Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABHD12	26090	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25287496	25287496	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ABHD12	NM_001042472	exon10	c.G923C	p.S308T	ATTCCACTACTTG	.	84.0	11.0	101.0	1.0	.	91
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150531572	150531572	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ADAMTSL4	NM_019032	exon16	c.T2694C	p.P898P	GCCCCCTGACATG	.	90.0	45.0	71.0	0.0	.	92
AKR1C1	1645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	5005692	5005692	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AKR1C1	NM_001353	exon1	c.T56G	p.L19R	CTGTCCTGGGATT	.	180.0	16.0	221.0	0.0	.	516
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74283866	74283866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ALB	NM_000477	exon12	c.T1490A	p.V497D	ACAGAGTCACCAA	.	104.0	24.0	90.0	0.0	.	96
ANKHD1	54882	broad.mit.edu;mdanderson.org	37	5	139876827	139876827	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ANKHD1	NM_017747	exon15	c.C2968T	p.Q990X	CCAGCTCAGACGC	.	46.0	11.0	27.0	0.0	.	185
AP2A1	160	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50302173	50302173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AP2A1	NM_130787	exon8	c.T929G	p.L310R	CCATCCTCTTCGA	.	90.0	16.0	102.0	0.0	.	92
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50302171	50302171	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	AP2A1	NM_130787	exon8	c.C927T	p.I309I	CGCCATCCTCTTC	.	90.0	17.0	104.0	0.0	.	92
AQPEP	0	broad.mit.edu;bcgsc.ca	37	5	115327955	115327955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_173800	exon5	c.C1241T	p.S414F	TTGTCTCCCACGA	.	123.0	6.0	116.0	0.0	.	.
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94652058	94652058	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ARHGAP29	NM_004815	exon16	c.A1777C	p.T593P	TACCAGTTTCTGA	.	108.0	16.0	146.0	0.0	.	296
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99030913	99030913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001198879	exon4	c.C729G	p.N243K	GTAGAGGTTGAAG	.	81.0	34.0	78.0	0.0	.	.
ATP8B4	79895	ucsc.edu;bcgsc.ca	37	15	50271815	50271815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ATP8B4	NM_024837	exon12	c.A1033G	p.S345G	CTTACCTCACATA	.	52.0	4.0	36.0	0.0	.	140
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160194151	160194151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	BAZ2B	NM_013450	exon32	c.G5587C	p.E1863Q	TCCGTTCTAGTGC	.	185.0	28.0	169.0	0.0	.	94
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	23793427	23793427	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001199864	exon8	c.C891T	p.T297T	CCGGACCACCAAC	.	88.0	9.0	104.0	0.0	.	.
C6orf62	81688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24714631	24714631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	C6orf62	NM_030939	exon3	c.T344G	p.L115R	GGCCAAAGAATGA	.	143.0	29.0	187.0	0.0	.	90
CLEC19A	728276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19310149	19310149	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001256720	exon2	c.C243T	p.A81A	GCTGGCCTCCATC	.	94.0	25.0	88.0	0.0	.	.
CNTN6	27255	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	1371498	1371498	+	Missense_Mutation	SNP	G	G	A	rs142802849		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CNTN6	NM_014461	exon11	c.G1243A	p.V415I	AGTCCAGTTAAAA	.	312.0	80.0	341.0	1.0	G|1.000;A|0.000	345
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51095517	51095517	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	COBL	NM_015198	exon10	c.G3276A	p.K1092K	TTTTTTCTTCGGC	.	346.0	114.0	397.0	1.0	.	95
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7571282	7571282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	COL28A1	NM_001037763	exon3	c.A378T	p.L126F	CCCTATTAAATTC	.	168.0	59.0	106.0	0.0	.	93
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41600227	41600227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	CYP2A13	NM_000766	exon7	c.T1051C	p.Y351H	ATGCCCTACACAG	.	212.0	39.0	215.0	0.0	.	93
DARS2	55157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	173825830	173825830	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DARS2	NM_018122	exon16	c.G1701A	p.L567L	CCATCTGCTCCAG	.	107.0	8.0	58.0	0.0	.	90
DBT	1629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100672083	100672083	+	Missense_Mutation	SNP	C	C	T	rs150934375		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DBT	NM_001918	exon9	c.G1127A	p.R376H	TGGAGGCGGTTCA	.	84.0	24.0	87.0	0.0	C|1.000;T|0.000	91
DCLRE1A	9937	broad.mit.edu;bcgsc.ca	37	10	115609611	115609611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DCLRE1A	NM_014881	exon2	c.T1253C	p.L418P	GCAGCAAGCTTCC	.	110.0	7.0	86.0	0.0	.	228
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6559930	6559930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	DNHD1	NM_144666	exon16	c.T3215C	p.V1072A	GCCCCGTGCTGCA	.	40.0	4.0	58.0	0.0	.	24
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128426289	128426289	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	ETS1	NM_001143820	exon3	c.C111G	p.N37K	ACCACAGTTCATT	.	164.0	38.0	147.0	0.0	.	1270
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187541970	187541970	+	Missense_Mutation	SNP	C	C	T	rs189271562		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT1	NM_005245	exon10	c.G5770A	p.G1924R	TCTCCCCGATGTT	.	170.0	18.0	215.0	0.0	C|0.999;T|0.000	34
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92613908	92613908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon22	c.A12139T	p.T4047S	CAGTGTACCTGTC	.	74.0	11.0	74.0	1.0	.	73
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92534030	92534030	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FAT3	NM_001008781	exon9	c.C7851T	p.H2617H	GGGCCACTTGGTC	.	58.0	12.0	77.0	0.0	.	73
FDPS	2224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155289686	155289686	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FDPS	NM_001135821	exon10	c.A1026G	p.Q342Q	TCTGCAACGGGCC	.	229.0	133.0	158.0	1.0	.	90
FES	2242	broad.mit.edu;mdanderson.org	37	15	91433348	91433348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FES	NM_001143784	exon8	c.T1076C	p.V359A	GGCAAGTGCTGCA	.	16.0	4.0	18.0	0.0	.	546
FGF6	2251	broad.mit.edu;bcgsc.ca	37	12	4554706	4554706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	FGF6	NM_020996	exon1	c.A31G	p.M11V	GGGACATAGTGAT	.	24.0	7.0	30.0	0.0	.	659
GAB1	2549	broad.mit.edu;bcgsc.ca	37	4	144354861	144354861	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GAB1	NM_207123	exon3	c.A585G	p.E195E	GCCCGAACCCACC	.	115.0	5.0	102.0	0.0	.	1146
GFOD1	54438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13365402	13365402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	GFOD1	NM_018988	exon2	c.T746C	p.V249A	ACAGTGACATCCT	.	38.0	10.0	38.0	0.0	.	92
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	122641077	122641077	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HAS2	NM_005328	exon2	c.G504A	p.S168S	GTGTTGCGAGCTT	.	307.0	174.0	128.0	0.0	.	236
HEATR3	55027	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50134209	50134209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HEATR3	NM_182922	exon13	c.A1668C	p.R556S	GGTTAGAGTGAAT	.	67.0	9.0	64.0	0.0	.	92
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152185637	152185637	+	Missense_Mutation	SNP	C	C	A	rs150101773	byfrequency;alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	HRNR	NM_001009931	exon3	c.G8468T	p.S2823I	CCAGAACTTCCCC	.	551.0	54.0	358.0	0.0	C|1.000;T|0.000	93
INO80B	83444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74683301	74683301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	INO80B	NM_031288	exon4	c.G442A	p.E148K	GAAGAGGAGGAAC	.	257.0	19.0	240.0	0.0	.	226
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128247508	128247508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	IWS1	NM_017969	exon11	c.A2059T	p.R687W	TAGGCCTAGACCA	.	391.0	50.0	357.0	0.0	.	91
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	2869140	2869140	+	Silent	SNP	C	C	T	rs184844767		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KCNQ1	NM_000218	exon16	c.C1938T	p.G646G	TGGCGGCTCCGTC	.	45.0	9.0	45.0	0.0	A|0.002;C|0.998	515
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	86691306	86691306	+	Missense_Mutation	SNP	C	C	T	rs200618359		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KDM3A	NM_001146688	exon9	c.C974T	p.S325F	CCAACTCTCCACC	.	198.0	59.0	150.0	0.0	C|0.999;T|0.000	291
KIAA1217	56243	ucsc.edu;bcgsc.ca	37	10	24669888	24669888	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KIAA1217	NM_019590	exon3	c.G445C	p.E149Q	TCTTTGGAAGCCA	.	39.0	6.0	44.0	0.0	.	98
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	90189142	90189142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KIF7	NM_198525	exon8	c.G1904A	p.R635Q	AAGGTCCGCCTGG	.	36.0	5.0	48.0	0.0	.	523
KLHL30	377007	broad.mit.edu;bcgsc.ca	37	2	239049561	239049561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLHL30	NM_198582	exon2	c.C166T	p.P56S	AGCAGCCCCTACT	.	66.0	4.0	77.0	0.0	.	22
KLK3	354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51361569	51361569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLK3	NM_001030047	exon3	c.A491G	p.E164G	CAGAGGAGTGTAC	.	40.0	5.0	41.0	0.0	.	228
KLK9	284366	broad.mit.edu;bcgsc.ca	37	19	51507094	51507094	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KLK9	NM_012315	exon4	c.C469T	p.L157L	GAAACAGCGCTGT	.	87.0	6.0	76.0	0.0	.	226
KRT86	3892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52699951	52699951	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	KRT86	NM_002284	exon7	c.C1134A	p.A378A	GAAGGCCAAGCAG	.	139.0	34.0	124.0	1.0	.	91
LINC00521	256369	ucsc.edu;bcgsc.ca	37	14	94469603	94469603	+	RNA	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	.	.	.	.	AGAAGAAGTGCTA	.	32.0	4.0	47.0	0.0	.	.
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40400289	40400289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LRFN2	NM_020737	exon2	c.C564T	p.I188I	CTCGGCGATGTGA	.	76.0	13.0	101.0	0.0	.	93
LY9	4063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160769681	160769681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	LY9	NM_001261457	exon2	c.C263A	p.A88D	CTCTTGCTTTCGC	.	200.0	13.0	113.0	0.0	.	91
MAML2	84441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	96074699	96074699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MAML2	NM_032427	exon1	c.A361G	p.T121A	CTGCTGTTGCTGC	.	154.0	23.0	137.0	1.0	.	850
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129901194	129901194	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MKI67	NM_002417	exon13	c.C8910T	p.P2970P	TCCCACGGGTTCT	.	98.0	26.0	88.0	0.0	.	519
MMGT1	93380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135049612	135049612	+	Missense_Mutation	SNP	T	T	C	rs199809391		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MMGT1	NM_173470	exon3	c.A173G	p.Y58C	ATACCGTAACAGG	.	210.0	102.0	181.0	0.0	.	130
MMGT1	93380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135049605	135049605	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MMGT1	NM_173470	exon3	c.A180C	p.I60I	ATGAACTATACCG	.	220.0	106.0	193.0	0.0	.	130
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47707967	47707993	+	In_Frame_Del	DEL	ATATCATGGAACCAGCAGCAAAGAAGT	ATATCATGGAACCAGCAGCAAAGAAGT	-	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	ATATCATGGAACCAGCAGCAAAGAAGT	ATATCATGGAACCAGCAGCAAAGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	MSH2	NM_000251	exon15	c.2591_2617del	p.864_873del	GATATGATATCAT	.	151.0	18.0	184.0	0.0	.	2445
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50185782	50185782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NCKAP5L	NM_001037806	exon13	c.C3845T	p.T1282M	TGGGGCGTAGGGG	.	65.0	19.0	38.0	0.0	.	68
NELL2	4753	ucsc.edu;bcgsc.ca	37	12	45270410	45270410	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NELL2	NM_001145107	exon1	c.A99G	p.R33R	CGCGTGTCTTGAA	.	42.0	4.0	34.0	0.0	.	517
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	149357349	149357349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NR3C2	NM_001166104	exon2	c.A664T	p.S222C	GAAAACTGCCAAA	.	68.0	13.0	60.0	0.0	.	154
NR4A1	3164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52448249	52448249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NR4A1	NM_001202233	exon3	c.C176T	p.A59V	CCGCTGCCCCCAC	.	56.0	7.0	74.0	0.0	.	186
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	205290713	205290713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	NUAK2	NM_030952	exon1	c.C44T	p.S15L	GCGGCCGAGGGAG	.	81.0	21.0	55.0	0.0	.	391
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53617269	53617269	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	OLFM4	NM_006418	exon4	c.G600A	p.K200K	AGAGAAGCTTGAG	.	119.0	13.0	104.0	0.0	.	69
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99662112	99662112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCDH19	NM_001184880	exon1	c.C1484T	p.S495L	ACCTGCGACGGCA	.	101.0	47.0	94.0	0.0	.	110
PCLO	27445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82595462	82595462	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PCLO	NM_014510	exon4	c.C3642T	p.L1214L	TTCAGGGAGTGGC	.	843.0	325.0	785.0	2.0	.	29
PDE6B	5158	broad.mit.edu;bcgsc.ca	37	4	619437	619437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PDE6B	NM_001145291	exon1	c.G22T	p.A8S	GAGCAGGCCCGGA	.	104.0	9.0	134.0	0.0	.	90
PIK3R4	30849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130447469	130447469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PIK3R4	NM_014602	exon6	c.G1645C	p.E549Q	TATTTTCAGGGTC	.	252.0	29.0	301.0	1.0	.	1471
PLCD4	84812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219501200	219501200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLCD4	NM_032726	exon16	c.G2189A	p.R730H	GTTACCGCCACAT	.	112.0	31.0	117.0	0.0	.	661
PLEKHH1	57475	broad.mit.edu;mdanderson.org	37	14	68038988	68038988	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLEKHH1	NM_020715	exon11	c.G1722A	p.L574L	GGGCCTGGGCGGG	.	11.0	4.0	17.0	0.0	.	22
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129286593	129286593	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PLXND1	NM_015103	exon21	c.G3921T	p.T1307T	CAGCAGCGTCTTC	.	35.0	5.0	64.0	0.0	.	90
PRKAG2	51422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151262925	151262925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRKAG2	NM_016203	exon12	c.A1280G	p.E427G	CCAAGCTCATCCA	.	411.0	150.0	375.0	2.0	.	658
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1564062	1564062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRPF8	NM_006445	exon29	c.G4568T	p.R1523L	CCTGATCGCTGAG	.	128.0	22.0	112.0	0.0	.	525
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120021723	120021723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PRR16	NM_016644	exon3	c.C165A	p.D55E	AACGGACACGCTG	.	97.0	24.0	71.0	0.0	.	71
PZP	5858	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9344850	9344850	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	PZP	NM_002864	exon13	c.C1485A	p.I495I	AGCCATGATCTGA	.	90.0	7.0	77.0	0.0	.	157
RBFOX2	23543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36164375	36164375	+	Missense_Mutation	SNP	C	C	T	rs199852787	alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RBFOX2	NM_001082578	exon6	c.G685A	p.E229K	TATTCTCGAAAGT	.	90.0	8.0	111.0	0.0	C|0.999;G|0.000	90
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237893654	237893654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	RYR2	NM_001035	exon77	c.G10933A	p.A3645T	GATTTAGCAGTAT	.	144.0	17.0	91.0	0.0	.	158
SACS	26278	broad.mit.edu;bcgsc.ca	37	13	23915816	23915816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SACS	NM_014363	exon10	c.T2199C	p.T733T	CAGCTGAGTACAT	.	80.0	5.0	67.0	0.0	.	298
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51173341	51173341	+	Missense_Mutation	SNP	G	G	T	rs140924793	alternate_allele	TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SALL1	NM_002968	exon2	c.C2792A	p.P931Q	TTGGACGGGGACA	.	125.0	5.0	122.0	0.0	G|1.000;A|0.000	98
SLX4	84464	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3634828	3634828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SLX4	NM_032444	exon13	c.A4681G	p.T1561A	TCGGCGTTATGGG	.	80.0	13.0	87.0	0.0	.	94
SNRPB	6628	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2443295	2443295	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SNRPB	NM_003091	exon6	c.C672G	p.P224P	CCCAGGGGGAGGA	.	86.0	10.0	114.0	0.0	.	227
SSH3	54961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67077797	67077797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	SSH3	NM_017857	exon13	c.G1670T	p.S557I	AGACCAGTGACAT	.	74.0	15.0	80.0	0.0	.	91
TAS2R46	259292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11214459	11214459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.T435G	p.F145L	TATCACAAAAAGA	.	275.0	13.0	256.0	0.0	.	1
TAS2R46	259292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11214707	11214707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TAS2R46	NM_176887	exon1	c.G187T	p.V63L	TTAATACTAATAC	.	280.0	20.0	236.0	0.0	.	1
TDRD12	91646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33233749	33233749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001110822	exon4	c.A383G	p.Y128C	GCCTGTACTGCAC	.	209.0	39.0	210.0	0.0	.	.
TRAPPC10	7109	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45506772	45506772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TRAPPC10	NM_003274	exon16	c.A2470T	p.S824C	CAGCTTAGCAATG	.	90.0	13.0	86.0	1.0	.	92
TRAPPC8	22878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29450417	29450417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TRAPPC8	NM_014939	exon16	c.T2306C	p.L769P	AACAAAAGTAGAA	.	278.0	32.0	248.0	1.0	.	159
TTF2	8458	ucsc.edu;bcgsc.ca	37	1	117644071	117644071	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	TTF2	NM_003594	exon23	c.A3414G	p.K1138K	GGCCAAACAAGTT	.	33.0	4.0	24.0	0.0	.	91
UBR5	51366	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	103269936	103269936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	UBR5	NM_015902	exon58	c.C8111T	p.A2704V	TTCTCAGCATTTT	.	150.0	12.0	54.0	0.0	.	761
UGT8	7368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115597188	115597188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	UGT8	NM_003360	exon5	c.C1370T	p.A457V	ATGGAGCCCATCA	.	360.0	98.0	320.0	1.0	.	92
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144107245	144107245	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP38	NM_032557	exon1	c.G642A	p.L214L	ACTACTGCCTTCC	.	126.0	33.0	124.0	0.0	.	660
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6974387	6974387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	USP5	NM_001098536	exon19	c.G2458A	p.V820I	CACTACGTCTGCC	.	131.0	13.0	114.0	0.0	.	659
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44181869	44181869	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	WFDC8	NM_181510	exon5	c.G492A	p.E164E	TGGACACTCCTTA	.	91.0	9.0	108.0	0.0	.	90
WHAMM	123720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83491939	83491939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	.	NM_001080435	exon6	c.A1358G	p.D453G	AGGATGATAAGAA	.	230.0	45.0	295.0	0.0	.	.
WRAP73	49856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3548777	3548777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	WRAP73	NM_017818	exon10	c.G1048A	p.D350N	ACTGACCGTTCCT	.	110.0	18.0	86.0	0.0	.	90
XRCC6	2547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42042966	42042966	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1E9-01A-21D-A152-10	TCGA-DD-A1E9-11A-11D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84a0bc36-9f29-4b23-aee1-bf5ff71f697b	f37fe995-4af3-489f-988e-ca04430e4e57	.	XRCC6	NM_001469	exon7	c.T840A	p.A280A	GAAGGCTCTCAAG	.	153.0	47.0	137.0	0.0	.	661
