Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58862780	58862780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	A1BG	NM_130786	exon5	c.C887T	p.P296L	TCGACCGGCGCGC	.	96.0	27.0	68.0	0.0	.	90
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7787959	7787959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AFAP1	NM_001134647	exon12	c.G1492A	p.A498T	GAAGTGCCGTCCC	.	98.0	19.0	137.0	0.0	.	90
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91671427	91671427	+	Missense_Mutation	SNP	C	C	T	rs149244653	by1000genomes	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AKAP9	NM_005751	exon19	c.C4985T	p.A1662V	TGGAAGCACTAAA	.	40.0	13.0	63.0	0.0	C|0.999;T|0.000	755
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2740124	2740124	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	AMZ1	NM_133463	exon2	c.G39A	p.G13G	CTTCGGGCCCCGG	.	62.0	13.0	55.0	0.0	.	90
ANKFN1	162282	broad.mit.edu;bcgsc.ca	37	17	54535232	54535232	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ANKFN1	NM_153228	exon13	c.T1458C	p.C486C	GTCTTGTATGTGG	.	53.0	4.0	88.0	0.0	.	136
ASIC1	41	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50473752	50473752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001256830	exon6	c.C1221T	p.G407G	CTATGGCAAAGAG	.	324.0	53.0	325.0	0.0	.	.
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	50287714	50287714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ATP9A	NM_006045	exon12	c.C1120T	p.R374C	TGGAGCGAACCAC	.	100.0	7.0	123.0	0.0	.	94
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160242941	160242941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BAZ2B	NM_013450	exon22	c.A3394T	p.M1132L	CACCCATGCTGTC	.	61.0	10.0	98.0	0.0	.	94
BLK	640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11420535	11420535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BLK	NM_001715	exon12	c.G1228A	p.G410R	CACTTCGGGGTCT	.	172.0	32.0	152.0	0.0	.	946
BTBD11	121551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108012091	108012091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	BTBD11	NM_001018072	exon10	c.G2388T	p.R796S	CCTGAGGGAGGCC	.	83.0	12.0	86.0	0.0	.	93
C19orf10	56005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4664897	4664897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	C19orf10	NM_019107	exon3	c.C278A	p.T93N	CAGATGGTGCAGG	.	94.0	13.0	143.0	0.0	.	90
C3orf67	200844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58849427	58849427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	C3orf67	NM_198463	exon12	c.C1075T	p.P359S	ATCGTGGTCTTGA	.	77.0	13.0	94.0	0.0	.	68
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767462	181767462	+	Missense_Mutation	SNP	C	C	G	rs189356042	by1000genomes;alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CACNA1E	NM_001205293	exon48	c.C6434G	p.S2145C	TCCCCTCTGTCTC	.	36.0	9.0	33.0	0.0	C|0.999;T|0.000	95
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7700465	7700465	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CAMTA1	NM_015215	exon7	c.C516T	p.P172P	GAACCCCGACATC	.	130.0	27.0	137.0	0.0	.	520
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31683502	31683502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001257968	exon11	c.C2596A	p.Q866K	GGTCACCAGGAAG	.	75.0	11.0	57.0	0.0	.	.
CCDC15	80071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124861393	124861393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CCDC15	NM_025004	exon9	c.G1945A	p.D649N	ATGACAGATGAGA	.	56.0	5.0	70.0	0.0	.	69
CD37	951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49841271	49841271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CD37	NM_001774	exon5	c.C432G	p.D144E	CTGGGACTATGTG	.	194.0	62.0	180.0	0.0	.	90
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61978125	61978125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CHRNA4	NM_000744	exon6	c.C1849T	p.L617F	GGAAGAGGCCCAC	.	130.0	23.0	130.0	0.0	.	91
CISD1	55847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	60037077	60037077	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CISD1	NM_018464	exon2	c.A232T	p.K78X	AGGTCCAAAAAGG	.	181.0	28.0	217.0	0.0	.	90
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227906897	227906897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	COL4A4	NM_000092	exon37	c.G3472T	p.D1158Y	CTGGATCCCCCTG	.	45.0	7.0	56.0	0.0	.	142
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107681209	107681209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	COL4A6	NM_001847	exon2	c.T29A	p.L10Q	GTAACCAGGAGCA	.	226.0	64.0	268.0	0.0	.	199
CPNE1	8904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34220601	34220601	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	CPNE1	NM_003915	exon3	c.G162T	p.R54R	CCGCACCCGTTCA	.	125.0	10.0	186.0	0.0	.	91
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59821978	59821978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DAAM1	NM_014992	exon20	c.C2482G	p.Q828E	AAAGGTCAAAGAG	.	63.0	12.0	109.0	0.0	.	227
DGAT2	84649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509440	75509440	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DGAT2	NM_032564	exon7	c.G978T	p.G326G	CTGGGGGCTGGTG	.	60.0	12.0	90.0	1.0	.	226
DHRS7	51635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	60631900	60631900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DHRS7	NM_016029	exon1	c.G128A	p.R43H	CCTGGGCGTCGTC	.	220.0	27.0	219.0	0.0	.	91
DNAH17	8632	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76482177	76482177	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DNAH17	NM_173628	exon46	c.C7140A	p.I2380I	TTCGTTGATCCAC	.	43.0	5.0	82.0	0.0	.	142
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74745708	74745708	+	Silent	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DQX1	NM_133637	exon12	c.A2019T	p.P673P	GAAGTATGGAGGG	.	139.0	24.0	147.0	0.0	.	92
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1277480	1277480	+	Missense_Mutation	SNP	A	A	G	rs147424815		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	DVL1	NM_004421	exon4	c.T419C	p.M140T	CTGACCATGGACT	.	150.0	27.0	153.0	0.0	A|1.000;G|0.000	658
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143096483	143096483	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	EPHA1	NM_005232	exon5	c.A859T	p.M287L	TGTCCATCCGGTA	.	144.0	44.0	144.0	0.0	.	1436
FAM160A1	729830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152507926	152507926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001109977	exon6	c.T866C	p.L289P	ACTCCCTGGAGTT	.	82.0	11.0	103.0	0.0	.	.
FAM227B	196951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49620847	49620850	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_152647	exon16	c.1442_1445del	p.481_482del	ACACATTCTCTCT	.	67.0	10.0	75.0	0.0	.	.
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13612210	13612210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FBLN2	NM_001998	exon2	c.C355T	p.P119S	CTGCCGCCCAACT	.	108.0	21.0	75.0	0.0	.	91
FCRLB	127943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161697408	161697408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FCRLB	NM_001002901	exon6	c.G1237A	p.A413T	CACTTTGCTGTGA	.	123.0	8.0	115.0	0.0	.	22
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27941376	27941376	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FGR	NM_001042729	exon10	c.G1080T	p.V360V	CATGTCCACCAAT	.	147.0	19.0	204.0	0.0	.	547
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	42911627	42911627	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FNTA	NM_002027	exon1	c.C138T	p.A46A	GGAAGCCGTGGCG	.	52.0	14.0	33.0	0.0	.	91
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186673299	186673299	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FSIP2	NM_173651	exon17	c.C19533T	p.V6511V	GGTTGTCGATTCC	.	98.0	16.0	127.0	0.0	.	90
FYN	2534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112035597	112035597	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	FYN	NM_153047	exon2	c.T297C	p.D99D	CAGGTCATCTTCT	.	40.0	5.0	60.0	0.0	.	1000
GABBR1	2550	broad.mit.edu;bcgsc.ca	37	6	29580368	29580368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GABBR1	NM_001470	exon13	c.C1590A	p.S530R	AGAGCCGCTGGCA	.	60.0	6.0	46.0	0.0	.	521
GIGYF1	64599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100284048	100284048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GIGYF1	NM_022574	exon8	c.C703A	p.P235T	AGCGGGGACCACC	.	60.0	5.0	50.0	0.0	.	136
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121554929	121554929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GLI2	NM_005270	exon1	c.G33T	p.E11D	CTCCGAGAAGCAA	.	68.0	15.0	73.0	0.0	.	954
GLT8D2	83468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104388181	104388181	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GLT8D2	NM_031302	exon9	c.C699G	p.A233A	CATGTTGGCAACA	.	130.0	18.0	132.0	0.0	.	92
GPR144	347088	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127232800	127232800	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001161808	exon17	c.G2586T	p.L862L	GGTCCTGCTGCCC	.	205.0	34.0	120.0	1.0	.	.
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123489506	123489506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRAMD1B	NM_020716	exon18	c.A2007T	p.E669D	CCAAGAAAGGTAA	.	98.0	16.0	102.0	0.0	.	69
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19079942	19079942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001142966	exon22	c.G3644A	p.G1215E	GGCCGGGACAGCC	.	54.0	11.0	60.0	0.0	.	.
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10095217	10095217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GRHL1	NM_198182	exon2	c.A194G	p.Y65C	TGCTCTATGACTA	.	110.0	16.0	132.0	0.0	.	92
GUF1	60558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44682735	44682735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	GUF1	NM_021927	exon3	c.A302G	p.N101S	AGAATAATAAGCA	.	92.0	20.0	137.0	2.0	.	91
H1F0	3005	hgsc.bcm.edu;broad.mit.edu	37	22	38201683	38201684	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	H1F0	NM_005318	exon1	c.132_133insT	p.G44fs	CGCTGGCTCCTCG	.	110.0	10.0	176.0	0.0	.	90
HOXA3	3200	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	27148273	27148273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HOXA3	NM_030661	exon3	c.A593G	p.Y198C	CTCGTGTAGGCCG	.	55.0	8.0	39.0	0.0	.	153
HOXD9	3235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176988265	176988265	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HOXD9	NM_014213	exon1	c.G769C	p.E257Q	CTGAAGGAGGAGG	.	70.0	12.0	91.0	0.0	.	90
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53655712	53655712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	HUWE1	NM_031407	exon14	c.G1105A	p.A369T	TCATGGCCTGGAT	.	97.0	31.0	93.0	1.0	.	280
IPP	3652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46165836	46165836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	IPP	NM_001145349	exon9	c.G1557T	p.M519I	CACTTTCATTGAG	.	34.0	6.0	38.0	0.0	.	91
ITGAV	3685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187465066	187465066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITGAV	NM_001144999	exon1	c.T5C	p.L2P	AAATGCTCCTAGG	.	49.0	7.0	71.0	0.0	.	653
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52864633	52864633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ITIH4	NM_001166449	exon1	c.C26T	p.T9I	CTGCAGGTACGGA	.	134.0	28.0	142.0	1.0	.	46
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17943612	17943612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	JAK3	NM_000215	exon18	c.C2477T	p.S826L	AGCTGTGAGATGT	.	198.0	35.0	263.0	0.0	.	2418
KLHL2	11275	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	166149976	166149976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	KLHL2	NM_001161521	exon3	c.A182T	p.D61V	TGTGCGATGTCAC	.	273.0	27.0	372.0	0.0	.	226
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112435307	112435307	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LAMA4	NM_001105206	exon38	c.G5298C	p.R1766S	AGGCTCCCTGTGA	.	54.0	8.0	55.0	0.0	.	140
LMAN2L	81562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97405772	97405772	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LMAN2L	NM_030805	exon1	c.G6A	p.A2A	AGTCGCCGCCATC	.	37.0	9.0	22.0	0.0	.	90
LRRC69	100130742	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92114903	92114903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001129890	exon1	c.T14C	p.L5S	AGAGATTGTTAAT	.	58.0	9.0	48.0	0.0	.	.
LTF	4057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46492064	46492064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LTF	NM_002343	exon7	c.G803T	p.R268L	GGGACCCGGGCCA	.	150.0	25.0	178.0	0.0	.	703
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235973623	235973623	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	LYST	NM_000081	exon5	c.C495A	p.T165T	ATCTGAGGTGGAG	.	92.0	20.0	83.0	0.0	.	143
MFAP2	4237	hgsc.bcm.edu;bcgsc.ca	37	1	17301519	17301519	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MFAP2	NM_001135248	exon10	c.446-1G>C	.	GGTCAGCTATTGG	.	114.0	19.0	125.0	0.0	.	514
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24705233	24705233	+	Silent	SNP	C	C	T	rs201576683		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	MPP6	NM_016447	exon8	c.C810T	p.S270S	AGGAAGCGCTGGT	.	88.0	27.0	99.0	0.0	C|0.999;T|0.000	90
MPPED1	758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43870736	43870736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001044370	exon4	c.T527A	p.L176Q	CGAAGCTGAAGCC	.	172.0	31.0	222.0	2.0	.	.
MROH1	727957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145234383	145234383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001099280	exon5	c.T194G	p.V65G	CAGCGGTCCTGAG	.	245.0	62.0	243.0	1.0	.	.
NAALADL1	10004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64820704	64820704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NAALADL1	NM_005468	exon8	c.C1184T	p.T395I	AGCAGGGTCCCCA	.	206.0	31.0	191.0	0.0	.	90
NCLN	56926	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	3206308	3206308	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NCLN	NM_020170	exon12	c.C1384T	p.Q462X	ACCAACCAGCCGC	.	109.0	27.0	105.0	0.0	.	90
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57060281	57060281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	NLRC5	NM_032206	exon5	c.T1426A	p.Y476N	ATCTTCTATGCAA	.	66.0	15.0	94.0	0.0	.	159
OR10J5	127385	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159504893	159504893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR10J5	NM_001004469	exon1	c.G905C	p.R302T	ACAACTCTGCATA	.	52.0	7.0	46.0	0.0	.	71
OR2A2	442361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	143807041	143807041	+	Nonsense_Mutation	SNP	T	T	A	rs201869620	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR2A2	NM_001005480	exon1	c.T366A	p.Y122X	TAGGTATGTGGCC	.	159.0	21.0	143.0	0.0	T|0.999;C|0.001	92
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661048	4661048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR51D1	NM_001004751	exon1	c.A28G	p.I10V	GTCCCTATCATAG	.	50.0	8.0	79.0	0.0	.	68
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4903313	4903313	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR51T1	NM_001004759	exon1	c.T265A	p.Y89N	CCCATGTATTATT	.	79.0	16.0	97.0	0.0	.	115
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97868812	97868812	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OR5H14	NM_001005514	exon1	c.A583T	p.N195Y	TCTATTAACTTTC	.	52.0	15.0	62.0	0.0	.	91
OTUB1	55611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63755856	63755856	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	OTUB1	NM_017670	exon2	c.C106A	p.R36R	CAGGACCGAATTC	.	82.0	13.0	113.0	1.0	.	501
PALB2	79728	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23646654	23646654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PALB2	NM_024675	exon4	c.C1213A	p.P405T	CTGCAGGAAACAG	.	25.0	5.0	36.0	0.0	.	1351
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182464	140182464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PCDHA3	NM_031497	exon1	c.A1682G	p.N561S	ACGACAACGCGCC	.	133.0	14.0	41.0	0.0	.	98
PDLIM3	27295	broad.mit.edu;bcgsc.ca	37	4	186446243	186446247	+	Frame_Shift_Del	DEL	GACTC	GACTC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	GACTC	GACTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PDLIM3	NM_001257962	exon2	c.172_176del	p.58_59del	GTCATGGACTCTG	.	73.0	8.0	108.0	0.0	.	92
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58322830	58322830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PHACTR3	NM_080672	exon3	c.G298T	p.A100S	AAGATGGCCGGCA	.	103.0	15.0	183.0	0.0	.	93
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114380848	114380848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PTPN22	NM_015967	exon13	c.G1174A	p.D392N	TTGTGTCAGCATT	.	52.0	8.0	53.0	0.0	.	227
PYGB	5834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25261588	25261588	+	Missense_Mutation	SNP	G	G	A	rs201813153		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	PYGB	NM_002862	exon11	c.G1243A	p.V415M	CAGCACGTGGCCG	.	169.0	24.0	173.0	0.0	.	91
RAB3IP	117177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70206599	70206599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RAB3IP	NM_175623	exon9	c.G1220A	p.R407K	AACACAGAATTAA	.	75.0	13.0	116.0	0.0	.	227
RGPD3	653489	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	107041399	107041399	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RGPD3	NM_001144013	exon20	c.C3024T	p.Y1008Y	TTTACCGTATTGT	.	95.0	11.0	105.0	1.0	.	23
RSPH1	89765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43896039	43896039	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RSPH1	NM_080860	exon8	c.C846T	p.D282D	CTCCTGGTCATAC	.	104.0	24.0	114.0	0.0	.	227
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39071081	39071081	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RYR1	NM_000540	exon101	c.C14583T	p.R4861R	CTTCCGCAAGTTC	.	264.0	46.0	246.0	0.0	.	100
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237778097	237778097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	RYR2	NM_001035	exon37	c.A5669C	p.K1890T	GGCCCAAGGAAGG	.	156.0	30.0	185.0	0.0	.	158
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4285345	4285345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SDK1	NM_152744	exon44	c.T6289C	p.S2097P	CACTACTCAGACG	.	140.0	17.0	157.0	0.0	.	138
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18505223	18505223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SEC23B	NM_032985	exon5	c.G513C	p.R171S	TGGAAGGATGGTG	.	99.0	17.0	153.0	0.0	.	91
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7187403	7187403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC2A4	NM_001042	exon5	c.G559T	p.A187S	CTGATCGCCCAGG	.	58.0	10.0	86.0	0.0	.	90
SLC39A14	23516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22273745	22273745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SLC39A14	NM_001135153	exon7	c.A1099G	p.I367V	CAAGGCATCAGCA	.	147.0	23.0	140.0	0.0	.	90
SMG1	23049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	18853630	18853630	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SMG1	NM_015092	exon40	c.T6366C	p.H2122H	CACACTATGGATT	.	87.0	26.0	115.0	1.0	.	1160
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49919817	49919817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPATS2	NM_023071	exon14	c.A1417G	p.M473V	GACAGTATGGGTC	.	231.0	49.0	309.0	0.0	.	135
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35704679	35704679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	SPEF2	NM_024867	exon17	c.G2422A	p.A808T	AAAACTGCTCACG	.	40.0	7.0	63.0	0.0	.	26
THAP7	80764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21354333	21354333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	THAP7	NM_030573	exon4	c.C766T	p.R256C	GCTGGCGCTGGGC	.	122.0	23.0	92.0	0.0	.	278
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93558647	93558647	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TNKS2	NM_025235	exon1	c.199+1G>T	.	CCGCAGGTAACCG	.	75.0	12.0	67.0	0.0	.	541
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7576633	7576633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TP53	NM_001126114	exon10	c.A1018G	p.N340D	AACAATTTTCTTT	.	42.0	16.0	109.0	0.0	.	70225
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	231344856	231344857	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TRIM67	NM_001004342	exon8	c.1983_1984insA	p.D661fs	GTACGACAACCAC	.	274.0	84.0	246.0	0.0	.	229
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122853884	122853884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TRPC3	NM_001130698	exon2	c.G529A	p.D177N	GGGCGTCGCCAAT	.	132.0	28.0	152.0	0.0	.	92
TSC2	7249	hgsc.bcm.edu;bcgsc.ca	37	16	2136306	2136311	+	In_Frame_Del	DEL	TGTACC	TGTACC	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	TGTACC	TGTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TSC2	NM_000548	exon37	c.4775_4780del	p.1592_1594del	ACAAGGTGTACCT	.	158.0	20.0	241.0	0.0	.	1908
TTC24	164118	bcgsc.ca;mdanderson.org	37	1	156551495	156551495	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TTC24	NM_001105669	exon2	c.C339T	p.G113G	ACAGGGCAGGCGA	.	172.0	18.0	182.0	1.0	.	46
TTC28	23331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28494971	28494971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	.	NM_001145418	exon10	c.A3479G	p.Y1160C	AGTTTGTAGTCCG	.	245.0	25.0	204.0	0.0	.	.
TUBA3D	113457	ucsc.edu;bcgsc.ca	37	2	132238309	132238309	+	Missense_Mutation	SNP	C	C	A	rs200206202	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBA3D	NM_080386	exon4	c.C1043A	p.P348Q	GGTGCCCGACTGG	.	132.0	18.0	164.0	2.0	C|0.999;T|0.000	44
TUBE1	51175	hgsc.bcm.edu;bcgsc.ca	37	6	112408489	112408489	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBE1	NM_016262	exon2	c.A46T	p.I16F	AGCCGATCTGGTT	.	280.0	31.0	336.0	0.0	.	91
TUBE1	51175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112408473	112408484	+	In_Frame_Del	DEL	CAGAAGCAGCAG	CAGAAGCAGCAG	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	CAGAAGCAGCAG	CAGAAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	TUBE1	NM_016262	exon2	c.51_62del	p.17_21del	AGGTCCCAGAAGC	.	261.0	22.0	307.0	0.0	.	91
USP16	10600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30419571	30419571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	USP16	NM_006447	exon14	c.G1940T	p.R647L	AACTTCGAGATGC	.	68.0	9.0	106.0	1.0	.	659
WDR49	151790	broad.mit.edu;bcgsc.ca	37	3	167272493	167272493	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	WDR49	NM_178824	exon6	c.745delA	p.I249fs	CCAGTATTTTCTT	.	24.0	9.0	40.0	0.0	.	155
ZFAT	57623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	135613836	135613836	+	Missense_Mutation	SNP	C	C	A	rs201041569	alternate_allele	TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFAT	NM_020863	exon6	c.G2126T	p.R709L	CCTGACCGGTGCT	.	183.0	33.0	162.0	1.0	C|0.999;T|0.001	90
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77767616	77767616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFHX4	NM_024721	exon10	c.A8459C	p.N2820T	AGGGAAACACTGA	.	43.0	11.0	82.0	0.0	.	98
ZFPM2	23414	broad.mit.edu;ucsc.edu	37	8	106813669	106813669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NQ-01A-21D-A28X-10	TCGA-DD-A4NQ-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c2df6b36-605d-46f7-8c66-d9625766c023	7985bd29-3002-4677-91fc-3754d1e3f0a4	.	ZFPM2	NM_012082	exon8	c.A1359T	p.R453S	CCAGAGACCAGAG	.	39.0	4.0	44.0	0.0	.	139
