157I(10)|p.V157D(8)|p.V157G(7)|p.0?(7)|p.V157L(6)|p.V157V(5)|p.V157fs*13(3)|p.R156_I162delRVRAMAI(2)|p.T155fs*23(2)|p.V157del(2)|p.V157fs*9(2)|p.P153fs*22(2)|p.V157fs*22(2)|p.V157fs*24(2)|p.V157_C176del20(1)|p.R156_A161delRVRAMA(1)|p.P151_V173del23(1)|p.V157A(1)|p.R156_R158delRVR(1)|p.R156fs*12(1)|p.R156fs*18(1)|p.R156_A161del(1)|p.V157_M160delVRAM(1)|p.D148fs*23(1)|p.V157_R158delVR(1)|p.S149fs*72(1)|p.T155_A161delTRVRAMA(1)|p.G154fs*22(1)|p.R156fs*20(1)|p.V157_I162delVRAMAI(1)|p.V157fs*23(1)|p.V157fs*21(1)|p.V157fs*25(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATGGCGCGGACGCGGGTGCCG	0.617		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			25	15					7.88e-20	1.06e-19	1	0
MYH10	4628	broad.mit.edu	37	17	8396258	8396258	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:8396258C>T	uc002gll.2	-	31	4297	c.4201G>A	c.(4201-4203)GCG>ACG	p.A1401T	MYH10_uc002glm.2_Missense_Mutation_p.A1432T|MYH10_uc010cnx.2_Missense_Mutation_p.A1410T	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1401	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						AGGGCCTCCGCGTCCTTCAGA	0.537		NA											39	22					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10358338	10358338	+	Silent	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:10358338T>C	uc002gmn.2	-	21	2466	c.2355A>G	c.(2353-2355)CTA>CTG	p.L785L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	785	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGAGTTGAGCTAGCTTTTCAT	0.448		NA											14	39					0	0	0	0
MPRIP	23164	broad.mit.edu	37	17	17077275	17077275	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:17077275G>A	uc002gqu.1	+	18	2531	c.2475G>A	c.(2473-2475)GAG>GAA	p.E825E	MPRIP_uc002gqv.1_Silent_p.E825E|MPRIP_uc002gqw.1_Silent_p.E580E|MPRIP_uc002gqx.1_Silent_p.E1054E|MPRIP_uc002gqy.1_Silent_p.E1054E|MPRIP_uc010cpl.1_Silent_p.E51E|MPRIP_uc010cpm.1_Silent_p.E51E	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	825	Interaction with PPP1R12A.|Potential.					cytoplasm|cytoskeleton	actin binding				0						TCCTCTCGGAGCAGTACTCGC	0.657		NA											8	21					0	0	0	0
NOS2	4843	broad.mit.edu	37	17	26108077	26108077	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:26108077G>A	uc002gzu.2	-	8	1113	c.849C>T	c.(847-849)AAC>AAT	p.N283N	NOS2_uc010crh.1_Silent_p.N283N|NOS2_uc010wab.1_Silent_p.N283N	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	283					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	TGAATTCCACGTTGGCAGGGT	0.632		NA											25	61					0	0	0	0
MYO18A	399687	broad.mit.edu	37	17	27409400	27409400	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:27409400G>T	uc002hdt.1	-	41	6112	c.5954C>A	c.(5953-5955)TCC>TAC	p.S1985Y	MYO18A_uc010wbc.1_Missense_Mutation_p.S1503Y|MYO18A_uc002hds.2_Missense_Mutation_p.S1512Y|MYO18A_uc010csa.1_Missense_Mutation_p.S1933Y|MYO18A_uc002hdu.1_Missense_Mutation_p.S1970Y	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1985					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TGACAACCAGGACTTGACCCC	0.532		NA											21	50					8.05e-18	1.07e-17	1	0
LRRC37B	114659	broad.mit.edu	37	17	30358450	30358450	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:30358450G>T	uc002hgu.2	+	5	1960	c.1949G>T	c.(1948-1950)TGG>TTG	p.W650L	LRRC37B_uc010wbx.1_Missense_Mutation_p.W568L|LRRC37B_uc010csu.2_Intron	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	650	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				TTTCAGGCCTGGCACGGAATG	0.328		NA											11	95					0.000219431	0.00023657	1	0
SPOP	8405	broad.mit.edu	37	17	47696729	47696729	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:47696729G>C	uc010dbk.2	-	5	851	c.219C>G	c.(217-219)CCC>CCG	p.P73P	SPOP_uc002ipb.2_Silent_p.P73P|SPOP_uc002ipc.2_Silent_p.P73P|SPOP_uc002ipd.2_Silent_p.P73P|SPOP_uc002ipe.2_Silent_p.P73P|SPOP_uc002ipf.2_Silent_p.P73P|SPOP_uc002ipg.2_Silent_p.P73P	NM_003563	NP_003554	O43791	SPOP_HUMAN	speckle-type POZ protein	73	MATH.|Required for nuclear localization.				mRNA processing	nucleus	protein binding			prostate(2)|ovary(2)|lung(2)	6						CTAACCCTTTGGGGTTTACTC	0.398		NA								Prostate(2;0.17)			15	27					0	0	0	0
KIF2B	84643	broad.mit.edu	37	17	51902367	51902367	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:51902367A>T	uc002iua.2	+	1	2129	c.1973A>T	c.(1972-1974)AAA>ATA	p.K658I	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	658	Potential.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ATCCAAAAGAAACTGAAATTA	0.458		NA											30	47					0	0	0	0
TBC1D16	125058	broad.mit.edu	37	17	77921571	77921571	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:77921571G>A	uc002jxj.2	-	9	1717	c.1601C>T	c.(1600-1602)TCG>TTG	p.S534L	TBC1D16_uc002jxh.2_Missense_Mutation_p.S172L|TBC1D16_uc002jxi.2_Missense_Mutation_p.S159L|TBC1D16_uc002jxk.1_Missense_Mutation_p.S172L	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	534	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			CACCAGGTCCGACATCCCTTG	0.602		NA											44	10					0	0	0	0
IMPA2	3613	broad.mit.edu	37	18	11999122	11999122	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr18:11999122G>A	uc002kqp.1	+	2	380	c.166G>A	c.(166-168)GAA>AAA	p.E56K	IMPA2_uc002kqo.1_5'UTR|IMPA2_uc010dlb.1_5'UTR|IMPA2_uc002kqq.1_5'UTR	NM_014214	NP_055029	O14732	IMPA2_HUMAN	inositol(myo)-1(or 4)-monophosphatase 2	56					inositol phosphate dephosphorylation|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(2)	2					Lithium(DB01356)	TCTTGTGACAGAAACAGATCA	0.423		NA											18	50					0	0	0	0
SLC39A6	25800	broad.mit.edu	37	18	33689681	33689681	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr18:33689681T>A	uc010dmy.2	-	10	2433	c.2143A>T	c.(2143-2145)AGT>TGT	p.S715C		NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	715	Cytoplasmic (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						CCATGGTCACTAGCATCATTG	0.328		NA											33	69					0	0	0	0
DCC	1630	broad.mit.edu	37	18	50731677	50731677	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr18:50731677C>A	uc002lfe.1	+	10	2252	c.1665C>A	c.(1663-1665)AAC>AAA	p.N555K	DCC_uc010xdr.1_Missense_Mutation_p.N403K|DCC_uc010dpf.1_Missense_Mutation_p.N210K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	555	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCTATGCAAACGGTCCAGTCC	0.478		NA											48	102					9.58e-29	1.34e-28	1	0
HMHA1	23526	broad.mit.edu	37	19	1080350	1080350	+	Silent	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:1080350T>A	uc002lqz.1	+	14	2031	c.1800T>A	c.(1798-1800)ACT>ACA	p.T600T	HMHA1_uc010xgd.1_Silent_p.T616T|HMHA1_uc010xge.1_Silent_p.T440T|HMHA1_uc002lra.1_Silent_p.T440T|HMHA1_uc002lrb.1_Silent_p.T483T|HMHA1_uc002lrc.1_Silent_p.T235T|HMHA1_uc002lrd.1_5'Flank|HMHA1_uc010dsd.1_5'Flank	NM_012292	NP_036424	Q92619	HMHA1_HUMAN	minor histocompatibility antigen HA-1	600					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding			lung(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGGTGCACTGAGGGCACAC	0.706		NA											6	29					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9045667	9045667	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:9045667G>A	uc002mkp.2	-	5	36168	c.35964C>T	c.(35962-35964)GCC>GCT	p.A11988A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11990	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGTTGTCTTGGCCACAGTGG	0.493		NA											11	47					0	0	0	0
ZNF177	7730	broad.mit.edu	37	19	9492182	9492182	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:9492182G>C	uc002mli.2	+	12	1358	c.695G>C	c.(694-696)GGA>GCA	p.G232A	ZNF177_uc002mlj.2_Missense_Mutation_p.G182A|ZNF177_uc002mlk.2_Missense_Mutation_p.G232A	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	232					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCTCACACTGGAGAGAAGCCT	0.468		NA											34	92					0	0	0	0
RAD23A	5886	broad.mit.edu	37	19	13060139	13060139	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:13060139A>T	uc002mvw.1	+	7	839	c.730A>T	c.(730-732)ATG>TTG	p.M244L	RAD23A_uc002mvx.1_Missense_Mutation_p.M243L|RAD23A_uc002mvz.1_Missense_Mutation_p.M243L|RAD23A_uc002mwa.1_Missense_Mutation_p.M244L|RAD23A_uc002mvy.1_Missense_Mutation_p.M78L|RAD23A_uc010xmw.1_Missense_Mutation_p.M79L	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	244					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						GTTCCAGAACATGCGGCAGGT	0.637		NA						NER					34	14					0	0	0	0
EPS15L1	58513	broad.mit.edu	37	19	16528864	16528864	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:16528864C>A	uc002ndz.1	-	11	1008	c.1002G>T	c.(1000-1002)GCG>GCT	p.A334A	EPS15L1_uc002ndx.2_Silent_p.A334A|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Silent_p.A224A|EPS15L1_uc010xpf.1_Silent_p.A237A|EPS15L1_uc002nea.1_Silent_p.A334A|EPS15L1_uc010eah.1_Silent_p.A334A|EPS15L1_uc002neb.1_Silent_p.A180A|EPS15L1_uc002nec.1_Silent_p.A334A	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	334	EH 3.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						ACATAGCTAACGCGAATTGGT	0.562		NA									OREG0025334	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	20					6.2e-25	8.54e-25	1	0
SIN3B	23309	broad.mit.edu	37	19	16962311	16962311	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:16962311C>T	uc002ney.1	+	6	829	c.815C>T	c.(814-816)CCC>CTC	p.P272L	SIN3B_uc002new.2_Missense_Mutation_p.P272L|SIN3B_uc002nex.2_Missense_Mutation_p.P204L|SIN3B_uc002nez.1_Missense_Mutation_p.P272L	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	272					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						CGCTCCCGGCCCTCGCTCCTC	0.652		NA											11	49					0	0	0	0
CPAMD8	27151	broad.mit.edu	37	19	17039991	17039991	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:17039991G>T	uc002nfb.2	-	24	3078	c.3046C>A	c.(3046-3048)CGC>AGC	p.R1016S		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	969						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CGGGTGAGGCGCAGTGGCCGC	0.582		NA											19	13					2.46e-09	2.96e-09	1	0
FCHO1	23149	broad.mit.edu	37	19	17892276	17892276	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:17892276C>T	uc010ebb.2	+	21	1945	c.1756C>T	c.(1756-1758)CCC>TCC	p.P586S	FCHO1_uc002nhg.3_Missense_Mutation_p.P586S|FCHO1_uc002nhh.2_Missense_Mutation_p.P586S|FCHO1_uc010xpw.1_Missense_Mutation_p.P536S|FCHO1_uc002nhi.2_Missense_Mutation_p.P42S|FCHO1_uc002nhj.2_5'UTR	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	586										breast(1)	1						TTCCCTGAGCCCCTCCCCACT	0.637		NA											18	12					0	0	0	0
WDR62	284403	broad.mit.edu	37	19	36557244	36557244	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:36557244C>A	uc002odc.2	+	5	567	c.476C>A	c.(475-477)GCG>GAG	p.A159E	WDR62_uc002odd.2_Missense_Mutation_p.A159E|WDR62_uc002odb.2_Missense_Mutation_p.A159E	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	159	WD 2.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TATGGTGTGGCGTGTGTGGCC	0.562		NA											7	6					1.26e-09	1.52e-09	1	0
ZFP82	284406	broad.mit.edu	37	19	36884242	36884242	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:36884242C>A	uc002ody.1	-	5	1235	c.1000G>T	c.(1000-1002)GGT>TGT	p.G334C		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	334					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						GGTTTCTCACCAGTATGAAGT	0.433		NA											24	103					7.88e-14	1.01e-13	1	0
ZNF829	374899	broad.mit.edu	37	19	37382725	37382725	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:37382725G>A	uc002ofa.1	-	6	1330	c.968C>T	c.(967-969)CCT>CTT	p.P323L	ZNF345_uc002oez.2_Intron	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	323					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ACATTCATAAGGTTTCTCACC	0.403		NA											17	68					0	0	0	0
ZNF585B	92285	broad.mit.edu	37	19	37676276	37676276	+	Silent	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:37676276A>G	uc002ofq.2	-	5	2417	c.2163T>C	c.(2161-2163)GCT>GCC	p.A721A	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Silent_p.A535A	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	721	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCCCACACTCAGCACACACGT	0.463		NA											37	115					0	0	0	0
FAM98C	147965	broad.mit.edu	37	19	38893838	38893838	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:38893838C>T	uc002oin.1	+	1	64	c.45C>T	c.(43-45)GCC>GCT	p.A15A	FAM98C_uc002oio.1_Silent_p.A15A|FAM98C_uc010xtz.1_Silent_p.A15A	NM_174905	NP_777565	Q17RN3	FA98C_HUMAN	hypothetical protein LOC147965	15										skin(1)	1	all_cancers(60;3.95e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCGCGGTGGCCCAGGACCTGC	0.697		NA											18	11					0	0	0	0
HNRNPL	3191	broad.mit.edu	37	19	39322049	39322049	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:39322049T>A	uc002ojj.1	-	6	867	c.787A>T	c.(787-789)AGC>TGC	p.S263C	ECH1_uc002oji.2_Missense_Mutation_p.S54C|ECH1_uc010xuk.1_Missense_Mutation_p.S54C|HNRNPL_uc010ege.1_Intron	NM_001005335	NP_001005335	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	Error:Variant_position_missing_in_P14866_after_alignment					nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			GACTCATAGCTGTGGTCTGGG	0.567		NA											40	80					0	0	0	0
PRX	57716	broad.mit.edu	37	19	40901621	40901621	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:40901621C>T	uc002onr.2	-	7	2907	c.2638G>A	c.(2638-2640)GAG>AAG	p.E880K	PRX_uc002onq.2_Missense_Mutation_p.E741K|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	880					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TCCACCCGCTCTCCCTTGCCC	0.632		NA											9	26					0	0	0	0
IRGQ	126298	broad.mit.edu	37	19	44096234	44096234	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:44096234C>T	uc002oww.2	-	2	1934	c.1816G>A	c.(1816-1818)GAT>AAT	p.D606N	IRGQ_uc010eiv.2_Missense_Mutation_p.D606N	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	606	Ala-rich.						protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				CGCATCTCATCGAGAGCCTGC	0.682		NA											16	93					0	0	0	0
GYS1	2997	broad.mit.edu	37	19	49484827	49484827	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:49484827C>A	uc002plp.2	-	8	1370	c.1129G>T	c.(1129-1131)GTG>TTG	p.V377L	GYS1_uc010xzy.1_Missense_Mutation_p.V10L|GYS1_uc010emm.2_Missense_Mutation_p.V313L|GYS1_uc010xzz.1_Missense_Mutation_p.V297L|GYS1_uc010yaa.1_RNA	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	377					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		AGGGTTTCCACGTTGAAATTG	0.597		NA											26	18					2.5e-26	3.46e-26	1	0
LILRA2	11027	broad.mit.edu	37	19	55087488	55087488	+	Missense_Mutation	SNP	C	C	A	rs140195058		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:55087488C>A	uc002qgg.3	+	6	1256	c.1167C>A	c.(1165-1167)CAC>CAA	p.H389Q	LILRA2_uc010ern.2_Missense_Mutation_p.H389Q|LILRA2_uc002qgf.2_Missense_Mutation_p.H389Q|LILRA2_uc010yfe.1_Missense_Mutation_p.H389Q|LILRA2_uc010yff.1_Missense_Mutation_p.H377Q|LILRA2_uc010ero.2_Missense_Mutation_p.H377Q|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	389	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CCTCAGCCCACGTGGGGACCT	0.622		NA											43	78					9.15e-12	1.14e-11	1	0
NLRP8	126205	broad.mit.edu	37	19	56473475	56473475	+	Missense_Mutation	SNP	A	A	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:56473475A>C	uc002qmh.2	+	4	2156	c.2085A>C	c.(2083-2085)TTA>TTC	p.L695F	NLRP8_uc010etg.2_Missense_Mutation_p.L695F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	695						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GGCAAGACTTATGCTCTGTGT	0.493		NA											44	85					0	0	0	0
AURKC	6795	broad.mit.edu	37	19	57744010	57744010	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:57744010C>G	uc002qoe.2	+	4	586	c.397C>G	c.(397-399)CAG>GAG	p.Q133E	AURKC_uc002qoc.2_Missense_Mutation_p.Q114E|AURKC_uc002qod.2_Missense_Mutation_p.Q99E|AURKC_uc010etv.2_Missense_Mutation_p.Q130E	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	133	Protein kinase.				cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		CAAGGAGCTGCAGAAAAGCGA	0.542		NA											15	67					0	0	0	0
TTC15	51112	broad.mit.edu	37	2	3469391	3469391	+	Silent	SNP	G	G	C	rs116179331	byFrequency	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:3469391G>C	uc002qxm.1	+	9	1907	c.1701G>C	c.(1699-1701)GCG>GCC	p.A567A	TTC15_uc002qxn.1_Silent_p.A567A|TTC15_uc010ewm.1_Silent_p.A573A	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	567	TPR 1.						binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		CCGTGGAGGCGTATCATTCGG	0.527		NA											53	67					0	0	0	0
FOSL2	2355	broad.mit.edu	37	2	28634831	28634831	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:28634831T>C	uc002rma.2	+	4	1306	c.497T>C	c.(496-498)CTG>CCG	p.L166P	FOSL2_uc010ymi.1_Missense_Mutation_p.L127P	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	166	Leucine-zipper.				cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					AAGTCAGGCCTGCAGAAGGAG	0.582		NA											3	58					0	0	0	0
VRK2	7444	broad.mit.edu	37	2	58373570	58373570	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:58373570G>T	uc002rzo.2	+	15	1888	c.1143G>T	c.(1141-1143)GAG>GAT	p.E381D	VRK2_uc010fcb.2_Missense_Mutation_p.E381D|VRK2_uc002rzs.2_Missense_Mutation_p.E381D|VRK2_uc002rzr.2_Missense_Mutation_p.E381D|VRK2_uc010fcc.2_Missense_Mutation_p.E263D|VRK2_uc002rzv.2_Missense_Mutation_p.E381D|VRK2_uc010fcd.2_Missense_Mutation_p.E358D|VRK2_uc002rzp.2_Missense_Mutation_p.E381D|VRK2_uc010ypg.1_Missense_Mutation_p.E381D|VRK2_uc002rzq.2_Missense_Mutation_p.E381D|VRK2_uc002rzu.2_Missense_Mutation_p.E381D|VRK2_uc002rzt.2_Missense_Mutation_p.E263D	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	381						integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						TGCAGAAAGAGGAGAAACTGA	0.403		NA											11	40					2.81e-09	3.37e-09	1	0
ALMS1	7840	broad.mit.edu	37	2	73718480	73718480	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:73718480C>T	uc002sje.1	+	12	9508	c.9397C>T	c.(9397-9399)CTT>TTT	p.L3133F	ALMS1_uc002sjf.1_Missense_Mutation_p.L3089F|ALMS1_uc002sjg.2_Missense_Mutation_p.L2519F|ALMS1_uc002sjh.1_Missense_Mutation_p.L2519F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3131					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACAGCCTTCTCTTCCAGACAG	0.393		NA											42	67					0	0	0	0
MOGS	7841	broad.mit.edu	37	2	74691753	74691753	+	Missense_Mutation	SNP	A	A	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:74691753A>C	uc010ffj.2	-	2	612	c.449T>G	c.(448-450)TTC>TGC	p.F150C	MOGS_uc010ffh.2_5'Flank|MOGS_uc010yrt.1_Missense_Mutation_p.F31C|MOGS_uc010ffi.2_Missense_Mutation_p.F44C|MOGS_uc010yru.1_Intron	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	150	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						GCCGTCGTGGAACTCCCAGCC	0.657		NA											26	55					0	0	0	0
FAM176A	84141	broad.mit.edu	37	2	75720630	75720630	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:75720630C>T	uc002sni.2	-	4	669	c.191G>A	c.(190-192)AGG>AAG	p.R64K	FAM176A_uc002snj.1_Missense_Mutation_p.R51K|FAM176A_uc002snk.1_Missense_Mutation_p.R64K	NM_001135032	NP_001128504	Q9H8M9	F176A_HUMAN	family with sequence similarity 176, member A	64					apoptosis|autophagy	endoplasmic reticulum membrane|integral to membrane|lysosomal membrane|plasma membrane					0						GGGACGCCGCCTGCAGTCTGT	0.607		NA											25	29					0	0	0	0
SNRNP200	23020	broad.mit.edu	37	2	96963242	96963242	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:96963242C>A	uc002svu.2	-	11	1322	c.1236G>T	c.(1234-1236)GAG>GAT	p.E412D		NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	412						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						AAACCAGGTCCTCCAAGTCCA	0.512		NA											11	18					5.17e-11	6.38e-11	1	0
ANKRD36	375248	broad.mit.edu	37	2	97869830	97869830	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:97869830G>C	uc010yva.1	+	49	3229	c.2985G>C	c.(2983-2985)TTG>TTC	p.L995F	ANKRD36_uc002sxp.3_RNA	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	995											0						CACCAGGCTTGAAGGTAATGA	0.308		NA											4	11					0	0	0	0
ANAPC1	64682	broad.mit.edu	37	2	112541901	112541901	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:112541901T>A	uc002thi.2	-	41	5241	c.4994A>T	c.(4993-4995)CAG>CTG	p.Q1665L		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	1665					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						CCAGCTTACCTGCTTTAAAAG	0.438		NA											37	138					0	0	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121995390	121995390	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:121995390G>A	uc002tmx.2	-	9	990	c.897C>T	c.(895-897)CCC>CCT	p.P299P	TFCP2L1_uc010flr.2_Silent_p.P299P	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	299					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					CACTGCCCACGGGCAGGGCCT	0.652		NA											13	22					0	0	0	0
NCKAP5	344148	broad.mit.edu	37	2	133721320	133721320	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:133721320C>T	uc002ttp.2	-	8	926	c.552G>A	c.(550-552)TTG>TTA	p.L184L	NCKAP5_uc002ttq.2_Silent_p.L184L|NCKAP5_uc002tts.1_Silent_p.L159L	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	184	Potential.						protein binding				0						TCTCTAATAGCAATTTGGTCT	0.368		NA											48	102					0	0	0	0
TANC1	85461	broad.mit.edu	37	2	160035608	160035608	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:160035608C>T	uc002uag.2	+	14	2718	c.2444C>T	c.(2443-2445)CCG>CTG	p.P815L	TANC1_uc010fol.1_Missense_Mutation_p.P709L|TANC1_uc010zcm.1_Missense_Mutation_p.P807L|TANC1_uc010fom.1_Missense_Mutation_p.P621L|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	815						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						TTCTGCCACCCGTCCTTCAGG	0.577		NA											45	73					0	0	0	0
KCNH7	90134	broad.mit.edu	37	2	163374347	163374347	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:163374347C>A	uc002uch.1	-	4	997	c.785G>T	c.(784-786)AGA>ATA	p.R262I	KCNH7_uc002uci.2_Missense_Mutation_p.R262I	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	262	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTCCCTTGATCTGGAATGGGA	0.493		NA											42	56					4.33e-17	5.7e-17	1	0
KCNH7	90134	broad.mit.edu	37	2	163393462	163393462	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:163393462G>T	uc002uch.1	-	3	648	c.436C>A	c.(436-438)CCA>ACA	p.P146T	KCNH7_uc002uci.2_Missense_Mutation_p.P146T	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	146	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GGTAATATTGGGTTTACCCTC	0.378		NA											63	98					1.84e-34	2.6e-34	1	0
ABCB11	8647	broad.mit.edu	37	2	169780147	169780147	+	Silent	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:169780147T>C	uc002ueo.1	-	28	4077	c.3951A>G	c.(3949-3951)GGA>GGG	p.G1317G	ABCB11_uc010zda.1_Silent_p.G735G|ABCB11_uc010zdb.1_Silent_p.G793G	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1317	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TGATGGGGGATCCAGTGGTGA	0.468		NA											19	58					0	0	0	0
EVX2	344191	broad.mit.edu	37	2	176947080	176947080	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:176947080G>T	uc010zeu.1	-	2	711	c.525C>A	c.(523-525)AGC>AGA	p.S175R		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	175						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		CCAGCGCCGCGCTCCCGCCGC	0.721		NA											9	21					1.59e-06	1.8e-06	1	0
TTN	7273	broad.mit.edu	37	2	179466061	179466061	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179466061C>T	uc010zfg.1	-	236	48183	c.47959G>A	c.(47959-47961)GCA>ACA	p.A15987T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A9682T|TTN_uc010zfi.1_Missense_Mutation_p.A9615T|TTN_uc010zfj.1_Missense_Mutation_p.A9490T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16914							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGTTTTCTGCTCGCACACGG	0.433		NA											30	51					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179578646	179578646	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179578646G>T	uc010zfg.1	-	89	23231	c.23007C>A	c.(23005-23007)TGC>TGA	p.C7669*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.C4330*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8596							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGAAGCTGTGCAGCTGTCTT	0.408		NA											25	35					5.62e-17	7.4e-17	1	0
TTN	7273	broad.mit.edu	37	2	179587165	179587165	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179587165A>T	uc010zfg.1	-	74	18841	c.18617T>A	c.(18616-18618)GTG>GAG	p.V6206E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.V2867E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7133							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACCAGCACACTTGGATGGG	0.388		NA											63	82					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179611834	179611834	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179611834G>A	uc002unb.2	-	46	15517	c.15293C>T	c.(15292-15294)CCC>CTC	p.P5098L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTCCTGGGGGTGTGGAGTA	0.522		NA											58	89					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179612195	179612195	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179612195T>C	uc002unb.2	-	46	15156	c.14932A>G	c.(14932-14934)AGT>GGT	p.S4978G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTCTTCACTGGTTGTACTT	0.383		NA											34	92					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179613197	179613197	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179613197G>A	uc002unb.2	-	46	14154	c.13930C>T	c.(13930-13932)CAT>TAT	p.H4644Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	758							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTATAATGTATTTCCTGC	0.358		NA											67	124					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179639115	179639115	+	Silent	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:179639115T>C	uc010zfg.1	-	30	7100	c.6876A>G	c.(6874-6876)CCA>CCG	p.P2292P	TTN_uc010zfh.1_Silent_p.P2246P|TTN_uc010zfi.1_Silent_p.P2246P|TTN_uc010zfj.1_Silent_p.P2246P|TTN_uc002unb.2_Silent_p.P2292P|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2292							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTATATTTTCTGGGGATACAA	0.383		NA											60	95					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196891496	196891496	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:196891496T>A	uc002utj.3	-	7	756	c.655A>T	c.(655-657)AGG>TGG	p.R219W		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	219	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATGGATTTCCTTACACTAAGA	0.294		NA											8	23					0	0	0	0
ERBB4	2066	broad.mit.edu	37	2	212495206	212495206	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:212495206C>A	uc002veg.1	-	17	2158	c.2060G>T	c.(2059-2061)AGA>ATA	p.R687I	ERBB4_uc002veh.1_Missense_Mutation_p.R687I|ERBB4_uc010zji.1_Missense_Mutation_p.R677I|ERBB4_uc010zjj.1_Missense_Mutation_p.R677I|ERBB4_uc010fut.1_Missense_Mutation_p.R687I	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	687	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CAAGAATCTTCTCAAGGCTCT	0.388		NA								TSP Lung(8;0.080)			25	75					3.08e-08	3.63e-08	1	0
SPHKAP	80309	broad.mit.edu	37	2	228884000	228884000	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr2:228884000C>G	uc002vpq.2	-	7	1617	c.1570G>C	c.(1570-1572)GTG>CTG	p.V524L	SPHKAP_uc002vpp.2_Missense_Mutation_p.V524L|SPHKAP_uc010zlx.1_Missense_Mutation_p.V524L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	524						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTCGAGACCACTTGCTCCATT	0.512		NA											30	16					0	0	0	0
PAK7	57144	broad.mit.edu	37	20	9525142	9525142	+	Splice_Site	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:9525142C>A	uc002wnl.2	-	9	2289	c.1744_splice	c.e9-1	p.I582_splice	PAK7_uc002wnk.2_Splice_Site_p.I582_splice|PAK7_uc002wnj.2_Splice_Site_p.I582_splice|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7								ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ACAACTTTATCTGAAAAGGAA	0.388		NA											12	45					4.38e-07	5.04e-07	1	0
SEL1L2	80343	broad.mit.edu	37	20	13847353	13847353	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:13847353C>A	uc010gcf.2	-	15	1481	c.1399G>T	c.(1399-1401)GTG>TTG	p.V467L	SEL1L2_uc002woq.3_Missense_Mutation_p.V328L|SEL1L2_uc010zrl.1_Missense_Mutation_p.V467L|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	467	Extracellular (Potential).|Sel1-like 9.					integral to membrane	binding			ovary(2)	2						TTTACCTCCACAGCAGTTCTG	0.398		NA											32	51					6.01e-18	8e-18	1	0
SEL1L2	80343	broad.mit.edu	37	20	13847424	13847424	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:13847424G>A	uc010gcf.2	-	15	1410	c.1328C>T	c.(1327-1329)CCC>CTC	p.P443L	SEL1L2_uc002woq.3_Missense_Mutation_p.P304L|SEL1L2_uc010zrl.1_Missense_Mutation_p.P443L|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	443	Extracellular (Potential).|Sel1-like 9.					integral to membrane	binding			ovary(2)	2						AATGGCAAGGGGCTGCCCACT	0.408		NA											32	41					0	0	0	0
NINL	22981	broad.mit.edu	37	20	25456905	25456905	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:25456905C>A	uc002wux.1	-	17	3096	c.3022G>T	c.(3022-3024)GGG>TGG	p.G1008W	NINL_uc010gdn.1_Intron	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1008					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TTGTGACACCCAGGCTCCAGG	0.677		NA											35	25					1.6e-16	2.1e-16	1	0
DEFB118	117285	broad.mit.edu	37	20	29960690	29960690	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:29960690G>C	uc002wvr.2	+	2	115	c.89G>C	c.(88-90)AGA>ACA	p.R30T		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	30					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TGCTGGAACAGATCAGGGCAC	0.403		NA											6	30					0	0	0	0
C20orf117	140710	broad.mit.edu	37	20	35422872	35422872	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:35422872C>A	uc002xgd.1	-	14	3226	c.2899G>T	c.(2899-2901)GGG>TGG	p.G967W	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	967											0		Myeloproliferative disorder(115;0.00874)				TCTGGATCCCCTGGCTCGGAG	0.612		NA											28	32					1.77e-15	2.28e-15	1	0
KIAA1755	85449	broad.mit.edu	37	20	36869128	36869128	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:36869128G>T	uc002xhy.1	-	3	1677	c.1405C>A	c.(1405-1407)CCT>ACT	p.P469T	KIAA1755_uc002xhz.1_Missense_Mutation_p.P469T	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	469										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				TTGAGCCCAGGAGTGGGGGGC	0.552		NA											17	43					4.76e-15	6.13e-15	1	0
SPATA2	9825	broad.mit.edu	37	20	48522917	48522917	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:48522917G>T	uc010gie.2	-	3	1152	c.802C>A	c.(802-804)CTG>ATG	p.L268M	SPATA2_uc002xuw.2_Missense_Mutation_p.L268M|SPATA2_uc010zyn.1_Missense_Mutation_p.L131M	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	268					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			GAGGCCTTCAGGGGTGGCTTC	0.617		NA											30	38					2.85e-18	3.82e-18	1	0
FAM65C	140876	broad.mit.edu	37	20	49225879	49225879	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:49225879G>C	uc002xvm.2	-	8	897	c.579C>G	c.(577-579)ATC>ATG	p.I193M	FAM65C_uc010zyt.1_Missense_Mutation_p.I197M|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.I193M	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	193										ovary(2)	2						GGGCCCCCTCGATGAGCCACA	0.647		NA											6	11					0	0	0	0
DOK5	55816	broad.mit.edu	37	20	53227044	53227044	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:53227044G>C	uc002xwy.2	+	6	937	c.717G>C	c.(715-717)CAG>CAC	p.Q239H	DOK5_uc010gin.2_Missense_Mutation_p.Q131H|DOK5_uc002xwz.2_Missense_Mutation_p.Q101H	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	239							insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			GCTTGCTACAGAGTGTGAAAA	0.498		NA											11	31					0	0	0	0
TAF4	6874	broad.mit.edu	37	20	60584179	60584179	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:60584179T>A	uc002ybs.2	-	5	1813	c.1813A>T	c.(1813-1815)AAA>TAA	p.K605*		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	605	TAFH.				interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GAAGCCAGTTTTATTAACGTA	0.348		NA											38	51					0	0	0	0
OPRL1	4987	broad.mit.edu	37	20	62729191	62729191	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:62729191C>G	uc002yic.2	+	4	672	c.270C>G	c.(268-270)ATC>ATG	p.I90M	OPRL1_uc002yid.2_Missense_Mutation_p.I90M|OPRL1_uc002yif.3_Missense_Mutation_p.I85M	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	90	Helical; Name=2; (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					ATATTTACATCTTTAACCTGG	0.577		NA											42	116					0	0	0	0
MYT1	4661	broad.mit.edu	37	20	62837126	62837126	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr20:62837126G>T	uc002yii.2	+	6	734	c.370G>T	c.(370-372)GAG>TAG	p.E124*	MYT1_uc002yih.2_Nonsense_Mutation_p.E124*|MYT1_uc002yij.2_5'Flank	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	124					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					AGGACAGGACGAGATTCATCG	0.587		NA											7	24					8.13e-05	8.83e-05	1	0
MICAL3	57553	broad.mit.edu	37	22	18273802	18273802	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr22:18273802C>A	uc002zng.3	-	31	6139	c.5786G>T	c.(5785-5787)CGA>CTA	p.R1929L	MICAL3_uc011agl.1_Missense_Mutation_p.R1845L|MICAL3_uc010grd.1_Missense_Mutation_p.R45L|MICAL3_uc010gre.1_RNA	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1929	Potential.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CTGCTGCAGTCGACTCTGCCG	0.662		NA											9	14					1.13e-05	1.26e-05	1	0
RIMBP3	85376	broad.mit.edu	37	22	20458180	20458180	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr22:20458180T>A	uc002zsd.3	-	1	3607	c.3122A>T	c.(3121-3123)TAC>TTC	p.Y1041F		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			CTGGAAGGTGTAGCAGCTCAC	0.642		NA											4	29					0	0	0	0
ZNF280B	140883	broad.mit.edu	37	22	22843194	22843194	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr22:22843194G>C	uc002zwc.1	-	4	1306	c.530C>G	c.(529-531)ACT>AGT	p.T177S	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TACTTCGAAAGTGGAAAGTTG	0.383		NA											68	66					0	0	0	0
ADRBK2	157	broad.mit.edu	37	22	26040617	26040617	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr22:26040617G>A	uc003abx.3	+	3	396	c.249G>A	c.(247-249)GTG>GTA	p.V83V	ADRBK2_uc010gux.2_Silent_p.V83V|ADRBK2_uc003abw.2_5'UTR|ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	83	N-terminal.|RGS.						ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	TACCTCAGGTGAAGTTTTATG	0.279		NA											8	15					0	0	0	0
HPS4	89781	broad.mit.edu	37	22	26860632	26860632	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr22:26860632T>C	uc003acl.2	-	11	1623	c.964A>G	c.(964-966)AGG>GGG	p.R322G	HPS4_uc003aci.2_Missense_Mutation_p.R317G|HPS4_uc003acj.2_Missense_Mutation_p.R186G|HPS4_uc003ack.2_Missense_Mutation_p.R113G|HPS4_uc003acn.2_Missense_Mutation_p.R168G|HPS4_uc010gvd.1_Missense_Mutation_p.R340G|HPS4_uc003ach.2_Missense_Mutation_p.R57G	NM_022081	NP_071364	Q9NQG7	HPS4_HUMAN	light ear protein isoform a	322					lysosome organization|positive regulation of eye pigmentation|protein stabilization|protein targeting	lysosome|melanosome|membrane fraction|platelet dense granule	protein homodimerization activity				0						TTCTCCTTCCTGCCATCTGGA	0.587		NA							Hermansky-Pudlak_syndrome				16	67					0	0	0	0
CAND2	23066	broad.mit.edu	37	3	12868994	12868994	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:12868994C>T	uc003bxk.2	+	13	3315	c.3266C>T	c.(3265-3267)GCG>GTG	p.A1089V	CAND2_uc003bxj.2_Missense_Mutation_p.A972V	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	1089					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						GTGCGGAAGGCGGCCTTTGAA	0.562		NA											3	41					0	0	0	0
EPM2AIP1	9852	broad.mit.edu	37	3	37034472	37034472	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:37034472C>A	uc003cgk.2	-	1	324	c.97G>T	c.(97-99)GAG>TAG	p.E33*	MLH1_uc011aye.1_5'Flank|MLH1_uc003cgl.2_5'Flank|MLH1_uc011ayb.1_5'Flank|MLH1_uc010hge.2_5'Flank|MLH1_uc003cgn.3_5'Flank|MLH1_uc011ayc.1_5'Flank|MLH1_uc011ayd.1_5'Flank|MLH1_uc003cgo.2_5'Flank	NM_014805	NP_055620	Q7L775	EPMIP_HUMAN	EPM2A interacting protein 1	33						endoplasmic reticulum					0						CCATCGCCCTCCGGAGGCTCC	0.607		NA											23	15					3.84e-06	4.32e-06	1	0
ZDHHC3	51304	broad.mit.edu	37	3	45000811	45000811	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:45000811G>A	uc003cod.2	-	2	392	c.118C>T	c.(118-120)CGT>TGT	p.R40C	ZDHHC3_uc003cog.2_Missense_Mutation_p.R40C|ZDHHC3_uc011bad.1_Missense_Mutation_p.R40C	NM_016598	NP_057682	Q9NYG2	ZDHC3_HUMAN	zinc finger, DHHC-type containing 3 isoform 2	40	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00943)|KIRC - Kidney renal clear cell carcinoma(197;0.053)|Kidney(197;0.0665)		CAGCCGTCACGGATAAACCAC	0.547		NA											45	36					0	0	0	0
DOCK3	1795	broad.mit.edu	37	3	51399418	51399418	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:51399418A>T	uc011bds.1	+	48	5158	c.5135A>T	c.(5134-5136)CAC>CTC	p.H1712L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1712						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GACCTGTACCACCACATGCAG	0.552		NA											9	5					0	0	0	0
ROBO1	6091	broad.mit.edu	37	3	78701019	78701019	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:78701019T>A	uc003dqe.2	-	19	2883	c.2675A>T	c.(2674-2676)GAT>GTT	p.D892V	ROBO1_uc003dqb.2_Missense_Mutation_p.D853V|ROBO1_uc003dqc.2_Missense_Mutation_p.D856V|ROBO1_uc003dqd.2_Missense_Mutation_p.D856V|ROBO1_uc010hoh.2_Missense_Mutation_p.D84V|ROBO1_uc011bgl.1_Missense_Mutation_p.D464V	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	892	Extracellular (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CTTCACCACATCTGAAATCTG	0.498		NA											51	39					0	0	0	0
CADM2	253559	broad.mit.edu	37	3	85984983	85984983	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:85984983C>A	uc003dqj.2	+	6	1366	c.740C>A	c.(739-741)ACT>AAT	p.T247N	CADM2_uc003dqk.2_Missense_Mutation_p.T256N|CADM2_uc003dql.2_Missense_Mutation_p.T249N	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	247	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		TTAATTTTGACTTGTGAATCC	0.308		NA											57	43					6.13e-21	8.29e-21	1	0
CRYBG3	131544	broad.mit.edu	37	3	97596761	97596761	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:97596761G>T	uc003drx.2	+	1	943	c.879G>T	c.(877-879)CTG>CTT	p.L293L		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						ATCAGTATCTGCAGACTTCCC	0.418		NA											10	56					7.04e-09	8.38e-09	1	0
ZBTB11	27107	broad.mit.edu	37	3	101390839	101390839	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:101390839T>A	uc003dve.3	-	2	759	c.529A>T	c.(529-531)AAA>TAA	p.K177*	ZBTB11_uc003dvf.2_Nonsense_Mutation_p.K177*	NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AGTTCATGTTTGGATACTGGC	0.388		NA											14	59					0	0	0	0
DZIP3	9666	broad.mit.edu	37	3	108335438	108335438	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:108335438G>A	uc003dxd.2	+	5	731	c.309G>A	c.(307-309)TTG>TTA	p.L103L	DZIP3_uc003dxf.1_Silent_p.L103L|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Silent_p.L103L	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	103					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TTCCTGCTTTGACTTTACGTT	0.353		NA											20	62					0	0	0	0
POLQ	10721	broad.mit.edu	37	3	121260261	121260261	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:121260261G>T	uc003eee.3	-	3	538	c.409C>A	c.(409-411)CGG>AGG	p.R137R		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	137	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		GCTTTCTTCCGCATTTCCAAA	0.353		NA						DNA_polymerases_(catalytic_subunits)					47	176					1.01e-21	1.37e-21	1	0
SEMA5B	54437	broad.mit.edu	37	3	122629074	122629074	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:122629074C>A	uc003efz.1	-	23	3676	c.3372G>T	c.(3370-3372)ACG>ACT	p.T1124T	SEMA5B_uc011bju.1_Silent_p.T1030T|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003efy.1_Silent_p.T102T	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	1124	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		AGTAAGTAGTCGTGTACACAT	0.547		NA											12	54					1.36e-13	1.74e-13	1	0
KALRN	8997	broad.mit.edu	37	3	124048750	124048750	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:124048750G>A	uc003ehg.2	+	8	1448	c.1321G>A	c.(1321-1323)GGT>AGT	p.G441S	KALRN_uc010hrv.1_Missense_Mutation_p.G441S|KALRN_uc003ehf.1_Missense_Mutation_p.G441S|KALRN_uc011bjy.1_Missense_Mutation_p.G441S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	441					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GTGCAGTGAAGGTGGTCTGCC	0.577		NA											34	32					0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126739087	126739087	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:126739087A>T	uc003ejg.2	+	20	3873	c.3869A>T	c.(3868-3870)GAC>GTC	p.D1290V		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1313	Potential.|Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CTGACCAATGACCTGGACGGT	0.627		NA											20	37					0	0	0	0
GATA2	2624	broad.mit.edu	37	3	128202703	128202703	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:128202703C>T	uc003ekm.3	-	5	1452	c.1017G>A	c.(1015-1017)CTG>CTA	p.L339L	GATA2_uc003ekn.3_Silent_p.L339L|GATA2_uc003eko.2_Silent_p.L339L	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	339					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		CCGCTCCTACCAGTCTTCGCT	0.602		NA	Mis		AML(CML blast transformation)								3	49					0	0	0	0
PIK3R4	30849	broad.mit.edu	37	3	130405134	130405134	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:130405134C>T	uc003enj.2	-	15	3977	c.3396G>A	c.(3394-3396)GCG>GCA	p.A1132A		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	1132	WD 3.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						TTAAAGTCCACGCATTGCTTG	0.473		NA											26	45					0	0	0	0
PRR23B	389151	broad.mit.edu	37	3	138738793	138738793	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:138738793C>A	uc003esy.1	-	1	976	c.711G>T	c.(709-711)CCG>CCT	p.P237P		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	237	Pro-rich.									breast(1)	1						TCCCCACGCACGGAGAGGGAG	0.662		NA											14	18					7.93e-07	9.07e-07	1	0
ZIC1	7545	broad.mit.edu	37	3	147128846	147128846	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:147128846C>G	uc003ewe.2	+	1	1666	c.947C>G	c.(946-948)TCC>TGC	p.S316C		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	316	C2H2-type 3.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TTCGCGCGCTCCGAGAATTTA	0.552		NA											30	31					0	0	0	0
AGTR1	185	broad.mit.edu	37	3	148459210	148459210	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:148459210A>T	uc003ewg.2	+	4	834	c.388A>T	c.(388-390)ATT>TTT	p.I130F	AGTR1_uc003ewh.2_Missense_Mutation_p.I130F|AGTR1_uc003ewi.2_Missense_Mutation_p.I130F|AGTR1_uc003ewj.2_Missense_Mutation_p.I130F|AGTR1_uc003ewk.2_Missense_Mutation_p.I130F	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	130	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	ATACCTGGCTATTGTTCACCC	0.498		NA											64	225					0	0	0	0
MME	4311	broad.mit.edu	37	3	154860118	154860118	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:154860118A>T	uc010hvr.1	+	12	1398	c.1187A>T	c.(1186-1188)AAG>ATG	p.K396M	MME_uc003fab.1_Missense_Mutation_p.K396M|MME_uc003fac.1_Missense_Mutation_p.K396M|MME_uc003fad.1_Missense_Mutation_p.K396M|MME_uc003fae.1_Missense_Mutation_p.K396M	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	396	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	GCTTTCCGCAAGGTGAAGAAA	0.388		NA											10	107					0	0	0	0
PLCH1	23007	broad.mit.edu	37	3	155200709	155200709	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:155200709C>A	uc011bok.1	-	23	3407	c.3130G>T	c.(3130-3132)GTA>TTA	p.V1044L	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.V1006L	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1044					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCAGTAGATACAATGGTGTCC	0.453		NA											38	160					7.53e-24	1.03e-23	1	0
C3orf33	285315	broad.mit.edu	37	3	155493562	155493562	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:155493562G>A	uc003fal.1	-	4	391	c.121C>T	c.(121-123)CGC>TGC	p.R41C	C3orf33_uc003fam.1_Missense_Mutation_p.R84C	NM_173657	NP_775928	Q96NB5	Q96NB5_HUMAN	hypothetical protein LOC285315	41							hydrolase activity, acting on ester bonds|nucleic acid binding				0			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GTTATTCGGCGTAATCGTCCA	0.303		NA											37	110					0	0	0	0
TNIK	23043	broad.mit.edu	37	3	170819288	170819288	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:170819288C>T	uc003fhh.2	-	22	2886	c.2541G>A	c.(2539-2541)GAG>GAA	p.E847E	TNIK_uc003fhi.2_Silent_p.E792E|TNIK_uc003fhj.2_Silent_p.E818E|TNIK_uc003fhk.2_Silent_p.E839E|TNIK_uc003fhl.2_Silent_p.E763E|TNIK_uc003fhm.2_Silent_p.E784E|TNIK_uc003fhn.2_Silent_p.E810E|TNIK_uc003fho.2_Silent_p.E755E|TNIK_uc003fhg.2_Silent_p.E25E	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	847	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GGGTCTCGCTCTCTCCATCTT	0.498		NA											145	544					0	0	0	0
GHSR	2693	broad.mit.edu	37	3	172163255	172163255	+	Missense_Mutation	SNP	G	G	C	rs147508651		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:172163255G>C	uc003fib.1	-	2	797	c.797C>G	c.(796-798)GCT>GGT	p.A266G		NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	266	Helical; Name=6; (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CACCACTACAGCTAAAAGGAC	0.428		NA											15	24					0	0	0	0
MFN1	55669	broad.mit.edu	37	3	179103449	179103449	+	Silent	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:179103449A>T	uc003fjs.2	+	15	1881	c.1755A>T	c.(1753-1755)GTA>GTT	p.V585V	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Silent_p.V613V|MFN1_uc010hxc.2_Silent_p.V327V	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	585	Helical; Name=1; (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			TTACATTAGTAACAGGATTGG	0.403		NA											33	120					0	0	0	0
LAMP3	27074	broad.mit.edu	37	3	182841990	182841990	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr3:182841990G>T	uc003flh.3	-	6	1354	c.1130C>A	c.(1129-1131)TCG>TAG	p.S377*		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	377	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			GTAGTCAGACGAGCACTCATC	0.383		NA											16	129					2.49e-13	3.14e-13	1	0
GAK	2580	broad.mit.edu	37	4	845576	845576	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:845576C>A	uc003gbm.3	-	25	3669	c.3470G>T	c.(3469-3471)GGG>GTG	p.G1157V	GAK_uc003gbn.3_Missense_Mutation_p.G1078V|GAK_uc003gbk.3_5'UTR|GAK_uc010ibi.2_Missense_Mutation_p.G382V|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.G1010V	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1157					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		CTCCCGCGCCCCGATCACACT	0.647		NA											28	23					8.58e-18	1.14e-17	1	0
TEC	7006	broad.mit.edu	37	4	48152891	48152891	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:48152891G>C	uc003gxz.2	-	10	952	c.861C>G	c.(859-861)ACC>ACG	p.T287T		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	287	SH2.				intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						CTCCAAACTTGGTATAAAGGG	0.313		NA											27	126					0	0	0	0
FRYL	285527	broad.mit.edu	37	4	48512142	48512142	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:48512142C>G	uc003gyh.1	-	59	8933	c.8328G>C	c.(8326-8328)AAG>AAC	p.K2776N	FRYL_uc003gyf.1_Missense_Mutation_p.K172N|FRYL_uc003gyg.1_Missense_Mutation_p.K1472N	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2776					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						AAACACCAAACTTGAGTGTTT	0.408		NA											19	62					0	0	0	0
LRRC66	339977	broad.mit.edu	37	4	52861265	52861265	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:52861265G>A	uc003gzi.2	-	4	1936	c.1923C>T	c.(1921-1923)TCC>TCT	p.S641S		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	641						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CCCTTGCCCCGGACAGCCTTG	0.527		NA											3	44					0	0	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519769	69519769	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:69519769G>T	uc011cal.1	-	5	1337	c.1299C>A	c.(1297-1299)GTC>GTA	p.V433V		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	433					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GGTCATTAATGACTGACTTCA	0.383		NA											5	107					2.01e-06	2.28e-06	1	0
UGT2B11	10720	broad.mit.edu	37	4	70080094	70080094	+	Missense_Mutation	SNP	A	A	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:70080094A>C	uc003heh.2	-	1	356	c.347T>G	c.(346-348)CTG>CGG	p.L116R	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	116					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TAATTCCCACAGGATTTCTTG	0.294		NA											17	52					0	0	0	0
SMR3A	26952	broad.mit.edu	37	4	71232543	71232543	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:71232543C>A	uc003hfg.1	+	3	318	c.237C>A	c.(235-237)TCC>TCA	p.S79S	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	79	Pro-rich.|Poly-Pro.					extracellular region					0		all_hematologic(202;0.196)				TCCCACCATCCCCTCCTCCAC	0.552		NA											42	68					8.68e-10	1.05e-09	1	0
COL25A1	84570	broad.mit.edu	37	4	109738585	109738585	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:109738585C>T	uc003hze.1	-	36	2461	c.1930G>A	c.(1930-1932)GAT>AAT	p.D644N	COL25A1_uc003hzd.2_RNA	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	644	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GGTAAGCCATCTGGCCCCTGT	0.388		NA											18	35					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114274404	114274404	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:114274404G>C	uc003ibe.3	+	38	4730	c.4630G>C	c.(4630-4632)GAG>CAG	p.E1544Q	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.E1559Q	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1511					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TGCTGAGGAAGAGCCAGGAGA	0.433		NA											13	47					0	0	0	0
CCNA2	890	broad.mit.edu	37	4	122744744	122744744	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:122744744C>T	uc003iec.3	-	1	345	c.40G>A	c.(40-42)GCG>ACG	p.A14T		NM_001237	NP_001228	P20248	CCNA2_HUMAN	cyclin A	14					cell division|mitosis|mitotic cell cycle G2/M transition DNA damage checkpoint|Ras protein signal transduction|regulation of cyclin-dependent protein kinase activity	cytoplasm|nucleoplasm	protein kinase binding			ovary(1)	1						GCCGAGCCCGCCTCGCGGGTC	0.687		NA											3	4					0	0	0	0
INPP4B	8821	broad.mit.edu	37	4	143045799	143045799	+	Missense_Mutation	SNP	T	T	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:143045799T>G	uc003iix.3	-	20	2430	c.1835A>C	c.(1834-1836)TAC>TCC	p.Y612S	INPP4B_uc003iiw.3_Missense_Mutation_p.Y612S|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Missense_Mutation_p.Y427S|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Missense_Mutation_p.Y483S	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	612					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					GGGCAAGCTGTACGCAAGTTC	0.502		NA											15	34					0	0	0	0
POU4F2	5458	broad.mit.edu	37	4	147561662	147561662	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:147561662A>G	uc003ikv.2	+	2	1180	c.932A>G	c.(931-933)AAT>AGT	p.N311S		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	311	POU-specific.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					TCCCACAATAATATGATCGCG	0.607		NA											6	21					0	0	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504404	151504404	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:151504404G>A	uc003ilw.2	+	1	1328	c.223G>A	c.(223-225)GAG>AAG	p.E75K	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	75					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		CACCGAATTTGAGGTGGTGCT	0.607		NA											9	19					0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155253699	155253699	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:155253699C>A	uc003inw.2	-	9	2164	c.2164G>T	c.(2164-2166)GGA>TGA	p.G722*	DCHS2_uc003inx.2_Nonsense_Mutation_p.G1221*	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	722	Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CCATTCTTTCCAGAGTCCATG	0.398		NA											11	57					1.09e-07	1.27e-07	1	0
GUCY1B3	2983	broad.mit.edu	37	4	156717623	156717623	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:156717623T>A	uc003ipc.2	+	8	1105	c.938T>A	c.(937-939)TTA>TAA	p.L313*	GUCY1B3_uc011cio.1_Nonsense_Mutation_p.L335*|GUCY1B3_uc011cip.1_Nonsense_Mutation_p.L293*|GUCY1B3_uc003ipd.2_Nonsense_Mutation_p.L241*|GUCY1B3_uc010iqf.2_Nonsense_Mutation_p.L313*|GUCY1B3_uc010iqg.2_Nonsense_Mutation_p.L241*|GUCY1B3_uc011ciq.1_Nonsense_Mutation_p.L241*	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	313					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		ATGATCTACTTACCTGAAGCA	0.373		NA											11	25					0	0	0	0
DDX60	55601	broad.mit.edu	37	4	169138107	169138107	+	Missense_Mutation	SNP	A	A	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:169138107A>C	uc003irp.2	-	38	5408	c.5116T>G	c.(5116-5118)TGG>GGG	p.W1706G	DDX60_uc003iro.2_3'UTR	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1706							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AACTTTTCCCAAAAAGTTGTA	0.338		NA											16	34					0	0	0	0
DDX60L	91351	broad.mit.edu	37	4	169369891	169369891	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:169369891C>A	uc003irq.3	-	9	1257	c.1036G>T	c.(1036-1038)GTT>TTT	p.V346F	DDX60L_uc003irr.1_Missense_Mutation_p.V346F|DDX60L_uc003irs.1_Missense_Mutation_p.V73F	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	346							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CATCCAAAAACGTTTAAGTTG	0.303		NA											9	24					1.59e-06	1.8e-06	1	0
FAT1	2195	broad.mit.edu	37	4	187534263	187534263	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:187534263C>T	uc003izf.2	-	13	9651	c.9463G>A	c.(9463-9465)GGA>AGA	p.G3155R		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3155	Extracellular (Potential).|Cadherin 29.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGGGAGATACCTGCGTCGGCA	0.567		NA								HNSCC(5;0.00058)			4	11					0	0	0	0
TRIML1	339976	broad.mit.edu	37	4	189060960	189060960	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:189060960C>A	uc003izm.1	+	1	363	c.248C>A	c.(247-249)TCC>TAC	p.S83Y		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	83					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CAGCTCCGGTCCCAGGTGCTG	0.637		NA											7	26					0.000157383	0.000169877	1	0
ADAMTS16	170690	broad.mit.edu	37	5	5146383	5146383	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:5146383C>A	uc003jdl.2	+	3	454	c.316C>A	c.(316-318)CAC>AAC	p.H106N	ADAMTS16_uc003jdk.1_Missense_Mutation_p.H106N|ADAMTS16_uc003jdj.1_Missense_Mutation_p.H106N	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	106					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AGGCTCCAGGCACGACTTCCA	0.542		NA											54	28					4.74e-44	6.71e-44	1	0
ADCY2	108	broad.mit.edu	37	5	7698397	7698397	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:7698397G>A	uc003jdz.1	+	7	1086	c.1019G>A	c.(1018-1020)TGC>TAC	p.C340Y	ADCY2_uc011cmo.1_Missense_Mutation_p.C160Y	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	340	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TTAGGAGACTGCTACTACTGT	0.393		NA											39	162					0	0	0	0
CTNND2	1501	broad.mit.edu	37	5	11411728	11411728	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:11411728C>G	uc003jfa.1	-	5	504	c.359G>C	c.(358-360)GGT>GCT	p.G120A	CTNND2_uc010itt.2_Missense_Mutation_p.G29A|CTNND2_uc011cmy.1_Missense_Mutation_p.G29A|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	120					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CAGCTCGAGACCTGTTGTAAG	0.368		NA											51	29					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13900483	13900483	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:13900483C>T	uc003jfd.2	-	15	2133	c.2091G>A	c.(2089-2091)TTG>TTA	p.L697L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	697	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAGCCTTCACCAATAATGAAG	0.408		NA							Kartagener_syndrome				7	60					0	0	0	0
RASA1	5921	broad.mit.edu	37	5	86675667	86675667	+	Missense_Mutation	SNP	C	C	T	rs138785106	by1000genomes	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:86675667C>T	uc003kiw.2	+	19	2721	c.2603C>T	c.(2602-2604)CCG>CTG	p.P868L	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Missense_Mutation_p.P691L|RASA1_uc011ctv.1_Missense_Mutation_p.P701L|RASA1_uc011ctw.1_Missense_Mutation_p.P702L|RASA1_uc010jaw.2_Missense_Mutation_p.P690L	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	868	Ras-GAP.				cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		ATACTTCCACCGTAAGTGGTG	0.303		NA											9	13					0	0	0	0
PAM	5066	broad.mit.edu	37	5	102343267	102343267	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:102343267G>T	uc003knw.2	+	19	2494	c.2121G>T	c.(2119-2121)CGG>CGT	p.R707R	PAM_uc003kns.2_Silent_p.R600R|PAM_uc003knt.2_Silent_p.R707R|PAM_uc003knu.2_Silent_p.R707R|PAM_uc003knv.2_Silent_p.R707R|PAM_uc011cuz.1_Silent_p.R610R|PAM_uc003knz.2_5'UTR	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	707	Peptidyl-alpha-hydroxyglycine alpha- amidating lyase (By similarity).|NHL 4.|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	AAAATGGTCGGATCCAGTGTT	0.433		NA											21	56					4.35e-09	5.19e-09	1	0
WDR36	134430	broad.mit.edu	37	5	110448824	110448824	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:110448824A>G	uc003kpd.2	+	16	2053	c.1936A>G	c.(1936-1938)ATT>GTT	p.I646V	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	646	WD 8.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		GGATTGCTCTATTAGGACTTG	0.289		NA											19	45					0	0	0	0
DMXL1	1657	broad.mit.edu	37	5	118485227	118485227	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:118485227G>C	uc003ksd.2	+	18	3886	c.3705G>C	c.(3703-3705)ATG>ATC	p.M1235I	DMXL1_uc010jcl.1_Missense_Mutation_p.M1235I	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1235	WD 10.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		ACTGTGAAATGCATGTGTATT	0.433		NA											21	55					0	0	0	0
ZNF608	57507	broad.mit.edu	37	5	123982854	123982855	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:123982854_123982855CC>AA	uc003ktq.1	-	4	3345_3346	c.3222_3223GG>TT	c.(3220-3225)CTGGCT>CTTTCT	p.A1075S	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Missense_Mutation_p.A1075S|ZNF608_uc003ktt.1_Missense_Mutation_p.A1075S|ZNF608_uc003ktp.1_5'Flank	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1075						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		AGTGACTGAGCCAGGGCAGGAT	0.48		NA											10	31					0	0	0	0
MATR3	9782	broad.mit.edu	37	5	138654693	138654693	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:138654693C>T	uc003ldu.2	+	11	1832	c.1405C>T	c.(1405-1407)CAT>TAT	p.H469Y	MATR3_uc010jfb.2_Missense_Mutation_p.H469Y|MATR3_uc003ldt.2_Missense_Mutation_p.H131Y|MATR3_uc003ldw.2_Missense_Mutation_p.H469Y|MATR3_uc003ldx.2_Missense_Mutation_p.H469Y|MATR3_uc010jfc.2_Missense_Mutation_p.H469Y|MATR3_uc003ldy.2_Missense_Mutation_p.H146Y|MATR3_uc011czb.1_Missense_Mutation_p.H181Y|MATR3_uc003ldz.2_Missense_Mutation_p.H469Y|MATR3_uc003lea.2_Missense_Mutation_p.H469Y|MATR3_uc003leb.2_Missense_Mutation_p.H131Y|MATR3_uc003lec.2_Missense_Mutation_p.H146Y	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	469	RRM 1.					nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AGTGAGAGTTCATTTATCCCA	0.348		NA											9	23					0	0	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712201	140712201	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:140712201C>A	uc003lji.1	+	1	1950	c.1950C>A	c.(1948-1950)GGC>GGA	p.G650G	PCDHGA1_uc011dan.1_Silent_p.G650G	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	650	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGACCACGGCCAGCCCCCGC	0.706		NA											16	27					2e-07	2.32e-07	1	0
PCDHGB3	56102	broad.mit.edu	37	5	140751806	140751806	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:140751806G>T	uc003ljw.1	+	1	1845	c.1845G>T	c.(1843-1845)GGG>GGT	p.G615G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.G615G|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	615	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGAGCCCGGGCTGTTCAGCC	0.687		NA											22	48					5.26e-13	6.65e-13	1	0
PCDHGA6	56109	broad.mit.edu	37	5	140755543	140755543	+	Silent	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:140755543C>G	uc003ljy.1	+	1	1893	c.1893C>G	c.(1891-1893)GCC>GCG	p.A631A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.A631A	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	631	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCGCGCGCCCTGCTGGACA	0.701		NA											17	34					0	0	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764014	140764014	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:140764014G>C	uc003lka.1	+	1	1548	c.1548G>C	c.(1546-1548)GCG>GCC	p.A516A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.A516A	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	516	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTGTACGCGCTGCAATCCT	0.517		NA											9	21					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768373	140768373	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:140768373G>C	uc003lkc.1	+	1	922	c.922G>C	c.(922-924)GAA>CAA	p.E308Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.E308Q	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	308	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTAGATTTTGAAGAAGTCAA	0.398		NA											7	20					0	0	0	0
POU4F3	5459	broad.mit.edu	37	5	145719943	145719943	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:145719943T>C	uc003loa.2	+	2	1042	c.953T>C	c.(952-954)GTG>GCG	p.V318A		NM_002700	NP_002691	Q15319	PO4F3_HUMAN	POU class 4 homeobox 3	318	Homeobox.				sensory perception of sound|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAGAACGTGGTGAGAGTCTGG	0.547		NA											9	27					0	0	0	0
GABRG2	2566	broad.mit.edu	37	5	161576255	161576255	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:161576255C>A	uc003lyz.3	+	8	1422	c.1064C>A	c.(1063-1065)ACC>AAC	p.T355N	GABRG2_uc010jjc.2_Missense_Mutation_p.T395N|GABRG2_uc003lyy.3_Missense_Mutation_p.T355N|GABRG2_uc011dej.1_Missense_Mutation_p.T260N	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	355	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GAGTATGGCACCTTGCATTAT	0.423		NA											12	43					1.5e-05	1.66e-05	1	0
WWC1	23286	broad.mit.edu	37	5	167891755	167891755	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:167891755C>T	uc003lzu.2	+	21	3031	c.2938C>T	c.(2938-2940)CGC>TGC	p.R980C	WWC1_uc003lzv.2_Missense_Mutation_p.R986C|WWC1_uc011den.1_Missense_Mutation_p.R986C|WWC1_uc003lzw.2_Missense_Mutation_p.R779C|WWC1_uc010jjf.1_Missense_Mutation_p.R252C	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	980	Interaction with PRKCZ.|Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		CAAGTCGCTGCGCTCCGAGCG	0.597		NA											7	24					0	0	0	0
SLIT3	6586	broad.mit.edu	37	5	168671713	168671713	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:168671713G>T	uc003mab.2	-	3	757	c.337C>A	c.(337-339)CGA>AGA	p.R113R	SLIT3_uc010jjg.2_Silent_p.R113R|SLIT3_uc010jji.2_Silent_p.R113R	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	113	LRR 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACTTACAGTCGCTCTAGCTGC	0.393		NA											10	22					9.7e-10	1.17e-09	1	0
NPM1	4869	broad.mit.edu	37	5	170818333	170818333	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:170818333G>A	uc011dex.1	+	4	298	c.163G>A	c.(163-165)GAT>AAT	p.D55N	NPM1_uc003mbh.2_Missense_Mutation_p.D55N|NPM1_uc003mbi.2_Missense_Mutation_p.D55N|NPM1_uc003mbj.2_Missense_Mutation_p.D55N	NM_002520	NP_002511	P06748	NPM_HUMAN	nucleophosmin 1 isoform 1	55	Necessary for interaction with APEX1.|Required for interaction with SENP3.				anti-apoptosis|cell aging|CenH3-containing nucleosome assembly at centromere|centrosome cycle|DNA repair|interspecies interaction between organisms|intracellular protein transport|negative regulation of cell proliferation|negative regulation of centrosome duplication|nucleocytoplasmic transport|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|regulation of endodeoxyribonuclease activity|regulation of endoribonuclease activity|ribosome assembly|signal transduction	nucleolus|nucleoplasm|ribonucleoprotein complex|spindle pole centrosome	histone binding|NF-kappaB binding|protein binding|protein heterodimerization activity|protein homodimerization activity|ribosomal large subunit binding|ribosomal small subunit binding|RNA binding|Tat protein binding|transcription coactivator activity|unfolded protein binding		NPM1/ALK(632)	haematopoietic_and_lymphoid_tissue(3109)|skin(1)	3110	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGGTGCAAAGGATGAGTTGCA	0.398		NA	T|F 	ALK|RARA|MLF1	NHL|APL|AML								21	29					0	0	0	0
UIMC1	51720	broad.mit.edu	37	5	176396024	176396024	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:176396024G>A	uc011dfp.1	-	6	899	c.732C>T	c.(730-732)CTC>CTT	p.L244L	UIMC1_uc003mfc.1_Silent_p.L121L|UIMC1_uc003mfd.1_Intron|UIMC1_uc003mfg.1_Intron|UIMC1_uc003mff.1_Intron	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	244					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGACAGCTTTGAGAAAAGCAG	0.517		NA											14	68					0	0	0	0
FLT4	2324	broad.mit.edu	37	5	180053207	180053207	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:180053207C>T	uc003mma.3	-	9	1241	c.1162G>A	c.(1162-1164)GAG>AAG	p.E388K	FLT4_uc003mlz.3_Missense_Mutation_p.E388K|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Missense_Mutation_p.E388K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	388	Ig-like C2-type 4.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCTGTCACCTCCTTGAGCACC	0.627		NA							Congenital_Hereditary_Lymphedema				14	46					0	0	0	0
SLC17A3	10786	broad.mit.edu	37	6	25851036	25851036	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:25851036C>T	uc003nfi.3	-	6	658	c.548G>A	c.(547-549)TGG>TAG	p.W183*	SLC17A3_uc003nfk.3_Nonsense_Mutation_p.W261*|SLC17A3_uc011djz.1_Nonsense_Mutation_p.W261*|SLC17A3_uc011dka.1_Nonsense_Mutation_p.W183*	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	183					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						GGTGCTTATCCATGGATAGGA	0.413		NA											13	37					0	0	0	0
HIST1H1T	3010	broad.mit.edu	37	6	26108148	26108148	+	Silent	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:26108148T>A	uc003ngj.2	-	1	217	c.174A>T	c.(172-174)CGA>CGT	p.R58R		NM_005323	NP_005314	P22492	H1T_HUMAN	histone cluster 1, H1t	58	H15.				cell differentiation|multicellular organismal development|nucleosome assembly|spermatogenesis	nucleosome	DNA binding			ovary(2)	2						ACATACCTACTCGTTCCTGTG	0.532		NA											24	56					0	0	0	0
HIST1H2AG	8969	broad.mit.edu	37	6	27101036	27101036	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:27101036G>A	uc003niw.2	+	1	220	c.186G>A	c.(184-186)GAG>GAA	p.E62E	HIST1H2BJ_uc003niu.1_5'Flank|HIST1H2BJ_uc003niv.2_5'Flank	NM_021064	NP_066408	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ag	62					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding				0						TGACCGCCGAGATCCTGGAAC	0.667		NA											24	44					0	0	0	0
COL11A2	1302	broad.mit.edu	37	6	33145004	33145004	+	Splice_Site	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:33145004T>A	uc003ocx.1	-	24	2200	c.1972_splice	c.e24-1	p.G658_splice	COL11A2_uc010jul.1_Splice_Site_p.R37_splice|COL11A2_uc003ocy.1_Splice_Site_p.G572_splice|COL11A2_uc003ocz.1_Splice_Site_p.G551_splice	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1						cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GGGAAGACCCTACATACAGGG	0.547		NA											26	38					0	0	0	0
DAAM2	23500	broad.mit.edu	37	6	39843198	39843198	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:39843198G>T	uc003oow.2	+	11	1411	c.1255G>T	c.(1255-1257)GAC>TAC	p.D419Y	DAAM2_uc010jxc.2_Missense_Mutation_p.D419Y|DAAM2_uc003oox.2_Missense_Mutation_p.D419Y	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	419					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					TGTGGACCCTGACCTGGCTCC	0.572		NA											24	40					5.35e-11	6.58e-11	1	0
C6orf142	90523	broad.mit.edu	37	6	54025221	54025221	+	Silent	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:54025221A>T	uc003pcg.3	+	5	854	c.741A>T	c.(739-741)CCA>CCT	p.P247P	C6orf142_uc003pcf.2_Silent_p.P771P|C6orf142_uc003pch.3_Intron|C6orf142_uc011dxa.1_Silent_p.P782P	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	247						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CATTAGAACCACCAGTGGAGG	0.398		NA											6	22					0	0	0	0
GFRAL	389400	broad.mit.edu	37	6	55223861	55223861	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:55223861T>A	uc003pcm.1	+	6	963	c.877T>A	c.(877-879)TGT>AGT	p.C293S		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	293	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCAATGTACCTGTAGGACCAT	0.393		NA											31	63					0	0	0	0
COL21A1	81578	broad.mit.edu	37	6	55939064	55939064	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:55939064C>A	uc003pcs.2	-	20	2163	c.1931G>T	c.(1930-1932)GGC>GTC	p.G644V	COL21A1_uc010jzz.2_Missense_Mutation_p.G29V|COL21A1_uc011dxg.1_Missense_Mutation_p.G29V|COL21A1_uc011dxh.1_Missense_Mutation_p.G29V|COL21A1_uc003pcr.2_Missense_Mutation_p.A2S	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	644	Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCCTGGTGAGCCATTGCTTCC	0.328		NA											37	60					5.72e-15	7.36e-15	1	0
DST	667	broad.mit.edu	37	6	56357099	56357099	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:56357099G>A	uc003pdf.2	-	79	14354	c.14326C>T	c.(14326-14328)CGA>TGA	p.R4776*	DST_uc003pcz.3_Nonsense_Mutation_p.R4598*|DST_uc011dxj.1_Nonsense_Mutation_p.R4627*|DST_uc011dxk.1_Nonsense_Mutation_p.R4638*|DST_uc003pcy.3_Nonsense_Mutation_p.R4272*|DST_uc003pda.3_5'UTR	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	6684	Spectrin 17.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TTTTCCCATCGACTTTGTACA	0.383		NA											18	72					0	0	0	0
BAI3	577	broad.mit.edu	37	6	69703783	69703783	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:69703783G>T	uc003pev.3	+	11	2306	c.1858G>T	c.(1858-1860)GTG>TTG	p.V620L	BAI3_uc010kak.2_Missense_Mutation_p.V620L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	620	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTGATGTCTGTGGAGATCCT	0.463		NA											53	70					1.86e-20	2.52e-20	1	0
COL12A1	1303	broad.mit.edu	37	6	75806969	75806969	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:75806969C>T	uc003phs.2	-	59	8743	c.8577G>A	c.(8575-8577)CCG>CCA	p.P2859P	COL12A1_uc003pht.2_Silent_p.P1695P	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2859	Triple-helical region (COL2) with 1 imperfection.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TAGTTCTTACCGGCGGCCCTG	0.483		NA											17	46					0	0	0	0
RARS2	57038	broad.mit.edu	37	6	88229969	88229969	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:88229969A>T	uc003pme.2	-	13	1101	c.1041T>A	c.(1039-1041)GAT>GAA	p.D347E	RARS2_uc003pmb.2_Missense_Mutation_p.D172E|RARS2_uc003pmc.2_Missense_Mutation_p.D172E|RARS2_uc003pmd.2_5'UTR|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	347					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		TTTGTCCTTTATCTGTCTTGG	0.313		NA											48	86					0	0	0	0
SFRS18	25957	broad.mit.edu	37	6	99850546	99850546	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:99850546C>T	uc003ppo.3	-	11	1425	c.1197G>A	c.(1195-1197)GAG>GAA	p.E399E	SFRS18_uc003ppl.2_5'Flank|SFRS18_uc003ppp.3_Silent_p.E399E|SFRS18_uc011eag.1_Silent_p.E399E	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	399						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		TGTCACTCCTCTCATCTTCAC	0.398		NA											59	130					0	0	0	0
SLC22A16	85413	broad.mit.edu	37	6	110746270	110746270	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:110746270C>T	uc003puf.2	-	8	1607	c.1540G>A	c.(1540-1542)GCC>ACC	p.A514T	SLC22A16_uc003pue.2_Missense_Mutation_p.A495T	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	514	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		CTCAGGAGGGCCATAGTCCCA	0.423		NA											30	49					0	0	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671163	112671163	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:112671163C>A	uc003pvx.1	+	3	565	c.253C>A	c.(253-255)CAC>AAC	p.H85N		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	85	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		GCAAAGTCTGCACGTGAGGGA	0.537		NA											13	19					2.32e-05	2.56e-05	1	0
HS3ST5	222537	broad.mit.edu	37	6	114378425	114378425	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:114378425G>C	uc003pwg.3	-	2	1069	c.1037C>G	c.(1036-1038)CCC>CGC	p.P346R	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.P346R	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	346	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		ATTATTTTAGGGCCAGTTCAA	0.398		NA											17	44					0	0	0	0
C6orf204	387119	broad.mit.edu	37	6	118887220	118887220	+	Silent	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:118887220G>C	uc003pxz.1	-	3	1080	c.492C>G	c.(490-492)GCC>GCG	p.A164A	C6orf204_uc003pya.1_Silent_p.A167A|C6orf204_uc003pyb.2_Silent_p.A164A|C6orf204_uc011ebj.1_Silent_p.A62A|C6orf204_uc003pyc.2_Silent_p.A167A|C6orf204_uc011ebl.1_Silent_p.A62A	NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	164						centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		AGTTATCCGGGGCAGTGAGTT	0.498		NA											29	50					0	0	0	0
TRDN	10345	broad.mit.edu	37	6	123759228	123759228	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:123759228G>C	uc003pzj.1	-	12	1053	c.1031C>G	c.(1030-1032)GCC>GGC	p.A344G	TRDN_uc003pzk.1_Missense_Mutation_p.A345G|TRDN_uc003pzl.1_Missense_Mutation_p.A345G|uc003pzm.1_5'Flank	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	344	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		CACATCAATGGCAGTTTCCTT	0.348		NA											4	11					0	0	0	0
TCF21	6943	broad.mit.edu	37	6	134210906	134210906	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:134210906C>T	uc003qei.3	+	1	647	c.371C>T	c.(370-372)GCG>GTG	p.A124V	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Missense_Mutation_p.A124V	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	124	Helix-loop-helix motif.				branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		CTCAGGCTGGCGTCCAGCTAC	0.617		NA											17	63					0	0	0	0
AHI1	54806	broad.mit.edu	37	6	135679271	135679271	+	Missense_Mutation	SNP	G	G	T	rs73559947	by1000genomes	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:135679271G>T	uc003qgi.2	-	24	3548	c.3164C>A	c.(3163-3165)ACG>AAG	p.T1055K	AHI1_uc003qgf.2_RNA|AHI1_uc003qgg.2_Missense_Mutation_p.T505K|AHI1_uc003qgh.2_Missense_Mutation_p.T1055K|AHI1_uc003qgj.2_Missense_Mutation_p.T1055K|AHI1_uc003qgk.3_RNA	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	1055	SH3.					adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		CTGTCTTACCGTTGGTGCTGT	0.358		NA											48	203					8e-19	1.08e-18	1	0
REPS1	85021	broad.mit.edu	37	6	139229952	139229952	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:139229952C>T	uc003qii.2	-	18	2648	c.2069G>A	c.(2068-2070)AGC>AAC	p.S690N	REPS1_uc003qig.3_Missense_Mutation_p.S663N|REPS1_uc011edr.1_Missense_Mutation_p.S689N|REPS1_uc003qij.2_Missense_Mutation_p.S599N|REPS1_uc003qik.2_Missense_Mutation_p.S296N	NM_031922	NP_114128	Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	690	Interaction with RALBP1 (By similarity).					coated pit|plasma membrane	calcium ion binding|SH3 domain binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		TGTGCCTTTGCTCTTTAAGAC	0.363		NA											15	22					0	0	0	0
GRM1	2911	broad.mit.edu	37	6	146625871	146625871	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:146625871C>A	uc010khw.1	+	4	1545	c.1075C>A	c.(1075-1077)CTG>ATG	p.L359M	GRM1_uc010khv.1_Missense_Mutation_p.L359M|GRM1_uc003qll.2_Missense_Mutation_p.L359M|GRM1_uc011edz.1_Missense_Mutation_p.L359M|GRM1_uc011eea.1_Missense_Mutation_p.L359M	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	359	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GAAACTGAGGCTGGACACTAA	0.493		NA											17	33					1.68e-08	1.99e-08	1	0
PLEKHG1	57480	broad.mit.edu	37	6	151153189	151153189	+	Missense_Mutation	SNP	G	G	T	rs113595784		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:151153189G>T	uc003qny.1	+	16	3254	c.2942G>T	c.(2941-2943)CGG>CTG	p.R981L	PLEKHG1_uc011eel.1_Missense_Mutation_p.R1021L|PLEKHG1_uc011eem.1_Missense_Mutation_p.R1040L|PLEKHG1_uc003qnz.2_Missense_Mutation_p.R981L	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	981					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		ATGATGGCTCGGCAGTACAGT	0.507		NA											55	105					4.79e-31	6.72e-31	1	0
SYNE1	23345	broad.mit.edu	37	6	152786476	152786476	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:152786476G>T	uc010kiw.2	-	18	2451	c.1849C>A	c.(1849-1851)CGC>AGC	p.R617S	SYNE1_uc003qot.3_Missense_Mutation_p.R624S|SYNE1_uc003qou.3_Missense_Mutation_p.R617S|SYNE1_uc010kjb.1_Missense_Mutation_p.R600S|SYNE1_uc003qpa.1_Missense_Mutation_p.R617S|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Missense_Mutation_p.R133S|SYNE1_uc003qoz.2_Missense_Mutation_p.R49S|SYNE1_uc003qoy.2_Missense_Mutation_p.R184S	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	617	Cytoplasmic (Potential).|HAT 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGCCATAGCGATCCCAGTTA	0.448		NA								HNSCC(10;0.0054)			29	55					1.08e-15	1.4e-15	1	0
ARID1B	57492	broad.mit.edu	37	6	157488191	157488191	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:157488191G>A	uc003qqn.2	+	9	2836	c.2684G>A	c.(2683-2685)GGC>GAC	p.G895D	ARID1B_uc003qqo.2_Missense_Mutation_p.G908D|ARID1B_uc003qqp.2_Missense_Mutation_p.G895D|ARID1B_uc010kjl.2_Missense_Mutation_p.G93D	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	953					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		AGTTTCCCCGGCATGAACCAG	0.537		NA											4	239					0	0	0	0
T	6862	broad.mit.edu	37	6	166578115	166578115	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:166578115G>A	uc003quu.1	-	6	1201	c.708C>T	c.(706-708)AGC>AGT	p.S236S	T_uc003qut.1_Silent_p.S236S|T_uc003quv.1_Silent_p.S236S	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	236					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		CAGGTTGCTGGCTGTCTCCGG	0.418		NA							Chordoma_Familial_Clustering_of				29	58					0	0	0	0
RPS6KA2	6196	broad.mit.edu	37	6	167271702	167271702	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:167271702C>A	uc003qvd.1	-	2	222	c.109G>T	c.(109-111)GAC>TAC	p.D37Y	RPS6KA2_uc003qvc.1_Missense_Mutation_p.D37Y	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	Error:Variant_position_missing_in_Q15349_after_alignment					axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		TCTGCAGTGTCTTCTGTGGTG	0.443		NA											10	41					3.62e-10	4.41e-10	1	0
THBS2	7058	broad.mit.edu	37	6	169629677	169629677	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr6:169629677G>T	uc003qwt.2	-	15	2497	c.2249C>A	c.(2248-2250)ACC>AAC	p.T750N		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	750	TSP type-3 2.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CTTCTCATCGGTCACACCGTC	0.557		NA											11	100					6.4e-05	7e-05	1	0
AMZ1	155185	broad.mit.edu	37	7	2752343	2752343	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:2752343T>C	uc003smr.1	+	7	1689	c.1328T>C	c.(1327-1329)TTC>TCC	p.F443S	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Missense_Mutation_p.F192S	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	443							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		TGGGAGATGTTCACGGGCCAG	0.687		NA											13	34					0	0	0	0
MIOS	54468	broad.mit.edu	37	7	7636045	7636045	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:7636045G>A	uc003srf.2	+	11	2662	c.2354G>A	c.(2353-2355)TGT>TAT	p.C785Y	MIOS_uc003srg.2_Missense_Mutation_p.C320Y|MIOS_uc010ktq.2_Missense_Mutation_p.C180Y	NM_019005	NP_061878	Q9NXC5	MIO_HUMAN	missing oocyte, meiosis regulator, homolog	785											0						CTTCCTCGATGTGCGCTTTGT	0.403		NA											60	96					0	0	0	0
ITGB8	3696	broad.mit.edu	37	7	20371492	20371492	+	Silent	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:20371492A>T	uc003suu.2	+	1	768	c.63A>T	c.(61-63)CGA>CGT	p.R21R	ITGB8_uc011jyh.1_Intron|ITGB8_uc003sut.2_Silent_p.R21R	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	21					cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						ACGACCGGCGAGGTCCCGCCT	0.433		NA											23	44					0	0	0	0
TRIL	9865	broad.mit.edu	37	7	28995715	28995715	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:28995715C>G	uc003szt.2	-	3	2315	c.1948G>C	c.(1948-1950)GAG>CAG	p.E650Q		NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	650	Extracellular (Potential).				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						CCGCGCAGCTCGCGCAGCGTG	0.711		NA											2	7					0	0	0	0
NOD1	10392	broad.mit.edu	37	7	30472736	30472736	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:30472736A>G	uc003tav.2	-	12	3204	c.2681T>C	c.(2680-2682)GTC>GCC	p.V894A		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	894					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						CGTCTGGTTGACTTTCAACAT	0.323		NA											9	46					0	0	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31142969	31142969	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:31142969G>T	uc003tca.1	+	14	1388	c.1165G>T	c.(1165-1167)GGC>TGC	p.G389C	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.G368C|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.G417C|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.G417C|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.G416C|ADCYAP1R1_uc003tcf.1_Missense_Mutation_p.G147C	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	389	Helical; Name=7; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GCTGGGGCTGGGCTCCTTCCA	0.547		NA											13	67					4.38e-07	5.04e-07	1	0
NEUROD6	63974	broad.mit.edu	37	7	31378227	31378227	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:31378227G>A	uc003tch.2	-	2	1009	c.656C>T	c.(655-657)CCC>CTC	p.P219L		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	219					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						ATGCCCTGGGGGAGTGGTGAG	0.527		NA											26	54					0	0	0	0
ABCA13	154664	broad.mit.edu	37	7	48443311	48443311	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:48443311C>T	uc003toq.2	+	39	11930	c.11905C>T	c.(11905-11907)CAG>TAG	p.Q3969*	ABCA13_uc010kys.1_Nonsense_Mutation_p.Q1043*|ABCA13_uc003tos.1_Nonsense_Mutation_p.Q795*|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3969	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AACTCAGCATCAGCACAAACA	0.478		NA											24	18					0	0	0	0
ZNF735	730291	broad.mit.edu	37	7	63680469	63680469	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:63680469A>G	uc011kdn.1	+	4	1040	c.1040A>G	c.(1039-1041)CAT>CGT	p.H347R		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	347	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGATAATTCATACTGGAGAG	0.408		NA											18	31					0	0	0	0
MLXIPL	51085	broad.mit.edu	37	7	73010505	73010505	+	Missense_Mutation	SNP	A	A	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:73010505A>C	uc003tyn.1	-	13	2084	c.2036T>G	c.(2035-2037)CTC>CGC	p.L679R	MLXIPL_uc003tyj.1_Missense_Mutation_p.L58R|MLXIPL_uc003tyk.1_Missense_Mutation_p.L677R|MLXIPL_uc003tyl.1_Missense_Mutation_p.L677R|MLXIPL_uc003tym.1_Missense_Mutation_p.L679R|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Missense_Mutation_p.L585R	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	679					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTGGGCACTGAGTGTGCTCAC	0.627		NA											12	55					0	0	0	0
CACNA2D1	781	broad.mit.edu	37	7	81579768	81579768	+	Silent	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:81579768G>T	uc003uhr.1	-	39	3472	c.3216C>A	c.(3214-3216)ATC>ATA	p.I1072I	uc003uhq.1_5'Flank|CACNA2D1_uc011kgy.1_Silent_p.I284I	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	1084	Helical; (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	GGATTCCAATGATATACCACA	0.388		NA											33	78					6.04e-23	8.26e-23	1	0
PCLO	27445	broad.mit.edu	37	7	82785474	82785474	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:82785474G>C	uc003uhx.2	-	2	772	c.483C>G	c.(481-483)AAC>AAG	p.N161K	PCLO_uc003uhv.2_Missense_Mutation_p.N161K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	161					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CACTTAAAGCGTTAACCTCTG	0.403		NA											32	73					0	0	0	0
SAMD9	54809	broad.mit.edu	37	7	92732854	92732854	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:92732854C>T	uc003umf.2	-	3	2813	c.2557G>A	c.(2557-2559)GTA>ATA	p.V853I	SAMD9_uc003umg.2_Missense_Mutation_p.V853I	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	853						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGCTGTATTACGGCAATACTG	0.333		NA											24	93					0	0	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95664996	95664996	+	Silent	SNP	G	G	A	rs142103982		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:95664996G>A	uc003uoc.3	+	13	1624	c.1347G>A	c.(1345-1347)ACG>ACA	p.T449T	DYNC1I1_uc003uod.3_Silent_p.T432T|DYNC1I1_uc003uob.2_Silent_p.T412T|DYNC1I1_uc003uoe.3_Silent_p.T429T|DYNC1I1_uc010lfl.2_Silent_p.T438T	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	449	WD 4.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CTTTCCCAACGGGAGACGTCA	0.473		NA											50	138					0	0	0	0
WNT2	7472	broad.mit.edu	37	7	116918348	116918348	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:116918348G>T	uc003viz.2	-	5	1244	c.944C>A	c.(943-945)ACC>AAC	p.T315N	WNT2_uc003vja.2_Missense_Mutation_p.T219N	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	315					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		GACATGGGAGGTGTCGTAGCC	0.602		NA											32	24					2.61e-14	3.36e-14	1	0
GPR37	2861	broad.mit.edu	37	7	124387352	124387352	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:124387352T>A	uc003vli.2	-	2	1720	c.1069A>T	c.(1069-1071)ATA>TTA	p.I357L		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	357	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						AAGCGGTCTATGCACAGAGCA	0.493		NA											13	66					0	0	0	0
GRM8	2918	broad.mit.edu	37	7	126410105	126410105	+	Missense_Mutation	SNP	C	C	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:126410105C>G	uc003vlr.2	-	6	1482	c.1171G>C	c.(1171-1173)GCT>CCT	p.A391P	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.A391P|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.A112P	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	391	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GAATCCCGAGCAATTCGCTCC	0.388		NA								HNSCC(24;0.065)			12	18					0	0	0	0
OR2A12	346525	broad.mit.edu	37	7	143792691	143792691	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:143792691G>T	uc011kty.1	+	1	491	c.491G>T	c.(490-492)AGG>ATG	p.R164M		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					CTTATTCTGAGGCTGCCTTTT	0.458		NA											55	74					1.46e-32	2.06e-32	1	0
CNTNAP2	26047	broad.mit.edu	37	7	146536965	146536965	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:146536965G>T	uc003weu.1	+	3	887	c.371G>T	c.(370-372)TGG>TTG	p.W124L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	124	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGGAGAAACTGGAAACCCTAT	0.443		NA								HNSCC(39;0.1)			19	34					9.96e-16	1.29e-15	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147183129	147183129	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:147183129C>A	uc003weu.1	+	11	2289	c.1773C>A	c.(1771-1773)CAC>CAA	p.H591Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	591	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCACCTGCCACAACTGTGAGT	0.458		NA								HNSCC(39;0.1)			19	38					3.52e-12	4.39e-12	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147869371	147869371	+	Silent	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:147869371C>A	uc003weu.1	+	18	3327	c.2811C>A	c.(2809-2811)ATC>ATA	p.I937I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	937	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGGGCTGCATCCGCTCCTTGA	0.537		NA								HNSCC(39;0.1)			23	49					1.64e-13	2.09e-13	1	0
SSPO	23145	broad.mit.edu	37	7	149474083	149474083	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:149474083G>T	uc010lpk.2	+	3	293	c.293G>T	c.(292-294)TGG>TTG	p.W98L	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	98	EMI.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TGCCCAGGCTGGGGGGGCGCC	0.622		NA											12	54					1.05e-09	1.27e-09	1	0
CRYGN	155051	broad.mit.edu	37	7	151133382	151133382	+	Silent	SNP	G	G	A	rs113942095	by1000genomes	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:151133382G>A	uc003wke.2	-	3	396	c.300C>T	c.(298-300)TTC>TTT	p.F100F	CRYGN_uc003wkf.2_Intron|CRYGN_uc003wkg.2_RNA|CRYGN_uc010lqd.1_RNA	NM_144727	NP_653328	Q8WXF5	CRGN_HUMAN	gammaN-crystallin	100	Beta/gamma crystallin 'Greek key' 3.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00358)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGCAACCCTCGAAGATTTCTA	0.537		NA											11	24					0	0	0	0
FAM160B2	64760	broad.mit.edu	37	8	21960044	21960044	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:21960044C>T	uc011kyx.1	+	16	2049	c.1998C>T	c.(1996-1998)ATC>ATT	p.I666I	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	666											0						TGTAGGTGATCGGGGACTTGA	0.617		NA											2	0					0	0	0	0
TRIM35	23087	broad.mit.edu	37	8	27145527	27145527	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:27145527G>A	uc003xfl.1	-	6	1104	c.1022C>T	c.(1021-1023)TCG>TTG	p.S341L	TRIM35_uc010lup.1_3'UTR	NM_171982	NP_741983	Q9UPQ4	TRI35_HUMAN	tripartite motif-containing 35 isoform 2	341	B30.2/SPRY.				apoptosis|induction of apoptosis|negative regulation of mitotic cell cycle	cytoplasm|nucleus	zinc ion binding				0		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|Epithelial(17;9.34e-10)|Colorectal(74;0.141)		GCAGGGCGCCGAGGAGAAGCG	0.682		NA											8	47					0	0	0	0
CCDC25	55246	broad.mit.edu	37	8	27606107	27606107	+	Missense_Mutation	SNP	T	T	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:27606107T>C	uc003xgc.2	-	6	366	c.253A>G	c.(253-255)ATG>GTG	p.M85V	CCDC25_uc003xgd.2_Missense_Mutation_p.M17V|CCDC25_uc011lan.1_Intron|CCDC25_uc011lao.1_Intron|CCDC25_uc003xge.2_Intron|CCDC25_uc003xgf.1_RNA	NM_018246	NP_060716	Q86WR0	CCD25_HUMAN	coiled-coil domain containing 25	85											0		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0223)|KIRC - Kidney renal clear cell carcinoma(542;0.11)|Kidney(114;0.131)|Colorectal(74;0.154)		ACGTTGTTCATCTTGCAGCCT	0.488		NA											18	111					0	0	0	0
FUT10	84750	broad.mit.edu	37	8	33310959	33310959	+	Missense_Mutation	SNP	T	T	C	rs139365562		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:33310959T>C	uc003xje.2	-	3	507	c.151A>G	c.(151-153)AAA>GAA	p.K51E	FUT10_uc003xjc.2_Missense_Mutation_p.K58E|FUT10_uc003xjd.2_Missense_Mutation_p.K23E|FUT10_uc011lbi.1_Missense_Mutation_p.K101E|FUT10_uc003xjf.2_5'UTR|FUT10_uc003xjg.2_Missense_Mutation_p.K23E|FUT10_uc003xjh.2_Missense_Mutation_p.K51E|FUT10_uc003xji.1_Missense_Mutation_p.K51E	NM_032664	NP_116053	Q6P4F1	FUT10_HUMAN	fucosyltransferase 10	51	Lumenal (Potential).				embryo development|fertilization|hemopoiesis|L-fucose catabolic process|nervous system development|protein folding|protein glycosylation|protein targeting|wound healing	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			ovary(1)|pancreas(1)	2				KIRC - Kidney renal clear cell carcinoma(67;0.129)|Kidney(114;0.154)		TCCTCCATTTTTGTATGTCCA	0.378		NA											13	75					0	0	0	0
CHRNA6	8973	broad.mit.edu	37	8	42620299	42620299	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:42620299G>C	uc003xpj.2	-	2	174	c.128C>G	c.(127-129)TCT>TGT	p.S43C	CHRNA6_uc011lcw.1_Missense_Mutation_p.S43C	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	43	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTTGTAATGAGAAAACAGTTT	0.557		NA											22	106					0	0	0	0
MOS	4342	broad.mit.edu	37	8	57025647	57025647	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:57025647G>C	uc011leb.1	-	1	895	c.895C>G	c.(895-897)CTC>GTC	p.L299V		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	299	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			GCAGCGGAGAGGGACGGGCGC	0.687		NA											13	26					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766927	77766927	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:77766927C>T	uc003yav.2	+	10	8022	c.7635C>T	c.(7633-7635)TGC>TGT	p.C2545C	ZFHX4_uc003yau.1_Silent_p.C2590C|ZFHX4_uc003yaw.1_Silent_p.C2545C	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2545						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATAATAATTGCAGTGAAAAAG	0.473		NA								HNSCC(33;0.089)			10	24					0	0	0	0
LRRCC1	85444	broad.mit.edu	37	8	86047139	86047139	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:86047139A>T	uc003ycw.2	+	13	2180	c.2026A>T	c.(2026-2028)ATT>TTT	p.I676F	LRRCC1_uc010maa.1_Missense_Mutation_p.I377F|LRRCC1_uc003ycx.2_Missense_Mutation_p.I583F|LRRCC1_uc003ycy.2_Missense_Mutation_p.I656F	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	676					cell division|mitosis	centriole|nucleus					0						ACATGCTCTTATTTGGGCTCA	0.313		NA											17	53					0	0	0	0
UBR5	51366	broad.mit.edu	37	8	103373366	103373366	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:103373366G>A	uc003ykr.1	-	3	209	c.176C>T	c.(175-177)GCC>GTC	p.A59V	UBR5_uc003yks.1_Missense_Mutation_p.A59V	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	59					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AAGAAGAAAGGCAGCATGATT	0.333		NA											9	44					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110488740	110488740	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:110488740G>A	uc003yne.2	+	52	8865	c.8761G>A	c.(8761-8763)GAA>AAA	p.E2921K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2921	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTATAGGAAGAAGACTATGT	0.259		NA								HNSCC(38;0.096)			3	4					0	0	0	0
RAD21	5885	broad.mit.edu	37	8	117866561	117866561	+	Missense_Mutation	SNP	T	T	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:117866561T>A	uc003yod.2	-	9	1372	c.1084A>T	c.(1084-1086)ATG>TTG	p.M362L		NM_006265	NP_006256	O60216	RAD21_HUMAN	RAD21 homolog	362	Interaction with WAPAL and PDS5B.|Interaction with STAG1.				apoptosis|cell division|chromosome segregation|double-strand break repair|mitotic metaphase/anaphase transition|mitotic prometaphase|protein localization to chromatin|reciprocal meiotic recombination|regulation of transcription from RNA polymerase II promoter	chromosome, centromeric region|cohesin complex|nuclear chromosome|nucleoplasm	protein binding			lung(1)|skin(1)	2	all_cancers(13;1.21e-21)|Lung NSC(37;0.000134)|Ovarian(258;0.0172)					TCTTTCCACATCATCAATTTC	0.383		NA											19	73					0	0	0	0
ZNF696	79943	broad.mit.edu	37	8	144378762	144378762	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:144378762C>A	uc003yxy.3	+	3	1326	c.917C>A	c.(916-918)TCC>TAC	p.S306Y		NM_030895	NP_112157	Q9H7X3	ZN696_HUMAN	zinc finger protein 696	306	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AGCCGCAGCTCCTTCCTCCGC	0.731		NA											3	10					0.004672	0.0048978	1	0
CDKN2A	1029	broad.mit.edu	37	9	21970900	21970900	+	Splice_Site	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:21970900C>A	uc003zpk.2	-	2	669	c.457_splice	c.e2+1	p.D153_splice	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Splice_Site|CDKN2A_uc010miu.2_Splice_Site|CDKN2A_uc003zpl.2_Splice_Site	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1						cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(12)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TCAGTCCTCACCTGAGGGACC	0.597		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			13	5					3.27e-08	3.85e-08	1	0
LINGO2	158038	broad.mit.edu	37	9	27949285	27949285	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:27949285A>G	uc003zqu.1	-	2	1579	c.1385T>C	c.(1384-1386)GTG>GCG	p.V462A	LINGO2_uc010mjf.1_Missense_Mutation_p.V462A|LINGO2_uc003zqv.1_Missense_Mutation_p.V462A	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	462	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		ATCACCCAACACGGTGGCTCT	0.537		NA											23	17					0	0	0	0
TAF1L	138474	broad.mit.edu	37	9	32634220	32634220	+	Missense_Mutation	SNP	G	G	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:32634220G>T	uc003zrg.1	-	1	1448	c.1358C>A	c.(1357-1359)GCA>GAA	p.A453E	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	453					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AAGCCAGCCTGCCAGGCTTGC	0.468		NA											71	50					1.38e-34	1.95e-34	1	0
ENHO	375704	broad.mit.edu	37	9	34521615	34521615	+	Missense_Mutation	SNP	A	A	G			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:34521615A>G	uc003zun.1	-	2	503	c.79T>C	c.(79-81)TGG>CGG	p.W27R	ENHO_uc003zuo.2_RNA	NM_198573	NP_940975	Q6UWT2	ENHO_HUMAN	adropin precursor	27						extracellular region					0						AGGATGACCCAGAGCAGCAGC	0.632		NA											9	49					0	0	0	0
C9orf152	401546	broad.mit.edu	37	9	112963437	112963437	+	Missense_Mutation	SNP	C	C	T	rs138966973	byFrequency	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:112963437C>T	uc011lwk.1	-	2	1065	c.511G>A	c.(511-513)GGA>AGA	p.G171R		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	171											0						TCTGGGATTCCGGTTCCTTGC	0.493		NA											26	114					0	0	0	0
ZBTB6	10773	broad.mit.edu	37	9	125673995	125673995	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:125673995G>A	uc004bnh.2	-	2	446	c.357C>T	c.(355-357)TGC>TGT	p.C119C		NM_006626	NP_006617	Q15916	ZBTB6_HUMAN	zinc finger and BTB domain containing 6	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGCTTCTGTGCACTTTTCCA	0.388		NA											17	73					0	0	0	0
TOR1B	27348	broad.mit.edu	37	9	132565578	132565578	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:132565578C>T	uc004byk.1	+	1	147	c.87C>T	c.(85-87)ACC>ACT	p.T29T		NM_014506	NP_055321	O14657	TOR1B_HUMAN	torsin family 1, member B (torsin B) precursor	29					chaperone mediated protein folding requiring cofactor|response to unfolded protein	endoplasmic reticulum lumen	ATP binding|nucleoside-triphosphatase activity|unfolded protein binding				0		Ovarian(14;0.0586)				AGCCCATCACCGTGGGCCTAG	0.726		NA											11	1					0	0	0	0
SETX	23064	broad.mit.edu	37	9	135205410	135205410	+	Silent	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:135205410G>A	uc004cbk.2	-	10	1758	c.1575C>T	c.(1573-1575)TCC>TCT	p.S525S	SETX_uc004cbj.2_Silent_p.S144S|SETX_uc010mzt.2_Silent_p.S144S	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	525					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		TAGATGGCATGGAATGCAATG	0.438		NA											102	35					0	0	0	0
RALGDS	5900	broad.mit.edu	37	9	136030665	136030665	+	Missense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr9:136030665C>T	uc011mcw.1	-	6	577	c.296G>A	c.(295-297)GGC>GAC	p.G99D	GBGT1_uc004ccx.2_Missense_Mutation_p.A40T|GBGT1_uc010nab.2_Missense_Mutation_p.G99D|GBGT1_uc011mcx.1_Missense_Mutation_p.A70T|GBGT1_uc004ccw.2_Missense_Mutation_p.A87T|GBGT1_uc010nac.1_5'UTR|GBGT1_uc004ccy.1_Missense_Mutation_p.A87T	NM_001042368	NP_001035827	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	Error:Variant_position_missing_in_Q12967_after_alignment					nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		ACGATGGGCGCCAACCAGGGT	0.557		NA	T	CIITA	PMBL|Hodgkin Lymphona|								19	14					0	0	0	0
CXorf22	170063	broad.mit.edu	37	X	35969932	35969932	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:35969932C>T	uc004ddj.2	+	6	957	c.898C>T	c.(898-900)CAA>TAA	p.Q300*	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	300										large_intestine(1)|lung(1)|ovary(1)	3						TACAGATATTCAACAAAGAAC	0.279		NA											5	8					0	0	0	0
ITIH5L	347365	broad.mit.edu	37	X	54784495	54784495	+	Missense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:54784495G>C	uc004dtj.2	-	8	2042	c.2012C>G	c.(2011-2013)TCC>TGC	p.S671C		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	671					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						AGTAGTTGAGGATAAGTAGAA	0.522		NA											17	64					0	0	0	0
ITIH5L	347365	broad.mit.edu	37	X	54784525	54784525	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:54784525G>C	uc004dtj.2	-	8	2012	c.1982C>G	c.(1981-1983)TCA>TGA	p.S661*		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	661					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						CACAGGCCTTGATTTGGGGGA	0.542		NA											12	47					0	0	0	0
ATRX	546	broad.mit.edu	37	X	76938209	76938209	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:76938209A>T	uc004ecp.3	-	9	2771	c.2539T>A	c.(2539-2541)TTT>ATT	p.F847I	ATRX_uc004ecq.3_Missense_Mutation_p.F809I|ATRX_uc004eco.3_Missense_Mutation_p.F632I|ATRX_uc004ecr.2_Missense_Mutation_p.F779I|ATRX_uc010nlx.1_Missense_Mutation_p.F818I|ATRX_uc010nly.1_Missense_Mutation_p.F792I	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	847					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GAAGAGTCAAAATCTTTTGTA	0.249		NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						101	175					0	0	0	0
PCDH11X	27328	broad.mit.edu	37	X	91131853	91131853	+	Missense_Mutation	SNP	A	A	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:91131853A>T	uc004efk.1	+	2	1459	c.614A>T	c.(613-615)AAG>ATG	p.K205M	PCDH11X_uc004efl.1_Missense_Mutation_p.K205M|PCDH11X_uc004efo.1_Missense_Mutation_p.K205M|PCDH11X_uc010nmv.1_Missense_Mutation_p.K205M|PCDH11X_uc004efm.1_Missense_Mutation_p.K205M|PCDH11X_uc004efn.1_Missense_Mutation_p.K205M|PCDH11X_uc004efh.1_Missense_Mutation_p.K205M|PCDH11X_uc004efj.1_Missense_Mutation_p.K205M	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	205	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ATTGTTCAAAAGGAGTTAGAT	0.398		NA											21	53					0	0	0	0
VSIG1	340547	broad.mit.edu	37	X	107310364	107310364	+	Missense_Mutation	SNP	G	G	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:107310364G>A	uc004eno.2	+	3	573	c.412G>A	c.(412-414)GTG>ATG	p.V138M	VSIG1_uc011msk.1_Missense_Mutation_p.V174M	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	138	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CAGTGTGTTAGGTATGAGCAC	0.438		NA											73	16					0	0	0	0
CAPN6	827	broad.mit.edu	37	X	110495672	110495672	+	Missense_Mutation	SNP	C	C	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:110495672C>A	uc004epc.1	-	5	730	c.562G>T	c.(562-564)GAC>TAC	p.D188Y	CAPN6_uc011msu.1_Intron	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	188	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						CCCGTGAAGTCCACAATAATA	0.433		NA											35	14					6.71e-13	8.43e-13	1	0
SPRY3	10251	broad.mit.edu	37	X	155003585	155003585	+	Silent	SNP	C	C	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:155003585C>T	uc004fnq.1	+	2	506	c.52C>T	c.(52-54)CTG>TTG	p.L18L	SPRY3_uc010nvl.1_Silent_p.L18L	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	18					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TATTGAACAGCTGCGCTCTAC	0.488		NA											74	39					0	0	0	0
AGRN	375790	broad.mit.edu	37	1	957724	957724	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr1:957724delC	uc001ack.1	+	2	395	c.345delC	c.(343-345)TTCfs	p.F115fs		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	115	NtA.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CCAGGATCTTCTTTGTGAACC	0.607		NA											107	52	---	---	---	---	NA	NA	NA	NA
C10orf12	26148	broad.mit.edu	37	10	98741349	98741372	+	In_Frame_Del	DEL	CGCCAGGATTTAGAGGCAAATGAA	CGCCAGGATTTAGAGGCAAATGAA	-	rs141108014		TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr10:98741349_98741372delCGCCAGGATTTAGAGGCAAATGAA	uc001kmv.2	+	1	309_332	c.202_225delCGCCAGGATTTAGAGGCAAATGAA	c.(202-225)CGCCAGGATTTAGAGGCAAATGAAdel	p.RQDLEANE68del	C10orf12_uc009xvg.1_In_Frame_Del_p.RQDLEANE378del	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	68_75										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AACACCTTTGCGCCAGGATTTAGAGGCAAATGAACAAGATGCAA	0.429		NA											10	72	---	---	---	---	NA	NA	NA	NA
VAMP1	6843	broad.mit.edu	37	12	6573649	6573649	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:6573649delT	uc001qok.2	-	5	490	c.344delA	c.(343-345)TACfs	p.Y115fs	TAPBPL_uc001qoi.1_Intron|VAMP1_uc001qoj.2_Intron|VAMP1_uc001qol.2_3'UTR	NM_014231	NP_055046	P23763	VAMP1_HUMAN	vesicle-associated membrane protein 1 isoform 1	115	Helical; Anchor for type IV membrane protein; (Potential).				neurotransmitter secretion|vesicle-mediated transport	cell junction|endocytic vesicle membrane|integral to plasma membrane|mitochondrial outer membrane|synaptic vesicle membrane|synaptosome	protein binding				0					Botulinum Toxin Type B(DB00042)	AGTAAAAAAGTAGACTGGACA	0.473		NA											2	4	---	---	---	---	NA	NA	NA	NA
ACSM4	341392	broad.mit.edu	37	12	7457112	7457112	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:7457112delG	uc001qsx.1	+	1	185	c.185delG	c.(184-186)TGGfs	p.W62fs		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	62					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						CTGGACCAGTGGTCCCAAAAG	0.468		NA											31	71	---	---	---	---	NA	NA	NA	NA
CD163L1	283316	broad.mit.edu	37	12	7559427	7559446	+	Frame_Shift_Del	DEL	CTTAGTTCAAGATCACTACT	CTTAGTTCAAGATCACTACT	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr12:7559427_7559446delCTTAGTTCAAGATCACTACT	uc001qsy.2	-	5	795_814	c.769_788delAGTAGTGATCTTGAACTAAG	c.(769-789)AGTAGTGATCTTGAACTAAGGfs	p.S257fs	CD163L1_uc010sge.1_Frame_Shift_Del_p.S267fs	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	257_263	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ACCTACAAGCCTTAGTTCAAGATCACTACTATCTGAAACA	0.414		NA											18	89	---	---	---	---	NA	NA	NA	NA
RNASE3	6037	broad.mit.edu	37	14	21360216	21360216	+	Frame_Shift_Del	DEL	C	C	-	rs2073342	byFrequency	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:21360216delC	uc001vyj.2	+	2	425	c.371delC	c.(370-372)ACGfs	p.T124fs		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	124					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	TCAAACTGCACGTATGCAGAC	0.468		NA											55	45	---	---	---	---	NA	NA	NA	NA
MYH7	4625	broad.mit.edu	37	14	23887419	23887419	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr14:23887419delT	uc001wjx.2	-	30	4275	c.4169delA	c.(4168-4170)AAGfs	p.K1390fs	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1390	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CAGAACTCACTTGGCCTCCTC	0.617		NA											49	28	---	---	---	---	NA	NA	NA	NA
ZNF750	79755	broad.mit.edu	37	17	80789871	80789872	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr17:80789871_80789872insT	uc002kga.2	-	2	770_771	c.459_460insA	c.(457-462)CTGGAAfs	p.L153fs	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	153_154						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GCTGCGCCTTCCAGAGCAGGCT	0.658		NA											36	15	---	---	---	---	NA	NA	NA	NA
PSG9	5678	broad.mit.edu	37	19	43772264	43772264	+	Frame_Shift_Del	DEL	G	G	-	rs143419745	byFrequency	TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr19:43772264delG	uc002owd.3	-	2	201	c.102delC	c.(100-102)GCCfs	p.A34fs	PSG9_uc002owe.3_Frame_Shift_Del_p.A34fs|PSG9_uc010xwm.1_Frame_Shift_Del_p.A34fs|PSG9_uc002owf.3_Frame_Shift_Del_p.A34fs|PSG9_uc002owg.2_Frame_Shift_Del_p.A34fs|PSG9_uc002owh.2_Frame_Shift_Del_p.A34fs	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	34					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TCGTGACTTCGGCAGTGGTGG	0.488		NA											92	166	---	---	---	---	NA	NA	NA	NA
FAT1	2195	broad.mit.edu	37	4	187542674	187542675	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr4:187542674_187542675insCC	uc003izf.2	-	10	5253_5254	c.5065_5066insGG	c.(5065-5067)GTTfs	p.V1689fs		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1689	Extracellular (Potential).|Cadherin 15.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATGGGCTGTAACCATCCCAACG	0.386		NA								HNSCC(5;0.00058)			28	56	---	---	---	---	NA	NA	NA	NA
SLC27A6	28965	broad.mit.edu	37	5	128351610	128351610	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:128351610delG	uc003kuy.2	+	6	1398	c.1002delG	c.(1000-1002)TTGfs	p.L334fs	SLC27A6_uc003kuz.2_Frame_Shift_Del_p.L334fs	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	334					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGGTGCGTTTGGCAATTGGAA	0.328		NA											19	29	---	---	---	---	NA	NA	NA	NA
ADAMTS19	171019	broad.mit.edu	37	5	129001220	129001221	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:129001220_129001221insA	uc003kvb.1	+	16	2436_2437	c.2436_2437insA	c.(2434-2439)GCTGGAfs	p.A812fs	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	812_813	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGATACCTGCTGGAGCAAGAAG	0.406		NA											7	6	---	---	---	---	NA	NA	NA	NA
RBM27	54439	broad.mit.edu	37	5	145648991	145648992	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr5:145648991_145648992insT	uc003lnz.3	+	17	2701_2702	c.2535_2536insT	c.(2533-2538)ATATCCfs	p.I845fs	RBM27_uc003lny.2_Frame_Shift_Ins_p.I790fs	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	845_846	Potential.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGATGTTAATATCCAAGTTAGA	0.243		NA											8	20	---	---	---	---	NA	NA	NA	NA
MDFIC	29969	broad.mit.edu	37	7	114563068	114563068	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr7:114563068delG	uc003vhf.2	+	2	570	c.307delG	c.(307-309)GCGfs	p.A103fs	MDFIC_uc003vhg.2_RNA	NM_199072	NP_951038	Q9P1T7	MDFIC_HUMAN	MyoD family inhibitor domain containing protein	Error:Variant_position_missing_in_Q9P1T7_after_alignment					activation of JUN kinase activity|interspecies interaction between organisms|negative regulation of protein import into nucleus|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|regulation of Wnt receptor signaling pathway|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleolus|nucleus	cyclin binding|Tat protein binding			ovary(1)	1						GCGGCGCGGCGCGGGCTCGGC	0.771		NA											5	4	---	---	---	---	NA	NA	NA	NA
CHD7	55636	broad.mit.edu	37	8	61693942	61693943	+	In_Frame_Ins	INS	-	-	AAAGCA			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chr8:61693942_61693943insAAAGCA	uc003xue.2	+	3	2526_2527	c.2049_2050insAAAGCA	c.(2047-2052)insAAAGCA	p.685_686insKA		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	685_686	Lys-rich.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity	p.556_871dup(1)		ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAAAGGAAAAGAAAGCAAAAAC	0.45		NA											6	2	---	---	---	---	NA	NA	NA	NA
DACH2	117154	broad.mit.edu	37	X	85969660	85969661	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DQ-5629-01A-01D-1870-08	TCGA-DQ-5629-10A-01D-1870-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	e748f828-0b80-47f3-aa92-fb3b2be0dcc2	1b1a16fa-937e-4a09-a53e-20a9057b47d8	g.chrX:85969660_85969661insA	uc004eew.2	+	6	1211_1212	c.1041_1042insA	c.(1039-1044)GCCAACfs	p.A347fs	DACH2_uc004eex.2_Frame_Shift_Ins_p.A334fs|DACH2_uc010nmq.2_Frame_Shift_Ins_p.A213fs|DACH2_uc011mra.1_Frame_Shift_Ins_p.A180fs|DACH2_uc010nmr.2_Frame_Shift_Ins_p.A128fs|DACH2_uc004eey.2_Frame_Shift_Ins_p.A30fs|DACH2_uc004eez.2_Frame_Shift_Ins_p.A30fs	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	347_348					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						ATACTATTGCCAACATGGCTGC	0.446		NA											21	33	---	---	---	---	NA	NA	NA	NA
