Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AADACL3	126767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12785194	12785194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AADACL3	NM_001103170	exon4	c.G284A	p.R95H	GTTACCGCAAGTT	.	136.0	36.0	114.0	0.0	.	22
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109677646	109677646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ACACB	NM_001093	exon34	c.C4674A	p.F1558L	CTCCTTCGAATAC	.	66.0	12.0	50.0	0.0	.	98
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41895734	41895734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ACO2	NM_001098	exon2	c.C41G	p.A14G	AGAAAGCTCTGGG	.	27.0	10.0	19.0	0.0	.	290
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50339757	50339757	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ADCY7	NM_001114	exon13	c.C1749T	p.R583R	TGAGCGCGAGGTG	.	113.0	41.0	106.0	0.0	.	91
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73799982	73799982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ALMS1	NM_015120	exon16	c.G10975A	p.V3659M	CGAAGTGTGAAGG	.	150.0	37.0	98.0	0.0	.	142
ATP4A	495	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36050844	36050844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ATP4A	NM_000704	exon7	c.G919A	p.A307T	GGCCCGCGATGAT	.	185.0	53.0	183.0	1.0	.	91
AUP1	550	broad.mit.edu;bcgsc.ca	37	2	74754660	74754660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	AUP1	NM_181575	exon9	c.T899A	p.L300Q	TGAGCCAGAGTTG	.	85.0	5.0	62.0	0.0	.	90
C3orf72	401089	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138669208	138669208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C3orf72	NM_001040061	exon3	c.G322A	p.A108T	GGCAGCGCTTCGC	.	76.0	26.0	51.0	0.0	.	22
C7orf43	55262	hgsc.bcm.edu;broad.mit.edu	37	7	99754128	99754128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	C7orf43	NM_018275	exon8	c.C1121A	p.A374D	CAAGAAGCGGTCA	.	118.0	5.0	81.0	0.0	.	90
CAMK2N1	55450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	20811831	20811831	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CAMK2N1	NM_018584	exon1	c.C42A	p.P14P	GCCGTAGGGGCTC	.	43.0	14.0	42.0	0.0	.	93
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7723459	7723459	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CAMTA1	NM_015215	exon9	c.C852T	p.R284R	ACACCGCATCATC	.	135.0	44.0	126.0	0.0	.	520
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37893159	37893159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CARD10	NM_014550	exon12	c.G1814A	p.R605Q	GGGCTCCGGCCAG	.	149.0	80.0	84.0	0.0	.	662
CCDC79	283847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66822199	66822199	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001136505	exon6	c.T273G	p.V91V	ACAGTAAACTGAA	.	461.0	147.0	364.0	1.0	.	.
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138289885	138289885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CEP70	NM_024491	exon5	c.A275G	p.Q92R	AGCTGTTGATTAG	.	210.0	59.0	182.0	0.0	.	69
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61981053	61981053	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CHRNA4	NM_000744	exon5	c.C1710T	p.G570G	CTGGACGCCCTCC	.	127.0	61.0	82.0	0.0	.	91
COL4A6	1288	ucsc.edu;bcgsc.ca	37	X	107402853	107402853	+	Missense_Mutation	SNP	G	G	T	rs201417622	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	COL4A6	NM_001847	exon44	c.C4654A	p.P1552T	TCATGGGGATAGG	.	257.0	106.0	202.0	2.0	G|0.999;C|0.001	199
CROT	54677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86986879	86986879	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CROT	NM_001143935	exon4	c.T172C	p.L58L	GGGTTCTTGGATC	.	32.0	9.0	28.0	0.0	.	280
CXorf36	79742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	45011086	45011086	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CXorf36	NM_176819	exon5	c.G1113A	p.Q371Q	CCTCCCCTGGAGA	.	149.0	53.0	153.0	0.0	.	130
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40498275	40498275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	CXorf38	NM_144970	exon3	c.A457C	p.K153Q	CTTTCTTTCGATC	.	109.0	39.0	86.0	0.0	.	131
DCC	1630	broad.mit.edu;bcgsc.ca	37	18	50278659	50278659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DCC	NM_005215	exon2	c.G327T	p.K109N	CCACAAGCCAGAT	.	190.0	8.0	126.0	1.0	.	225
DMXL2	23312	broad.mit.edu;bcgsc.ca	37	15	51757753	51757761	+	Splice_Site	DEL	CCAAACTCA	CCAAACTCA	-	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	CCAAACTCA	CCAAACTCA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DMXL2	.	.	.	.	TAAATTCCAAACT	.	207.0	32.0	204.0	0.0	.	99
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65116351	65116351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	DPF2	NM_006268	exon10	c.C1048G	p.R350G	TGCGATCGTGGCT	.	158.0	9.0	139.0	0.0	.	91
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158158157	158158157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EBF1	NM_024007	exon11	c.G1045C	p.E349Q	TGGGTTCGTTGAG	.	84.0	30.0	53.0	0.0	.	92
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65301374	65301374	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	EYS	NM_001142800	exon26	c.T4386C	p.S1462S	CCCCCTAGAGACA	.	79.0	22.0	79.0	0.0	.	660
F10	2159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113795287	113795287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	F10	NM_000504	exon5	c.A425T	p.E142V	GCCACGAGGAACA	.	117.0	27.0	91.0	0.0	.	227
FAM135B	51059	broad.mit.edu;bcgsc.ca	37	8	139164944	139164944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM135B	NM_015912	exon13	c.C1774A	p.L592I	TGCTTAGCCCAGT	.	72.0	6.0	70.0	0.0	.	31
FAM46D	169966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79698375	79698375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FAM46D	NM_001170574	exon5	c.C337T	p.P113S	TTTTTACCAAAAG	.	158.0	52.0	154.0	0.0	.	130
FCGRT	2217	broad.mit.edu;ucsc.edu	37	19	50017250	50017250	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FCGRT	NM_001136019	exon3	c.A185T	p.N62I	GCTACAATAGCCT	.	71.0	4.0	72.0	0.0	.	91
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76124503	76124503	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FILIP1	NM_015687	exon2	c.T186A	p.S62S	TTCTCCAGATGTT	.	244.0	67.0	219.0	0.0	.	94
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79229242	79229242	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	FRAS1	NM_001166133	exon15	c.T1557C	p.G519G	TGCAGGTTGCTGG	.	130.0	40.0	124.0	2.0	.	68
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48428812	48428812	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GDF10	NM_004962	exon2	c.C1074T	p.D358D	CTTCTCGTCAAAG	.	160.0	49.0	122.0	0.0	.	650
GET4	51608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	930603	930603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GET4	NM_015949	exon5	c.T505G	p.S169A	CTGCACTCAGCGG	.	186.0	56.0	148.0	0.0	.	90
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380859	147380859	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GJA8	NM_005267	exon2	c.C777T	p.S259S	CTCCTCCATCCAG	.	110.0	39.0	72.0	0.0	.	138
GPR101	83550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	136113472	136113472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	GPR101	NM_054021	exon1	c.C362A	p.T121N	ACAATGGTGTTGA	.	73.0	36.0	39.0	0.0	.	134
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	X	53577955	53577955	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	HUWE1	NM_031407	exon65	c.C9292A	p.R3098R	GCTCTCGTCTCAG	.	131.0	6.0	136.0	0.0	.	280
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65622666	65622666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IGDCC3	NM_004884	exon11	c.G1823A	p.R608H	ACAAAGCGGACTG	.	107.0	40.0	97.0	0.0	.	93
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41388013	41388013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	INO80	NM_017553	exon3	c.G257T	p.G86V	CCTGCTCCAGAAG	.	101.0	33.0	93.0	0.0	.	72
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3599546	3599546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	IRX1	NM_024337	exon2	c.A484G	p.M162V	AAGATCATGCTGG	.	117.0	43.0	123.0	0.0	.	228
ITPR1	3708	broad.mit.edu;bcgsc.ca	37	3	4681100	4681100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ITPR1	NM_001099952	exon6	c.G312T	p.E104D	GAATGAGACAGAA	.	135.0	8.0	108.0	0.0	.	710
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	44278585	44278585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KCNN4	NM_002250	exon3	c.G442C	p.G148R	CTTCCCCTTGGCC	.	47.0	18.0	62.0	0.0	.	92
KRTAP13-2	337959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31744148	31744148	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	KRTAP13-2	NM_181621	exon1	c.A384G	p.R128R	CAGGGATCTGACA	.	91.0	31.0	86.0	0.0	.	90
LMNB2	84823	ucsc.edu;bcgsc.ca	37	19	2431870	2431870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LMNB2	NM_032737	exon10	c.A1621G	p.S541G	GGGGGCTGTGGGC	.	44.0	4.0	32.0	0.0	.	290
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	96350727	96350727	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	LNPEP	NM_005575	exon13	c.C2304T	p.A768A	CGAAGCCCTGTTT	.	152.0	13.0	114.0	0.0	.	229
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39481600	39481600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MAP4K3	NM_003618	exon32	c.A2532T	p.R844S	ATTAGATCTAAAA	.	88.0	33.0	90.0	0.0	.	550
MC3R	4159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	54824818	54824818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	MC3R,NS,carcinoma,0	MC3R	NM_019888	exon1	c.C919T	p.R307C	GAATTGCGCAACA	.	203.0	53.0	131.0	0.0	.	660
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	42028493	42028493	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MGA	NM_001080541	exon13	c.G4031A	p.W1344X	GCAACTGGGAGGA	.	96.0	33.0	83.0	0.0	.	522
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4789860	4789860	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MINK1	NM_170663	exon10	c.G888A	p.R296R	GGAGCGGCAGGTC	.	65.0	20.0	55.0	0.0	.	943
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9074914	9074914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MUC16	NM_024690	exon3	c.T12532C	p.S4178P	CTTGTGATGTCAA	.	181.0	64.0	128.0	0.0	.	566
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1926429	1926429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	MYT1L	NM_015025	exon10	c.C1112T	p.T371M	TCCGGCGTCCTTC	.	98.0	35.0	84.0	0.0	.	95
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115773896	115773896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NDST4	NM_022569	exon8	c.G1801C	p.G601R	GTGGACCAATTAC	.	133.0	40.0	132.0	0.0	.	94
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56369797	56369797	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	NLRP4	NM_134444	exon3	c.C1038T	p.I346I	CTGGATCCTGTGT	.	74.0	32.0	49.0	0.0	.	216
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978151	247978151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	OR14A16	NM_001001966	exon1	c.T881C	p.I294T	ACCTTTATGGCCT	.	150.0	31.0	139.0	0.0	.	46
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140255085	140255085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_018903	exon1	c.G28C	p.G10R	GGCCCGGGATCCC	.	92.0	33.0	49.0	0.0	.	.
PHAX	51808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	125944167	125944167	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PHAX	NM_032177	exon3	c.C822A	p.L274L	TGGTCTCTTTATA	.	79.0	20.0	56.0	0.0	.	90
PIGB	9488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	55647553	55647553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PIGB	NM_004855	exon12	c.G1588A	p.E530K	TTGCCAGAGGGTC	.	181.0	13.0	147.0	0.0	.	226
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	204394000	204394000	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PIK3C2B	NM_002646	exon34	c.C4885T	p.R1629X	GACTTCGAGATCC	.	117.0	50.0	106.0	0.0	.	1310
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48602999	48602999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLA2G4C	NM_001159322	exon5	c.G406C	p.A136P	TCGCTGCTTGGAT	.	96.0	27.0	92.0	0.0	.	92
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160840493	160840493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PLA2R1	NM_001195641	exon13	c.C2129A	p.A710D	ATATGGGCAAAGC	.	205.0	69.0	195.0	0.0	.	93
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	128428642	128428642	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001159542	exon1	c.G531A	p.K177K	TGGGAAGGTGTTC	.	71.0	21.0	60.0	0.0	.	.
PRKG1	5592	broad.mit.edu;bcgsc.ca	37	10	52751168	52751168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRKG1	NM_001098512	exon1	c.G30C	p.K10N	TGCCAAGATTCTC	.	237.0	10.0	180.0	1.0	.	523
PRPF4	9128	broad.mit.edu;bcgsc.ca	37	9	116045492	116045492	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRPF4	NM_004697	exon5	c.563+1G>T	.	GCCCAGGTAAAGA	.	131.0	7.0	141.0	0.0	.	93
PRRT1	80863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32117487	32117487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PRRT1	NM_030651	exon3	c.G571A	p.G191R	GGGTCCCGCCTGC	.	33.0	12.0	28.0	0.0	.	153
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87701601	87701601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PTPN13	NM_080685	exon36	c.G5953A	p.A1985T	GTTTCAGCTCCAA	.	84.0	34.0	74.0	0.0	.	230
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71003577	71003577	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	PTPRB	NM_001206972	exon1	c.C18T	p.A6A	CAACCCGGCTCCA	.	93.0	27.0	74.0	0.0	.	226
RANBP3L	202151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36253830	36253830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RANBP3L	NM_001161429	exon13	c.G1161T	p.K387N	TTGAATCTTCATT	.	137.0	37.0	109.0	0.0	.	91
RPE65	6121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68897225	68897225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPE65	NM_000329	exon11	c.C1172T	p.A391V	GCAGTGGCAGTTG	.	89.0	29.0	80.0	0.0	.	91
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113303242	113303242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	RPH3A	NM_001143854	exon6	c.A254T	p.N85I	TAGAAAACATGAG	.	88.0	18.0	90.0	0.0	.	519
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12610490	12610490	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SCIN	NM_001112706	exon1	c.G78A	p.K26K	TGAGAAGCTGGAG	.	69.0	15.0	87.0	0.0	.	24
SEMA7A	8482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74703983	74703983	+	Silent	SNP	G	G	A	rs150179930	byfrequency	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SEMA7A	NM_003612	exon12	c.C1491T	p.G497G	GCCCCCGCCATAG	.	72.0	21.0	28.0	0.0	G|0.994;A|0.006	153
SLC12A1	6557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48500235	48500235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC12A1	NM_001184832	exon2	c.G319A	p.D107N	ACCATGGATGCCG	.	99.0	37.0	91.0	1.0	.	24
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128364118	128364118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC27A6	NM_001017372	exon8	c.A1535T	p.Y512F	ACGTCTATGGTGT	.	70.0	17.0	67.0	0.0	.	90
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44197695	44197695	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC29A1	NM_004955	exon5	c.G366T	p.V122V	GCTGGTGTTTCTG	.	68.0	23.0	57.0	0.0	.	154
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24920370	24920370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLC5A11	NM_052944	exon14	c.A1603C	p.T535P	CTCATCACTGTCT	.	109.0	10.0	102.0	0.0	.	92
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454719	84454719	+	Silent	SNP	A	A	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLITRK1	NM_052910	exon1	c.T924A	p.G308G	CTTTGTACCTCCG	.	83.0	42.0	125.0	0.0	.	94
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59192012	59192012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SLTM	NM_024755	exon7	c.T714C	p.A238A	ATCCTCAGCTTCT	.	124.0	43.0	106.0	0.0	.	91
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	8784213	8784213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_015210	exon6	c.G1103A	p.R368H	TCCAGCGCTGCGA	.	58.0	14.0	34.0	0.0	.	.
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21521737	21521737	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SP4	NM_003112	exon5	c.T2103C	p.H701H	AACCCATACAGGT	.	156.0	53.0	135.0	0.0	.	95
SPATA31A6	389730	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	43625397	43625397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	NM_001145196	exon4	c.G3290A	p.R1097K	ATTGGCCTTTGGC	.	251.0	70.0	216.0	1.0	.	.
SPCS2	9789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74660392	74660392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	SPCS2	NM_014752	exon1	c.G62A	p.G21D	GGGCTGGTGGTGC	.	66.0	25.0	43.0	0.0	.	113
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53084937	53084937	+	Missense_Mutation	SNP	C	C	A	rs147121734	alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ST18	NM_014682	exon10	c.G484T	p.D162Y	CTTCATCGCTCTC	.	150.0	42.0	117.0	0.0	C|0.999;T|0.000	95
TBXAS1	6916	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	139653169	139653169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TBXAS1	NM_001166253	exon7	c.G594T	p.M198I	TCAGATGGTTCCC	.	52.0	5.0	47.0	0.0	.	155
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115985937	115985937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TDRD1	NM_198795	exon22	c.T3137C	p.L1046P	GCCACCTGGCGCT	.	100.0	38.0	87.0	0.0	.	90
TKTL1	8277	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153556013	153556013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TKTL1	NM_012253	exon11	c.C1478T	p.A493V	CAGCTGCTGATGA	.	214.0	62.0	205.0	1.0	.	134
TM9SF3	56889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98325145	98325145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TM9SF3	NM_020123	exon3	c.G337T	p.D113Y	CTTTATCTAAATC	.	90.0	26.0	61.0	0.0	.	90
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10971325	10971325	+	Missense_Mutation	SNP	G	G	T	rs139096194	byfrequency;alternate_allele	TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	TPTE	NM_199259	exon5	c.C32A	p.A11E	ACTCCCGCCAGGT	.	101.0	21.0	51.0	0.0	G|1.000;A|0.000	344
TRIL	9865	broad.mit.edu;mdanderson.org	37	7	28995704	28995704	+	RNA	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	.	.	.	.	.	GGTGTCCCCGCGC	.	15.0	4.0	11.0	0.0	.	.
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210696272	210696272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	UNC80	NM_032504	exon16	c.G2732T	p.R911L	TCACACGCTGCGC	.	209.0	67.0	181.0	0.0	.	90
USP1	7398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62916161	62916161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	USP1	NM_001017415	exon9	c.A1867C	p.K623Q	ATAGGTAAGCCAG	.	113.0	38.0	114.0	0.0	.	659
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138761070	138761070	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZC3HAV1	NM_024625	exon6	c.G1659A	p.E553E	GATCGTCTCCATG	.	95.0	34.0	90.0	0.0	.	91
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131515868	131515868	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZER1	NM_006336	exon4	c.G321A	p.E107E	GTACAGCTCCACC	.	36.0	10.0	40.0	0.0	.	91
ZFYVE27	118813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99498236	99498236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZFYVE27	NM_001002261	exon1	c.T2C	p.M1T	ACAGGATGCAGAC	.	42.0	18.0	43.0	0.0	.	91
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189778	38189778	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73F-01A-11D-A32G-10	TCGA-DD-A73F-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	26191956-5876-4a9c-94ba-68e53766fb9b	58d96a98-3030-4b89-b405-adb2c0cd8f7a	.	ZNF607	NM_032689	exon5	c.G1254A	p.E418E	GGGTTTCTCACCG	.	70.0	26.0	67.0	0.0	.	90
