Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48467402	48467402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ABCA13	NM_152701	exon42	c.C12499T	p.H4167Y	AAATCTCACATTG	.	106.0	52.0	151.0	0.0	.	521
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40024989	40024989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACLY	NM_001096	exon28	c.G3184A	p.V1062M	CCAGCACAAAGAT	.	48.0	19.0	76.0	0.0	.	228
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35085586	35085586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACTC1	NM_005159	exon3	c.C314T	p.T105I	AGCAGGGTGGGGT	.	88.0	62.0	155.0	0.0	.	92
ACTN2	88	ucsc.edu;bcgsc.ca	37	1	236906333	236906333	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACTN2	NM_001103	exon11	c.T1245C	p.T415T	CGAGACTTGGGCT	.	40.0	4.0	59.0	0.0	.	95
ALKBH3	221120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	43923153	43923153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ALKBH3	NM_139178	exon8	c.A547T	p.N183Y	TATCGCAATGAGA	.	65.0	26.0	104.0	0.0	.	90
ALKBH4	54784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102100057	102100057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ALKBH4	NM_017621	exon2	c.G315T	p.R105S	CTGCTTCCTCCGT	.	29.0	12.0	56.0	0.0	.	90
AMPD1	270	ucsc.edu;bcgsc.ca	37	1	115218550	115218550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	AMPD1	NM_000036	exon11	c.A1562G	p.E521G	GTGGCCTCAAACA	.	28.0	4.0	42.0	0.0	.	293
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9255525	9255525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD12	NM_015208	exon9	c.A2260T	p.I754F	GACAAGATTAAAA	.	24.0	11.0	64.0	0.0	.	92
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	145474731	145474731	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD34A	NM_001039888	exon4	c.T1403A	p.L468X	GCAAATTGGTGAG	.	43.0	16.0	27.0	0.0	.	68
ANKRD52	283373	ucsc.edu;bcgsc.ca	37	12	56648360	56648360	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD52	NM_173595	exon8	c.693+2T>C	.	GCCCTGACCTCCG	.	45.0	5.0	61.0	0.0	.	70
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119087231	119087231	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ARHGAP31	NM_020754	exon3	c.C216G	p.G72G	GTTTGGCTCAGAT	.	86.0	57.0	86.0	0.0	.	92
ARMC3	219681	ucsc.edu;bcgsc.ca	37	10	23326201	23326201	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ARMC3	NM_173081	exon19	c.T2412C	p.A804A	GCAGGCTCTGGCT	.	51.0	5.0	108.0	0.0	.	90
ASNS	440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97481701	97481701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ASNS	NM_133436	exon13	c.G1556A	p.R519H	ACTTGACGGTAGT	.	125.0	50.0	135.0	0.0	.	91
ASPHD1	253982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29912566	29912566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ASPHD1	NM_181718	exon1	c.C274T	p.L92F	CTGTTCCTCTGGT	.	110.0	22.0	92.0	0.0	.	68
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96795907	96795907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ATG2B	NM_018036	exon12	c.A1795C	p.S599R	CAGTACTAAAATA	.	85.0	50.0	166.0	0.0	.	93
ATP6V0A2	23545	ucsc.edu;bcgsc.ca	37	12	124220107	124220107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ATP6V0A2	NM_012463	exon8	c.A761G	p.N254S	ATCCAAACACAGC	.	57.0	5.0	61.0	0.0	.	92
BIRC6	57448	ucsc.edu;bcgsc.ca	37	2	32773060	32773060	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	BIRC6	NM_016252	exon64	c.A12954G	p.E4318E	AGAGGAACATGTT	.	45.0	4.0	77.0	0.0	.	233
C12orf40	283461	ucsc.edu;bcgsc.ca	37	12	40040182	40040182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C12orf40	NM_001031748	exon4	c.C254T	p.P85L	AAATGCCCCTAAG	.	42.0	4.0	93.0	0.0	.	96
C16orf54	283897	ucsc.edu;bcgsc.ca	37	16	29755768	29755768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_175900	exon2	c.T505C	p.W169R	CAGCCCAGCTCAC	.	42.0	4.0	35.0	0.0	.	.
C1QBP	708	ucsc.edu;bcgsc.ca	37	17	5336663	5336663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C1QBP	NM_001212	exon5	c.T649C	p.S217P	ATTCAGACTCGCC	.	37.0	4.0	83.0	0.0	.	91
C5	727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123792742	123792742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C5	NM_001735	exon7	c.A691G	p.I231V	GCTCGATTGAGAC	.	186.0	88.0	389.0	0.0	.	92
C9orf24	84688	ucsc.edu;bcgsc.ca	37	9	34385758	34385758	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C9orf24	NM_032596	exon2	c.C157A	p.R53R	CATGTCGCTCCAT	.	36.0	4.0	113.0	0.0	.	91
CALCA	796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14990439	14990439	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CALCA	NM_001741	exon4	c.T332A	p.I111N	ACCCCAATTGCAG	.	130.0	64.0	190.0	0.0	.	514
CASP7	840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115457351	115457351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CASP7	NM_001267057	exon2	c.G323A	p.R108H	TGTACCGTCCCTC	.	75.0	17.0	126.0	0.0	.	660
CD27	939	ucsc.edu;bcgsc.ca	37	12	6559457	6559457	+	Silent	SNP	C	C	T	rs199876113		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CD27	NM_001242	exon3	c.C387T	p.T129T	GCTGACCGCTCGG	.	37.0	4.0	47.0	0.0	C|0.999;T|0.000	659
CDKL5	6792	ucsc.edu;bcgsc.ca	37	X	18664147	18664147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CDKL5	NM_003159	exon19	c.A2734G	p.R912G	GGCAGAAGACAGA	.	34.0	4.0	63.0	0.0	.	838
CISH	1154	hgsc.bcm.edu;bcgsc.ca	37	3	50645109	50645109	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CISH	NM_013324	exon4	c.757delG	p.A253fs	CGTCGGCCACCAG	.	76.0	46.0	140.0	0.0	.	710
CLN5	1203	ucsc.edu;bcgsc.ca	37	13	77569324	77569324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CLN5	NM_006493	exon2	c.A447G	p.P149P	AGCCCCAGTATGG	.	56.0	6.0	107.0	1.0	.	91
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10288612	10288612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CMBL	NM_138809	exon3	c.A245T	p.Q82L	GGCTCTTGCCCTA	.	60.0	16.0	57.0	0.0	.	69
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47939598	47939598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CNGA1	NM_001142564	exon10	c.A1120G	p.M374V	TATACATAACAAG	.	92.0	43.0	140.0	0.0	.	92
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103461593	103461593	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	COL11A1	NM_080629	exon27	c.C2283T	p.P761P	ACCAGGGGGACCC	.	20.0	16.0	88.0	0.0	.	586
CRIP3	401262	ucsc.edu;bcgsc.ca	37	6	43274203	43274203	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CRIP3	NM_206922	exon5	c.T381C	p.C127C	CTCCCCACAGCCA	.	42.0	4.0	65.0	0.0	.	91
CROCC	9696	ucsc.edu;bcgsc.ca	37	1	17274950	17274950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CROCC	NM_014675	exon18	c.G2639A	p.G880D	ACGCTGGCCTGGC	.	26.0	4.0	41.0	0.0	.	137
CSGALNACT2	55454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43650967	43650967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CSGALNACT2	NM_018590	exon2	c.C370T	p.L124F	GAGTTTCTTCATT	.	66.0	33.0	97.0	0.0	.	69
CSMD2	114784	ucsc.edu;bcgsc.ca	37	1	34037319	34037319	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CSMD2	NM_052896	exon52	c.T7776C	p.T2592T	AGGACAAGTCACA	.	42.0	4.0	60.0	0.0	.	103
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57569523	57569523	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CTNND1	NM_001085461	exon7	c.C1275T	p.H425H	AGTGCACCTTGGA	.	77.0	36.0	128.0	0.0	.	272
CUEDC1	404093	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	55945598	55945598	+	Missense_Mutation	SNP	C	C	G	rs34800498	byfrequency;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CUEDC1	NM_001271875	exon8	c.G947C	p.R316P	TTCCTCCGGGTGG	.	76.0	43.0	102.0	0.0	C|0.958;T|0.042	228
DCUN1D4	23142	broad.mit.edu;ucsc.edu	37	4	52779748	52779748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DCUN1D4	NM_001040402	exon11	c.T877C	p.X293Q	ATGTCCTAGGACT	.	34.0	5.0	48.0	0.0	.	92
DDX17	10521	ucsc.edu;bcgsc.ca	37	22	38897272	38897272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DDX17	NM_006386	exon2	c.G301A	p.G101S	CACCACCTCTTGC	.	29.0	4.0	43.0	0.0	.	229
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84881832	84881832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DNAH6	NM_001370	exon35	c.A5683G	p.M1895V	TGTGGAATGGTGT	.	114.0	6.0	216.0	0.0	.	69
DNAJA1	3301	ucsc.edu;bcgsc.ca	37	9	33037026	33037026	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DNAJA1	NM_001539	exon8	c.G888A	p.K296K	TGTCAAGCATGGA	.	38.0	4.0	72.0	0.0	.	226
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3494936	3494936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DOK7	NM_173660	exon7	c.C1223A	p.P408Q	ACACACCACGCAG	.	33.0	4.0	63.0	0.0	.	91
DPF3	8110	ucsc.edu;bcgsc.ca	37	14	73181159	73181159	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DPF3	NM_012074	exon6	c.A576G	p.E192E	GTGGTCTTCCTGA	.	34.0	4.0	54.0	0.0	.	1
DTNB	1838	ucsc.edu;bcgsc.ca	37	2	25799831	25799831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DTNB	NM_021907	exon8	c.T752C	p.M251T	CCCATCATACTCT	.	44.0	4.0	89.0	0.0	.	137
DUS1L	64118	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80017940	80017940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	DUS1L	NM_022156	exon11	c.G1052T	p.G351V	CGCGCACCTGCCT	.	138.0	25.0	122.0	1.0	.	91
EFEMP1	2202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	56094351	56094351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	EFEMP1	NM_001039349	exon11	c.G1339T	p.A447S	GCATTGCACTTAC	.	36.0	18.0	83.0	1.0	.	520
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6919616	6919616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	EMR1	NM_001256253	exon13	c.G1478A	p.R493H	ATGAGCGCTTCTT	.	133.0	60.0	188.0	0.0	.	526
ERO1L	30001	ucsc.edu;bcgsc.ca	37	14	53149118	53149118	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ERO1L	NM_014584	exon3	c.G243T	p.L81L	CCTCTTCAGGTTT	.	48.0	4.0	119.0	0.0	.	90
EXOC3L2	90332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45730995	45730995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	EXOC3L2	NM_138568	exon5	c.C329A	p.P110Q	ACTGCTGGGTTCT	.	82.0	24.0	85.0	2.0	.	91
FAM102A	399665	ucsc.edu;bcgsc.ca	37	9	130705487	130705487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM102A	NM_001035254	exon11	c.T1139C	p.V380A	TCAATCACAACTG	.	44.0	4.0	66.0	0.0	.	91
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17710586	17710586	+	Missense_Mutation	SNP	C	C	A	rs61746992	byfrequency;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM184B	NM_015688	exon2	c.G823T	p.D275Y	CCAGGTCTCCTTC	.	110.0	45.0	147.0	0.0	C|0.972;G|0.028	23
FAM20B	9917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179013021	179013021	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM20B	NM_014864	exon2	c.C39T	p.L13L	AATTCTCCTTGTC	.	209.0	75.0	127.0	0.0	.	93
FGFBP1	9982	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15938165	15938165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FGFBP1	NM_005130	exon3	c.C91A	p.L31I	TGTGAAGTCCATT	.	300.0	107.0	318.0	2.0	.	90
FLAD1	80308	ucsc.edu;bcgsc.ca	37	1	154956204	154956204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FLAD1	NM_025207	exon1	c.A34G	p.R12G	TTCCAGAGGCAGG	.	41.0	4.0	54.0	0.0	.	93
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152280175	152280175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FLG	NM_002016	exon3	c.A7187G	p.H2396R	TCTTGGTGGCTCT	.	404.0	106.0	393.0	1.0	.	106
FOCAD	54914	ucsc.edu;bcgsc.ca	37	9	20717832	20717832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_017794	exon5	c.G97T	p.G33C	GAAAATGGTTTTT	.	38.0	4.0	78.0	0.0	.	.
GAB1	2549	ucsc.edu;bcgsc.ca	37	4	144381615	144381615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GAB1	NM_207123	exon9	c.A1868G	p.N623S	CCATGAACCCAAA	.	45.0	5.0	57.0	0.0	.	1146
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	65810617	65810617	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GAL3ST3	NM_033036	exon3	c.C657T	p.D219D	GGCGTCGTCGCGC	.	40.0	20.0	49.0	0.0	.	91
GBP2	2634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89573964	89573964	+	Missense_Mutation	SNP	C	C	T	rs200077424		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GBP2	NM_004120	exon11	c.G1670A	p.R557H	AGAAGGCGTTCCT	.	52.0	20.0	74.0	0.0	C|0.999;T|0.001	91
GFRA2	2675	ucsc.edu;bcgsc.ca	37	8	21560353	21560353	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001495	exon7	c.G1182A	p.L394L	GGTCCCCAAGCTG	.	63.0	7.0	146.0	1.0	.	.
GNGT2	2793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47284179	47284179	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GNGT2	NM_031498	exon4	c.C150T	p.L50L	GCCTTTGAGAAAA	.	160.0	64.0	247.0	0.0	.	227
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57596061	57596061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GPR114	NM_153837	exon2	c.C56T	p.A19V	AGAATGCAACAAC	.	47.0	23.0	68.0	0.0	.	90
GREB1L	80000	ucsc.edu;bcgsc.ca	37	18	19020239	19020239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001142966	exon9	c.T959C	p.F320S	CCATGTTCATTTC	.	33.0	4.0	51.0	0.0	.	.
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88583097	88583097	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GRM5	NM_000842	exon3	c.G888A	p.A296A	TTCTCCCGCTAGA	.	146.0	78.0	193.0	0.0	.	949
GSTCD	79807	ucsc.edu;bcgsc.ca	37	4	106647833	106647833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GSTCD	NM_001031720	exon4	c.C992T	p.A331V	AAACAGCAGCTTC	.	38.0	4.0	115.0	0.0	.	92
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44697656	44697656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GUF1	NM_021927	exon15	c.A1740T	p.K580N	TGGCAAAGCCATA	.	63.0	35.0	69.0	0.0	.	91
HAUS5	23354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36106172	36106172	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HAUS5	NM_015302	exon6	c.G369A	p.Q123Q	CACCCAGCGTCGA	.	42.0	22.0	61.0	0.0	.	68
HKDC1	80201	ucsc.edu;bcgsc.ca	37	10	71002998	71002998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HKDC1	NM_025130	exon7	c.A752G	p.D251G	AGGGCGACGAGGG	.	38.0	4.0	80.0	0.0	.	95
HNF1A	6927	ucsc.edu;bcgsc.ca	37	12	121434085	121434085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HNF1A	NM_000545	exon5	c.G976T	p.A326S	CAGCCTGCGACCA	.	28.0	4.0	55.0	0.0	.	1745
ICAM5	7087	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10404831	10404831	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ICAM5	NM_003259	exon8	c.G1827A	p.V609V	GTGCGTGGGCTCC	.	44.0	22.0	56.0	0.0	.	153
IFT80	57560	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	159976324	159976324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	IFT80	NM_020800	exon20	c.T2323C	p.L775L	GCTTTAAACCTAT	.	189.0	121.0	292.0	2.0	.	522
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18188364	18188364	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	IL12RB1	NM_153701	exon5	c.C511T	p.Q171X	GGAACTGCACCTC	.	58.0	22.0	71.0	0.0	.	91
IL36RN	26525	ucsc.edu;bcgsc.ca	37	2	113820248	113820248	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	IL36RN	NM_012275	exon5	c.T462C	p.C154C	GCAGTGTGACTAG	.	28.0	4.0	33.0	0.0	.	91
INSR	3643	ucsc.edu;bcgsc.ca	37	19	7126664	7126664	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	INSR	NM_001079817	exon16	c.2910-2A>G	.	GCTGCCTGGAGGA	.	32.0	4.0	29.0	0.0	.	1381
INTS10	55174	ucsc.edu;bcgsc.ca	37	8	19682425	19682425	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	INTS10	NM_018142	exon8	c.G948A	p.L316L	CATGCTGGTCTTC	.	43.0	4.0	105.0	0.0	.	91
ITPR2	3709	ucsc.edu;bcgsc.ca	37	12	26647251	26647251	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ITPR2	NM_002223	exon39	c.A5205G	p.S1735S	CTTATCTGAATCT	.	41.0	4.0	56.0	0.0	.	542
KAT2A	2648	ucsc.edu;bcgsc.ca	37	17	40270418	40270418	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KAT2A	NM_021078	exon7	c.C1077T	p.F359F	GGACAGGAATCTG	.	49.0	4.0	48.0	0.0	.	523
KIAA0317	9870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75140804	75140804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA0317	NM_001039479	exon9	c.T1091A	p.V364E	TCCTTCACTGAGA	.	50.0	14.0	105.0	0.0	.	525
KIAA1244	57221	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138612924	138612924	+	Silent	SNP	G	G	A	rs140287471		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA1244	NM_020340	exon19	c.G3102A	p.S1034S	TGCCTCGCAGCCC	.	85.0	32.0	135.0	1.0	G|1.000;A|0.000	228
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5920263	5920263	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA2026	NM_001017969	exon8	c.C5733A	p.L1911L	TATAAGGAGAACA	.	53.0	31.0	72.0	0.0	.	92
KIF13B	23303	ucsc.edu;bcgsc.ca	37	8	28980997	28980997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF13B	NM_015254	exon28	c.A3365G	p.D1122G	GCATCATCCTCTG	.	16.0	4.0	81.0	0.0	.	22
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200960199	200960199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF21B	NM_017596	exon18	c.G2533T	p.D845Y	CAGAGTCCAGCAT	.	171.0	47.0	121.0	0.0	.	96
KIF22	3835	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	29816332	29816332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF22	NM_007317	exon12	c.C1875A	p.H625Q	GCTCCACGGCCCC	.	16.0	6.0	15.0	0.0	.	68
KRTAP5-1	387264	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1606219	1606219	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KRTAP5-1	NM_001005922	exon1	c.G261T	p.G87G	ACAGCCCCCCTTG	.	159.0	54.0	168.0	1.0	.	44
LIN28B	389421	ucsc.edu;bcgsc.ca	37	6	105526351	105526351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LIN28B	NM_001004317	exon4	c.A446G	p.K149R	AGCCAAAGAAGTG	.	27.0	4.0	61.0	0.0	.	90
LINC00521	256369	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94467500	94467500	+	RNA	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	.	.	.	.	GCACGGGATGGGA	.	41.0	32.0	89.0	0.0	.	.
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57556190	57556190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRP1	NM_002332	exon14	c.G2293T	p.V765F	GGCAGTGTCTACC	.	72.0	30.0	105.0	0.0	.	596
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	40137651	40137651	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRC4C	NM_001258419	exon7	c.G192A	p.R64R	GTTTTTCCGAACA	.	92.0	39.0	97.0	0.0	.	521
LRRK2	120892	ucsc.edu;bcgsc.ca	37	12	40619068	40619068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRK2	NM_198578	exon1	c.C135A	p.F45L	GGTGTTCACGTAC	.	25.0	4.0	59.0	0.0	.	533
LRRN3	54674	ucsc.edu;bcgsc.ca	37	7	110763773	110763773	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRN3	NM_018334	exon2	c.A945G	p.E315E	AATAGAAGCTACT	.	40.0	4.0	56.0	0.0	.	154
LTA	4049	ucsc.edu;bcgsc.ca	37	6	31540523	31540523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LTA	NM_001159740	exon2	c.A4G	p.T2A	CCCATGACACCAC	.	48.0	4.0	40.0	0.0	.	522
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049572	36049572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MAB21L1	NM_005584	exon1	c.C704T	p.A235V	GCCTCCGCGAACT	.	21.0	18.0	52.0	0.0	.	92
MAP7	9053	ucsc.edu;bcgsc.ca	37	6	136682317	136682317	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MAP7	NM_001198609	exon12	c.A1617G	p.R539R	CTTTTGTCTGGAA	.	13.0	4.0	20.0	0.0	.	90
MCTP1	79772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94275895	94275895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MCTP1	NM_024717	exon5	c.A1066G	p.T356A	CATCTGTGGGCCT	.	16.0	6.0	53.0	0.0	.	92
MKL1	57591	ucsc.edu;bcgsc.ca	37	22	40807623	40807623	+	Missense_Mutation	SNP	T	T	C	rs28661556	alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MKL1	NM_020831	exon15	c.A2567G	p.H856R	GGGGGGTGGTCCA	.	41.0	4.0	43.0	0.0	.	948
MRPL22	29093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	154346429	154346429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MRPL22	NM_014180	exon7	c.G593A	p.R198H	AGCTTCGCAGCCG	.	63.0	33.0	49.0	0.0	.	90
MSH5	4439	broad.mit.edu;ucsc.edu	37	6	31729292	31729292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MSH5	NM_025259	exon22	c.T2135C	p.L712P	ACTGGCTGGCACG	.	26.0	4.0	62.0	1.0	.	661
MYO5A	4644	broad.mit.edu;bcgsc.ca	37	15	52656807	52656807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MYO5A	NM_000259	exon24	c.T3253C	p.F1085L	GACTGAACTCATT	.	130.0	6.0	199.0	0.0	.	93
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17212654	17212654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MYO9B	NM_001130065	exon2	c.A127G	p.T43A	GACAGCACCACCT	.	48.0	4.0	59.0	1.0	.	67
NHS	4810	ucsc.edu;bcgsc.ca	37	X	17744747	17744747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NHS	NM_198270	exon6	c.T2458C	p.S820P	AGCATCTCTTTCA	.	43.0	4.0	41.0	0.0	.	197
NOTCH4	4855	ucsc.edu;bcgsc.ca	37	6	32169089	32169089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NOTCH4	NM_004557	exon22	c.T3944C	p.L1315P	CGGGCCAGGGCAA	.	43.0	4.0	85.0	0.0	.	1321
NOTCH4	4855	ucsc.edu;bcgsc.ca	37	6	32183154	32183154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NOTCH4	NM_004557	exon12	c.T1870C	p.C624R	CCTCACAGAGCTG	.	45.0	4.0	92.0	0.0	.	1321
NUDT21	11051	ucsc.edu;bcgsc.ca	37	16	56481870	56481870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NUDT21	NM_007006	exon2	c.A148G	p.K50E	GCTCTTTTGTACC	.	43.0	4.0	107.0	0.0	.	90
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17640200	17640200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NUP153	NM_005124	exon15	c.G1816C	p.G606R	CACTTCCTTCTTT	.	78.0	24.0	92.0	0.0	.	637
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24884257	24884257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NYNRIN	NM_025081	exon9	c.T3302C	p.M1101T	GCTTCATGGACTC	.	76.0	27.0	89.0	0.0	.	3
OR11L1	391189	broad.mit.edu;bcgsc.ca	37	1	248004537	248004537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR11L1	NM_001001959	exon1	c.T662C	p.I221T	GACACAATGAAAA	.	115.0	6.0	150.0	0.0	.	71
OR13J1	392309	ucsc.edu;bcgsc.ca	37	9	35869605	35869605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR13J1	NM_001004487	exon1	c.A794G	p.K265R	GCTTCCTTACTCT	.	35.0	4.0	52.0	0.0	.	68
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080221	29080221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR2J3	NM_001005216	exon1	c.C554A	p.P185Q	AAGTTCCAGCACT	.	301.0	85.0	328.0	0.0	.	90
OR4D2	124538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56247344	56247344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR4D2	NM_001004707	exon1	c.G328T	p.A110S	GGAGGTGCCATGG	.	56.0	15.0	103.0	0.0	.	114
OTUD3	23252	ucsc.edu;bcgsc.ca	37	1	20234091	20234091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_015207	exon8	c.A1049G	p.Q350R	AACAGCAGTGGAT	.	22.0	5.0	55.0	1.0	.	.
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	63282697	63282698	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OTX1	NM_014562	exon5	c.311_312del	p.104_104del	GAACCAAGAGCCG	.	92.0	22.0	173.0	0.0	.	70
PAK2	5062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196547330	196547330	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PAK2	NM_002577	exon13	c.G1242A	p.V414V	AGAGGTGGTTACA	.	146.0	40.0	135.0	0.0	.	957
PALD1	27143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72324191	72324191	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_014431	exon19	c.T2334C	p.Y778Y	GCGCTATGTCTGC	.	79.0	19.0	168.0	0.0	.	.
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105162878	105162878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PDCD11	NM_014976	exon4	c.C238T	p.L80L	TAGTCCCTGTGTG	.	216.0	59.0	348.0	0.0	.	275
PDZD2	23037	ucsc.edu;bcgsc.ca	37	5	32090075	32090075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PDZD2	NM_178140	exon19	c.T6521C	p.L2174P	CCTCCCTTCAAAC	.	42.0	4.0	100.0	0.0	.	563
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33799862	33799862	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PHC2	NM_198040	exon9	c.C1587T	p.T529T	GAGGTCGGTCAGT	.	108.0	48.0	98.0	0.0	.	227
PKD1	5310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2149979	2149979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PKD1	NM_000296	exon29	c.G9806T	p.R3269L	GGCGGCCGGTCCC	.	167.0	70.0	198.0	2.0	.	91
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71963537	71963537	+	RNA	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PKD1L3	.	.	.	.	TAACAAATTTGAG	.	139.0	63.0	189.0	0.0	.	68
PKM	5315	ucsc.edu;bcgsc.ca	37	15	72499166	72499166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001206796	exon9	c.T1265C	p.V422A	TTGGCCACATCAC	.	51.0	4.0	85.0	0.0	.	.
PLA2G2E	30814	ucsc.edu;bcgsc.ca	37	1	20248851	20248851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PLA2G2E	NM_014589	exon3	c.G226A	p.G76S	CACAGCCCAGCTT	.	42.0	4.0	113.0	0.0	.	90
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208865840	208865840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PLEKHM3	NM_001080475	exon2	c.A524G	p.Q175R	AATGGCTGCTGCT	.	156.0	84.0	168.0	0.0	.	23
POLG	5428	ucsc.edu;bcgsc.ca	37	15	89873328	89873328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	POLG	NM_002693	exon3	c.A839G	p.E280G	TACTGCTCCCTGA	.	48.0	4.0	63.0	1.0	.	228
PPIP5K1	9677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43827486	43827486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPIP5K1	NM_001130858	exon31	c.G3688C	p.E1230Q	CTTGCTCCCCTTC	.	215.0	84.0	262.0	0.0	.	90
PPP1R12A	4659	broad.mit.edu;bcgsc.ca	37	12	80175618	80175618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP1R12A	NM_002480	exon23	c.T2932C	p.S978P	ACAGTGATCTATC	.	112.0	5.0	152.0	0.0	.	273
PPP1R1A	5502	ucsc.edu;bcgsc.ca	37	12	54975806	54975806	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP1R1A	NM_006741	exon5	c.A357G	p.P119P	TGTGTCTGGGATC	.	50.0	5.0	64.0	0.0	.	226
PPP2R1A	5518	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52716334	52716334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	PPP2R1A,NS,carcinoma,0	PPP2R1A	NM_014225	exon6	c.C778G	p.R260G	CGCGTCCGCTACA	.	27.0	13.0	25.0	0.0	.	1666
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42975774	42975774	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP2R5D	NM_006245	exon7	c.C828T	p.I276I	TTATATCCGTAGG	.	126.0	70.0	109.0	0.0	.	1082
PRAMEF2	65122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12920107	12920107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PRAMEF2	NM_023014	exon3	c.C847T	p.H283Y	AGTGGGCACCTGG	.	58.0	20.0	91.0	0.0	.	68
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69021775	69021775	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PREX2	NM_024870	exon25	c.A3063T	p.E1021D	CTTAGAAACCCAA	.	102.0	29.0	93.0	0.0	.	390
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48839897	48839897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PRKDC	.	.	.	.	CTCAGGCCCAGTT	.	128.0	31.0	111.0	0.0	.	1515
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139189232	139189232	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PSD2	NM_032289	exon2	c.T207C	p.H69H	CTTCCATGGCCTC	.	168.0	88.0	231.0	0.0	.	91
PSMD5	5711	ucsc.edu;bcgsc.ca	37	9	123595662	123595662	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PSMD5	NM_005047	exon2	c.G246T	p.R82R	GAGGTTCCGGGCC	.	40.0	4.0	62.0	0.0	.	90
PTEN	5728	ucsc.edu;bcgsc.ca	37	10	89711906	89711906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	PTEN,NS,carcinoma,+1	PTEN	NM_000314	exon6	c.T524C	p.V175A	GCTATGTGTATTA	.	46.0	4.0	71.0	0.0	.	17735
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214557484	214557484	+	Missense_Mutation	SNP	G	G	A	rs200947677		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PTPN14	NM_005401	exon13	c.C1714T	p.R572W	GTGGCCGTGGGTA	.	54.0	18.0	55.0	0.0	G|0.999;A|0.001	290
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40714481	40714481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PTPRT	NM_133170	exon29	c.T3916C	p.Y1306H	GCCAGTACTGCAT	.	102.0	30.0	82.0	0.0	.	664
RAB34	83871	ucsc.edu;bcgsc.ca	37	17	27042076	27042076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RAB34	NM_001144943	exon9	c.A749G	p.E250G	CAGTACTCAGCCT	.	39.0	4.0	63.0	0.0	.	227
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205084043	205084043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RBBP5	NM_005057	exon3	c.C92T	p.T31I	TTAAAGGTGCAAG	.	369.0	120.0	192.0	0.0	.	226
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50095360	50095360	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RBM6	NM_005777	exon9	c.G1893A	p.R631R	TCGAAGGGAAGGG	.	52.0	35.0	49.0	0.0	.	280
RET	5979	ucsc.edu;bcgsc.ca	37	10	43613903	43613903	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RET	NM_020975	exon13	c.A2367G	p.K789K	CATCAAATTGTAT	.	52.0	5.0	86.0	0.0	.	4507
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	101118126	101118126	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RGS22	NM_015668	exon1	c.G24T	p.A8A	CCTACCCGCGGTG	.	60.0	34.0	40.0	0.0	.	140
RHBDF1	64285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	111695	111695	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RHBDF1	NM_022450	exon10	c.1209-1G>A	.	AAGGGCCTGCGGG	.	45.0	21.0	45.0	0.0	.	92
RING1	6015	broad.mit.edu;bcgsc.ca	37	6	33178961	33178961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RING1	NM_002931	exon5	c.C482T	p.P161L	CGATACCAGGGTC	.	23.0	3.0	35.0	0.0	.	159
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5662625	5662625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RNF216	NM_207111	exon17	c.A2638G	p.M880V	GCCCCATGTTGAG	.	63.0	17.0	115.0	0.0	.	274
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45089836	45089836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RRP1B	NM_015056	exon2	c.C202A	p.P68T	GATGAACCCCTTC	.	192.0	103.0	310.0	0.0	.	91
SASH1	23328	ucsc.edu;bcgsc.ca	37	6	148869462	148869462	+	Missense_Mutation	SNP	G	G	T	rs143577116	byfrequency;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SASH1	NM_015278	exon20	c.G3512T	p.R1171L	TCTGCCGAAAGCC	.	43.0	4.0	57.0	0.0	G|0.999;A|0.001	90
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18436227	18436227	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SATB1	NM_002971	exon7	c.T933A	p.P311P	ACTGATAGGTGTT	.	103.0	60.0	156.0	0.0	.	228
SETDB2	83852	ucsc.edu;bcgsc.ca	37	13	50054356	50054356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SETDB2	NM_031915	exon8	c.A907G	p.T303A	TTTAGAACAAAAT	.	43.0	4.0	118.0	0.0	.	91
SFXN3	81855	ucsc.edu;bcgsc.ca	37	10	102794566	102794566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SFXN3	NM_030971	exon3	c.T127C	p.S43P	CTGCTGTCCGGGG	.	55.0	5.0	90.0	0.0	.	91
SH3GL2	6456	ucsc.edu;bcgsc.ca	37	9	17786386	17786386	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SH3GL2	NM_003026	exon4	c.A195G	p.R65R	TTCCAGAGCTAAG	.	42.0	4.0	77.0	0.0	.	91
SIGIRR	59307	ucsc.edu;bcgsc.ca	37	11	408175	408175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SIGIRR	NM_021805	exon4	c.T238C	p.S80P	CACTGGACACAAG	.	44.0	4.0	43.0	0.0	.	90
SLC19A2	10560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169446920	169446920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC19A2	NM_006996	exon2	c.T280C	p.Y94H	GGAGGTAGTCTGT	.	180.0	57.0	141.0	2.0	.	90
SLC35A2	7355	ucsc.edu;bcgsc.ca	37	X	48763797	48763797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC35A2	NM_001042498	exon3	c.T298C	p.F100L	GGAGGAAGAGAAC	.	46.0	4.0	52.0	0.0	.	193
SLC44A2	57153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10753056	10753056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC44A2	NM_020428	exon21	c.G1943A	p.G648D	TCGTTGGCTCCTA	.	205.0	82.0	310.0	0.0	.	91
SLC8A2	6543	ucsc.edu;bcgsc.ca	37	19	47935595	47935595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC8A2	NM_015063	exon9	c.G2218A	p.V740M	GGGGCACACAGGC	.	32.0	4.0	40.0	0.0	.	94
SMCR7L	54471	ucsc.edu;bcgsc.ca	37	22	39910017	39910017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SMCR7L	NM_019008	exon6	c.T1081C	p.S361P	TGCCGATCTCTGT	.	21.0	4.0	39.0	0.0	.	90
SMNDC1	10285	ucsc.edu;bcgsc.ca	37	10	112063292	112063292	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SMNDC1	NM_005871	exon2	c.A54G	p.Q18Q	TTCAACTTGCTGG	.	35.0	4.0	70.0	0.0	.	91
SORCS2	57537	ucsc.edu;bcgsc.ca	37	4	7716009	7716009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SORCS2	NM_020777	exon16	c.A2032G	p.R678G	CGGAAAAGAAAGT	.	45.0	4.0	48.0	0.0	.	91
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121383718	121383718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SORL1	NM_003105	exon7	c.T946C	p.L316L	CATCTCTTGGGCA	.	90.0	32.0	97.0	0.0	.	228
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16257658	16257658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SPEN	NM_015001	exon11	c.T4923G	p.S1641R	TCCAAGTGTCACA	.	64.0	20.0	68.0	0.0	.	298
SPTB	6710	ucsc.edu;bcgsc.ca	37	14	65239594	65239594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SPTB	NM_001024858	exon25	c.T5257C	p.F1753L	CGATGAAGGCATT	.	41.0	4.0	67.0	0.0	.	100
ST3GAL5	8869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86075030	86075030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ST3GAL5	NM_003896	exon4	c.G616A	p.G206R	CTAATCCGTGCAG	.	36.0	5.0	49.0	0.0	.	90
SUCLG1	8802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84660559	84660559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SUCLG1	NM_003849	exon6	c.G590A	p.G197D	ACAATGCCTTAAC	.	81.0	34.0	172.0	0.0	.	90
SYNE3	161176	ucsc.edu;bcgsc.ca	37	14	95906121	95906121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_152592	exon12	c.A2074G	p.R692G	CCAGCCTCTAAAG	.	21.0	4.0	44.0	0.0	.	.
TACR3	6870	ucsc.edu;bcgsc.ca	37	4	104640338	104640338	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TACR3	NM_001059	exon1	c.T495C	p.P165P	TGTGATAGGAAAG	.	26.0	4.0	75.0	0.0	.	525
TAL1	6886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47685719	47685719	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TAL1	NM_003189	exon4	c.C669T	p.L223L	CTTGCTGAGCTTC	.	178.0	71.0	224.0	0.0	.	1082
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160053178	160053178	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TANC1	NM_033394	exon18	c.C3039T	p.H1013H	GGGCCACGGTGAC	.	100.0	34.0	106.0	0.0	.	92
TASP1	55617	ucsc.edu;bcgsc.ca	37	20	13610722	13610722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TASP1	NM_017714	exon2	c.A4G	p.T2A	CCATGGTCATTCT	.	32.0	6.0	68.0	0.0	.	90
TBC1D9	23158	ucsc.edu;bcgsc.ca	37	4	141622704	141622704	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TBC1D9	NM_015130	exon2	c.C195A	p.I65I	GTACAAGATTCGG	.	26.0	4.0	89.0	0.0	.	23
TCHP	84260	ucsc.edu;bcgsc.ca	37	12	110341849	110341849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TCHP	NM_001143852	exon3	c.C296T	p.A99V	TGCTGGCCAGAGA	.	28.0	4.0	59.0	0.0	.	91
TENC1	23371	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	53457144	53457144	+	Missense_Mutation	SNP	G	G	A	rs201129709		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TENC1	NM_015319	exon27	c.G4034A	p.R1345H	TCTTTCGCCGCCA	.	128.0	56.0	114.0	0.0	G|0.999;A|0.000	92
TENC1	23371	ucsc.edu;bcgsc.ca	37	12	53453408	53453408	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TENC1	NM_015319	exon18	c.A2013G	p.P671P	GAAACCAGCCACT	.	36.0	4.0	58.0	0.0	.	92
TENM2	57451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167674101	167674101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001122679	exon27	c.A6130G	p.N2044D	ATGGTCAACCTCC	.	36.0	15.0	60.0	1.0	.	.
TENM3	55714	ucsc.edu;bcgsc.ca	37	4	183713755	183713755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001080477	exon25	c.T5930C	p.L1977P	GAGTCCTAAAGAC	.	39.0	4.0	49.0	0.0	.	.
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183675952	183675952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001080477	exon21	c.G4432C	p.A1478P	TCCCTGGCTGCTT	.	43.0	21.0	91.0	0.0	.	.
TM2D2	83877	ucsc.edu;bcgsc.ca	37	8	38851161	38851161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TM2D2	NM_078473	exon3	c.A334G	p.S112G	CGTCGCTGTAGGC	.	27.0	4.0	56.0	0.0	.	90
TMEM225	338661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123753908	123753908	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	TMEM225,mouth,carcinoma,-1	TMEM225	NM_001013743	exon4	c.T615A	p.R205R	GTGTGCACGGACA	.	206.0	94.0	201.0	0.0	.	93
TMEM254	80195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	81850592	81850592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001270367	exon4	c.G363C	p.W121C	ACTCTGGTTCCTA	.	89.0	31.0	186.0	0.0	.	.
TNKS	8658	ucsc.edu;bcgsc.ca	37	8	9622231	9622231	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TNKS	NM_003747	exon23	c.A3378G	p.Q1126Q	GATGCAAAGTACT	.	44.0	4.0	86.0	0.0	.	660
TNPO2	30000	ucsc.edu;bcgsc.ca	37	19	12817572	12817572	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TNPO2	NM_013433	exon13	c.G1308T	p.L436L	CGGGATCAGCTCA	.	42.0	4.0	70.0	0.0	.	227
TRAPPC9	83696	ucsc.edu;bcgsc.ca	37	8	141034128	141034128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRAPPC9	NM_031466	exon18	c.A2899G	p.T967A	CTTCAGTGTGGCC	.	46.0	4.0	78.0	0.0	.	228
TRDN	10345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	123825006	123825006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRDN	NM_001256020	exon8	c.G651T	p.K217N	TTTAGTCTTTTCT	.	248.0	209.0	510.0	0.0	.	91
TRIO	7204	ucsc.edu;bcgsc.ca	37	5	14502722	14502722	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRIO	NM_007118	exon54	c.A8367G	p.K2789K	CTGGAAAGACAAC	.	38.0	4.0	58.0	0.0	.	562
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38572587	38572587	+	Missense_Mutation	SNP	G	G	A	rs200071342		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTC3	NM_001001894	exon45	c.G5905A	p.V1969M	AAAAACGTGCGTG	.	138.0	57.0	210.0	0.0	G|0.999;A|0.001	590
TTI1	9675	ucsc.edu;bcgsc.ca	37	20	36641352	36641352	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTI1	NM_014657	exon3	c.C867A	p.I289I	AATAAGGATAGTC	.	40.0	4.0	42.0	0.0	.	94
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43108685	43108685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTPAL	NM_001039199	exon2	c.T46G	p.S16A	GTGGCCTCACTCT	.	60.0	35.0	59.0	0.0	.	153
USP40	55230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234394614	234394614	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	USP40	NM_018218	exon28	c.C3240T	p.D1080D	CAGCACGTCCTGG	.	9.0	9.0	22.0	0.0	.	455
VANGL2	57216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160388869	160388869	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VANGL2	NM_020335	exon4	c.C270T	p.R90R	CACACGCATCGCC	.	115.0	21.0	67.0	0.0	.	91
VCL	7414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75830792	75830792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VCL	NM_003373	exon4	c.450delG	p.V150fs	AGAGGTGGTGGAG	.	106.0	61.0	201.0	0.0	.	93
VWCE	220001	ucsc.edu;bcgsc.ca	37	11	61036446	61036446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VWCE	NM_152718	exon15	c.C1830T	p.S610S	AGGGCAGGAGTCC	.	20.0	4.0	45.0	0.0	.	91
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177017675	177017675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR17	NM_170710	exon2	c.C5T	p.A2V	CTATGGCTTGGAT	.	48.0	17.0	121.0	0.0	.	95
WDR18	57418	ucsc.edu;bcgsc.ca	37	19	994280	994280	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR18	NM_024100	exon10	c.G1236A	p.L412L	CAACCTGCGCAAG	.	45.0	4.0	63.0	0.0	.	91
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43649280	43649280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR65	NM_001195831	exon4	c.G493C	p.D165H	CCACAGGATAACA	.	80.0	40.0	140.0	0.0	.	91
WTIP	126374	ucsc.edu;bcgsc.ca	37	19	34986661	34986661	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WTIP	NM_001080436	exon7	c.A1137G	p.A379A	CGTGGCATGTTAC	.	39.0	4.0	75.0	0.0	.	68
ZBTB7C	201501	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	45555810	45555810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZBTB7C	NM_001039360	exon3	c.C1681T	p.R561C	GCGCGCGCCCGAA	.	26.0	10.0	33.0	0.0	.	91
ZNF214	7761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7021165	7021165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF214	NM_013249	exon3	c.A1749C	p.K583N	ACGGCATTTGTAA	.	66.0	22.0	111.0	0.0	.	91
ZNF420	147923	ucsc.edu;bcgsc.ca	37	19	37619509	37619509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF420	NM_144689	exon5	c.C1616T	p.A539V	GAAAGGCCTTTGC	.	45.0	4.0	89.0	0.0	.	90
ZNF493	284443	ucsc.edu;bcgsc.ca	37	19	21607674	21607674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF493	NM_001076678	exon4	c.A2213G	p.D738G	CTGGAGACAAACC	.	47.0	4.0	64.0	0.0	.	516
ZNF682	91120	bcgsc.ca;mdanderson.org	37	19	20117276	20117276	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF682	NM_033196	exon4	c.A1035G	p.E345E	GCCACATTCTTCA	.	38.0	5.0	68.0	0.0	.	92
ZNF695	57116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247162655	247162655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001204221	exon3	c.A254G	p.H85R	CCTGAGTGTCTGG	.	196.0	85.0	310.0	0.0	.	.
ZNF713	349075	ucsc.edu;bcgsc.ca	37	7	56007647	56007647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF713	NM_182633	exon4	c.A1241G	p.E414G	TATGTGAATATAA	.	50.0	4.0	50.0	0.0	.	92
ZNF782	158431	ucsc.edu;bcgsc.ca	37	9	99581617	99581617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF782	NM_001001662	exon6	c.C688T	p.L230F	TAACAAGGGCAGC	.	39.0	4.0	93.0	0.0	.	90
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88966173	88966173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF804B	NM_181646	exon4	c.C3877T	p.P1293S	TTTATTCCTACAT	.	127.0	62.0	211.0	0.0	.	101
ZNF99	7652	ucsc.edu;bcgsc.ca	37	19	22941840	22941840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF99	NM_001080409	exon4	c.G871A	p.G291S	CTTTGCCACATTC	.	42.0	4.0	73.0	0.0	.	24
