Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AADAT	51166	hgsc.bcm.edu;bcgsc.ca	37	4	170999725	170999725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AADAT	NM_182662	exon5	c.A379G	p.M127V	TGATCATTTCAAA	.	67.0	4.0	102.0	0.0	.	90
ABCA12	26154	hgsc.bcm.edu;bcgsc.ca	37	2	215797448	215797448	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA12	NM_173076	exon53	c.C7698A	p.A2566A	GTCTTTGGCAAAG	.	96.0	4.0	106.0	0.0	.	99
ABCA13	154664	hgsc.bcm.edu;bcgsc.ca	37	7	48312768	48312768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA13	NM_152701	exon17	c.A3505G	p.M1169V	TTTGACATGAATG	.	97.0	5.0	113.0	0.0	.	521
ABCA4	24	hgsc.bcm.edu;bcgsc.ca	37	1	94517230	94517230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA4	NM_000350	exon17	c.G2612T	p.W871L	AAGTACCAAGGAA	.	102.0	5.0	154.0	0.0	.	162
ADAM18	8749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39495084	39495084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM18	NM_014237	exon9	c.T689C	p.I230T	CTGTTATACTGTC	.	182.0	81.0	173.0	0.0	.	228
ADAM20	8748	hgsc.bcm.edu;bcgsc.ca	37	14	70989894	70989894	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM20	NM_003814	exon2	c.T1731C	p.S577S	ACTCTGAGATGCA	.	85.0	5.0	125.0	0.0	.	226
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28296553	28296553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAMTS5	NM_007038	exon8	c.G2612T	p.G871V	TGTGATCCCACTT	.	133.0	51.0	104.0	0.0	.	229
AGMAT	79814	hgsc.bcm.edu;bcgsc.ca	37	1	15901266	15901266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGMAT	NM_024758	exon6	c.C971A	p.P324Q	TCATACGGTGGTG	.	64.0	4.0	83.0	0.0	.	91
AGO3	192669	hgsc.bcm.edu;bcgsc.ca	37	1	36439085	36439085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_024852	exon5	c.A631G	p.M211V	CCTGCCATGTGGA	.	139.0	6.0	236.0	0.0	.	.
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86286858	86286858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AKAP13	NM_006738	exon36	c.A8206G	p.N2736D	AAAAGGAACAGCA	.	78.0	4.0	129.0	0.0	.	258
ANK2	287	hgsc.bcm.edu;bcgsc.ca	37	4	114279607	114279607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANK2	NM_001148	exon38	c.C9833A	p.P3278Q	CTTCCCCAGAAGA	.	116.0	6.0	146.0	0.0	.	583
ANKLE2	23141	hgsc.bcm.edu;bcgsc.ca	37	12	133313525	133313525	+	Missense_Mutation	SNP	G	G	T	rs201586661	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKLE2	NM_015114	exon8	c.C1547A	p.P516Q	AGTACCGGGTCTC	.	76.0	4.0	64.0	0.0	.	68
ANXA13	312	hgsc.bcm.edu;bcgsc.ca	37	8	124693533	124693533	+	Missense_Mutation	SNP	G	G	T	rs201212750	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANXA13	NM_001003954	exon12	c.C1021A	p.R341S	CTGAGCGAACCAT	.	124.0	5.0	153.0	0.0	G|0.999;A|0.000	93
AP1AR	55435	hgsc.bcm.edu;bcgsc.ca	37	4	113174413	113174413	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP1AR	NM_001128426	exon2	c.132+1G>A	.	ATAGAGGTAAGTA	.	83.0	5.0	126.0	0.0	.	90
AP3D1	8943	hgsc.bcm.edu;bcgsc.ca	37	19	2138617	2138617	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP3D1	NM_003938	exon3	c.192+1G>A	.	CACTTACATACGT	.	101.0	7.0	72.0	0.0	.	90
AR	367	hgsc.bcm.edu;bcgsc.ca	37	X	66766306	66766306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AR	NM_000044	exon1	c.A1318G	p.T440A	CTCTTCACAGCCG	.	43.0	4.0	45.0	0.0	.	661
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47430811	47430811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARAF	NM_001256196	exon16	c.T1785A	p.D595E	GGCCGATGAGTTG	.	146.0	73.0	137.0	0.0	.	1557
ARHGAP20	57569	hgsc.bcm.edu;bcgsc.ca	37	11	110479748	110479748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGAP20	NM_020809	exon9	c.G735T	p.W245C	ATTGACCCACAAC	.	102.0	5.0	124.0	0.0	.	230
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106505	27106506	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARID1A	NM_006015	exon20	c.6116_6117insT	p.Q2039fs	AGGACCAAGGGGT	.	171.0	126.0	276.0	0.0	.	584
ART1	417	hgsc.bcm.edu;broad.mit.edu	37	11	3681383	3681383	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ART1	NM_004314	exon3	c.C634T	p.Q212X	GCCCAGCAGTTTG	.	138.0	6.0	124.0	0.0	.	90
ASIC3	9311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150747908	150747908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020322	exon4	c.C877G	p.P293A	TATGAGCCAGAGC	.	66.0	15.0	64.0	0.0	.	.
ATP2A1	487	hgsc.bcm.edu;bcgsc.ca	37	16	28914131	28914131	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A1	NM_004320	exon19	c.C2643A	p.T881T	CAACACCCACTTT	.	121.0	5.0	160.0	0.0	.	93
ATP2A2	488	hgsc.bcm.edu;bcgsc.ca	37	12	110729905	110729905	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A2	NM_001681	exon4	c.C300A	p.A100A	AGTAGCCAATGCA	.	200.0	8.0	217.0	0.0	.	94
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26273474	26273474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP8A2	NM_016529	exon25	c.T2375C	p.I792T	CGGTCATATGCTG	.	90.0	48.0	91.0	0.0	.	138
ATR	545	hgsc.bcm.edu;bcgsc.ca	37	3	142281918	142281918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATR	NM_001184	exon4	c.G326T	p.R109L	GCAATCCGCAGAA	.	83.0	4.0	87.0	0.0	.	1139
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104130448	104130448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAAT	NM_001127610	exon3	c.T623C	p.L208S	TATTCCAAATCTG	.	142.0	65.0	118.0	0.0	.	228
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;bcgsc.ca	37	14	23794468	23794468	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001199864	exon9	c.A975G	p.R325R	GGCTAGAGCGACA	.	109.0	5.0	201.0	0.0	.	.
BHLHA15	168620	hgsc.bcm.edu;bcgsc.ca	37	7	97842082	97842082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BHLHA15	NM_177455	exon1	c.A461G	p.Q154R	ACTACCAGCAGCA	.	73.0	4.0	102.0	0.0	.	90
BLM	641	hgsc.bcm.edu;bcgsc.ca	37	15	91304196	91304196	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BLM	NM_000057	exon7	c.A1593G	p.K531K	TGTGAAAGATCAG	.	93.0	4.0	112.0	0.0	.	664
BMPER	168667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34101636	34101636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BMPER	NM_133468	exon12	c.G1055T	p.G352V	GAAAAGGATGCTG	.	102.0	44.0	151.0	1.0	.	92
BOD1L1	259282	hgsc.bcm.edu;bcgsc.ca	37	4	13602619	13602619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_148894	exon10	c.A5905G	p.T1969A	CTGGTGTCACTTC	.	63.0	4.0	99.0	0.0	.	.
BTRC	8945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103281409	103281409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BTRC	NM_033637	exon5	c.A338T	p.N113I	TTGCCAATGGCAC	.	148.0	53.0	99.0	0.0	.	659
C10orf12	26148	hgsc.bcm.edu;bcgsc.ca	37	10	98741962	98741962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C10orf12	NM_015652	exon1	c.T815C	p.V272A	GAGACGTTTCACC	.	108.0	6.0	86.0	0.0	.	92
C18orf42	642597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5145618	5145618	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145194	exon2	c.C153T	p.N51N	GTCCCGGTTGTCA	.	257.0	145.0	283.0	2.0	.	.
C2orf16	84226	hgsc.bcm.edu;bcgsc.ca	37	2	27803792	27803792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf16	NM_032266	exon1	c.T4353C	p.P1451P	CAGACCTCTTCGA	.	73.0	4.0	68.0	0.0	.	67
C2orf81	388963	hgsc.bcm.edu;bcgsc.ca	37	2	74643206	74643206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145054	exon2	c.G190T	p.G64W	TGTCCCCTACGAC	.	64.0	4.0	82.0	0.0	.	.
CACNA1I	8911	hgsc.bcm.edu;bcgsc.ca	37	22	39994207	39994207	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CACNA1I	NM_001003406	exon2	c.T288C	p.L96L	GACACTTGGCATG	.	98.0	4.0	140.0	0.0	.	135
CADM2	253559	hgsc.bcm.edu;bcgsc.ca	37	3	85932563	85932563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.361delA	p.K121fs	CCTGTCAAAACTT	.	126.0	29.0	161.0	0.0	.	228
CADM2	253559	hgsc.bcm.edu;bcgsc.ca	37	3	85932567	85932567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.C365T	p.T122I	TCAAAACTTCCAA	.	121.0	31.0	157.0	0.0	.	228
CAND1	55832	hgsc.bcm.edu;bcgsc.ca	37	12	67699020	67699020	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAND1	NM_018448	exon10	c.G1572T	p.V524V	TCCAGTGGTGGCT	.	173.0	7.0	163.0	0.0	.	516
CBLN1	869	hgsc.bcm.edu;bcgsc.ca	37	16	49313350	49313350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CBLN1	NM_004352	exon3	c.T547C	p.S183P	AGGTCGAGTACTT	.	133.0	6.0	214.0	0.0	.	90
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	4	77255317	77255317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC158	NM_001042784	exon18	c.T2668C	p.S890P	TTGTAGAGTGCTG	.	124.0	5.0	174.0	0.0	.	96
CCDC19	25790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159846466	159846466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC19	NM_012337	exon10	c.G1232A	p.R411Q	TTCTTCCGCGCAT	.	1191.0	239.0	851.0	1.0	.	91
CCIN	881	hgsc.bcm.edu;bcgsc.ca	37	9	36170794	36170794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCIN	NM_005893	exon1	c.G1295T	p.R432L	CTGGACGGTGCTT	.	92.0	5.0	86.0	0.0	.	92
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91230222	91230222	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145065	exon2	c.T787C	p.L263L	TTAGCCTTGACTG	.	31.0	4.0	46.0	0.0	.	.
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17072001	17072001	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCT8L2	NM_014406	exon1	c.G1440T	p.V480V	AGTTCCCACACCC	.	155.0	113.0	285.0	0.0	.	69
CDC42	998	hgsc.bcm.edu;bcgsc.ca	37	1	22417973	22417973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDC42	NM_001791	exon6	c.C539T	p.P180L	AGCCTCCAGAACC	.	77.0	4.0	167.0	0.0	.	1084
CDHR3	222256	hgsc.bcm.edu;bcgsc.ca	37	7	105621574	105621574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDHR3	NM_152750	exon3	c.C410A	p.A137E	ACTTGGCAGAAGG	.	83.0	4.0	128.0	0.0	.	23
CDK14	5218	hgsc.bcm.edu;bcgsc.ca	37	7	90747440	90747440	+	Missense_Mutation	SNP	G	G	T	rs74839397	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDK14	NM_012395	exon13	c.G1301T	p.R434L	GCATGCGGGCCTT	.	93.0	4.0	115.0	0.0	G|0.999;A|0.001	970
CDRT15	146822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	14139241	14139241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDRT15	NM_001007530	exon3	c.T499C	p.W167R	GCATCCATGCCTG	.	357.0	81.0	311.0	0.0	.	90
CDS1	1040	hgsc.bcm.edu;bcgsc.ca	37	4	85562071	85562071	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDS1	NM_001263	exon10	c.A960G	p.E320E	GACAGAATGTGAG	.	98.0	4.0	167.0	0.0	.	155
CELSR2	1952	hgsc.bcm.edu;bcgsc.ca	37	1	109794818	109794818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CELSR2	NM_001408	exon1	c.A2117G	p.N706S	ACGCCAACACCCA	.	61.0	4.0	99.0	0.0	.	526
CEP192	55125	hgsc.bcm.edu;bcgsc.ca	37	18	13015339	13015339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP192	NM_032142	exon6	c.G532T	p.D178Y	GTGCTTGATGCTG	.	89.0	4.0	89.0	0.0	.	27
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34067549	34067549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP250	NM_007186	exon19	c.G2367T	p.Q789H	GGGGCAGCTGGAG	.	127.0	41.0	170.0	0.0	.	27
CEP350	9857	hgsc.bcm.edu;bcgsc.ca	37	1	180013222	180013222	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP350	NM_014810	exon21	c.A4536G	p.E1512E	TAAAGAAGGGACC	.	96.0	5.0	70.0	0.0	.	26
CEP55	55165	hgsc.bcm.edu;bcgsc.ca	37	10	95275260	95275260	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP55	NM_001127182	exon5	c.G627T	p.T209T	GAAAACGGAAACA	.	148.0	6.0	111.0	0.0	.	90
CHADL	150356	hgsc.bcm.edu;bcgsc.ca	37	22	41634867	41634867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHADL	NM_138481	exon3	c.A209G	p.Q70R	TTGCCCTGCAGGT	.	56.0	4.0	89.0	0.0	.	68
CHD7	55636	hgsc.bcm.edu;bcgsc.ca	37	8	61757431	61757431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD7	NM_017780	exon22	c.G4859T	p.R1620L	GGGGACGGTGGAC	.	110.0	5.0	70.0	0.0	.	141
CHSY1	22856	hgsc.bcm.edu;bcgsc.ca	37	15	101718547	101718547	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHSY1	NM_014918	exon3	c.T1455C	p.H485H	CTCCTCATGCTCC	.	81.0	4.0	93.0	0.0	.	90
CLCA2	9635	hgsc.bcm.edu;bcgsc.ca	37	1	86900325	86900325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCA2	NM_006536	exon6	c.C869T	p.P290L	GCTTTCCCATGAA	.	89.0	4.0	131.0	0.0	.	155
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143016896	143016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCN1	NM_000083	exon2	c.G229A	p.G77R	GACATAGGGATGC	.	88.0	39.0	91.0	0.0	.	156
COL4A4	1286	hgsc.bcm.edu;bcgsc.ca	37	2	227895215	227895215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL4A4	NM_000092	exon41	c.C3917T	p.P1306L	GGGCCTGGTGGGC	.	72.0	4.0	77.0	0.0	.	142
COL5A3	50509	hgsc.bcm.edu;bcgsc.ca	37	19	10106242	10106242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL5A3	NM_015719	exon16	c.A1585G	p.M529V	TCACCATCTTGCC	.	80.0	4.0	55.0	0.0	.	99
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48625362	48625362	+	Silent	SNP	T	T	C	rs201566458		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL7A1	NM_000094	exon21	c.A2721G	p.E907E	GGACTGTTCCTGG	.	69.0	4.0	60.0	0.0	.	160
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75221502	75221502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COX5A	NM_004255	exon2	c.A172G	p.T58A	AGTATGTTACCCA	.	121.0	39.0	183.0	0.0	.	90
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207890960	207890960	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CR1L	NM_175710	exon11	c.C1566T	p.I522I	CACCATCCGCCGC	.	546.0	77.0	361.0	0.0	.	46
CRB2	286204	hgsc.bcm.edu;bcgsc.ca	37	9	126133645	126133645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRB2	NM_173689	exon8	c.G2224T	p.G742W	GACCTGGGGCAGC	.	143.0	6.0	124.0	0.0	.	91
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2949044	2949044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSMD1	NM_033225	exon48	c.T7279C	p.Y2427H	CTGCATAGCGAAT	.	76.0	4.0	92.0	0.0	.	86
CSPG4	1464	hgsc.bcm.edu;bcgsc.ca	37	15	75982391	75982391	+	Missense_Mutation	SNP	G	G	T	rs200187536	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSPG4	NM_001897	exon3	c.C1015A	p.R339S	CCAGGCGGTGTTC	.	62.0	4.0	63.0	0.0	G|0.999;A|0.001	229
CSRP2	1466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77253334	77253334	+	Silent	SNP	A	A	G	rs202057442		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSRP2	NM_001321	exon5	c.T498C	p.Y166Y	TTTACAATAGATT	.	332.0	161.0	333.0	1.0	A|0.999;G|0.001	91
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17142090	17142090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CUBN	NM_001081	exon14	c.G1679C	p.S560T	TTGTCACTGCTGA	.	264.0	116.0	205.0	0.0	.	166
CXADR	1525	hgsc.bcm.edu;bcgsc.ca	37	21	18919456	18919456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXADR	NM_001207065	exon2	c.C155A	p.P52Q	AGGGACCGCTGGA	.	57.0	4.0	67.0	0.0	.	227
CXorf22	170063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	35971756	35971756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXorf22	NM_152632	exon7	c.A1094G	p.D365G	GACAGGACTATGC	.	362.0	122.0	433.0	2.0	.	131
CYP4A11	1579	hgsc.bcm.edu;bcgsc.ca	37	1	47406949	47406949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP4A11	NM_000778	exon1	c.T157C	p.C53R	GAGGGCACGGGAA	.	71.0	4.0	159.0	0.0	.	94
DACH2	117154	hgsc.bcm.edu;bcgsc.ca	37	X	85404070	85404070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DACH2	NM_001139514	exon1	c.G446T	p.R149M	TCACCAGGAAAGA	.	59.0	4.0	61.0	0.0	.	136
DALRD3	55152	hgsc.bcm.edu;bcgsc.ca	37	3	49053492	49053492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DALRD3	NM_001009996	exon10	c.A1357G	p.I453V	GGAGGATACTGTT	.	88.0	4.0	93.0	0.0	.	90
DAPP1	27071	hgsc.bcm.edu;bcgsc.ca	37	4	100756811	100756811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DAPP1	NM_014395	exon2	c.G133T	p.A45S	CATGCTGCTGAAG	.	100.0	5.0	124.0	0.0	.	93
DCAF7	10238	hgsc.bcm.edu;bcgsc.ca	37	17	61666468	61666468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCAF7	NM_005828	exon8	c.G963T	p.W321C	GCAGTGGGCATCA	.	124.0	5.0	107.0	0.0	.	91
DCDC5	100506627	hgsc.bcm.edu;bcgsc.ca	37	11	30938424	30938424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCDC5	NM_020869	exon7	c.A766G	p.K256E	TGTGTTTCTTCTG	.	146.0	6.0	152.0	0.0	.	23
DCUN1D4	23142	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	52740446	52740446	+	Missense_Mutation	SNP	G	G	T	rs142966675		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	DCUN1D4,NS,carcinoma,0	DCUN1D4	NM_015115	exon4	c.G146T	p.R49L	GTCTGCGGTCTTG	.	32.0	4.0	39.0	0.0	G|1.000;T|0.000	92
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90023996	90023996	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEF8	NM_207514	exon5	c.C483A	p.P161P	GCTGCCCGAGCAG	.	273.0	232.0	421.0	0.0	.	68
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	153906108	153906108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DENND4B	NM_014856	exon20	c.C3181T	p.L1061F	GTTGGAGGCGGGC	.	379.0	219.0	220.0	0.0	.	69
DEPDC5	9681	hgsc.bcm.edu;bcgsc.ca	37	22	32217607	32217607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPDC5	NM_001136029	exon22	c.C1990T	p.H664Y	GCATATCATGAAG	.	74.0	4.0	88.0	0.0	.	519
DEPTOR	64798	hgsc.bcm.edu;bcgsc.ca	37	8	120977517	120977517	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPTOR	NM_022783	exon4	c.A471G	p.E157E	GGAGGAAGGGGTC	.	86.0	4.0	72.0	0.0	.	227
DHX9	1660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182847265	182847265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DHX9	NM_001357	exon20	c.C2308G	p.P770A	GTACGGCCTGGAT	.	256.0	27.0	174.0	1.0	.	92
DLG4	1742	hgsc.bcm.edu;bcgsc.ca	37	17	7097797	7097797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG4	NM_001365	exon14	c.A1448G	p.D483G	GTCTTGTCGTAAT	.	56.0	4.0	56.0	0.0	.	24
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	32715997	32715997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DMD	NM_004006	exon9	c.T950A	p.F317Y	GAAGGAAATGGGC	.	177.0	88.0	232.0	2.0	.	265
DNAH9	1770	hgsc.bcm.edu;bcgsc.ca	37	17	11661007	11661007	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH9	NM_001372	exon35	c.C6993T	p.T2331T	CAGAACCAGGTAG	.	143.0	6.0	148.0	0.0	.	168
DNAJB5	25822	hgsc.bcm.edu;bcgsc.ca	37	9	34990809	34990809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJB5	NM_001135004	exon2	c.G308T	p.R103L	AGTTTCGGTAAGT	.	59.0	4.0	69.0	0.0	.	226
DNAJC8	22826	hgsc.bcm.edu;bcgsc.ca	37	1	28536549	28536549	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJC8	NM_014280	exon5	c.G333A	p.L111L	CTGATCCAGTAGC	.	74.0	4.0	132.0	0.0	.	90
DOCK3	1795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51297588	51297588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK3	NM_004947	exon23	c.C2186A	p.A729D	TTCAGGCCTTGGA	.	182.0	8.0	193.0	0.0	.	22
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103152947	103152947	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DYNC2H1	NM_001080463	exon73	c.T10822C	p.L3608L	GACATGTTACGGA	.	76.0	4.0	106.0	0.0	.	68
EFCAB14	9813	hgsc.bcm.edu;bcgsc.ca	37	1	47149060	47149060	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014774	exon10	c.G1224A	p.L408L	TTTTGGCAATGCT	.	59.0	4.0	106.0	0.0	.	.
EGFR	1956	hgsc.bcm.edu;bcgsc.ca	37	7	55224338	55224338	+	Silent	SNP	G	G	T	rs2302536	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EGFR	NM_201283	exon9	c.G1119T	p.P373P	CCTGCCGGTGGCA	.	120.0	5.0	162.0	0.0	G|0.997;A|0.003	44910
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	79404924	79404924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELTD1	NM_022159	exon4	c.C345A	p.C115X	TAAATGGCAGTTT	.	278.0	219.0	450.0	1.0	.	24
EML3	256364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62370651	62370651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML3	NM_153265	exon20	c.T2326C	p.Y776H	AGGTGTAGGTAGC	.	62.0	4.0	51.0	0.0	.	91
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14765979	14765979	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EMR3	NM_032571	exon7	c.394-2A>T	.	TGCAGCTTTGAAG	.	309.0	135.0	259.0	1.0	.	528
ENGASE	64772	hgsc.bcm.edu;bcgsc.ca	37	17	77073755	77073755	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ENGASE	NM_001042573	exon3	c.T225C	p.Y75Y	ATATTATGACAAG	.	78.0	4.0	61.0	0.0	.	91
ERC2	26059	hgsc.bcm.edu;bcgsc.ca	37	3	56207475	56207475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERC2	NM_015576	exon4	c.A1148G	p.K383R	CCTACCTTCATTT	.	93.0	4.0	89.0	0.0	.	24
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128051105	128051105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERCC3	NM_000122	exon2	c.C218T	p.S73F	GGCCTGGAGGTGT	.	172.0	54.0	174.0	0.0	.	723
ESYT1	23344	hgsc.bcm.edu;bcgsc.ca	37	12	56530663	56530663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ESYT1	NM_001184796	exon16	c.A1798G	p.K600E	TATATGAAACTAG	.	77.0	4.0	88.0	0.0	.	95
F5	2153	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169515769	169515769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	F5	NM_000130	exon11	c.A1673G	p.Y558C	TCAAGGTACCAGC	.	239.0	22.0	153.0	1.0	.	157
FAM111B	374393	hgsc.bcm.edu;bcgsc.ca	37	11	58877115	58877115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM111B	NM_198947	exon3	c.C17A	p.T6N	TGAAGACTGAAGA	.	64.0	4.0	61.0	0.0	.	92
FAM188A	80013	hgsc.bcm.edu;bcgsc.ca	37	10	15883432	15883432	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM188A	NM_024948	exon4	c.A402G	p.E134E	AGAATGTTCCACT	.	89.0	6.0	71.0	0.0	.	228
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56658883	56658883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001112736	exon22	c.C4291G	p.Q1431E	GTTGCTGTATGTT	.	326.0	167.0	360.0	1.0	.	.
FAM217A	222826	hgsc.bcm.edu;bcgsc.ca	37	6	4070154	4070154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_173563	exon7	c.G303T	p.R101S	GAATTCCCTTTAA	.	100.0	4.0	68.0	0.0	.	.
FAM71E1	112703	hgsc.bcm.edu;bcgsc.ca	37	19	50971076	50971076	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM71E1	NM_138411	exon4	c.T502C	p.L168L	ACTTCAAGGGGAA	.	77.0	4.0	61.0	0.0	.	44
FARP2	9855	hgsc.bcm.edu;bcgsc.ca	37	2	242432429	242432429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FARP2	NM_014808	exon25	c.T2873C	p.L958S	TCTGTTTGTTCTT	.	98.0	4.0	81.0	0.0	.	93
FAT3	120114	hgsc.bcm.edu;bcgsc.ca	37	11	92087868	92087868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAT3	NM_001008781	exon1	c.G2590T	p.G864C	TCTAATGGTGAAG	.	98.0	4.0	73.0	0.0	.	73
FBF1	85302	hgsc.bcm.edu;bcgsc.ca	37	17	73916127	73916127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBF1	NM_001080542	exon18	c.A1847G	p.Q616R	TGGTGCTGCTGCT	.	115.0	5.0	96.0	0.0	.	205
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45943008	45943008	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBLN1	NM_006487	exon12	c.C1365T	p.A455A	GTGTGCCAACGTC	.	45.0	33.0	80.0	0.0	.	515
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127704892	127704892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBN2	NM_001999	exon16	c.G2231A	p.C744Y	GCAGGGCATGGCT	.	38.0	15.0	42.0	0.0	.	146
FCGBP	8857	hgsc.bcm.edu;bcgsc.ca	37	19	40440523	40440523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FCGBP	NM_003890	exon1	c.G3T	p.M1I	GGCACCCATGGCT	.	57.0	4.0	51.0	0.0	.	98
FETUB	26998	hgsc.bcm.edu;bcgsc.ca	37	3	186358341	186358341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FETUB	NM_014375	exon1	c.T92C	p.L31P	CGGCTCTGCTCTC	.	129.0	6.0	174.0	0.0	.	92
FRAS1	80144	hgsc.bcm.edu;bcgsc.ca	37	4	79455681	79455681	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRAS1	NM_025074	exon71	c.C11004A	p.L3668L	TCAGCTCTGCAAT	.	79.0	4.0	139.0	0.0	.	68
FXYD6-FXYD2	100533181	hgsc.bcm.edu;bcgsc.ca	37	11	117712509	117712509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001243598	exon4	c.C169A	p.L57I	TACTTAGGATAAG	.	87.0	5.0	112.0	0.0	.	.
FYN	2534	hgsc.bcm.edu;bcgsc.ca	37	6	112021440	112021440	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	FYN,NS,carcinoma,-2	FYN	NM_002037	exon9	c.A729G	p.V243V	GGGAACTACTAGG	.	78.0	4.0	112.0	0.0	.	1000
GALNT13	114805	hgsc.bcm.edu;bcgsc.ca	37	2	155295139	155295139	+	Silent	SNP	C	C	A	rs182009673	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GALNT13	NM_052917	exon12	c.C1431A	p.T477T	CCGAACCGATGAC	.	117.0	5.0	141.0	0.0	C|0.999;T|0.001	95
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34074044	34074044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAS2L2	NM_139285	exon5	c.C1076A	p.P359Q	AGGAATGGTGCCA	.	80.0	5.0	86.0	0.0	.	227
GBP6	163351	hgsc.bcm.edu;bcgsc.ca	37	1	89843997	89843997	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GBP6	NM_198460	exon5	c.A450G	p.E150E	CACAGAACTAATT	.	64.0	4.0	95.0	0.0	.	92
GFM1	85476	hgsc.bcm.edu;bcgsc.ca	37	3	158364696	158364696	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFM1	NM_024996	exon4	c.C532A	p.R178R	TTGGACCGAATGG	.	92.0	4.0	93.0	0.0	.	93
GFRA1	2674	hgsc.bcm.edu;bcgsc.ca	37	10	117853332	117853332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFRA1	NM_005264	exon8	c.C896A	p.P299H	TAGTTGGGGGTCA	.	123.0	5.0	101.0	0.0	.	93
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110390999	110390999	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GIT2	NM_001135213	exon14	c.C1146T	p.H382H	AACGCTGTGCTGG	.	467.0	195.0	448.0	0.0	.	226
GLE1	2733	hgsc.bcm.edu;bcgsc.ca	37	9	131277857	131277857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLE1	NM_001499	exon3	c.G371T	p.R124L	CCTCACGGGGGAT	.	51.0	4.0	93.0	0.0	.	22
GPIHBP1	338328	hgsc.bcm.edu;bcgsc.ca	37	8	144296897	144296897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPIHBP1	NM_178172	exon3	c.G191T	p.R64L	TGCTGCGGTGCTA	.	122.0	6.0	94.0	0.0	.	68
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105781253	105781253	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIA4	NM_001077244	exon10	c.G1251T	p.V417V	AACAGTGGTTGTA	.	158.0	49.0	209.0	0.0	.	230
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9857312	9857312	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon14	c.C4089A	p.S1363S	GTTATCGGAGGTG	.	63.0	4.0	120.0	0.0	.	349
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9862782	9862782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon13	c.T2521C	p.F841L	AGTAGAAGAGGTG	.	54.0	4.0	77.0	0.0	.	349
GRIN2A	2903	hgsc.bcm.edu;bcgsc.ca	37	16	9943750	9943750	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon6	c.C1191A	p.S397S	ACAGTCGGAGAAG	.	62.0	4.0	120.0	0.0	.	349
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86415661	86415661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRM3	NM_000840	exon3	c.G553C	p.D185H	CGCTATGATTACT	.	224.0	89.0	294.0	0.0	.	528
GTF3C2	2976	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	27550059	27550059	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTF3C2	NM_001521	exon19	c.C2502T	p.N834N	AGCCTCCAGCTGC	.	44.0	4.0	64.0	0.0	.	92
GYG2	8908	hgsc.bcm.edu;bcgsc.ca	37	X	2774545	2774545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GYG2	NM_003918	exon7	c.A587G	p.D196G	GGGCAGACCAAGG	.	80.0	4.0	108.0	0.0	.	132
HCRTR1	3061	hgsc.bcm.edu;bcgsc.ca	37	1	32087137	32087137	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HCRTR1	NM_001525	exon6	c.C682T	p.L228L	GCCCCACTGGGCC	.	75.0	4.0	115.0	0.0	.	523
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	15	63916007	63916007	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC1	NM_003922	exon73	c.C13528A	p.R4510R	ACGCTCGGGAAGG	.	50.0	4.0	75.0	0.0	.	666
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	36091619	36091619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HNF1B	NM_000458	exon4	c.C1012T	p.Q338X	TGGGCTGGTGGTG	.	431.0	174.0	421.0	0.0	.	71
HOXA11	3207	hgsc.bcm.edu;bcgsc.ca	37	7	27222608	27222608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOXA11	NM_005523	exon2	c.A749G	p.K250R	TGGTACTTGGTAT	.	72.0	4.0	102.0	0.0	.	1082
HPGD	3248	hgsc.bcm.edu;bcgsc.ca	37	4	175443106	175443106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HPGD	NM_000860	exon2	c.A206G	p.Q69R	AGTTGTTGCTGGT	.	57.0	4.0	85.0	0.0	.	90
HSD17B1	3292	hgsc.bcm.edu;bcgsc.ca	37	17	40706435	40706435	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSD17B1	NM_000413	exon5	c.C552T	p.I184I	CCTGATCGAGTGC	.	60.0	4.0	39.0	0.0	.	90
HSPG2	3339	hgsc.bcm.edu;bcgsc.ca	37	1	22180694	22180694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSPG2	NM_005529	exon50	c.A6431G	p.Y2144C	GGGGTGTAGCTGG	.	58.0	4.0	109.0	0.0	.	141
IFI27L1	122509	hgsc.bcm.edu;bcgsc.ca	37	14	94568841	94568841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFI27L1	NM_145249	exon5	c.T242C	p.V81A	TCTCTGTGACATC	.	83.0	4.0	136.0	0.0	.	90
IFNG	3458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	68551870	68551870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFNG	NM_000619	exon3	c.T189A	p.S63R	TCTGTCACTCTCC	.	112.0	37.0	93.0	0.0	.	90
IRF2BPL	64207	hgsc.bcm.edu;bcgsc.ca	37	14	77491917	77491917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF2BPL	NM_024496	exon1	c.T2219C	p.F740S	CAAGGGAAGCAAA	.	79.0	4.0	115.0	0.0	.	90
IRF8	3394	hgsc.bcm.edu;bcgsc.ca	37	16	85946744	85946744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF8	NM_002163	exon5	c.T455C	p.V152A	CTTCTGTGGACGA	.	68.0	4.0	132.0	0.0	.	154
ITFG3	83986	hgsc.bcm.edu;bcgsc.ca	37	16	312091	312091	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITFG3	NM_032039	exon7	c.709-1G>T	.	ATTGCAGGTTAGT	.	113.0	5.0	243.0	0.0	.	90
ITGA11	22801	hgsc.bcm.edu;bcgsc.ca	37	15	68631922	68631922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA11	NM_001004439	exon11	c.A1192G	p.T398A	CACTCGTCTCCTT	.	58.0	5.0	85.0	0.0	.	538
ITGB2	3689	hgsc.bcm.edu;bcgsc.ca	37	21	46330223	46330223	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB2	NM_000211	exon3	c.C123A	p.P41P	GCAGCCGGGCCCC	.	143.0	6.0	104.0	0.0	.	717
JAKMIP1	152789	hgsc.bcm.edu;bcgsc.ca	37	4	6087187	6087187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JAKMIP1	NM_001099433	exon4	c.C794A	p.P265Q	CCGGGCGGGAGCT	.	63.0	4.0	95.0	0.0	.	292
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	15497298	15497298	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JARID2	NM_004973	exon7	c.C1842T	p.I614I	GCACATCCACAAG	.	156.0	65.0	155.0	0.0	.	228
KCNH8	131096	hgsc.bcm.edu;bcgsc.ca	37	3	19575099	19575099	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCNH8	NM_144633	exon16	c.T2832C	p.Y944Y	TGCTTATACCCAA	.	120.0	5.0	125.0	0.0	.	524
KIAA0020	9933	hgsc.bcm.edu;bcgsc.ca	37	9	2807906	2807906	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0020	NM_014878	exon18	c.1724-2A>G	.	ACAACCTGTAAAA	.	73.0	4.0	42.0	0.0	.	91
KIAA0319L	79932	hgsc.bcm.edu;bcgsc.ca	37	1	35928256	35928256	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0319L	NM_024874	exon8	c.T1260C	p.S420S	TGGCAAAGAGATC	.	56.0	4.0	96.0	0.0	.	92
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154524546	154524546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0922	NM_001131007	exon24	c.A2731G	p.S911G	AATGCTAGCTCCT	.	170.0	147.0	247.0	0.0	.	92
KIAA0947	23379	hgsc.bcm.edu;bcgsc.ca	37	5	5489287	5489287	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0947	NM_015325	exon19	c.A6645G	p.A2215A	GTTAGCAGCCGTG	.	83.0	4.0	76.0	0.0	.	48
KIAA1549L	25758	hgsc.bcm.edu;bcgsc.ca	37	11	33573676	33573676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012194	exon5	c.G2853T	p.A951A	CCAAGCGGACAAC	.	75.0	4.0	103.0	0.0	.	.
KIF16B	55614	hgsc.bcm.edu;bcgsc.ca	37	20	16492142	16492142	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF16B	NM_001199865	exon6	c.A477G	p.R159R	TAGATCTCTCACA	.	94.0	4.0	106.0	0.0	.	291
KIF17	57576	hgsc.bcm.edu;bcgsc.ca	37	1	21014288	21014288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF17	NM_020816	exon8	c.G1531T	p.D511Y	AGACATCGTCACT	.	73.0	4.0	124.0	0.0	.	94
KL	9365	hgsc.bcm.edu;bcgsc.ca	37	13	33635814	33635814	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KL	NM_004795	exon4	c.C2598T	p.L866L	AGACCTCCCCATG	.	83.0	4.0	88.0	0.0	.	155
KLF17	128209	hgsc.bcm.edu;bcgsc.ca	37	1	44595054	44595054	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLF17	NM_173484	exon2	c.C111T	p.N37N	CTTGAACATGTCT	.	84.0	4.0	144.0	0.0	.	92
KLHL8	57563	hgsc.bcm.edu;bcgsc.ca	37	4	88098001	88098001	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHL8	NM_020803	exon6	c.T1116C	p.G372G	ATGTCCACCTACT	.	97.0	4.0	156.0	0.0	.	90
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	123055607	123055607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KNTC1	NM_014708	exon24	c.G1953C	p.E651D	GGCAGAGATATTT	.	232.0	15.0	254.0	0.0	.	543
KPNA7	402569	hgsc.bcm.edu;bcgsc.ca	37	7	98792707	98792707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KPNA7	NM_001145715	exon4	c.T539C	p.L180P	TTACCAAGAGCCC	.	73.0	4.0	129.0	0.0	.	158
KRT1	3848	hgsc.bcm.edu;bcgsc.ca	37	12	53069530	53069530	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT1	NM_006121	exon9	c.1476-2A>G	.	ACATCCTGTAGGA	.	139.0	6.0	153.0	0.0	.	92
KRT77	374454	hgsc.bcm.edu;bcgsc.ca	37	12	53086273	53086273	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT77	NM_175078	exon7	c.G1359A	p.L453L	GACCCCCAGCATG	.	100.0	5.0	102.0	0.0	.	187
LAMA3	3909	hgsc.bcm.edu;bcgsc.ca	37	18	21355846	21355846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAMA3	NM_001127717	exon10	c.A1364G	p.E455G	ACTGTGAGAAGTG	.	101.0	5.0	122.0	0.0	.	100
LANCL1	10314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	211341073	211341073	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LANCL1	NM_001136574	exon2	c.C48G	p.S16S	GGCCAGGGATTTG	.	322.0	163.0	374.0	0.0	.	90
LDOC1L	84247	hgsc.bcm.edu;bcgsc.ca	37	22	44893427	44893427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LDOC1L	NM_032287	exon2	c.C10T	p.P4S	TCTGCGGCTGCAC	.	66.0	4.0	119.0	0.0	.	69
LEPR	3953	hgsc.bcm.edu;bcgsc.ca	37	1	66067256	66067256	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LEPR	NM_001003680	exon9	c.T1176C	p.T392T	AGTTACTTTTTTC	.	90.0	4.0	166.0	0.0	.	91
LIN7C	55327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	27523454	27523454	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIN7C	NM_018362	exon2	c.A51G	p.A17A	TTCAATTGCTCTA	.	87.0	28.0	94.0	0.0	.	90
LMO2	4005	hgsc.bcm.edu;bcgsc.ca	37	11	33890910	33890910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LMO2	NM_005574	exon4	c.A230G	p.K77R	AGGCTCTTCCTTT	.	45.0	4.0	41.0	0.0	.	658
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14273762	14273762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LPHN1	NM_001008701	exon6	c.G866T	p.R289L	ACCAGCCGCCCGT	.	89.0	4.0	62.0	0.0	.	523
LRGUK	136332	hgsc.bcm.edu;bcgsc.ca	37	7	133876488	133876488	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRGUK	NM_144648	exon12	c.T1416C	p.D472D	TTTTGATGAAATG	.	87.0	4.0	154.0	0.0	.	227
LRRC17	10234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102584705	102584705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC17	NM_001031692	exon4	c.A977G	p.N326S	CAAACAACAGTCT	.	78.0	33.0	109.0	0.0	.	91
LRRC56	115399	hgsc.bcm.edu;bcgsc.ca	37	11	540775	540775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC56	NM_198075	exon4	c.C91T	p.P31S	CACAACCCCTGCC	.	69.0	4.0	67.0	0.0	.	91
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57910119	57910119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARS	NM_004990	exon20	c.A2555C	p.Q852P	CAAAACAAGTATG	.	156.0	69.0	163.0	0.0	.	654
MDFIC	29969	hgsc.bcm.edu;bcgsc.ca	37	7	114619590	114619590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDFIC	NM_199072	exon4	c.A574G	p.T192A	CTTCAGACTTCAG	.	87.0	4.0	140.0	0.0	.	91
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90368429	90368429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDN1	NM_014611	exon89	c.A14921C	p.E4974A	GAGTGTTCTTCAG	.	314.0	149.0	319.0	1.0	.	100
MED12L	116931	hgsc.bcm.edu;bcgsc.ca	37	3	151107911	151107911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MED12L	NM_053002	exon36	c.T5491C	p.S1831P	AACCAATCTCTTA	.	55.0	4.0	52.0	0.0	.	576
MGRN1	23295	hgsc.bcm.edu;bcgsc.ca	37	16	4715144	4715144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MGRN1	NM_001142291	exon7	c.T670C	p.F224L	GCTGCCTTTGAAA	.	61.0	4.0	154.0	0.0	.	92
MMAA	166785	hgsc.bcm.edu;bcgsc.ca	37	4	146575291	146575291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMAA	NM_172250	exon6	c.C965A	p.P322Q	GGAAACCAAAGGT	.	76.0	4.0	94.0	0.0	.	91
MMGT1	93380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135053250	135053250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMGT1	NM_173470	exon2	c.A99T	p.L33F	TTCTGTTAATCGC	.	484.0	245.0	578.0	0.0	.	130
MPO	4353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	56355209	56355209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPO	NM_000250	exon7	c.C1183T	p.R395C	GGATGCGCGCTGA	.	37.0	15.0	38.0	0.0	.	156
MSANTD3	91283	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103212870	103212870	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001198805	exon3	c.C450T	p.C150C	ACTGTGCGATGAT	.	195.0	86.0	173.0	0.0	.	.
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu;bcgsc.ca	37	9	103312401	103312401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001198812	exon7	c.G956A	p.G319E	TGTTGGGAAAGAA	.	63.0	4.0	65.0	0.0	.	.
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195517320	195517320	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC4	NM_018406	exon2	c.C1131G	p.T377T	GGATGAGGTGGTT	.	377.0	117.0	394.0	0.0	.	90
MYLK2	85366	hgsc.bcm.edu;bcgsc.ca	37	20	30419870	30419870	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYLK2	NM_033118	exon12	c.C1641A	p.A547A	GAAAGCCAAACGC	.	98.0	6.0	77.0	0.0	.	760
MYO9A	4649	hgsc.bcm.edu;bcgsc.ca	37	15	72196317	72196317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO9A	NM_006901	exon21	c.A2830G	p.T944A	GAACTGTTTCCAG	.	91.0	4.0	125.0	0.0	.	93
MYOM1	8736	hgsc.bcm.edu;bcgsc.ca	37	18	3187546	3187546	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon5	c.G861T	p.T287T	CCAAACCGTGTGG	.	89.0	4.0	115.0	0.0	.	94
MYOZ2	51778	hgsc.bcm.edu;bcgsc.ca	37	4	120079175	120079175	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOZ2	NM_016599	exon4	c.247-2A>G	.	AAATACAGCACAG	.	75.0	4.0	146.0	0.0	.	90
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41892974	41892974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAA16	NM_001110798	exon3	c.T172C	p.C58R	CTGAACTGTTTAG	.	82.0	4.0	84.0	0.0	.	90
NAB1	4664	hgsc.bcm.edu;bcgsc.ca	37	2	191548468	191548468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAB1	NM_005966	exon7	c.G1010T	p.G337V	AGGATGGGTTTCC	.	80.0	5.0	91.0	0.0	.	226
NBEA	26960	hgsc.bcm.edu;bcgsc.ca	37	13	35517180	35517180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NBEA	NM_015678	exon1	c.G223T	p.A75S	AAATTCGCAGTGT	.	116.0	5.0	165.0	0.0	.	144
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	19359573	19359573	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCAN	NM_004386	exon14	c.C3702A	p.Y1234X	CAAGTACAATGTC	.	126.0	60.0	129.0	0.0	.	94
NKD1	85407	hgsc.bcm.edu;bcgsc.ca	37	16	50667325	50667325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKD1	NM_033119	exon10	c.C1046T	p.P349L	GGTCCCCCAAGGC	.	149.0	7.0	275.0	0.0	.	226
NKX6-3	157848	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	41503971	41503971	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKX6-3	NM_152568	exon2	c.C405T	p.V135V	GCGTCAGACGCTG	.	97.0	43.0	97.0	1.0	.	90
NPPC	4880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	232790144	232790144	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPPC	NM_024409	exon2	c.G372A	p.L124L	ACATCCCAGGCCG	.	110.0	22.0	90.0	0.0	.	90
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	17	78445639	78445639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPTX1	NM_002522	exon4	c.G970T	p.G324W	AGACCCCGTCCCG	.	84.0	4.0	74.0	0.0	.	90
NRG2	9542	broad.mit.edu;bcgsc.ca	37	5	139232521	139232521	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NRG2	NM_013982	exon8	c.C1408A	p.R470R	CCAGCCGGGGGTG	.	163.0	8.0	164.0	1.0	.	526
NUDT15	55270	hgsc.bcm.edu;bcgsc.ca	37	13	48611895	48611895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUDT15	NM_018283	exon1	c.G13A	p.A5T	GCCAGCGCACAGC	.	61.0	4.0	74.0	0.0	.	90
NUP98	4928	hgsc.bcm.edu;bcgsc.ca	37	11	3716712	3716712	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUP98	NM_016320	exon26	c.A4134G	p.R1378R	GCGCAGTCTCTCA	.	71.0	4.0	57.0	0.0	.	703
OAS2	4939	hgsc.bcm.edu;bcgsc.ca	37	12	113444238	113444238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OAS2	NM_002535	exon8	c.A1489G	p.T497A	GGCTCCACACCCA	.	98.0	4.0	131.0	0.0	.	91
OR2B3	442184	hgsc.bcm.edu;bcgsc.ca	37	6	29054566	29054566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2B3	NM_001005226	exon1	c.G460T	p.G154C	AGTTGCCGAAACC	.	102.0	5.0	72.0	0.0	.	1
OR2T3	343173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248637025	248637025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2T3	NM_001005495	exon1	c.A374G	p.Y125C	TGGCCTATGACCG	.	787.0	209.0	545.0	0.0	.	69
OR8A1	390275	hgsc.bcm.edu;bcgsc.ca	37	11	124440852	124440852	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR8A1	NM_001005194	exon1	c.G888T	p.T296T	CACCACGGTAATC	.	154.0	8.0	180.0	0.0	.	69
OSBPL6	114880	hgsc.bcm.edu;bcgsc.ca	37	2	179197627	179197627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OSBPL6	NM_001201482	exon8	c.G516T	p.W172C	TGCATGGGTCTCC	.	122.0	5.0	126.0	0.0	.	69
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	102237061	102237061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAM	NM_138822	exon3	c.C212A	p.S71Y	AATAGTCCGATAC	.	382.0	137.0	380.0	1.0	.	68
PC	5091	hgsc.bcm.edu;bcgsc.ca	37	11	66639169	66639169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PC	NM_000920	exon4	c.A310G	p.K104E	CCACCTTGATGAT	.	88.0	4.0	86.0	0.0	.	228
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	140579924	140579924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB11	NM_018931	exon1	c.G577T	p.E193X	TACCCCGAGTTAG	.	262.0	123.0	196.0	0.0	.	96
PCDHB15	56121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140626597	140626597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB15	NM_018935	exon1	c.C1451G	p.A484G	CCAACGCCCAGGT	.	277.0	125.0	240.0	0.0	.	156
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140735864	140735864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_018917	exon1	c.T1097C	p.I366T	CAGTAATTGCACT	.	114.0	45.0	91.0	0.0	.	.
PDCD6IP	10015	broad.mit.edu;bcgsc.ca	37	3	33870347	33870347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDCD6IP	NM_001162429	exon7	c.G735T	p.E245D	CCAGGAGGTGTTC	.	1058.0	49.0	1129.0	2.0	.	228
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39910134	39910134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001100399	exon11	c.C1114A	p.P372T	CTTCTGGATCATG	.	68.0	4.0	92.0	0.0	.	.
PHF21A	51317	hgsc.bcm.edu;bcgsc.ca	37	11	46098351	46098351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21A	NM_016621	exon5	c.A107G	p.Q36R	TGAAGCTGTTTCT	.	89.0	4.0	105.0	0.0	.	92
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45291935	45291935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21B	NM_138415	exon6	c.T860C	p.L287P	GTAACCAGGCCTA	.	98.0	67.0	139.0	0.0	.	93
PHKB	5257	hgsc.bcm.edu;bcgsc.ca	37	16	47545621	47545621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHKB	NM_000293	exon5	c.T451C	p.S151P	CTTCACTCTGTTT	.	86.0	4.0	138.0	0.0	.	154
PIK3CD	5293	hgsc.bcm.edu;bcgsc.ca	37	1	9782115	9782115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon17	c.A2138G	p.E713G	CCAAGGAGCTGAT	.	82.0	4.0	147.0	0.0	.	1311
PIK3CD	5293	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	9781914	9781914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon16	c.A2051G	p.K684R	TGATGAAGCAGGT	.	28.0	4.0	33.0	0.0	.	1311
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81185495	81185495	+	RNA	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PKD1L2	.	.	.	.	AGGTCATAGACCA	.	90.0	72.0	194.0	0.0	.	92
PLAGL1	5325	hgsc.bcm.edu;bcgsc.ca	37	6	144263706	144263706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLAGL1	NM_001080953	exon7	c.A247G	p.T83A	CGTGGGTCTGGAG	.	55.0	4.0	42.0	0.0	.	91
PLCXD2	257068	hgsc.bcm.edu;bcgsc.ca	37	3	111427204	111427204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLCXD2	NM_001185106	exon2	c.C595A	p.L199M	TTGACGCTGCGAA	.	118.0	5.0	141.0	0.0	.	227
POLG	5428	hgsc.bcm.edu;bcgsc.ca	37	15	89876764	89876764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLG	NM_002693	exon2	c.G222T	p.L74F	GATGTCCAATGGG	.	70.0	4.0	85.0	0.0	.	228
POLR3B	55703	hgsc.bcm.edu;bcgsc.ca	37	12	106824192	106824192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLR3B	NM_018082	exon14	c.C1405T	p.R469C	GGTCCTCGCTCCC	.	91.0	4.0	115.0	0.0	.	91
PROX1	5629	hgsc.bcm.edu;bcgsc.ca	37	1	214170676	214170676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PROX1	NM_001270616	exon2	c.G798T	p.S266S	TGATTCGGAAAAT	.	88.0	4.0	69.0	0.0	.	654
PRR23A	729627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	138725110	138725110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001134659	exon1	c.A1G	p.M1V	TGCCCATAGCCTC	.	12.0	8.0	19.0	0.0	.	.
PRSS12	8492	hgsc.bcm.edu;bcgsc.ca	37	4	119203115	119203115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRSS12	NM_003619	exon13	c.G2604T	p.W868C	TTTTATCCAAGGT	.	64.0	4.0	81.0	0.0	.	91
PTGR2	145482	hgsc.bcm.edu;bcgsc.ca	37	14	74350824	74350824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTGR2	NM_152444	exon10	c.A1000G	p.T334A	ATGATGACAGGAG	.	91.0	4.0	106.0	0.0	.	90
PTPN9	5780	hgsc.bcm.edu;bcgsc.ca	37	15	75761250	75761250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTPN9	NM_002833	exon13	c.T1642C	p.S548P	TGCGTGACACCGT	.	67.0	4.0	100.0	0.0	.	226
RASGRF1	5923	hgsc.bcm.edu;bcgsc.ca	37	15	79254552	79254552	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASGRF1	NM_002891	exon28	c.T3756C	p.S1252S	TACAAAAGATTGG	.	54.0	4.0	92.0	0.0	.	662
RASSF9	9182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	86198974	86198974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASSF9	NM_005447	exon2	c.C814T	p.R272X	TCAGTCGTTCTTC	.	109.0	35.0	141.0	0.0	.	23
RBM47	54502	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40434757	40434757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM47	NM_001098634	exon6	c.G1453C	p.D485H	CTGGGTCTGGCTG	.	168.0	129.0	247.0	1.0	.	25
RCN1	5954	hgsc.bcm.edu;bcgsc.ca	37	11	32125951	32125951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RCN1	NM_002901	exon6	c.A929G	p.N310S	ACTGGAACATGTT	.	115.0	5.0	139.0	0.0	.	153
RDH8	50700	hgsc.bcm.edu;bcgsc.ca	37	19	10131464	10131464	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RDH8	NM_015725	exon4	c.G582A	p.L194L	GCTGCTGCAGTTC	.	80.0	4.0	101.0	0.0	.	94
RGPD4	285190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	108487607	108487607	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RGPD4	NM_182588	exon20	c.A3147G	p.E1049E	AGTAGAACTTGTA	.	124.0	47.0	137.0	0.0	.	2
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33498926	33498926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHPN2	NM_033103	exon7	c.G754T	p.A252S	CTGCGGCTCTCTG	.	159.0	60.0	118.0	0.0	.	516
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38950476	38950476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RICTOR	NM_152756	exon31	c.A3474T	p.Q1158H	CTCTAATTGTAAT	.	427.0	190.0	309.0	1.0	.	849
RNASE4	6038	hgsc.bcm.edu;bcgsc.ca	37	14	21167714	21167714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNASE4	NM_002937	exon2	c.A184G	p.M62V	CGGAAGATGACTT	.	55.0	4.0	89.0	0.0	.	514
RNF123	63891	hgsc.bcm.edu;bcgsc.ca	37	3	49735904	49735904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF123	NM_022064	exon8	c.C515T	p.A172V	CCTATGCCTATGA	.	90.0	5.0	115.0	0.0	.	584
RNF128	79589	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	105970375	105970375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF128	NM_194463	exon1	c.G232T	p.E78X	CCGCTGGAGCCTG	.	208.0	75.0	192.0	0.0	.	227
ROR2	4920	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	94495611	94495611	+	Missense_Mutation	SNP	G	G	A	rs148340413	byfrequency	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ROR2	NM_004560	exon6	c.C730T	p.R244W	GTGTCCGGGAGCG	.	227.0	107.0	159.0	1.0	G|1.000;A|0.000	1471
RPGR	6103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38145015	38145015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPGR	NM_001034853	exon15	c.G3237T	p.R1079S	ATCCTGCCTTTCA	.	745.0	365.0	834.0	1.0	.	131
RPS6KA3	6197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20181109	20181109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPS6KA3	NM_004586	exon19	c.G1814A	p.G605D	AGGACACCAAGAC	.	366.0	24.0	411.0	1.0	.	1504
RSL1D1	26156	hgsc.bcm.edu;bcgsc.ca	37	16	11935611	11935611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RSL1D1	NM_015659	exon7	c.T796C	p.S266P	CAAACGAGGAAAA	.	122.0	5.0	135.0	0.0	.	90
SBNO1	55206	hgsc.bcm.edu;bcgsc.ca	37	12	123798234	123798234	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SBNO1	NM_001167856	exon23	c.A3153G	p.K1051K	AATGGATTTCATG	.	68.0	4.0	66.0	0.0	.	292
SCEL	8796	hgsc.bcm.edu;bcgsc.ca	37	13	78130761	78130761	+	Missense_Mutation	SNP	G	G	T	rs200836262	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCEL	NM_003843	exon3	c.G74T	p.R25L	CCACACGGAAGCA	.	92.0	4.0	84.0	0.0	.	95
SCP2D1	140856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18794517	18794517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_178483	exon1	c.G58T	p.G20C	CTGGTGGGCCAGT	.	196.0	90.0	166.0	1.0	.	.
SEC24B	10427	hgsc.bcm.edu;bcgsc.ca	37	4	110453794	110453794	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24B	NM_006323	exon21	c.3391-1G>T	.	TTTTCAGGGTGCA	.	49.0	4.0	85.0	0.0	.	137
SEC24D	9871	hgsc.bcm.edu;bcgsc.ca	37	4	119666159	119666159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24D	NM_014822	exon14	c.A1764G	p.E588E	TGGTGCTTCAGCA	.	170.0	7.0	252.0	0.0	.	90
SEL1L3	23231	hgsc.bcm.edu;bcgsc.ca	37	4	25849271	25849271	+	Silent	SNP	G	G	T	rs200467510	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_015187	exon2	c.C378A	p.P126P	GTACACGGGAATG	.	97.0	4.0	172.0	0.0	G|0.996;A|0.004	.
SEMA6A	57556	hgsc.bcm.edu;bcgsc.ca	37	5	115823894	115823894	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA6A	NM_020796	exon10	c.656-2A>G	.	TGGTTCTGTAGAC	.	139.0	6.0	126.0	0.0	.	92
SEPT3	55964	hgsc.bcm.edu;bcgsc.ca	37	22	42377812	42377812	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEPT3	NM_019106	exon2	c.C174A	p.T58T	GAAGACCGGTTTC	.	72.0	6.0	83.0	0.0	.	68
SERPINE2	5270	hgsc.bcm.edu;bcgsc.ca	37	2	224856708	224856708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SERPINE2	NM_001136530	exon4	c.A533G	p.D178G	AGATTGTCAATCA	.	59.0	4.0	55.0	0.0	.	290
SETD3	84193	hgsc.bcm.edu;bcgsc.ca	37	14	99927679	99927679	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SETD3	NM_032233	exon5	c.197-2A>G	.	CAGACCTATATTA	.	49.0	4.0	73.0	0.0	.	514
SEZ6L	23544	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	26690288	26690288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEZ6L	NM_021115	exon3	c.A866C	p.E289A	ATCCTGAGGGGTA	.	105.0	8.0	168.0	1.0	.	95
SFI1	9814	hgsc.bcm.edu;bcgsc.ca	37	22	31969140	31969140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SFI1	NM_001007467	exon9	c.A862G	p.R288G	AAACGGAGATTTC	.	53.0	4.0	50.0	0.0	.	90
SHANK2	22941	hgsc.bcm.edu;bcgsc.ca	37	11	70336441	70336441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHANK2	NM_133266	exon8	c.A727G	p.S243G	TTGGGCTCCCAGG	.	102.0	5.0	99.0	0.0	.	94
SHROOM1	134549	bcgsc.ca;mdanderson.org	37	5	132161730	132161730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM1	NM_133456	exon1	c.T103C	p.S35P	AGAAAGAGCTGTA	.	54.0	5.0	37.0	1.0	.	91
SHROOM3	57619	hgsc.bcm.edu;bcgsc.ca	37	4	77660862	77660862	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM3	NM_020859	exon5	c.T1536C	p.A512A	GATGGCTACCATT	.	54.0	4.0	93.0	0.0	.	93
SIGIRR	59307	hgsc.bcm.edu;bcgsc.ca	37	11	407512	407512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIGIRR	NM_021805	exon6	c.T538C	p.F180L	TCACGAACTTGCG	.	167.0	7.0	132.0	0.0	.	90
SIRT6	51548	hgsc.bcm.edu;bcgsc.ca	37	19	4179153	4179153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIRT6	NM_016539	exon3	c.T325C	p.F109L	CCAGGAAGCGGAG	.	93.0	5.0	67.0	0.0	.	227
SLC12A6	9990	hgsc.bcm.edu;bcgsc.ca	37	15	34547524	34547524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC12A6	NM_133647	exon7	c.T815C	p.F272S	AGATAAAAGCAGA	.	69.0	5.0	91.0	0.0	.	517
SLC14A1	6563	hgsc.bcm.edu;bcgsc.ca	37	18	43310402	43310402	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC14A1	NM_001146037	exon2	c.C285A	p.T95T	TGTCACCGGTGAC	.	97.0	5.0	99.0	0.0	.	515
SLC15A2	6565	hgsc.bcm.edu;bcgsc.ca	37	3	121647383	121647383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC15A2	NM_021082	exon15	c.A1322G	p.E441G	TGATAGAGTCCAT	.	100.0	6.0	126.0	0.0	.	91
SLC16A4	9122	hgsc.bcm.edu;bcgsc.ca	37	1	110918150	110918150	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC16A4	NM_004696	exon8	c.A1266G	p.T422T	GTTTACTGTAGAA	.	85.0	5.0	169.0	0.0	.	93
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62373570	62373570	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC2A4RG	NM_020062	exon5	c.C667T	p.L223L	ATCCGCCTGGTGC	.	137.0	62.0	126.0	0.0	.	90
SLC34A2	10568	hgsc.bcm.edu;bcgsc.ca	37	4	25664190	25664190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC34A2	NM_001177998	exon2	c.G68A	p.G23D	CCGCAGGTCAGCA	.	90.0	4.0	124.0	0.0	.	95
SLC37A1	54020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43979198	43979198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A1	NM_018964	exon12	c.C980A	p.P327Q	AAATTCCAGTAAG	.	51.0	5.0	37.0	0.0	.	90
SLC37A3	84255	hgsc.bcm.edu;bcgsc.ca	37	7	140069457	140069457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A3	NM_207113	exon4	c.C224A	p.P75H	GCACTGGGGAACA	.	47.0	4.0	44.0	0.0	.	93
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142228278	142228278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC45A4	NM_001080431	exon4	c.G1308T	p.E436D	CTCCCCCTCCTCA	.	85.0	33.0	71.0	0.0	.	70
SLC5A2	6524	hgsc.bcm.edu;bcgsc.ca	37	16	31499986	31499986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC5A2	NM_003041	exon10	c.G1173T	p.M391I	GCTCATGTCCTCG	.	56.0	4.0	113.0	0.0	.	91
SLITRK1	114798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84453981	84453981	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLITRK1	NM_052910	exon1	c.C1662G	p.S554R	GAGGTCGCTCATC	.	108.0	66.0	107.0	1.0	.	94
SMEK1	55671	hgsc.bcm.edu;bcgsc.ca	37	14	91937188	91937188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMEK1	NM_032560	exon11	c.G1614T	p.L538F	TAATGCCAAGAAA	.	93.0	4.0	142.0	0.0	.	226
SMPD2	6610	hgsc.bcm.edu;bcgsc.ca	37	6	109764241	109764241	+	Missense_Mutation	SNP	A	A	G	rs145532915	byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMPD2	NM_003080	exon8	c.A686G	p.K229R	AGCTGAAGCCATT	.	124.0	6.0	105.0	0.0	A|0.999;T|0.001	90
SNAI1	6615	hgsc.bcm.edu;bcgsc.ca	37	20	48600493	48600493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAI1	NM_005985	exon2	c.T215C	p.I72T	AGCCAATTGCCTG	.	86.0	5.0	72.0	0.0	.	227
SNAP29	9342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21235375	21235375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAP29	NM_004782	exon3	c.C473T	p.A158V	AGGAAGCAAAGTA	.	153.0	107.0	209.0	1.0	.	278
SNX15	29907	hgsc.bcm.edu;bcgsc.ca	37	11	64802421	64802421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNX15	NM_147777	exon4	c.A359G	p.K120R	AGCTCAAGGAGTT	.	105.0	5.0	89.0	0.0	.	227
SOX3	6658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	139587141	139587141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SOX3	NM_005634	exon1	c.C85A	p.P29T	GGAAGGGTAGGCT	.	125.0	31.0	126.0	0.0	.	1083
SPACA1	81833	hgsc.bcm.edu;bcgsc.ca	37	6	88768538	88768538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPACA1	NM_030960	exon4	c.C472A	p.Q158K	CAAGACCAAGTGA	.	89.0	5.0	91.0	0.0	.	90
SPAG17	200162	hgsc.bcm.edu;bcgsc.ca	37	1	118550817	118550817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPAG17	NM_206996	exon31	c.G4437T	p.E1479D	AGGACCCTCGGCT	.	77.0	4.0	78.0	0.0	.	158
SPATA19	219938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133714476	133714476	+	Missense_Mutation	SNP	C	C	G	rs138068697	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA19	NM_174927	exon3	c.G195C	p.Q65H	TACACCCTGGGAA	.	178.0	110.0	225.0	0.0	C|1.000;T|0.000	90
SPATA7	55812	hgsc.bcm.edu;bcgsc.ca	37	14	88892683	88892683	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA7	NM_018418	exon6	c.T480C	p.S160S	CCTAAGTCTACAT	.	76.0	4.0	92.0	0.0	.	91
SPECC1	92521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	20163561	20163561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPECC1	NM_001033553	exon12	c.G2894A	p.R965H	CCAAGCGCAATGC	.	136.0	60.0	118.0	0.0	.	639
SPESP1	246777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	69238897	69238897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPESP1	NM_145658	exon2	c.A1024G	p.R342G	TCAAGGAGAGTCA	.	38.0	4.0	41.0	0.0	.	90
SPG7	6687	hgsc.bcm.edu;bcgsc.ca	37	16	89616941	89616941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPG7	NM_003119	exon13	c.A1703G	p.Q568R	AAGAACAGAAAGT	.	78.0	4.0	100.0	0.0	.	226
SPTB	6710	hgsc.bcm.edu;bcgsc.ca	37	14	65252316	65252316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTB	NM_001024858	exon17	c.A3794G	p.E1265G	GAGGCCTCCTGGG	.	62.0	4.0	56.0	0.0	.	100
SPTBN2	6712	hgsc.bcm.edu;bcgsc.ca	37	11	66468660	66468660	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTBN2	NM_006946	exon16	c.C2910A	p.T970T	GGCCTGGGTCTCC	.	119.0	6.0	112.0	0.0	.	155
SRFBP1	153443	hgsc.bcm.edu;bcgsc.ca	37	5	121309963	121309963	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRFBP1	NM_152546	exon2	c.C109A	p.R37R	GTTGGCCGACTGA	.	115.0	5.0	135.0	0.0	.	90
SRSF2	6427	hgsc.bcm.edu;bcgsc.ca	37	17	74732955	74732955	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRSF2	NM_001195427	exon1	c.G288A	p.P96P	TGAGTCCGGGGGG	.	38.0	4.0	33.0	0.0	.	226
SSTR2	6752	hgsc.bcm.edu;bcgsc.ca	37	17	71166524	71166524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSTR2	NM_001050	exon2	c.A1066G	p.T356A	ACGGAGACCCAGA	.	86.0	5.0	73.0	0.0	.	522
STAT5A	6776	hgsc.bcm.edu;bcgsc.ca	37	17	40460208	40460208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STAT5A	NM_003152	exon17	c.T1919C	p.L640P	GCAACCTGTGGAA	.	149.0	6.0	144.0	0.0	.	846
SUMF1	285362	hgsc.bcm.edu;bcgsc.ca	37	3	4458810	4458810	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SUMF1	NM_001164674	exon6	c.765+2T>C	.	TTACTCACAGGCG	.	77.0	4.0	83.0	0.0	.	91
SVEP1	79987	hgsc.bcm.edu;bcgsc.ca	37	9	113169106	113169106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SVEP1	NM_153366	exon38	c.G8774A	p.G2925D	GGAGCACCGTGCA	.	81.0	4.0	70.0	0.0	.	75
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33579155	33579155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYT10	NM_198992	exon2	c.G427A	p.E143K	GGACTTCTGCTGG	.	621.0	234.0	675.0	2.0	.	92
TACC2	10579	hgsc.bcm.edu;bcgsc.ca	37	10	123848021	123848021	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon5	c.T5488C	p.L1830L	TCCATGTTACCTT	.	143.0	6.0	100.0	0.0	.	296
TARBP2	6895	hgsc.bcm.edu;bcgsc.ca	37	12	53899518	53899518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TARBP2	NM_134323	exon8	c.T827C	p.I276T	AGAAGATCCTGTC	.	61.0	4.0	46.0	0.0	.	226
TBCK	93627	hgsc.bcm.edu;bcgsc.ca	37	4	107154107	107154107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBCK	NM_001163436	exon17	c.G1627A	p.V543M	AATACACAAGATC	.	87.0	4.0	195.0	0.0	.	336
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106740125	106740125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCP11L2	NM_152772	exon10	c.G1377A	p.M459I	ATGCATGCCTCCT	.	108.0	42.0	127.0	0.0	.	93
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	78437179	78437179	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001098816	exon23	c.G3495T	p.A1165A	CTTGGACGCGTCA	.	372.0	138.0	431.0	0.0	.	.
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50740456	50740456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFAP2D	NM_172238	exon8	c.C1238T	p.T413I	AACACACTACTCA	.	120.0	43.0	85.0	0.0	.	159
TFR2	7036	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	100226878	100226878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFR2	NM_003227	exon10	c.A1388G	p.N463S	TTACCGTTGCTCA	.	30.0	4.0	62.0	0.0	.	92
TH	7054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2190970	2190970	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TH	NM_199292	exon3	c.G315A	p.E105E	CTTCTCCTCAAAG	.	155.0	86.0	197.0	0.0	.	90
THBS1	7057	hgsc.bcm.edu;bcgsc.ca	37	15	39886569	39886569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THBS1	NM_003246	exon21	c.G3433T	p.G1145C	TATGCTGGTGGTA	.	98.0	4.0	106.0	0.0	.	653
TK2	7084	hgsc.bcm.edu;bcgsc.ca	37	16	66575828	66575828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TK2	NM_001172645	exon3	c.G185T	p.G62V	GTCTTCCCACTTG	.	53.0	4.0	84.0	0.0	.	115
TOP2A	7153	hgsc.bcm.edu;bcgsc.ca	37	17	38561112	38561112	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TOP2A	NM_001067	exon17	c.T1977C	p.D659D	TCGATCATCTATC	.	68.0	4.0	68.0	0.0	.	655
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1440156	1440156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TPO	NM_175719	exon5	c.G482T	p.R161I	ACAACAGGTATTG	.	105.0	58.0	119.0	0.0	.	332
TROAP	10024	hgsc.bcm.edu;bcgsc.ca	37	12	49725141	49725141	+	Missense_Mutation	SNP	G	G	T	rs200487146	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TROAP	NM_005480	exon14	c.G2243T	p.R748L	CCACCCGGGTCTG	.	123.0	5.0	97.0	0.0	G|0.999;A|0.001	91
TRPM3	80036	hgsc.bcm.edu;bcgsc.ca	37	9	73235023	73235023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRPM3	NM_001007471	exon15	c.G2062T	p.D688Y	AAATGTCGTCAAC	.	82.0	4.0	73.0	0.0	.	521
TRRAP	8295	hgsc.bcm.edu;bcgsc.ca	37	7	98545947	98545947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRRAP	NM_001244580	exon33	c.G4631T	p.R1544L	CGGAGCGGGCGAT	.	99.0	4.0	112.0	0.0	.	923
TSPEAR	54084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45953608	45953608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSPEAR	NM_144991	exon3	c.G502A	p.V168I	AGAAGACGCCTGC	.	188.0	74.0	124.0	0.0	.	244
TTC39A	22996	hgsc.bcm.edu;bcgsc.ca	37	1	51767296	51767296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39A	NM_001144832	exon12	c.A1013G	p.K338R	GACATCTTCCACT	.	44.0	4.0	100.0	0.0	.	23
TTC39C	125488	hgsc.bcm.edu;bcgsc.ca	37	18	21660556	21660556	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39C	NM_001135993	exon5	c.C468T	p.I156I	TTATATCAAAGGT	.	83.0	4.0	75.0	0.0	.	91
TWSG1	57045	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	9337333	9337333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TWSG1	NM_020648	exon2	c.A106G	p.S36G	GATGTGAGCAAAT	.	44.0	4.0	35.0	0.0	.	92
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10476357	10476357	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TYK2	NM_003331	exon7	c.C847T	p.L283L	GGGCCAGCAGCCT	.	93.0	45.0	93.0	0.0	.	1009
UBA6	55236	hgsc.bcm.edu;bcgsc.ca	37	4	68534270	68534270	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBA6	NM_018227	exon9	c.G792T	p.T264T	CTTACCCGTTATT	.	114.0	5.0	153.0	0.0	.	90
UBP1	7342	hgsc.bcm.edu;bcgsc.ca	37	3	33444345	33444345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBP1	NM_014517	exon9	c.C979A	p.P327T	GCGCTGGGGAAGG	.	173.0	7.0	184.0	0.0	.	537
ULK4	54986	hgsc.bcm.edu;bcgsc.ca	37	3	41860960	41860960	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ULK4	NM_017886	exon19	c.T1803C	p.V601V	CAAGGGAACAGCC	.	60.0	4.0	67.0	0.0	.	297
UPF1	5976	hgsc.bcm.edu;bcgsc.ca	37	19	18963017	18963017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UPF1	NM_002911	exon6	c.G884T	p.R295L	TCCTGCGGTACGA	.	117.0	5.0	121.0	0.0	.	91
USP36	57602	hgsc.bcm.edu;bcgsc.ca	37	17	76810529	76810529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP36	NM_025090	exon11	c.A1129G	p.S377G	GGCAGCTGTAGCC	.	96.0	4.0	83.0	0.0	.	659
USP48	84196	hgsc.bcm.edu;bcgsc.ca	37	1	22084236	22084236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP48	NM_001032730	exon2	c.G175T	p.G59C	GCTCACCAATACC	.	78.0	5.0	104.0	0.0	.	659
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82849183	82849183	+	Missense_Mutation	SNP	A	A	G	rs13184139	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VCAN	NM_004385	exon11	c.A9494G	p.D3165G	TCTCAGATACCGA	.	59.0	4.0	52.0	0.0	A|1.000;|0.000	238
VPRBP	9730	hgsc.bcm.edu;bcgsc.ca	37	3	51456168	51456168	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPRBP	NM_014703	exon15	c.T3240C	p.C1080C	GTTGTGACAGTTA	.	90.0	4.0	94.0	0.0	.	92
VPS13B	157680	hgsc.bcm.edu;bcgsc.ca	37	8	100654256	100654256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13B	NM_017890	exon34	c.A5513G	p.D1838G	CCTTTGACATATT	.	64.0	4.0	51.0	0.0	.	301
WEE2	494551	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	141414139	141414139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WEE2	NM_001105558	exon2	c.T473C	p.F158S	ATCCCTTCACTCC	.	43.0	4.0	83.0	0.0	.	305
WLS	79971	hgsc.bcm.edu;bcgsc.ca	37	1	68610266	68610266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WLS	NM_024911	exon10	c.T1348C	p.F450L	CGATGAAGAAGAT	.	62.0	4.0	111.0	0.0	.	90
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7691045	7691045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XAB2	NM_020196	exon5	c.A634G	p.K212E	CGGCCTTAGACAC	.	101.0	41.0	90.0	0.0	.	272
XPO5	57510	hgsc.bcm.edu;bcgsc.ca	37	6	43515423	43515423	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XPO5	NM_020750	exon19	c.T2082C	p.A694A	AATGAAAGCATCA	.	103.0	5.0	85.0	0.0	.	271
YPEL4	219539	hgsc.bcm.edu;bcgsc.ca	37	11	57413467	57413467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YPEL4	NM_145008	exon5	c.A371G	p.N124S	CAGCCGTTGTCCT	.	75.0	4.0	64.0	0.0	.	90
ZC3H12C	85463	hgsc.bcm.edu;bcgsc.ca	37	11	110035709	110035709	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3H12C	NM_033390	exon6	c.C1899T	p.S633S	CATGAGCTGTGGG	.	55.0	4.0	74.0	0.0	.	68
ZC3HAV1L	92092	hgsc.bcm.edu;bcgsc.ca	37	7	138719329	138719329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3HAV1L	NM_080660	exon2	c.G461T	p.R154L	AGGATCCGAAGCT	.	80.0	4.0	93.0	0.0	.	90
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72992020	72992020	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFHX3	NM_006885	exon2	c.G2025A	p.K675K	GTTGCACTTGGGG	.	39.0	4.0	41.0	0.0	.	72
ZMYM3	9203	hgsc.bcm.edu;bcgsc.ca	37	X	70465850	70465850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM3	NM_005096	exon16	c.T2671C	p.S891P	GCATCGAGAAAGG	.	89.0	4.0	96.0	0.0	.	131
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133727625	133727625	+	Silent	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF10	NM_015394	exon3	c.C45G	p.T15T	GGTGACCTTCAAG	.	208.0	84.0	206.0	0.0	.	154
ZNF20	7568	hgsc.bcm.edu;bcgsc.ca	37	19	12243683	12243683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF20	NM_021143	exon4	c.A1318G	p.I440V	CATGTATATGCAA	.	89.0	4.0	75.0	0.0	.	22
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	44570978	44570978	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF223	NM_013361	exon5	c.A997T	p.K333X	TTGTGTAAGCATC	.	135.0	52.0	103.0	0.0	.	91
ZNF225	7768	hgsc.bcm.edu;bcgsc.ca	37	19	44635250	44635250	+	Silent	SNP	C	C	A	rs201221735	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_013362	exon5	c.C483A	p.S161S	TGTCTCCGTCCTT	.	121.0	5.0	103.0	0.0	C|0.999;T|0.000	.
ZNF311	282890	hgsc.bcm.edu;bcgsc.ca	37	6	28967374	28967374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF311	NM_001010877	exon5	c.A200G	p.E67G	ACATCCTCAAATG	.	91.0	4.0	84.0	0.0	.	22
ZNF333	84449	hgsc.bcm.edu;bcgsc.ca	37	19	14815924	14815924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF333	NM_032433	exon6	c.C365T	p.P122L	AGACACCATTGAC	.	72.0	4.0	90.0	0.0	.	92
ZNF610	162963	hgsc.bcm.edu;bcgsc.ca	37	19	52856964	52856964	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF610,NS,carcinoma,0	ZNF610	NM_001161427	exon4	c.C93T	p.I31I	GGCCATCGAATTC	.	73.0	4.0	66.0	0.0	.	93
ZNF646	9726	hgsc.bcm.edu;bcgsc.ca	37	16	31088245	31088245	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF646	NM_014699	exon2	c.C600T	p.P200P	TCTCCCCATCCCA	.	71.0	6.0	91.0	0.0	.	153
ZNF655	79027	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99170201	99170201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF655	NM_001085368	exon4	c.A575G	p.D192G	ATACCGATGACAA	.	44.0	5.0	60.0	0.0	.	91
ZNF710	374655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90610374	90610374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF710	NM_198526	exon2	c.A5G	p.E2G	GGATGGAGGGCTT	.	86.0	42.0	104.0	0.0	.	90
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	60628300	60628301	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	.	.	.	p.P68S	GCTGCCGCCGGGC	.	25.0	17.0	18.0	0.0	.	.
