Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA2	20	ucsc.edu;bcgsc.ca	37	9	139911383	139911383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA2	NM_212533	exon19	c.C2837T	p.A946V	TGCACAGCCTCAA	.	30.0	4.0	49.0	0.0	.	90
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2339468	2339468	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA3	NM_001089	exon20	c.G2667A	p.E889E	CTCCTCCTCGATG	.	67.0	16.0	110.0	0.0	.	1015
ABCA9	10350	hgsc.bcm.edu;bcgsc.ca	37	17	67017907	67017907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA9	NM_080283	exon18	c.G2377A	p.G793R	ATTTTCCTTCTAA	.	57.0	4.0	62.0	0.0	.	95
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101567952	101567952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC2	NM_000392	exon13	c.G1781A	p.S594N	CCCTGAGCATGCT	.	115.0	39.0	160.0	0.0	.	91
ABCC9	10060	hgsc.bcm.edu;bcgsc.ca	37	12	21962812	21962812	+	Missense_Mutation	SNP	A	A	G	rs144125604		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC9	NM_005691	exon35	c.T4289C	p.M1430T	TTGACCATATTCT	.	45.0	4.0	60.0	0.0	A|1.000;G|0.000	96
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39678655	39678655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM2	NM_001464	exon6	c.A379G	p.I127V	GTTCTATTCCATA	.	99.0	5.0	163.0	0.0	.	227
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	135087474	135087474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM8	NM_001164489	exon4	c.C287T	p.T96M	TGCTCCGTCACCT	.	62.0	17.0	101.0	0.0	.	90
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41206291	41206291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCK4	NM_024876	exon11	c.G959T	p.R320L	AGCACCCGTGTCG	.	77.0	29.0	109.0	0.0	.	319
ADCY10	55811	broad.mit.edu;bcgsc.ca	37	1	167849366	167849366	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCY10	NM_018417	exon11	c.A1203G	p.R401R	CTCGTGTCTCACA	.	136.0	6.0	176.0	1.0	.	493
AFF3	3899	hgsc.bcm.edu;bcgsc.ca	37	2	100185316	100185316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AFF3	NM_001025108	exon18	c.A3055G	p.M1019V	TCACCATTGCATC	.	121.0	6.0	125.0	0.0	.	230
AGXT	189	hgsc.bcm.edu;bcgsc.ca	37	2	241813425	241813425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGXT	NM_000030	exon6	c.A626G	p.K209R	CCCAGAAGGCCCT	.	52.0	4.0	74.0	0.0	.	90
ALDH7A1	501	ucsc.edu;bcgsc.ca	37	5	125887798	125887798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH7A1	NM_001182	exon14	c.C1232A	p.P411Q	ATTGTCGGTTCTA	.	65.0	6.0	90.0	1.0	.	227
ALG13	79868	hgsc.bcm.edu;bcgsc.ca	37	X	110980011	110980011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALG13	NM_001099922	exon23	c.G2599T	p.G867C	TCTAACGGTGCAG	.	166.0	7.0	262.0	0.0	.	130
ALPL	249	hgsc.bcm.edu;bcgsc.ca	37	1	21902359	21902359	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALPL	NM_000478	exon10	c.G1131T	p.A377A	CACTGCGGACCAT	.	108.0	5.0	129.0	0.0	.	94
ANKRD17	26057	hgsc.bcm.edu;bcgsc.ca	37	4	74005966	74005966	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD17	NM_032217	exon15	c.A2367G	p.P789P	GTTTGCTGGCAAA	.	84.0	4.0	89.0	0.0	.	234
ANO10	55129	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	43621859	43621859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO10	NM_018075	exon5	c.A578G	p.K193R	TGATACTTCAAAG	.	30.0	4.0	38.0	0.0	.	92
ANO6	196527	hgsc.bcm.edu;bcgsc.ca	37	12	45742051	45742051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO6	NM_001204803	exon6	c.A649T	p.I217L	TTTTACATAGTTG	.	213.0	16.0	275.0	0.0	.	516
ANXA5	308	hgsc.bcm.edu;bcgsc.ca	37	4	122607464	122607464	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANXA5	NM_001154	exon3	c.C73A	p.R25R	CCTTCCGAAGAGT	.	80.0	4.0	124.0	0.0	.	91
APCS	325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	159558025	159558025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APCS	NM_001639	exon2	c.A199T	p.S67C	GCCTACAGCCTCT	.	178.0	13.0	90.0	0.0	.	154
ARID1B	57492	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	157502170	157502170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARID1B	NM_020732	exon12	c.A3203G	p.E1068G	AGCCAGAGAGAAA	.	38.0	4.0	73.0	0.0	.	154
ARL5B	221079	hgsc.bcm.edu;bcgsc.ca	37	10	18963040	18963040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARL5B	NM_178815	exon5	c.C467A	p.S156Y	TTCAATCCTGCTG	.	64.0	4.0	85.0	0.0	.	228
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29192785	29192785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATAD5	NM_024857	exon11	c.T3200C	p.I1067T	AACTTATAGGAAA	.	229.0	68.0	279.0	0.0	.	93
ATP11A	23250	hgsc.bcm.edu;bcgsc.ca	37	13	113512575	113512575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP11A	NM_032189	exon22	c.T2638C	p.S880P	AGGATCTCTGAGC	.	121.0	5.0	168.0	0.0	.	138
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	90015326	90015326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP2B1	NM_001001323	exon9	c.G1587T	p.L529F	CCTTACCAATATT	.	81.0	4.0	115.0	0.0	.	516
ATP6V1G2	534	hgsc.bcm.edu;bcgsc.ca	37	6	31513188	31513188	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP6V1G2	NM_130463	exon3	c.C354A	p.A118A	GCCCTAGGCAGAA	.	58.0	4.0	56.0	0.0	.	90
BACE1	23621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117161738	117161739	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BACE1	NM_012104	exon7	c.970_971insG	p.L324fs	CTCCTAGCCAGAA	.	72.0	21.0	148.0	0.0	.	91
BAI1	575	hgsc.bcm.edu;bcgsc.ca	37	8	143603470	143603470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BAI1	NM_001702	exon20	c.G3169A	p.G1057S	TGCCTGGGCTGGG	.	57.0	4.0	64.0	0.0	.	1129
BBS1	582	hgsc.bcm.edu;bcgsc.ca	37	11	66283057	66283057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BBS1	NM_024649	exon5	c.G479T	p.R160L	GCATCCGGTGAGA	.	195.0	8.0	132.0	0.0	.	91
BIRC6	57448	hgsc.bcm.edu;bcgsc.ca	37	2	32678911	32678911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BIRC6	NM_016252	exon23	c.G4654T	p.G1552C	GCTGAGGGTAGTT	.	152.0	8.0	176.0	0.0	.	233
BMX	660	hgsc.bcm.edu;bcgsc.ca	37	X	15534284	15534284	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BMX	NM_001721	exon5	c.C375T	p.F125F	GTTCTTCGTGGAC	.	89.0	4.0	177.0	0.0	.	541
BOC	91653	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	112987288	112987288	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BOC	NM_033254	exon5	c.C519T	p.S173S	GGCCTCCAGAGGT	.	68.0	16.0	65.0	0.0	.	157
C11orf63	79864	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122830087	122830087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf63	NM_024806	exon9	c.A2271G	p.I757M	GGAAATACTGCAG	.	135.0	11.0	231.0	1.0	.	93
C11orf88	399949	hgsc.bcm.edu;bcgsc.ca	37	11	111385715	111385715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf88	NM_001100388	exon1	c.C206A	p.P69H	CGCGGCCCAGGAG	.	65.0	5.0	74.0	0.0	.	226
C11orf94	143678	hgsc.bcm.edu;bcgsc.ca	37	11	45928125	45928125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080446	exon3	c.C292A	p.L98I	GTCATAGGTGTGC	.	82.0	4.0	87.0	0.0	.	.
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20055874	20055874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C20orf26	NM_015585	exon5	c.T413C	p.L138P	TATTTCTCATCGT	.	140.0	42.0	218.0	0.0	.	94
C2orf44	80304	hgsc.bcm.edu;bcgsc.ca	37	2	24261602	24261602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf44	NM_025203	exon2	c.G763T	p.G255C	CTTCACCAATAAC	.	112.0	5.0	121.0	0.0	.	154
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219222293	219222293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf62	NM_198559	exon3	c.C155T	p.T52M	CTGAGACGCTGGC	.	109.0	13.0	111.0	0.0	.	68
C3P1	388503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10157854	10157854	+	RNA	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C3P1	.	.	.	.	CGTGGCAGTTTGT	.	205.0	47.0	184.0	0.0	.	90
CADM1	23705	hgsc.bcm.edu;bcgsc.ca	37	11	115109361	115109361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CADM1	NM_014333	exon3	c.A283G	p.S95G	ACCTGCTGTCCTT	.	86.0	4.0	129.0	0.0	.	92
CAMKK2	10645	hgsc.bcm.edu;bcgsc.ca	37	12	121701741	121701741	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAMKK2	NM_153500	exon6	c.T627C	p.R209R	AGGGCGACCTGAA	.	76.0	4.0	62.0	0.0	.	450
CAMSAP2	23271	hgsc.bcm.edu;bcgsc.ca	37	1	200708967	200708967	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203459	exon1	c.T12C	p.A4A	GGATGCTGCAGAC	.	184.0	8.0	175.0	0.0	.	.
CAPS2	84698	hgsc.bcm.edu;bcgsc.ca	37	12	75683540	75683540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAPS2	NM_032606	exon15	c.A1313G	p.K438R	TGTAGTTTTTCTT	.	98.0	4.0	107.0	0.0	.	92
CBS	875	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	44488625	44488625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBS	NM_000071	exon4	c.G310T	p.E104X	AGAGCTCACACTT	.	150.0	54.0	226.0	1.0	.	90
CBX7	23492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	39530449	39530449	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBX7	NM_175709	exon5	c.G555A	p.A185A	GCCAGCCGCCTGC	.	56.0	20.0	88.0	0.0	.	227
CCDC164	92749	hgsc.bcm.edu;bcgsc.ca	37	2	26624926	26624926	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC164	NM_145038	exon1	c.C69T	p.L23L	GATTCTCGCGCCC	.	64.0	4.0	122.0	0.0	.	92
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49105132	49105132	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC22	NM_014008	exon12	c.G1368T	p.L456L	AGAACTGCACCAG	.	174.0	35.0	260.0	0.0	.	130
CCDC61	729440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46498359	46498359	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC61	.	.	.	.	CCGGCTCTCCCTT	.	59.0	11.0	86.0	0.0	.	23
CCL15	6359	ucsc.edu;bcgsc.ca	37	17	34325404	34325404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCL15	NM_032965	exon3	c.T160C	p.C54R	AGGTGCAGCAGTC	.	41.0	4.0	51.0	0.0	.	91
CCNB1IP1	57820	ucsc.edu;bcgsc.ca	37	14	20784551	20784551	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCNB1IP1	NM_182852	exon6	c.A132G	p.S44S	AGCTGGTGAGCGA	.	43.0	4.0	76.0	1.0	.	659
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55664085	55664085	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCPG1	NM_020739	exon6	c.G612A	p.K204K	CAACTCCTTAGAA	.	204.0	34.0	271.0	0.0	.	91
CCR9	10803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45942794	45942794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCR9	NM_031200	exon3	c.A514G	p.I172V	TTTACCATCTGGG	.	72.0	20.0	106.0	0.0	.	660
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156280946	156280946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCT3	NM_005998	exon12	c.G1196A	p.R399H	ACATTGCGACACA	.	157.0	23.0	141.0	0.0	.	92
CD177	57126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43858024	43858024	+	RNA	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD177	.	.	.	.	GCTCTGCCAGTTT	.	99.0	28.0	146.0	1.0	.	22
CD300C	10871	hgsc.bcm.edu;bcgsc.ca	37	17	72537867	72537867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300C	NM_006678	exon4	c.T536C	p.F179S	TTGCTGAACAGGG	.	55.0	4.0	76.0	0.0	.	90
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41924620	41924620	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300LG	NM_001168323	exon1	c.G36A	p.L12L	CCTGCTGCTCCCA	.	94.0	22.0	106.0	0.0	.	90
CD48	962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160648872	160648872	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD48	NM_001778	exon4	c.G702A	p.V234V	GGTGGGCACCGTG	.	136.0	44.0	134.0	0.0	.	90
CD97	976	ucsc.edu;bcgsc.ca	37	19	14512305	14512305	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD97	NM_078481	exon10	c.A1005G	p.E335E	CCTTGAAGATATC	.	28.0	4.0	53.0	0.0	.	570
CEP128	145508	hgsc.bcm.edu;bcgsc.ca	37	14	80971326	80971326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP128	NM_152446	exon23	c.G3110T	p.G1037V	TCTAACCCACGAG	.	61.0	4.0	78.0	0.0	.	91
CEP63	80254	hgsc.bcm.edu;bcgsc.ca	37	3	134264444	134264444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP63	NM_001042383	exon7	c.G572T	p.R191L	TCAATCGGAAACA	.	78.0	4.0	105.0	0.0	.	493
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61765595	61765595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHD7	NM_017780	exon31	c.C6311T	p.A2104V	TTGGTGCTGCTAA	.	220.0	95.0	241.0	1.0	.	141
CHI3L2	1117	hgsc.bcm.edu;bcgsc.ca	37	1	111773369	111773369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHI3L2	NM_004000	exon3	c.G76A	p.A26T	GGATCTGCCTACA	.	60.0	4.0	77.0	0.0	.	514
CHST7	56548	hgsc.bcm.edu;bcgsc.ca	37	X	46433646	46433646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHST7	NM_019886	exon1	c.G280T	p.G94W	GCTGTCGGGGAGG	.	62.0	5.0	100.0	0.0	.	133
CLSTN2	64084	hgsc.bcm.edu;bcgsc.ca	37	3	140251313	140251313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLSTN2	NM_022131	exon9	c.G1492T	p.G498C	ACAGTCGGCGCTT	.	91.0	5.0	122.0	0.0	.	157
CNST	163882	hgsc.bcm.edu;bcgsc.ca	37	1	246784775	246784775	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNST	NM_152609	exon3	c.C424T	p.L142L	AAAGTACTAAGCG	.	92.0	4.0	68.0	0.0	.	90
CNTLN	54875	hgsc.bcm.edu;bcgsc.ca	37	9	17332673	17332673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTLN	NM_017738	exon10	c.A1589G	p.K530R	TACAGAAGCTGAG	.	137.0	6.0	244.0	0.0	.	91
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu	37	1	86340972	86340972	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL24A1	NM_152890	exon34	c.A3072G	p.E1024E	ACCTGGTTCACCT	.	108.0	5.0	220.0	0.0	.	94
COL4A1	1282	hgsc.bcm.edu;bcgsc.ca	37	13	110831299	110831299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A1	NM_001845	exon31	c.C2429A	p.P810H	CCTCCAGGGGGAC	.	52.0	4.0	69.0	0.0	.	654
COL4A2	1284	hgsc.bcm.edu;bcgsc.ca	37	13	111144454	111144454	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A2	NM_001846	exon38	c.A3492G	p.G1164G	GCAGGGAGAGCTG	.	57.0	4.0	84.0	0.0	.	95
CPSF4L	642843	hgsc.bcm.edu;bcgsc.ca	37	17	71257927	71257927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPSF4L	NM_001129885	exon1	c.T31C	p.F11L	AGGTGAACCGCTC	.	62.0	4.0	95.0	0.0	.	68
CREBBP	1387	hgsc.bcm.edu;bcgsc.ca	37	16	3778391	3778391	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CREBBP	NM_004380	exon31	c.C6657A	p.A2219A	CATGCCGGCACTC	.	76.0	5.0	82.0	0.0	.	1807
CRYBA1	1411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27580737	27580737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CRYBA1	NM_005208	exon5	c.C437T	p.P146L	ACTACCCCTCCTT	.	162.0	27.0	123.0	0.0	.	90
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2967694	2967694	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD1	NM_033225	exon43	c.T6594C	p.D2198D	AATGTAATCGTTG	.	52.0	4.0	72.0	0.0	.	86
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39184971	39184971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon5	c.T1345C	p.F449L	ATGTGAAGCTACA	.	88.0	5.0	124.0	0.0	.	230
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39185786	39185786	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon4	c.C622A	p.R208R	GAGCTCGACGTCG	.	90.0	6.0	146.0	0.0	.	230
CTNNB1	1499	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266882	41266882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon5	c.A553G	p.R185G	GCTTCCAGACACG	.	148.0	45.0	212.0	1.0	.	24361
CTNNB1	1499	hgsc.bcm.edu;bcgsc.ca	37	3	41275034	41275034	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon9	c.T1200C	p.G400G	GGAAGGTCTCCTT	.	97.0	5.0	107.0	0.0	.	24361
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35989740	35989740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CXorf22	NM_152632	exon12	c.T2008G	p.L670V	ATAGGCTTAGAGC	.	78.0	25.0	130.0	0.0	.	131
CYP4B1	1580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	47264911	47264911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP4B1	NM_000779	exon1	c.G158A	p.W53X	CCCACTGGCTTTT	.	70.0	25.0	137.0	0.0	.	92
DAGLB	221955	hgsc.bcm.edu;bcgsc.ca	37	7	6474496	6474496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DAGLB	NM_139179	exon4	c.T575C	p.V192A	TCCCACACGCTTG	.	114.0	6.0	190.0	0.0	.	70
DDX17	10521	hgsc.bcm.edu;broad.mit.edu	37	22	38897259	38897259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX17	NM_006386	exon2	c.T314C	p.L105P	GGGGGAAGGCCAC	.	73.0	4.0	63.0	0.0	.	229
DGCR14	8220	hgsc.bcm.edu;bcgsc.ca	37	22	19126802	19126802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DGCR14	NM_022719	exon6	c.T692C	p.V231A	TCAGGGACACCTG	.	78.0	4.0	61.0	0.0	.	116
DIRAS3	9077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	68512864	68512864	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIRAS3	NM_004675	exon2	c.C117T	p.R39R	CACGACGCGGTAA	.	106.0	30.0	147.0	0.0	.	848
DKK3	27122	hgsc.bcm.edu;bcgsc.ca	37	11	11988502	11988502	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DKK3	NM_015881	exon6	c.A672G	p.R224R	CTCACCTCTCTGG	.	129.0	6.0	232.0	0.0	.	721
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32490308	32490308	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DMD	NM_004006	exon22	c.C2922A	p.I974I	CTCCATGATTTCA	.	156.0	45.0	216.0	0.0	.	265
DNAH14	127602	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225440023	225440023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH14	NM_001373	exon44	c.G6751A	p.E2251K	ACTGGTGAATGTT	.	460.0	209.0	485.0	2.0	.	23
DNAH6	1768	hgsc.bcm.edu;bcgsc.ca	37	2	84955003	84955003	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH6	NM_001370	exon61	c.C10183A	p.R3395R	TTTCTCCGAGGTT	.	91.0	4.0	103.0	0.0	.	69
DOC2A	8448	hgsc.bcm.edu;bcgsc.ca	37	16	30020840	30020840	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOC2A	NM_003586	exon3	c.C301A	p.R101R	AGGCCCGGTCGTA	.	57.0	4.0	58.0	0.0	.	92
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117374691	117374691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DSCAML1	NM_020693	exon11	c.G2408A	p.R803H	TGGATGCGGCCAG	.	134.0	40.0	194.0	0.0	.	159
DST	667	hgsc.bcm.edu;bcgsc.ca	37	6	56350122	56350122	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon69	c.C13326A	p.I4442I	ATTATCGATCAGA	.	106.0	5.0	150.0	0.0	.	523
DST	667	hgsc.bcm.edu;bcgsc.ca	37	6	56365936	56365936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon61	c.A11969G	p.E3990G	TTCTGCTCACTTA	.	77.0	5.0	103.0	0.0	.	523
DVL2	1856	hgsc.bcm.edu;bcgsc.ca	37	17	7132581	7132581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon8	c.T830C	p.F277S	CCCAGGAAGTTGT	.	79.0	4.0	115.0	0.0	.	659
DVL2	1856	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7133190	7133190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon5	c.T593C	p.L198P	GTCATGAGGGTAG	.	50.0	4.0	93.0	0.0	.	659
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102494143	102494143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon47	c.C9236A	p.A3079E	ACCGGGCAGCTAC	.	59.0	14.0	88.0	0.0	.	98
EFTUD2	9343	hgsc.bcm.edu;bcgsc.ca	37	17	42937415	42937415	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EFTUD2	NM_004247	exon19	c.1720-2A>G	.	TGAGCCTGAGATC	.	116.0	5.0	145.0	0.0	.	91
EGLN2	112398	hgsc.bcm.edu;bcgsc.ca	37	19	41306565	41306565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGLN2	NM_053046	exon2	c.G88A	p.G30S	GAGCCTGGCCGGG	.	96.0	4.0	108.0	0.0	.	228
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62998523	62998523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EHBP1	NM_001142616	exon5	c.A308C	p.E103A	TCATAGAAAATGT	.	145.0	26.0	152.0	0.0	.	154
EIF2A	83939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150285799	150285799	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF2A	NM_032025	exon8	c.G660A	p.K220K	CTTTAAGGCAGAT	.	61.0	19.0	60.0	0.0	.	22
EIF4A3	9775	hgsc.bcm.edu;bcgsc.ca	37	17	78109863	78109863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF4A3	NM_014740	exon11	c.C1159A	p.R387S	GGATGCGGATGTC	.	58.0	4.0	81.0	0.0	.	227
ELOVL6	79071	hgsc.bcm.edu;bcgsc.ca	37	4	111119423	111119423	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELOVL6	NM_001130721	exon2	c.C69T	p.I23I	CCATTGGATGGCT	.	78.0	5.0	140.0	0.0	.	91
EMILIN2	84034	hgsc.bcm.edu;bcgsc.ca	37	18	2891118	2891118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EMILIN2	NM_032048	exon4	c.G993T	p.E331D	CATGGAGGGCATG	.	78.0	5.0	88.0	0.0	.	93
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132068028	132068028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENPP3	NM_005021	exon25	c.A2560G	p.K854E	CAGGATAAAGTGC	.	151.0	37.0	217.0	0.0	.	95
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41573037	41573037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EP300	NM_001429	exon31	c.A5322T	p.K1774N	ACGGAAAACCAAT	.	85.0	6.0	78.0	0.0	.	2011
ETF1	2107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137844000	137844000	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ETF1	NM_004730	exon11	c.C1308T	p.D436D	CTAGTAGTCATCA	.	124.0	19.0	96.0	0.0	.	229
EVX2	344191	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	176948256	176948256	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EVX2	NM_001080458	exon1	c.C249T	p.G83G	TTCGCTGCCCGTG	.	259.0	52.0	226.0	1.0	.	70
FAM129B	64855	hgsc.bcm.edu;bcgsc.ca	37	9	130272586	130272586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM129B	NM_022833	exon9	c.T1000C	p.C334R	GCACGCACACCTC	.	66.0	4.0	108.0	0.0	.	68
FAM155B	27112	hgsc.bcm.edu;bcgsc.ca	37	X	68725240	68725240	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM155B	NM_015686	exon1	c.C115A	p.R39R	TCCGAGCGGGCGC	.	55.0	4.0	54.0	0.0	.	131
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62067708	62067708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM161A	NM_032180	exon3	c.C431T	p.S144L	TTTTCTGATACAG	.	159.0	76.0	200.0	0.0	.	136
FANCM	57697	hgsc.bcm.edu;bcgsc.ca	37	14	45633698	45633698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FANCM	NM_020937	exon10	c.G1718T	p.R573L	TACAACGAATGGG	.	80.0	4.0	128.0	0.0	.	569
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92533159	92533159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon9	c.T6980C	p.V2327A	AGATTGTCCAGGA	.	56.0	23.0	78.0	1.0	.	73
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616016	92616016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon23	c.T12394C	p.Y4132H	GGCCAGTACTGCG	.	76.0	22.0	130.0	0.0	.	73
FBXL22	283807	hgsc.bcm.edu;bcgsc.ca	37	15	63889776	63889776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXL22	NM_203373	exon1	c.A185G	p.K62R	TCCAGAAGGACAA	.	83.0	4.0	80.0	0.0	.	90
FBXW2	26190	hgsc.bcm.edu;bcgsc.ca	37	9	123526947	123526947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXW2	NM_012164	exon8	c.G1255A	p.E419K	ATGCTTCGCCTGC	.	95.0	5.0	115.0	0.0	.	227
FDPS	2224	hgsc.bcm.edu;bcgsc.ca	37	1	155289468	155289468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FDPS	NM_001135821	exon9	c.T913C	p.F305L	GAGTTCTTTCAGA	.	88.0	4.0	118.0	0.0	.	90
FEM1A	55527	hgsc.bcm.edu;bcgsc.ca	37	19	4792961	4792961	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FEM1A	NM_018708	exon1	c.C1095A	p.T365T	GATCACCGACCCG	.	53.0	5.0	37.0	0.0	.	90
FGL2	10875	hgsc.bcm.edu;bcgsc.ca	37	7	76828978	76828978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGL2	NM_006682	exon1	c.A133G	p.S45G	CTCTGCTTTCTAG	.	89.0	4.0	112.0	0.0	.	92
FKBP5	2289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35604882	35604882	+	Silent	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FKBP5	NM_001145775	exon4	c.T159G	p.V53V	GACATAAACTTTG	.	117.0	40.0	204.0	0.0	.	227
FLRT1	23769	hgsc.bcm.edu;bcgsc.ca	37	11	63884020	63884020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLRT1	NM_013280	exon2	c.A281G	p.N94S	AGATCAACAACGC	.	61.0	5.0	65.0	0.0	.	90
FMO3	2328	hgsc.bcm.edu;bcgsc.ca	37	1	171076816	171076816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FMO3	NM_006894	exon4	c.A322G	p.T108A	TCTTAGACATTTG	.	143.0	6.0	156.0	0.0	.	187
FOCAD	54914	hgsc.bcm.edu;bcgsc.ca	37	9	20907148	20907148	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017794	exon24	c.2626-1G>T	.	CCCATAGGTTCAT	.	64.0	4.0	80.0	0.0	.	.
FOXL1	2300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612739	86612739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXL1	NM_005250	exon1	c.A410C	p.N137T	ACGGCAACTACCG	.	93.0	12.0	63.0	1.0	.	227
FOXL1	2300	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	86612753	86612753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXL1	NM_005250	exon1	c.A424G	p.K142E	CGCCGGAAGAGGA	.	67.0	11.0	52.0	1.0	.	227
FOXR1	283150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118842683	118842683	+	Silent	SNP	C	C	A	rs145283417	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR1	NM_181721	exon1	c.C42A	p.L14L	TCACCTCCCCTTA	.	25.0	13.0	73.0	0.0	C|0.999;A|0.001	228
FOXR2	139628	hgsc.bcm.edu;bcgsc.ca	37	X	55650629	55650629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR2	NM_198451	exon1	c.C485A	p.P162Q	AGGAACCAGACGA	.	86.0	5.0	154.0	0.0	.	227
FUCA1	2517	hgsc.bcm.edu;bcgsc.ca	37	1	24186295	24186295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FUCA1	NM_000147	exon4	c.C761A	p.P254H	TTGACAGGGCTGT	.	73.0	4.0	90.0	0.0	.	153
G3BP2	9908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	76573877	76573877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	G3BP2	NM_012297	exon9	c.C874T	p.R292C	GTTCACGCACACG	.	35.0	4.0	34.0	0.0	.	153
GAB1	2549	hgsc.bcm.edu;bcgsc.ca	37	4	144378898	144378898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAB1	NM_207123	exon7	c.G1651T	p.G551C	ACCATAGGTGACT	.	87.0	4.0	112.0	0.0	.	1146
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161300201	161300201	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRA1	NM_001127643	exon6	c.C334A	p.R112R	GTCCTCCGGTTAA	.	133.0	42.0	167.0	0.0	.	93
GABRB3	2562	hgsc.bcm.edu;bcgsc.ca	37	15	26812847	26812847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRB3	NM_021912	exon7	c.T716C	p.L239S	CTCTTCAACCGAA	.	80.0	4.0	103.0	0.0	.	518
GAS2L1	10634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29706429	29706429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.G634T	p.V212L	CCTCAGGTGAGGG	.	174.0	73.0	130.0	1.0	.	90
GAS2L1	10634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29706428	29706428	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.634-1G>T	.	GCCTCAGGTGAGG	.	173.0	72.0	129.0	0.0	.	90
GDPD3	79153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30124047	30124047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GDPD3	NM_024307	exon3	c.G250A	p.V84M	GTGACACCACCAC	.	40.0	13.0	52.0	0.0	.	90
GFM2	84340	hgsc.bcm.edu;bcgsc.ca	37	5	74028915	74028915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GFM2	NM_032380	exon16	c.C1519A	p.H507N	ACGCATGTTCCAA	.	84.0	4.0	108.0	0.0	.	90
GIPC1	10755	hgsc.bcm.edu;bcgsc.ca	37	19	14589371	14589371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GIPC1	NM_202468	exon8	c.A859G	p.M287V	CCACCATGGTGGC	.	107.0	6.0	149.0	0.0	.	226
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120181981	120181981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLUD2	NM_012084	exon1	c.G443A	p.G148E	GCAAGGGAGGTAT	.	147.0	38.0	246.0	0.0	.	131
GMPPA	29926	hgsc.bcm.edu;bcgsc.ca	37	2	220366718	220366718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GMPPA	NM_205847	exon5	c.C388T	p.H130Y	GAAGCCCACCGAC	.	65.0	6.0	115.0	0.0	.	90
GNLY	10578	hgsc.bcm.edu;bcgsc.ca	37	2	85922521	85922521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GNLY	NM_006433	exon2	c.C131T	p.P44L	CCTGCCCGTGCCT	.	84.0	4.0	78.0	0.0	.	90
GPBAR1	151306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219127770	219127770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPBAR1	NM_170699	exon2	c.G323T	p.G108V	TGCACGGGGAGCG	.	122.0	21.0	109.0	0.0	.	23
GPR123	84435	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134910585	134910585	+	Silent	SNP	C	C	T	rs62624493	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR123	NM_001083909	exon3	c.C111T	p.V37V	CTTCGTCACCTAC	.	36.0	8.0	35.0	0.0	C|0.725;G|0.275	90
GPR1	2825	hgsc.bcm.edu;bcgsc.ca	37	2	207041152	207041152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR1	NM_001098199	exon3	c.C820A	p.H274N	TATTGTGGTGAAT	.	83.0	4.0	127.0	0.0	.	90
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91700499	91700499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR68	NM_001177676	exon2	c.G896A	p.R299H	CGGAGGCGGGCCA	.	32.0	11.0	40.0	0.0	.	91
GPSM1	26086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	139250846	139250846	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPSM1	NM_001145638	exon13	c.C1665T	p.I555I	CCTCATCGCCAGC	.	65.0	19.0	76.0	0.0	.	90
GREB1L	80000	hgsc.bcm.edu;bcgsc.ca	37	18	19079688	19079688	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001142966	exon22	c.3392-2A>G	.	TCTCACAGGTTCC	.	67.0	4.0	77.0	0.0	.	.
GRID2IP	392862	hgsc.bcm.edu;bcgsc.ca	37	7	6561059	6561059	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001145118	exon7	c.1084+1G>A	.	GTCTCACCACTGG	.	97.0	5.0	144.0	0.0	.	.
GRIK1	2897	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	30971254	30971254	+	Silent	SNP	G	G	T	rs113829116	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIK1	NM_175611	exon8	c.C1102A	p.R368R	CCCACCGGGCCTG	.	45.0	4.0	48.0	0.0	T|0.000;C|0.999	137
GRIN1	2902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140036523	140036523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIN1	NM_000832	exon2	c.C317T	p.P106L	CCACCCCTGTCTC	.	191.0	32.0	287.0	0.0	.	187
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14548375	14548375	+	RNA	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIP2	.	.	.	.	CACTGGGCACAGC	.	77.0	28.0	124.0	1.0	.	69
GRIPAP1	56850	hgsc.bcm.edu;bcgsc.ca	37	X	48855662	48855662	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIPAP1	NM_020137	exon3	c.C159T	p.S53S	AGCTTTGCTGAAC	.	137.0	6.0	175.0	0.0	.	227
GTSE1	51512	hgsc.bcm.edu;bcgsc.ca	37	22	46704834	46704834	+	Silent	SNP	G	G	T	rs200502529	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GTSE1	NM_016426	exon4	c.G756T	p.A252A	GGCTGCGGAGAAG	.	64.0	4.0	112.0	0.0	G|0.999;A|0.001	187
GUSB	2990	hgsc.bcm.edu;bcgsc.ca	37	7	65435344	65435344	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GUSB	NM_000181	exon9	c.C1401A	p.I467I	GTGAGCGATCACC	.	89.0	5.0	82.0	0.0	.	90
GZF1	64412	hgsc.bcm.edu;bcgsc.ca	37	20	23345335	23345335	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GZF1	NM_022482	exon1	c.G315T	p.R105R	AGATCGGGTGCAG	.	93.0	4.0	123.0	0.0	.	91
HGFAC	3083	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	4	3443800	3443800	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HGFAC	NM_001528	exon1	c.G72C	p.L24L	CCTCCTGCTGCTG	.	22.0	4.0	27.0	0.0	.	514
HIPK1	204851	hgsc.bcm.edu;bcgsc.ca	37	1	114499248	114499248	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIPK1	NM_152696	exon6	c.1408-1G>T	.	TTGGAAGGTGAAT	.	60.0	4.0	95.0	0.0	.	361
HNRNPL	3191	hgsc.bcm.edu;bcgsc.ca	37	19	39336338	39336338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HNRNPL	NM_001533	exon4	c.T662C	p.V221A	CTCTGGACAGGGC	.	66.0	4.0	79.0	0.0	.	22
HSD3B7	80270	hgsc.bcm.edu;bcgsc.ca	37	16	30997766	30997766	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSD3B7	NM_025193	exon4	c.T345C	p.A115A	CGAGGCTTGTGTG	.	123.0	6.0	96.0	0.0	.	90
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122930222	122930222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPA8	NM_006597	exon5	c.A1079G	p.N360S	CTCTTATTCAGTT	.	122.0	12.0	146.0	0.0	.	654
HTT	3064	hgsc.bcm.edu;bcgsc.ca	37	4	3131704	3131704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon13	c.G1797T	p.Q599H	GCCCCAGGATGAA	.	99.0	6.0	100.0	0.0	.	281
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3225849	3225849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon56	c.G7756T	p.A2586S	TCTCCGGCTACTA	.	98.0	35.0	98.0	0.0	.	281
ICMT	23463	broad.mit.edu;ucsc.edu	37	1	6292060	6292060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ICMT	NM_012405	exon4	c.G574T	p.E192X	ATTTTTCATTCTG	.	182.0	44.0	157.0	2.0	.	650
IFIT2	3433	hgsc.bcm.edu;bcgsc.ca	37	10	91066851	91066851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFIT2	NM_001547	exon2	c.T1138C	p.F380L	GGCAACTTTCAGC	.	91.0	4.0	96.0	0.0	.	92
IFT122	55764	hgsc.bcm.edu;bcgsc.ca	37	3	129238004	129238004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT122	NM_052985	exon29	c.C3599A	p.P1200Q	AGGACCCGTTCAC	.	93.0	5.0	145.0	0.0	.	92
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65621487	65621487	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGDCC3	NM_004884	exon15	c.2206-1G>T	.	ATCCTGCTGGGGA	.	46.0	16.0	51.0	0.0	.	93
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca	37	6	160450671	160450671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGF2R	NM_000876	exon7	c.C866A	p.P289Q	TTTGCCCGTCGGA	.	125.0	5.0	168.0	0.0	.	118
IKBKAP	8518	hgsc.bcm.edu;bcgsc.ca	37	9	111665171	111665171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKBKAP	NM_003640	exon16	c.T1802C	p.V601A	AACCGAACAGGAA	.	120.0	6.0	175.0	0.0	.	318
IKZF3	22806	bcgsc.ca;mdanderson.org	37	17	37922726	37922726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKZF3	NM_012481	exon8	c.G847T	p.D283Y	TGACATCAAAGCA	.	19.0	3.0	29.0	0.0	.	971
IL1R1	3554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102791944	102791944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL1R1	NM_000877	exon10	c.A1142G	p.D381G	CTTCAGATGGAAA	.	557.0	109.0	555.0	0.0	.	523
IRF6	3664	hgsc.bcm.edu;bcgsc.ca	37	1	209974642	209974642	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRF6	NM_006147	exon3	c.C117T	p.P39P	TTTCCAGGGAATC	.	79.0	4.0	101.0	0.0	.	92
KAT2B	8850	hgsc.bcm.edu;bcgsc.ca	37	3	20153102	20153102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KAT2B	NM_003884	exon6	c.G866A	p.C289Y	GTTACTGCAACGT	.	73.0	4.0	86.0	0.0	.	228
KBTBD3	143879	hgsc.bcm.edu;bcgsc.ca	37	11	105924774	105924774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KBTBD3	NM_152433	exon3	c.G642A	p.M214I	CAGTACCATTTCT	.	92.0	4.0	88.0	0.0	.	91
KCNA10	3744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111061042	111061042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA10	NM_005549	exon1	c.A368G	p.D123G	ATGGAGTCAAAGA	.	29.0	5.0	42.0	0.0	.	156
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5153812	5153812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA5	NM_002234	exon1	c.C499T	p.R167C	TTCGACCGCAACC	.	63.0	26.0	98.0	0.0	.	715
KCNAB1	7881	hgsc.bcm.edu;bcgsc.ca	37	3	155838515	155838515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNAB1	NM_172160	exon1	c.T115C	p.S39P	AAAGCCTCAGAAA	.	137.0	6.0	197.0	0.0	.	94
KCNH4	23415	hgsc.bcm.edu;bcgsc.ca	37	17	40321671	40321671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNH4	NM_012285	exon9	c.G1414A	p.G472R	CGTTCCCGAACAC	.	66.0	4.0	73.0	0.0	.	153
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133153569	133153569	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNQ3	NM_004519	exon10	c.G1272A	p.L424L	GAGACCCAGCTTT	.	105.0	50.0	85.0	0.0	.	138
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7749921	7749921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDM6B	NM_001080424	exon8	c.C574T	p.R192W	GCCAAGCGGGGAG	.	63.0	26.0	73.0	0.0	.	205
KDSR	2531	hgsc.bcm.edu;bcgsc.ca	37	18	61034244	61034244	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDSR	NM_002035	exon1	c.G108A	p.V36V	ACTCACCACCACA	.	134.0	6.0	226.0	0.0	.	227
KIAA1033	23325	hgsc.bcm.edu;bcgsc.ca	37	12	105534742	105534742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1033	NM_015275	exon17	c.G1626T	p.L542F	AGTTTTGGCTGAA	.	103.0	5.0	162.0	0.0	.	91
KIAA1429	25962	hgsc.bcm.edu;bcgsc.ca	37	8	95531221	95531221	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1429	NM_015496	exon9	c.A2505G	p.E835E	CAAGGCTTCTTTG	.	68.0	4.0	64.0	0.0	.	92
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138554406	138554406	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1549	NM_020910	exon14	c.C4653T	p.D1551D	CAGGTCGTCTACC	.	194.0	31.0	161.0	0.0	.	369
KIF18B	146909	hgsc.bcm.edu;bcgsc.ca	37	17	43012257	43012257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF18B	NM_001264573	exon4	c.T518C	p.L173P	ATGGCAAGGGGCC	.	56.0	5.0	57.0	0.0	.	70
KIF19	124602	hgsc.bcm.edu;bcgsc.ca	37	17	72324604	72324604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF19	NM_153209	exon2	c.A80G	p.E27G	AGCTGGAGGAAGG	.	49.0	4.0	78.0	0.0	.	90
KLC2	64837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66031564	66031564	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLC2	NM_022822	exon8	c.G990T	p.L330L	CAACCTGGCCCTG	.	142.0	18.0	118.0	0.0	.	90
KLF12	11278	hgsc.bcm.edu;bcgsc.ca	37	13	74420058	74420058	+	Silent	SNP	C	C	A	rs200955639	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLF12	NM_007249	exon4	c.G576T	p.S192S	AGGCACCGACTGT	.	137.0	7.0	166.0	0.0	C|0.999;T|0.000	91
KRT16	3868	hgsc.bcm.edu;bcgsc.ca	37	17	39766790	39766790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT16	NM_005557	exon6	c.A1073G	p.E358G	CTGTTCTCCAGGG	.	83.0	4.0	98.0	0.0	.	91
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	46020985	46020985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_198689	exon2	c.C449A	p.P150H	CCTCCCCCTGCCA	.	437.0	120.0	630.0	0.0	.	.
LAMB4	22798	hgsc.bcm.edu;bcgsc.ca	37	7	107720067	107720067	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMB4	NM_007356	exon15	c.T1866C	p.I622I	AATGGCAATGGTG	.	49.0	4.0	74.0	0.0	.	140
LPAR3	23566	hgsc.bcm.edu;bcgsc.ca	37	1	85331068	85331068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPAR3	NM_012152	exon2	c.G736T	p.G246W	ACCTACCTAAGAC	.	71.0	4.0	118.0	0.0	.	502
LPIN3	64900	hgsc.bcm.edu;bcgsc.ca	37	20	39986061	39986061	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPIN3	NM_022896	exon16	c.C2013A	p.I671I	GGGCATCACCAGT	.	65.0	5.0	66.0	0.0	.	93
LPO	4025	hgsc.bcm.edu;bcgsc.ca	37	17	56344752	56344752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPO	NM_006151	exon12	c.A1736G	p.Q579R	AGCCGCAGACACT	.	62.0	4.0	88.0	0.0	.	91
LPP	4026	hgsc.bcm.edu;bcgsc.ca	37	3	188592145	188592145	+	Missense_Mutation	SNP	G	G	T	rs9830664	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPP	NM_005578	exon11	c.G1717T	p.G573C	GATTGCGGTGGTC	.	79.0	4.0	67.0	0.0	G|0.998;A|0.002	659
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57573622	57573622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon30	c.C5024G	p.T1675R	TCTGGACAAGCTA	.	72.0	16.0	89.0	0.0	.	596
LRP1B	53353	hgsc.bcm.edu;bcgsc.ca	37	2	141777526	141777526	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon12	c.T1935C	p.S645S	GGGATGAGACATT	.	84.0	5.0	100.0	0.0	.	311
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141773444	141773444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon13	c.G2011T	p.D671Y	CGCTGTCATCTAT	.	238.0	72.0	322.0	0.0	.	311
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170044602	170044602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP2	NM_004525	exon49	c.A9206T	p.H3069L	GGGGTGTGGCACA	.	196.0	49.0	318.0	0.0	.	175
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46896443	46896443	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP4	NM_002334	exon28	c.C4137A	p.V1379V	AACAGGGACATGC	.	114.0	31.0	134.0	0.0	.	94
LRRC43	254050	hgsc.bcm.edu;bcgsc.ca	37	12	122669301	122669301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC43	NM_001098519	exon2	c.G386T	p.R129L	ACTTCCGGTCCCT	.	144.0	6.0	192.0	0.0	.	135
LSS	4047	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	47616149	47616149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSS	NM_001001438	exon18	c.G1703T	p.R568L	TGCCGCCGACAGA	.	41.0	4.0	72.0	0.0	.	90
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	24759781	24759781	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LUZP2	NM_001252010	exon4	c.C266G	p.S89C	TGAAGTCTCTTCA	.	183.0	55.0	251.0	1.0	.	92
LYG2	254773	hgsc.bcm.edu;bcgsc.ca	37	2	99870712	99870712	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LYG2	NM_175735	exon2	c.C12A	p.S4S	CACCACGGAGGAT	.	57.0	5.0	73.0	0.0	.	91
MAT1A	4143	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82039957	82039957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAT1A	NM_000429	exon5	c.C521A	p.P174H	AGCCAGGGGAGGA	.	70.0	19.0	100.0	0.0	.	90
MBD1	4152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	47803368	47803368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBD1	NM_001204137	exon4	c.G226T	p.A76S	GATGGGCCTGGAA	.	131.0	28.0	166.0	0.0	.	228
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47680812	47680812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM3AP	NM_003906	exon15	c.A3476G	p.Q1159R	CTCTCTTGTTTCA	.	54.0	4.0	122.0	0.0	.	291
MCM8	84515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	5974231	5974231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM8	NM_032485	exon18	c.T2320C	p.S774P	AACAGGTCAACAG	.	88.0	8.0	111.0	1.0	.	227
MGAT1	4245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180219412	180219412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MGAT1,NS,carcinoma,-1	MGAT1	NM_001114617	exon3	c.G560T	p.R187L	TAGTGGCGCGCGA	.	91.0	30.0	110.0	0.0	.	91
MLL	4297	hgsc.bcm.edu;bcgsc.ca	37	11	118377325	118377325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL	NM_001197104	exon27	c.C10718T	p.P3573L	ACATTCCAGACCA	.	51.0	4.0	104.0	0.0	.	1255
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36229093	36229093	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL4	NM_014727	exon36	c.7872+1G>T	.	GGGAAGGTGGGCT	.	46.0	16.0	123.0	0.0	.	697
MLLT1	4298	hgsc.bcm.edu;bcgsc.ca	37	19	6222582	6222582	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLLT1	NM_005934	exon6	c.T660C	p.R220R	CTGCTCACGCTCC	.	71.0	5.0	58.0	0.0	.	658
MOCOS	55034	hgsc.bcm.edu;bcgsc.ca	37	18	33775243	33775243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MOCOS	NM_017947	exon2	c.G166T	p.G56C	CATGCAGGTGCCA	.	99.0	4.0	92.0	0.0	.	91
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95756225	95756225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS5	NM_031902	exon11	c.G974A	p.R325Q	ATGAGCCGGCAGA	.	87.0	24.0	122.0	0.0	.	92
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10603489	10603489	+	Missense_Mutation	SNP	G	G	A	rs199557491		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRVI1	NM_130385	exon19	c.C2285T	p.A762V	GTCAGCGCAGGAG	.	76.0	33.0	126.0	0.0	G|0.999;A|0.001	25
MS4A13	503497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60292725	60292725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MS4A13	NM_001012417	exon5	c.A232T	p.I78F	ACTACAATTACTG	.	373.0	126.0	408.0	0.0	.	90
MYH14	79784	hgsc.bcm.edu;bcgsc.ca	37	19	50792838	50792838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH14	NM_001145809	exon35	c.A4898G	p.Q1633R	AGACTCAGCATGA	.	70.0	4.0	82.0	0.0	.	23
MYO6	4646	hgsc.bcm.edu;bcgsc.ca	37	6	76542624	76542624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO6	NM_004999	exon6	c.T457A	p.S153T	GGAGAATCAGGAG	.	84.0	4.0	109.0	0.0	.	92
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36239245	36239245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEA	NM_015678	exon55	c.G8323A	p.V2775I	AGAGCCGTCCTCA	.	177.0	53.0	282.0	0.0	.	144
NBEAL2	23218	hgsc.bcm.edu;bcgsc.ca	37	3	47046023	47046023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEAL2	NM_015175	exon38	c.G6237T	p.L2079F	GTACTTGATGCAA	.	74.0	4.0	139.0	0.0	.	69
NCOA3	8202	broad.mit.edu;bcgsc.ca	37	20	46265318	46265320	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon12	c.2218_2220del	p.740_740del	AGTCCTAAGAAGA	.	205.0	28.0	197.0	0.0	.	229
NCOA3	8202	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	46264392	46264392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon11	c.T1469G	p.I490S	AGAATATCATGAT	.	143.0	37.0	143.0	0.0	.	229
NDEL1	81565	hgsc.bcm.edu;bcgsc.ca	37	17	8347657	8347657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDEL1	NM_001025579	exon2	c.C68A	p.S23Y	AACTTTCCTTGAA	.	88.0	4.0	120.0	0.0	.	90
NDUFAF1	51103	hgsc.bcm.edu;bcgsc.ca	37	15	41687071	41687071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDUFAF1	NM_016013	exon3	c.T745C	p.W249R	CCTGCCAGTAGGG	.	71.0	4.0	95.0	0.0	.	91
NEDD4L	23327	hgsc.bcm.edu;bcgsc.ca	37	18	56002763	56002763	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEDD4L	NM_001144967	exon13	c.A1119G	p.E373E	TGAGGAACCAACG	.	115.0	5.0	110.0	0.0	.	658
NEIL1	79661	hgsc.bcm.edu;bcgsc.ca	37	15	75647049	75647049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEIL1	NM_001256552	exon9	c.T1250C	p.L417P	GAGACCTTCCTAA	.	66.0	4.0	82.0	0.0	.	659
NOL4	8715	hgsc.bcm.edu;bcgsc.ca	37	18	31523052	31523052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NOL4	NM_003787	exon9	c.A1519G	p.R507G	GCATCCTCTTGGC	.	65.0	4.0	89.0	0.0	.	93
NSD1	64324	hgsc.bcm.edu;bcgsc.ca	37	5	176722361	176722361	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.T7992C	p.S2664S	CTGGTCTCTTGGA	.	96.0	5.0	139.0	0.0	.	188
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176722236	176722236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.A7867C	p.S2623R	GAGCAAAGTCCCT	.	110.0	39.0	151.0	0.0	.	188
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87339221	87339221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK2	NM_001018065	exon8	c.C803T	p.A268V	GTGTGGCGGAAAA	.	140.0	35.0	188.0	0.0	.	1404
NTRK3	4916	hgsc.bcm.edu;bcgsc.ca	37	15	88679734	88679734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK3	NM_001243101	exon8	c.G729C	p.W243C	GACTATCCAGTCC	.	75.0	4.0	134.0	0.0	.	3538
NUDT5	11164	hgsc.bcm.edu;bcgsc.ca	37	10	12219892	12219892	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NUDT5,NS,NS,-1	NUDT5	NM_014142	exon5	c.G189T	p.A63A	GATGACCGCGACA	.	48.0	4.0	57.0	0.0	.	92
NUP188	23511	hgsc.bcm.edu;bcgsc.ca	37	9	131765691	131765691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP188	NM_015354	exon38	c.G4392T	p.K1464N	CATGAAGGAGTGG	.	46.0	4.0	67.0	0.0	.	207
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226378371	226378371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020864	exon3	c.C506T	p.T169I	GGAAAACCCCTGA	.	67.0	14.0	86.0	0.0	.	.
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226447056	226447056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020864	exon4	c.A923G	p.K308R	TCGCCAAGGCCTC	.	117.0	27.0	114.0	0.0	.	.
OAS1	4938	hgsc.bcm.edu;bcgsc.ca	37	12	113357204	113357204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OAS1	NM_016816	exon6	c.A1049G	p.N350S	AAAGCAACAGTGC	.	92.0	5.0	93.0	0.0	.	70
OGDHL	55753	hgsc.bcm.edu;bcgsc.ca	37	10	50948862	50948862	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OGDHL	NM_018245	exon16	c.T2034C	p.H678H	CTGGTCATGGAGA	.	47.0	4.0	67.0	0.0	.	69
OR10A3	26496	hgsc.bcm.edu;bcgsc.ca	37	11	7960614	7960614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10A3	NM_001003745	exon1	c.G454T	p.G152W	TGATCCCTGAGAT	.	129.0	6.0	117.0	0.0	.	69
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	123901212	123901212	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10G8	NM_001004464	exon1	c.A883T	p.K295X	GAGGTGAAGAAAG	.	201.0	63.0	284.0	0.0	.	92
OR2AG2	338755	broad.mit.edu;bcgsc.ca	37	11	6789972	6789972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR2AG2	NM_001004490	exon1	c.T217C	p.F73L	ATGTGAACAGGAG	.	119.0	6.0	183.0	1.0	.	71
OR4K14	122740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20483233	20483233	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR4K14	NM_001004712	exon1	c.G120T	p.L40L	GTTACCCAGCATA	.	224.0	78.0	296.0	0.0	.	115
OR8G5	219865	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	11	124134976	124134976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001005198	exon1	c.G254A	p.G85E	TGATTGGGCTCAG	.	123.0	34.0	137.0	0.0	.	.
OXA1L	5018	hgsc.bcm.edu;bcgsc.ca	37	14	23237290	23237290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OXA1L	NM_005015	exon3	c.G529T	p.G177W	GGGCTGGGGTCAT	.	68.0	4.0	113.0	0.0	.	204
P2RX3	5024	hgsc.bcm.edu;bcgsc.ca	37	11	57115686	57115686	+	Missense_Mutation	SNP	G	G	T	rs115850675	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RX3	NM_002559	exon5	c.G434T	p.R145L	TGCTCCGGACCTG	.	68.0	5.0	57.0	0.0	G|0.996;A|0.004	68
P4HB	5034	hgsc.bcm.edu;bcgsc.ca	37	17	79817083	79817083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P4HB	NM_000918	exon2	c.A326G	p.D109G	GCCGTGTCTCCAT	.	82.0	6.0	116.0	0.0	.	46
PADI4	23569	hgsc.bcm.edu;bcgsc.ca	37	1	17674451	17674451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PADI4	NM_012387	exon10	c.G1063T	p.G355C	GAGATCGGCTACA	.	65.0	4.0	119.0	0.0	.	70
PALM2-AKAP2	445815	hgsc.bcm.edu;bcgsc.ca	37	9	112899145	112899145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALM2-AKAP2	NM_007203	exon8	c.A1321G	p.R441G	AAAGTGAGGCCTT	.	93.0	4.0	130.0	0.0	.	475
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419215	122419215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARP14	NM_017554	exon6	c.A1814G	p.N605S	TTGAGAACAAAGA	.	79.0	4.0	92.0	0.0	.	525
PAWR	5074	hgsc.bcm.edu;bcgsc.ca	37	12	80007382	80007382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAWR	NM_002583	exon4	c.C656A	p.P219H	GTTCTAGGTGGCT	.	98.0	6.0	137.0	0.0	.	90
PAXIP1	22976	hgsc.bcm.edu;bcgsc.ca	37	7	154738503	154738503	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAXIP1	NM_007349	exon18	c.A2943G	p.T981T	TCCAGGTGTGATG	.	49.0	4.0	44.0	0.0	.	228
PCDHAC2	56134	hgsc.bcm.edu;bcgsc.ca	37	5	140347691	140347691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHAC2	NM_031883	exon1	c.C1340A	p.P447Q	GAATACCGCAGCT	.	87.0	5.0	151.0	0.0	.	26
PCDHGA6	56109	hgsc.bcm.edu;bcgsc.ca	37	5	140754660	140754660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA6	NM_018919	exon1	c.T1010C	p.I337T	TAACTATCTTGGA	.	98.0	6.0	151.0	0.0	.	67
PCDHGC5	56097	ucsc.edu;bcgsc.ca	37	5	140871104	140871104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGC5	NM_018929	exon1	c.C2297A	p.P766H	TGCGGCCCACAGA	.	42.0	4.0	99.0	0.0	.	25
PDE6A	5145	hgsc.bcm.edu;bcgsc.ca	37	5	149278051	149278051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE6A	NM_000440	exon10	c.G1282T	p.G428C	ACCAGCCCAGAAA	.	57.0	4.0	52.0	0.0	.	92
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15127208	15127208	+	Silent	SNP	C	C	A	rs151129728	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDXDC1	NM_015027	exon19	c.C1764A	p.L588L	TGAGCTCGTGGAG	.	72.0	4.0	86.0	0.0	C|1.000;T|0.000	91
PGD	5226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10471547	10471547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGD	NM_002631	exon7	c.A592T	p.I198F	CAGCTGATCTGTG	.	134.0	48.0	175.0	0.0	.	91
PGM5	5239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71144546	71144546	+	Missense_Mutation	SNP	C	C	G	rs190312271	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGM5	NM_021965	exon11	c.C1678G	p.R560G	ACTGGCCGGAGGG	.	104.0	34.0	140.0	1.0	C|0.999;T|0.001	92
PHF19	26147	hgsc.bcm.edu;bcgsc.ca	37	9	123636996	123636996	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHF19	NM_015651	exon2	c.A24G	p.P8P	AGTCCCTGGATCC	.	63.0	4.0	58.0	0.0	.	136
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71915637	71915637	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHKA1	NM_001172436	exon4	c.G375A	p.V125V	ATCACCCACTACA	.	886.0	223.0	1273.0	1.0	.	134
PHLDB2	90102	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111604197	111604197	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHLDB2	NM_001134437	exon3	c.C1354T	p.L452L	GATGACCTGATGG	.	66.0	18.0	73.0	1.0	.	96
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47898327	47898327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon27	c.A4306G	p.K1436E	CCTCCTTCGAGTT	.	77.0	4.0	80.0	0.0	.	145
PKD1L1	168507	hgsc.bcm.edu;bcgsc.ca	37	7	47947753	47947753	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon9	c.C1323A	p.A441A	AGACACGGCCTCA	.	75.0	4.0	75.0	0.0	.	145
PLEK	5341	hgsc.bcm.edu;bcgsc.ca	37	2	68607861	68607861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEK	NM_002664	exon3	c.T205C	p.F69L	TTTGTGTTTAAGA	.	95.0	5.0	111.0	0.0	.	91
PLEKHG1	57480	hgsc.bcm.edu;bcgsc.ca	37	6	151152098	151152098	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHG1	NM_001029884	exon16	c.A1851G	p.T617T	CAACACATGCCCT	.	62.0	4.0	114.0	0.0	.	92
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50720691	50720691	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB2	NM_012401	exon19	c.G3039A	p.R1013R	GGCAAACCTCTGG	.	90.0	20.0	122.0	0.0	.	211
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	153032892	153032892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB3	NM_001163257	exon4	c.G679T	p.A227S	CCCCTGGCCATCC	.	66.0	10.0	50.0	0.0	.	130
POLR2I	5438	hgsc.bcm.edu;bcgsc.ca	37	19	36605106	36605106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLR2I	NM_006233	exon4	c.C236A	p.P79Q	GTCCGCGGCAACG	.	123.0	7.0	129.0	0.0	.	90
POPDC2	64091	hgsc.bcm.edu;bcgsc.ca	37	3	119378819	119378819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POPDC2	NM_022135	exon1	c.A452G	p.E151G	GGTGTCTCACCCT	.	76.0	5.0	96.0	0.0	.	90
PPFIA3	8541	broad.mit.edu;bcgsc.ca	37	19	49636569	49636569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPFIA3	NM_003660	exon9	c.G1102A	p.A368T	CAGAAAGCGGAGA	.	163.0	27.0	155.0	1.0	.	226
PPP4R1	9989	hgsc.bcm.edu;bcgsc.ca	37	18	9557375	9557375	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPP4R1	NM_001042388	exon15	c.A2034G	p.K678K	TCGAACTTTCCAC	.	78.0	4.0	94.0	0.0	.	227
PRAMEF19	645414	broad.mit.edu;bcgsc.ca	37	1	13475005	13475005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099790	exon3	c.G1124A	p.R375H	GAGCAGCGGCTCA	.	909.0	227.0	1324.0	1.0	.	.
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69104651	69104651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PREX2	NM_024870	exon37	c.G4495A	p.A1499T	GCCTGTGCAAACA	.	68.0	17.0	73.0	0.0	.	390
PRF1	5551	hgsc.bcm.edu;bcgsc.ca	37	10	72357906	72357906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRF1	NM_001083116	exon3	c.G1571T	p.R524M	AAGCACCTGGCAT	.	79.0	6.0	88.0	0.0	.	578
PRKCH	5583	hgsc.bcm.edu;bcgsc.ca	37	14	61920071	61920071	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKCH	NM_006255	exon7	c.G960T	p.S320S	AACCTCGGTGAGA	.	112.0	5.0	114.0	0.0	.	1063
PRKD1	5587	hgsc.bcm.edu;bcgsc.ca	37	14	30068321	30068321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKD1	NM_002742	exon15	c.C2078T	p.A693V	CGCAAAGCCACGA	.	70.0	4.0	101.0	0.0	.	1534
PROM2	150696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	95950732	95950732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PROM2	NM_001165977	exon15	c.C1744T	p.R582W	AAGCTACGGCAGG	.	136.0	46.0	199.0	1.0	.	91
PSD2	84249	hgsc.bcm.edu;bcgsc.ca	37	5	139189371	139189371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSD2	NM_032289	exon2	c.C346A	p.P116T	CTCTACCCAGATG	.	113.0	5.0	64.0	0.0	.	91
PSMG1	8624	hgsc.bcm.edu;bcgsc.ca	37	21	40553799	40553799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSMG1	NM_203433	exon2	c.T140C	p.V47A	AGCCGCACTTCCC	.	89.0	6.0	94.0	0.0	.	68
PTK2	5747	hgsc.bcm.edu;bcgsc.ca	37	8	141753415	141753415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTK2	NM_005607	exon20	c.G1715T	p.R572L	ACATTCCGAGCAG	.	91.0	4.0	76.0	0.0	.	1517
PTPN21	11099	hgsc.bcm.edu;bcgsc.ca	37	14	88974267	88974267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPN21	NM_007039	exon4	c.G448A	p.A150T	ATTTACCTTGAAC	.	79.0	4.0	95.0	0.0	.	230
PTPRF	5792	hgsc.bcm.edu;bcgsc.ca	37	1	44083444	44083444	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRF	NM_002840	exon25	c.C4233A	p.I1411I	CTACATCGATGGC	.	116.0	6.0	144.0	0.0	.	232
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8378411	8378411	+	Missense_Mutation	SNP	G	G	T	rs202020478	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRM	NM_001105244	exon27	c.G3611T	p.R1204L	AATTCCGGGTAAG	.	87.0	4.0	156.0	0.0	G|0.999;A|0.001	228
PTPRS	5802	hgsc.bcm.edu;bcgsc.ca	37	19	5208037	5208037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon37	c.A5674G	p.T1892A	TAAGCGTGATGAA	.	52.0	4.0	63.0	0.0	.	357
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5216748	5216748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon26	c.C4079T	p.P1360L	AACCCCGGCTCCC	.	369.0	69.0	460.0	0.0	.	357
PTS	5805	hgsc.bcm.edu;bcgsc.ca	37	11	112104184	112104184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTS	NM_000317	exon6	c.G344T	p.W115L	ATATCTGGGACAA	.	93.0	5.0	114.0	0.0	.	90
PUF60	22827	hgsc.bcm.edu;bcgsc.ca	37	8	144904074	144904074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_078480	exon3	c.T121C	p.S41P	TGATGGAGTCTGT	.	61.0	4.0	61.0	0.0	.	.
RAB15	376267	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	14	65417736	65417736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAB15	NM_198686	exon4	c.C380A	p.A127E	CGCCTTGCCTTCC	.	35.0	5.0	31.0	0.0	.	228
RADIL	55698	hgsc.bcm.edu;bcgsc.ca	37	7	4917718	4917718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RADIL	NM_018059	exon2	c.A53G	p.K18R	TGCCGCTTCAGTT	.	83.0	4.0	98.0	0.0	.	994
RASA3	22821	hgsc.bcm.edu;bcgsc.ca	37	13	114780788	114780788	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASA3	NM_007368	exon14	c.G1302A	p.V434V	GCGGTCCACATAC	.	59.0	4.0	81.0	0.0	.	658
RBM14	10432	hgsc.bcm.edu;bcgsc.ca	37	11	66392968	66392968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM14	NM_006328	exon2	c.C1621A	p.R541S	TCCTACCGCGGCC	.	126.0	6.0	88.0	0.0	.	92
RLTPR	146206	hgsc.bcm.edu;bcgsc.ca	37	16	67679452	67679452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RLTPR	NM_001013838	exon2	c.C50T	p.T17I	AGATCACCAGGTT	.	75.0	4.0	109.0	0.0	.	67
RMDN2	151393	hgsc.bcm.edu;bcgsc.ca	37	2	38178622	38178622	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_144713	exon2	c.T264A	p.A88A	AAATGCTTCCCCT	.	54.0	4.0	76.0	0.0	.	.
RNF112	7732	hgsc.bcm.edu;bcgsc.ca	37	17	19314770	19314770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF112	NM_007148	exon1	c.A49G	p.K17E	CTTGGCAAACGGG	.	28.0	4.0	35.0	0.0	.	92
RNF213	57674	hgsc.bcm.edu;bcgsc.ca	37	17	78341922	78341922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF213	NM_001256071	exon44	c.C12134A	p.P4045Q	TCTCTCCAGCTGT	.	110.0	5.0	138.0	0.0	.	577
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33855056	33855056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RYR3	NM_001243996	exon11	c.G991T	p.D331Y	AAATTAGACTCCA	.	86.0	30.0	120.0	0.0	.	520
SAA2-SAA4	100528017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18253136	18253136	+	Silent	SNP	C	C	A	rs201938371	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001199744	exon6	c.G540T	p.S180S	GGACTTCGAGTCC	.	111.0	28.0	169.0	0.0	C|0.999;T|0.000	.
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	13	23908202	23908202	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SACS	NM_014363	exon10	c.T9813C	p.V3271V	ATCAACAACAATG	.	84.0	4.0	98.0	0.0	.	298
SATB1	6304	hgsc.bcm.edu;bcgsc.ca	37	3	18393620	18393620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SATB1	NM_002971	exon10	c.A1643G	p.N548S	GAGAGGTTCTCCC	.	146.0	6.0	220.0	0.0	.	228
SCN4A	6329	hgsc.bcm.edu;bcgsc.ca	37	17	62022891	62022891	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCN4A	NM_000334	exon19	c.C3549A	p.A1183A	CTTGCCGGCAAAC	.	136.0	6.0	204.0	0.0	.	93
SEC16A	9919	hgsc.bcm.edu;bcgsc.ca	37	9	139370230	139370230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_014866	exon3	c.C1838A	p.P613Q	TTTACCGGTTCGA	.	51.0	4.0	84.0	0.0	.	.
SEC24C	9632	hgsc.bcm.edu;bcgsc.ca	37	10	75526220	75526220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEC24C	NM_004922	exon13	c.T1720C	p.S574P	GTTGTGTCTGATG	.	50.0	4.0	69.0	0.0	.	92
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49320786	49320786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SECISBP2L	NM_001193489	exon5	c.C758G	p.P253R	GCAGTAGGGTGGG	.	140.0	50.0	218.0	0.0	.	136
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48491823	48491823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.C89T	p.P30L	GTTTGTGGCAGGA	.	73.0	4.0	106.0	0.0	.	660
SENP1	29843	hgsc.bcm.edu;bcgsc.ca	37	12	48491866	48491866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.A46G	p.T16A	CTAAAGTCACTTC	.	81.0	4.0	117.0	0.0	.	660
SENP2	59343	hgsc.bcm.edu;bcgsc.ca	37	3	185316214	185316214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP2	NM_021627	exon3	c.C172A	p.Q58K	ATTCACCAAGTGA	.	175.0	7.0	186.0	0.0	.	658
SERPINB3	6317	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61324552	61324552	+	Missense_Mutation	SNP	C	C	A	rs150385073	byfrequency	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SERPINB3	NM_006919	exon6	c.G564T	p.K188N	AAATTTCTTCTCC	.	852.0	227.0	955.0	1.0	C|0.997;A|0.003	228
SETD1A	9739	hgsc.bcm.edu;bcgsc.ca	37	16	30976649	30976649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1A	NM_014712	exon7	c.A1586G	p.E529G	GGAGTGAGGTGCC	.	101.0	5.0	133.0	0.0	.	93
SETD8	387893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123880916	123880924	+	In_Frame_Del	DEL	TCGCAAACT	TCGCAAACT	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	TCGCAAACT	TCGCAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD8	NM_020382	exon5	c.534_542del	p.178_181del	ACAGAATCGCAAA	.	54.0	16.0	93.0	0.0	.	90
SGSM3	27352	hgsc.bcm.edu;bcgsc.ca	37	22	40803251	40803251	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM3	NM_015705	exon12	c.G1287T	p.T429T	GCAGACGGAACTG	.	94.0	6.0	113.0	0.0	.	494
SH3D19	152503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152060939	152060939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3D19	NM_001009555	exon14	c.G1513A	p.D505N	GGAAATCATGAAG	.	91.0	21.0	157.0	1.0	.	92
SHANK2	22941	hgsc.bcm.edu;bcgsc.ca	37	11	70332784	70332784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHANK2	NM_133266	exon10	c.T1850C	p.L617P	CCTGTGAGTGGGT	.	101.0	5.0	87.0	0.0	.	94
SHCBP1	79801	hgsc.bcm.edu;bcgsc.ca	37	16	46633834	46633834	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHCBP1	NM_024745	exon9	c.C1254A	p.G418G	GCCTTTGCCCCTC	.	70.0	4.0	110.0	0.0	.	154
SHMT2	6472	hgsc.bcm.edu;bcgsc.ca	37	12	57627867	57627867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHMT2	NM_005412	exon11	c.T1361C	p.I454T	TCAACATTGGCTT	.	94.0	5.0	98.0	0.0	.	91
SIK3	23387	hgsc.bcm.edu;bcgsc.ca	37	11	116746722	116746722	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SIK3	NM_025164	exon9	c.T925C	p.L309L	ATCTTAATGACTA	.	76.0	4.0	101.0	0.0	.	919
SLC12A5	57468	hgsc.bcm.edu;bcgsc.ca	37	20	44676618	44676618	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A5	NM_001134771	exon16	c.1977-2A>G	.	GCTCCCAGGGCAG	.	42.0	4.0	60.0	0.0	.	156
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73100204	73100204	+	Silent	SNP	G	G	C	rs141647560	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC16A5,brain,glioma,+2	SLC16A5	NM_001271765	exon6	c.G1293C	p.A431A	CGCGGCGGATGCC	.	133.0	39.0	176.0	0.0	G|0.999;A|0.001	90
SLC22A23	63027	hgsc.bcm.edu;bcgsc.ca	37	6	3416016	3416016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A23	NM_015482	exon2	c.G728A	p.G243D	AGGTAGCCAAAGA	.	104.0	5.0	174.0	0.0	.	23
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48669737	48669737	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A6	NM_022911	exon5	c.A526T	p.R176X	CATCTCTGGCTGT	.	262.0	109.0	340.0	0.0	.	946
SLC51A	200931	hgsc.bcm.edu;bcgsc.ca	37	3	195944788	195944788	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_152672	exon2	c.A114G	p.T38T	TCCCACAGCAGCC	.	43.0	5.0	85.0	0.0	.	.
SLC9C1	285335	hgsc.bcm.edu;bcgsc.ca	37	3	111985087	111985089	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_183061	exon8	c.874_876del	p.292_292del	TTACTCAAGAAGA	.	413.0	145.0	407.0	0.0	.	.
SLITRK2	84631	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144906050	144906050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLITRK2	NM_001144005	exon5	c.C2107A	p.Q703K	TACATGCAGAAGG	.	101.0	23.0	114.0	1.0	.	136
SMARCA2	6595	hgsc.bcm.edu;bcgsc.ca	37	9	2056807	2056807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCA2	NM_139045	exon7	c.A1309G	p.K437E	CAGCAGAAGATTG	.	65.0	4.0	107.0	0.0	.	653
SMARCC2	6601	broad.mit.edu;bcgsc.ca	37	12	56558092	56558093	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCC2	NM_003075	exon27	c.3563_3564insAC	p.L1188fs	CCTGGCAGTGGGC	.	28.0	8.0	48.0	0.0	.	229
SNAP91	9892	hgsc.bcm.edu;bcgsc.ca	37	6	84300973	84300973	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNAP91	NM_001242792	exon21	c.T1971C	p.S657S	AGCCTGAGATGCA	.	44.0	4.0	87.0	0.0	.	23
SNX12	29934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70282707	70282707	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX12	NM_001256185	exon3	c.C258T	p.S86S	TACCTTGCTATCT	.	87.0	19.0	128.0	0.0	.	226
SPACA3	124912	hgsc.bcm.edu;bcgsc.ca	37	17	31323887	31323887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPACA3	NM_173847	exon3	c.G370T	p.G124C	ACAAGCGGTTTCA	.	123.0	5.0	141.0	0.0	.	92
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172835323	172835323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA16	NM_031955	exon2	c.A199G	p.K67E	TGCCCTTTGTCAT	.	1219.0	190.0	696.0	0.0	.	94
SPATA5L1	79029	hgsc.bcm.edu;bcgsc.ca	37	15	45713246	45713246	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA5L1	NM_024063	exon8	c.T2100C	p.A700A	GGCTGCTTTGCTG	.	60.0	4.0	43.0	0.0	.	94
SPECC1	92521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	20107661	20107661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPECC1	NM_001033553	exon4	c.C299G	p.T100S	CAACAACTAAACG	.	63.0	26.0	102.0	0.0	.	639
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44876208	44876208	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPG11	NM_025137	exon30	c.T5670C	p.C1890C	ATGCACACAGCCA	.	98.0	5.0	102.0	0.0	.	95
SPN	6693	hgsc.bcm.edu;bcgsc.ca	37	16	29675060	29675060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPN	NM_001030288	exon2	c.T11C	p.L4P	CCACGCTTCTCCT	.	104.0	5.0	122.0	0.0	.	514
SPRR2A	6700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153029108	153029108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPRR2A	NM_005988	exon2	c.C104A	p.P35H	GGGCAGGGCTCAG	.	183.0	34.0	183.0	0.0	.	69
SRPX	8406	hgsc.bcm.edu;bcgsc.ca	37	X	38013812	38013812	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRPX	NM_006307	exon9	c.C1114A	p.R372R	TGTGTCGAAGATC	.	81.0	4.0	79.0	0.0	.	130
SRRM2	23524	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2812361	2812361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRRM2	NM_016333	exon11	c.G1832T	p.R611L	CAGCCCGGAGGGG	.	54.0	5.0	89.0	0.0	.	93
SRSF11	9295	hgsc.bcm.edu;bcgsc.ca	37	1	70710417	70710417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRSF11	NM_001190987	exon9	c.G851T	p.R284L	GGAGTCGGCGACG	.	115.0	5.0	129.0	0.0	.	227
STBD1	8987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77230621	77230621	+	Missense_Mutation	SNP	G	G	T	rs147970715	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STBD1	NM_003943	exon2	c.G545T	p.R182I	AGAACAGAGCTAA	.	128.0	34.0	150.0	1.0	G|0.999;A|0.001	69
STK38L	23012	hgsc.bcm.edu;bcgsc.ca	37	12	27475143	27475143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STK38L	NM_015000	exon13	c.C1243T	p.P415S	GACTTCCCTGAAT	.	58.0	5.0	75.0	0.0	.	980
STX19	415117	hgsc.bcm.edu;bcgsc.ca	37	3	93733245	93733245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STX19	NM_001001850	exon2	c.G869A	p.C290Y	CTACAGCATGGAC	.	84.0	5.0	99.0	0.0	.	90
SWI5	375757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131038431	131038431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001040011	exon1	c.C7T	p.R3W	ATGCAGCGGCGTG	.	49.0	17.0	61.0	1.0	.	.
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64641845	64641845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SYNE2	NM_182914	exon95	c.A17419G	p.S5807G	TTCCAGAGCACTG	.	113.0	5.0	88.0	0.0	.	164
TAF15	8148	hgsc.bcm.edu;bcgsc.ca	37	17	34171487	34171487	+	Missense_Mutation	SNP	G	G	T	rs71381481	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF15	NM_139215	exon15	c.G1184T	p.R395L	ATTTCCGGGGGAG	.	182.0	8.0	158.0	0.0	G|0.999;A|0.001	723
TAS2R43	259289	hgsc.bcm.edu;bcgsc.ca	37	12	11244577	11244577	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAS2R43	NM_176884	exon1	c.T252C	p.A84A	ATTATAAGCAGTA	.	107.0	6.0	152.0	0.0	.	1
TBC1D5	9779	hgsc.bcm.edu;bcgsc.ca	37	3	17333464	17333464	+	Missense_Mutation	SNP	C	C	A	rs143029277	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D5	NM_014744	exon15	c.G1168T	p.G390C	GAAGGCCGAGACA	.	72.0	4.0	103.0	0.0	C|1.000;T|0.000	91
TCF3	6929	hgsc.bcm.edu;bcgsc.ca	37	19	1611812	1611812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF3	NM_003200	exon19	c.G1859T	p.R620L	TCTCGCCGTTTCA	.	122.0	5.0	168.0	0.0	.	721
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67818045	67818045	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCIRG1	NM_006019	exon19	c.C2328A	p.I776I	CCCCATCTTTGCC	.	386.0	167.0	433.0	1.0	.	227
TDRD9	122402	hgsc.bcm.edu;bcgsc.ca	37	14	104470585	104470585	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TDRD9	NM_153046	exon14	c.A1494G	p.G498G	TGCTGGACGAGTG	.	91.0	4.0	137.0	0.0	.	70
TEKT1	83659	hgsc.bcm.edu;bcgsc.ca	37	17	6716342	6716342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEKT1	NM_053285	exon6	c.C660A	p.F220L	GCTGGAGAAGTCC	.	65.0	4.0	95.0	0.0	.	92
TENM2	57451	hgsc.bcm.edu;bcgsc.ca	37	5	167689229	167689229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001122679	exon29	c.G7712T	p.R2571L	AAGGGCGGGTGAC	.	89.0	6.0	115.0	0.0	.	.
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106155605	106155605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TET2	NM_001127208	exon3	c.A506T	p.H169L	CAACACATAACTG	.	149.0	43.0	220.0	0.0	.	4618
TEX14	56155	hgsc.bcm.edu;bcgsc.ca	37	17	56690838	56690838	+	Missense_Mutation	SNP	G	G	T	rs150820263	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TEX14,NS,carcinoma,+1	TEX14	NM_001201457	exon9	c.C967A	p.R323S	CAAGGCGGGTTTT	.	144.0	7.0	198.0	1.0	G|1.000;A|0.000	810
TGM2	7052	ucsc.edu;bcgsc.ca	37	20	36769692	36769692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TGM2	NM_198951	exon8	c.A1091G	p.K364R	TCGCTCTTCTCCT	.	32.0	4.0	65.0	0.0	.	155
TIAM1	7074	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	32639202	32639202	+	Silent	SNP	G	G	T	rs139712298	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIAM1	NM_003253	exon5	c.C87A	p.S29S	GCGCAGGGAGCGG	.	41.0	4.0	87.0	0.0	G|0.999;A|0.001	724
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75970580	75970580	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM30A	NM_018247	exon4	c.A501G	p.P167P	AGCAATTGGTTTG	.	189.0	69.0	263.0	0.0	.	90
TMPRSS11BNL	401136	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	69078095	69078095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001129907	exon2	c.C109A	p.H37N	GAAAATGAACAAG	.	306.0	89.0	437.0	0.0	.	.
TNRC6C	57690	hgsc.bcm.edu;bcgsc.ca	37	17	76046560	76046560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNRC6C	NM_018996	exon4	c.G1417A	p.D473N	AAAAATGACAATG	.	76.0	4.0	99.0	0.0	.	24
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32038106	32038106	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNXB	NM_019105	exon14	c.C5076A	p.L1692L	CCAGGAGAGGCGC	.	166.0	31.0	187.0	0.0	.	90
TOM1L2	146691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17801962	17801962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TOM1L2	NM_001033551	exon3	c.A164G	p.K55R	CGCTTCTTCAGGG	.	295.0	119.0	314.0	1.0	.	90
TPH2	121278	hgsc.bcm.edu;bcgsc.ca	37	12	72416258	72416258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPH2	NM_173353	exon9	c.C1148A	p.S383Y	TTTCCTCCATTGG	.	74.0	4.0	111.0	0.0	.	93
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160155954	160155954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM59	NM_173084	exon3	c.G1018C	p.V340L	GTATTACTGAAAT	.	271.0	85.0	299.0	0.0	.	658
TRIM66	9866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8642090	8642090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM66	NM_014818	exon16	c.G3047A	p.S1016N	GTCAGGCTGCGGC	.	132.0	34.0	167.0	0.0	.	68
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135779080	135779080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSC1	NM_000368	exon17	c.G2166T	p.K722N	GATCACCTTGCGG	.	82.0	33.0	94.0	0.0	.	1906
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	18	72999514	72999514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSHZ1	NM_005786	exon2	c.C2017A	p.P673T	ACAGAGCCTCTCA	.	64.0	4.0	85.0	0.0	.	90
TTC40	54777	hgsc.bcm.edu;bcgsc.ca	37	10	134694527	134694527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001200049	exon28	c.A3637G	p.M1213V	ACTCCATCTCAGG	.	51.0	4.0	91.0	0.0	.	.
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179577619	179577619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTN	NM_001267550	exon94	c.A27133G	p.T9045A	GAGGTGTTCCTTT	.	84.0	4.0	59.0	0.0	.	636
TUFM	7284	hgsc.bcm.edu;bcgsc.ca	37	16	28856082	28856082	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TUFM,NS,carcinoma,-2	TUFM	NM_003321	exon5	c.C621A	p.T207T	AAACTCGGTGAGC	.	100.0	4.0	126.0	0.0	.	91
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19433073	19433073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon83	c.G12383T	p.W4128L	CGCAGCCAGTTGT	.	30.0	4.0	46.0	0.0	.	612
UBR4	23352	hgsc.bcm.edu;bcgsc.ca	37	1	19501462	19501462	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon21	c.C2839A	p.R947R	CAAGTCGGTTCAA	.	109.0	5.0	133.0	0.0	.	612
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19407897	19407897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon103	c.G15179A	p.R5060Q	AGCCTCCGCAAGA	.	103.0	11.0	94.0	0.0	.	612
UBXN6	80700	hgsc.bcm.edu;bcgsc.ca	37	19	4448329	4448329	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBXN6	NM_025241	exon5	c.G525T	p.V175V	GGTGTCCACACCC	.	65.0	4.0	71.0	0.0	.	90
UNC79	57578	hgsc.bcm.edu;bcgsc.ca	37	14	94158258	94158258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020818	exon47	c.C7022A	p.P2341H	TGACACCCAGCAT	.	138.0	8.0	173.0	0.0	.	.
USP20	10868	hgsc.bcm.edu;bcgsc.ca	37	9	132642472	132642472	+	Missense_Mutation	SNP	C	C	A	rs200854092	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP20	NM_001008563	exon25	c.C2665A	p.R889S	GCCATCCGCCAGA	.	50.0	4.0	112.0	0.0	C|0.999;T|0.000	658
USP31	57478	hgsc.bcm.edu;bcgsc.ca	37	16	23091273	23091273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon13	c.T2170C	p.Y724H	CTGTGTAGTGCCC	.	75.0	4.0	116.0	0.0	.	663
USP31	57478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23080459	23080459	+	Silent	SNP	G	G	T	rs201814190	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon16	c.C2967A	p.I989I	ATAAGCGATCTGA	.	27.0	4.0	50.0	0.0	G|0.999;A|0.000	663
USP39	10713	broad.mit.edu;ucsc.edu	37	2	85843340	85843340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP39	NM_001256725	exon1	c.G22A	p.E8K	AAGCGGGAGTCTC	.	68.0	12.0	53.0	2.0	.	658
USP7	7874	hgsc.bcm.edu;bcgsc.ca	37	16	9015082	9015082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP7	NM_003470	exon4	c.C454A	p.R152S	TACGACGACTGAA	.	134.0	7.0	148.0	0.0	.	661
VILL	50853	hgsc.bcm.edu;bcgsc.ca	37	3	38044030	38044030	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VILL	NM_015873	exon13	c.G1623T	p.L541L	CTTGCTGGTCACA	.	119.0	7.0	87.0	0.0	.	90
VNN2	8875	hgsc.bcm.edu;bcgsc.ca	37	6	133071001	133071001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VNN2	NM_004665	exon6	c.T1204C	p.C402R	GTGTGCAGACCTA	.	93.0	4.0	115.0	0.0	.	90
VPS13C	54832	hgsc.bcm.edu;bcgsc.ca	37	15	62202491	62202491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13C	NM_020821	exon64	c.G8729T	p.W2910L	TCTGGCCAAAATG	.	78.0	4.0	100.0	0.0	.	92
VPS13D	55187	hgsc.bcm.edu;bcgsc.ca	37	1	12516140	12516140	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13D	NM_015378	exon66	c.C12420A	p.A4140A	TGCAGCCACAAGT	.	62.0	4.0	84.0	0.0	.	95
VPS25	84313	hgsc.bcm.edu;bcgsc.ca	37	17	40928289	40928289	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS25	NM_032353	exon5	c.C369A	p.S123S	CAACTCCGTCTTT	.	121.0	5.0	174.0	0.0	.	90
VPS33B	26276	hgsc.bcm.edu;bcgsc.ca	37	15	91549273	91549273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS33B	NM_018668	exon12	c.G869A	p.R290Q	TCGTTCCGAATCT	.	110.0	5.0	113.0	0.0	.	92
VPS37A	137492	hgsc.bcm.edu;bcgsc.ca	37	8	17126365	17126365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS37A	NM_152415	exon4	c.T316C	p.F106L	TTTCAGTTTACAA	.	79.0	4.0	117.0	0.0	.	90
WASF1	8936	hgsc.bcm.edu;bcgsc.ca	37	6	110426738	110426738	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WASF1	NM_001024935	exon7	c.A585G	p.R195R	AGGTGCTCTTGGC	.	95.0	4.0	103.0	0.0	.	90
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70880904	70880904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WBSCR17	NM_022479	exon4	c.G619A	p.V207I	GAGTATGTCCACA	.	86.0	21.0	154.0	0.0	.	96
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	54349915	54349915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR7	NM_052834	exon5	c.351delC	p.Y117fs	GTTCTACCAGTTC	.	167.0	41.0	223.0	0.0	.	93
WDTC1	23038	hgsc.bcm.edu;bcgsc.ca	37	1	27627864	27627864	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDTC1	NM_001276252	exon13	c.A1380G	p.K460K	CTTCAAAGGGAAA	.	74.0	4.0	116.0	0.0	.	91
WFIKKN2	124857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48913333	48913333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WFIKKN2	NM_175575	exon1	c.G35A	p.R12H	GGTCTCGCTGGGA	.	110.0	41.0	127.0	0.0	.	93
XIRP1	165904	hgsc.bcm.edu;bcgsc.ca	37	3	39229162	39229162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XIRP1	NM_001198621	exon2	c.A1775G	p.Q592R	ATGGTCTGCACAT	.	134.0	8.0	189.0	0.0	.	158
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28167437	28167437	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XPO6	NM_015171	exon7	c.A1055T	p.N352I	TGGGCATTGTTAT	.	544.0	173.0	773.0	0.0	.	227
ZDHHC1	29800	hgsc.bcm.edu;bcgsc.ca	37	16	67432186	67432186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZDHHC1	NM_013304	exon8	c.C856A	p.R286S	GTGGGCGGTGCTG	.	61.0	4.0	78.0	0.0	.	90
ZIC3	7547	hgsc.bcm.edu;bcgsc.ca	37	X	136649847	136649847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZIC3	NM_003413	exon1	c.C997A	p.P333T	CCCTTCCCGGGCT	.	125.0	5.0	199.0	0.0	.	195
ZNF107	51427	hgsc.bcm.edu;bcgsc.ca	37	7	64166707	64166707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF107	NM_016220	exon7	c.T25C	p.S9P	GTAATGTCTTTTC	.	63.0	4.0	78.0	0.0	.	69
ZNF132	7691	hgsc.bcm.edu;bcgsc.ca	37	19	58945140	58945140	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF132	NM_003433	exon3	c.T1671C	p.T557T	AATGAGAGTGGAG	.	91.0	4.0	166.0	0.0	.	92
ZNF229	7772	hgsc.bcm.edu;bcgsc.ca	37	19	44934658	44934658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF229	NM_014518	exon6	c.C298A	p.H100N	CTTTGTGTGAAAA	.	95.0	4.0	118.0	0.0	.	94
ZNF248	57209	hgsc.bcm.edu;bcgsc.ca	37	10	38126943	38126943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF248	NM_001267606	exon2	c.C112A	p.L38M	TTTCCAGGATCAC	.	96.0	4.0	148.0	0.0	.	91
ZNF33B	7582	hgsc.bcm.edu;bcgsc.ca	37	10	43088543	43088543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF33B	NM_006955	exon5	c.T1855C	p.C619R	TCTGGCAGAAGGT	.	121.0	5.0	129.0	0.0	.	90
ZNF341	84905	hgsc.bcm.edu;bcgsc.ca	37	20	32328755	32328755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF341	NM_032819	exon2	c.C79A	p.Q27K	GATGGCCAAGGAG	.	55.0	4.0	105.0	0.0	.	92
ZNF346	23567	hgsc.bcm.edu;bcgsc.ca	37	5	176477805	176477805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF346	NM_012279	exon5	c.C571T	p.H191Y	CTCTGCCATGCAA	.	71.0	4.0	129.0	0.0	.	90
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	178506014	178506014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF354C	NM_014594	exon5	c.G581T	p.G194V	CATTTGGGAAAGA	.	70.0	5.0	71.0	0.0	.	91
ZNF429	353088	hgsc.bcm.edu;bcgsc.ca	37	19	21712459	21712459	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF429	NM_001001415	exon2	c.4-1G>T	.	GTTTCAGGGACCA	.	59.0	4.0	109.0	0.0	.	516
ZNF521	25925	hgsc.bcm.edu;bcgsc.ca	37	18	22806400	22806400	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF521,NS,carcinoma,-2	ZNF521	NM_015461	exon4	c.A1482G	p.E494E	GATGTGTTCCTGA	.	135.0	6.0	183.0	0.0	.	275
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37677107	37677107	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF585B	NM_152279	exon5	c.G1332A	p.G444G	CAATTTCCCACAG	.	198.0	61.0	243.0	0.0	.	91
ZNF655	79027	hgsc.bcm.edu;bcgsc.ca	37	7	99169920	99169920	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF655	NM_001085368	exon4	c.G294T	p.S98S	AATTTCGGAAGAA	.	123.0	5.0	64.0	0.0	.	91
ZNF675	171392	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23836432	23836432	+	Silent	SNP	G	G	T	rs199957959	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF675	NM_138330	exon4	c.C1303A	p.R435R	AGGATCGGTTAAA	.	33.0	4.0	54.0	0.0	G|0.999;A|0.001	228
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF75A	NM_153028	exon6	c.C521G	p.S174C	TTAGCTCTGACCT	.	199.0	62.0	220.0	0.0	.	153
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102805186	102805186	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF839	NM_018335	exon6	c.C1693A	p.R565R	TTCCTACGGAAGA	.	149.0	35.0	217.0	0.0	.	91
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca	37	19	52569527	52569527	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001136499	exon7	c.C1608A	p.T536T	CTCTCCGGTATGA	.	79.0	4.0	74.0	0.0	.	.
ZNF841	284371	hgsc.bcm.edu;bcgsc.ca	37	19	52570470	52570470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001136499	exon7	c.C665A	p.P222Q	TGAAGTGGTGAAG	.	76.0	4.0	103.0	0.0	.	.
ZNF85	7639	hgsc.bcm.edu;bcgsc.ca	37	19	21132473	21132473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF85	NM_001256171	exon5	c.C1243A	p.L415I	TCACACCTTACTA	.	72.0	4.0	82.0	0.0	.	514
