Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AADAC	13	ucsc.edu;bcgsc.ca	37	3	151545702	151545702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AADAC	NM_001086	exon5	c.C942A	p.F314L	AGGGTTCCTAGAT	.	35.0	4.0	39.0	0.0	.	280
ABCC8	6833	ucsc.edu;bcgsc.ca	37	11	17464837	17464837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCC8	NM_000352	exon9	c.T1355C	p.L452P	TAGTAGAGGAGAA	.	40.0	4.0	28.0	0.0	.	91
ACADVL	37	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7124266	7124266	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACADVL	NM_001270447	exon7	c.T435C	p.N145N	CAAGAATGACGCT	.	40.0	9.0	52.0	0.0	.	93
ACAN	176	ucsc.edu;bcgsc.ca	37	15	89386656	89386656	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACAN	NM_001135	exon6	c.G828A	p.L276L	GCGGCTGGGTGCC	.	44.0	4.0	51.0	0.0	.	25
ACVRL1	94	ucsc.edu;bcgsc.ca	37	12	52309854	52309854	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACVRL1	NM_000020	exon8	c.C1083T	p.Y361Y	CGATTACCTGGAC	.	29.0	4.0	25.0	0.0	.	521
ADAM32	203102	ucsc.edu;bcgsc.ca	37	8	39022554	39022554	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAM32	NM_145004	exon9	c.C672T	p.F224F	GATGTTCACCCAA	.	30.0	4.0	104.0	0.0	.	227
ADAMTS14	140766	ucsc.edu;bcgsc.ca	37	10	72511295	72511295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS14	NM_139155	exon17	c.A2498G	p.E833G	TCCATGAGGACCT	.	38.0	4.0	39.0	0.0	.	232
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77389917	77389917	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS18	NM_199355	exon9	c.C1380A	p.I460I	AGACATGATATTG	.	41.0	4.0	87.0	0.0	.	1036
ADAMTS8	11095	ucsc.edu;bcgsc.ca	37	11	130278752	130278752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS8	NM_007037	exon7	c.C1834T	p.P612S	ACTTGGGGACCCA	.	28.0	4.0	50.0	0.0	.	226
ADAMTSL3	57188	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84651559	84651559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTSL3	NM_207517	exon21	c.T3179C	p.L1060S	CTCTGTTAGGCCA	.	43.0	20.0	66.0	1.0	.	1153
ADSS	159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	244595870	244595870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADSS	NM_001126	exon4	c.T383A	p.I128N	GATATAATAAGCC	.	783.0	32.0	572.0	0.0	.	229
AGPAT3	56894	broad.mit.edu;ucsc.edu	37	21	45397993	45397993	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AGPAT3	NM_001037553	exon7	c.C834G	p.Y278X	ACTGTACCAGGAG	.	10.0	5.0	23.0	0.0	.	90
AHNAK	79026	ucsc.edu;bcgsc.ca	37	11	62288148	62288148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AHNAK	NM_001620	exon5	c.T13741C	p.F4581L	TTTTAAATTTGGG	.	36.0	4.0	82.0	1.0	.	109
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86273744	86273744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKAP13	NM_006738	exon30	c.A7100G	p.E2367G	CTGCAGAACAACT	.	39.0	4.0	35.0	0.0	.	258
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283297	74283298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALB	NM_000477	exon11	c.1339_1340insT	p.L447fs	CCAACTCTTGTAG	.	51.0	42.0	112.0	0.0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALB	NM_000477	exon11	c.1428_1428del	p.476_476del	AGACTATGTGAGT	.	23.0	20.0	61.0	0.0	.	96
ALK	238	ucsc.edu;bcgsc.ca	37	2	29445233	29445233	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALK	NM_004304	exon22	c.C3492T	p.F1164F	CATGAGGAAATCC	.	26.0	4.0	43.0	0.0	.	3833
ALK	238	ucsc.edu;bcgsc.ca	37	2	29455312	29455312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALK	NM_004304	exon15	c.G2490T	p.M830I	ATCCTTCATCTGA	.	18.0	5.0	33.0	0.0	.	3833
ALPI	248	broad.mit.edu;bcgsc.ca	37	2	233322981	233322981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALPI	NM_001631	exon9	c.A1046G	p.E349G	TCACTGAGGCGGT	.	99.0	5.0	100.0	0.0	.	90
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46430118	46430118	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMBRA1	NM_001267782	exon19	c.A3357G	p.T1119T	AGTCTGTGTTTCG	.	55.0	5.0	50.0	0.0	.	136
AMPD1	270	ucsc.edu;bcgsc.ca	37	1	115217493	115217493	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMPD1	NM_000036	exon13	c.G1779A	p.K593K	TCGTTCCCTGGGG	.	50.0	6.0	65.0	0.0	.	293
ANKMY1	51281	ucsc.edu;bcgsc.ca	37	2	241492433	241492433	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKMY1	NM_017844	exon4	c.G378A	p.L126L	GGTACCCAGGCCA	.	51.0	6.0	51.0	0.0	.	90
ANKRD10	55608	ucsc.edu;bcgsc.ca	37	13	111536109	111536109	+	Silent	SNP	C	C	T	rs201341958		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD10	NM_017664	exon5	c.G723A	p.T241T	GCCATTCGTGAGT	.	20.0	4.0	36.0	0.0	C|0.999;T|0.001	226
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27389068	27389068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD26	NM_014915	exon1	c.A188G	p.Q63R	ATCTGCTGCACTT	.	50.0	7.0	42.0	0.0	.	138
ANKRD30B	374860	broad.mit.edu;bcgsc.ca	37	18	14850376	14850376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD30B	NM_001145029	exon35	c.A3202G	p.N1068D	AATTTGAATCAGG	.	174.0	9.0	251.0	0.0	.	24
ANKS6	203286	ucsc.edu;bcgsc.ca	37	9	101552846	101552846	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKS6	NM_173551	exon2	c.G402A	p.G134G	ATCAGCCCCGTGA	.	44.0	4.0	106.0	0.0	.	92
AOC2	314	ucsc.edu;bcgsc.ca	37	17	41001156	41001156	+	Missense_Mutation	SNP	C	C	T	rs138179430	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AOC2	NM_009590	exon2	c.C1642T	p.P548S	GCTGCCCCCTGGA	.	47.0	4.0	45.0	0.0	C|1.000;A|0.000	92
AP3M2	10947	ucsc.edu;bcgsc.ca	37	8	42012433	42012433	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AP3M2	NM_001134296	exon3	c.T228C	p.P76P	CCCCCCTCTGTTT	.	38.0	4.0	110.0	1.0	.	90
APOBEC3G	60489	ucsc.edu;bcgsc.ca	37	22	39482347	39482347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APOBEC3G	NM_021822	exon6	c.C799A	p.P267T	GTGATTCCCTTTT	.	39.0	4.0	48.0	0.0	.	227
ARHGAP27	201176	ucsc.edu;bcgsc.ca	37	17	43475409	43475409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP27	NM_199282	exon10	c.G725A	p.R242Q	CGGCTCCGTAGCT	.	41.0	4.0	46.0	0.0	.	90
ARHGAP28	79822	ucsc.edu;bcgsc.ca	37	18	6851048	6851048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP28	NM_001010000	exon3	c.G82A	p.G28S	ACCTGTGGCAACC	.	42.0	4.0	58.0	0.0	.	91
ARHGEF12	23365	ucsc.edu;bcgsc.ca	37	11	120329986	120329986	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF12	NM_015313	exon26	c.A2484G	p.L828L	AGAGCTACGGAAA	.	32.0	4.0	52.0	0.0	.	661
ARHGEF17	9828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73022229	73022229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF17	NM_014786	exon1	c.C2546T	p.P849L	GGGAGCCCATCCG	.	45.0	15.0	91.0	0.0	.	227
ARNT2	9915	ucsc.edu;bcgsc.ca	37	15	80800523	80800523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARNT2	NM_014862	exon6	c.A649G	p.T217A	ACTGGGACGGTCA	.	57.0	5.0	79.0	0.0	.	175
ASPG	374569	ucsc.edu;bcgsc.ca	37	14	104570684	104570684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001080464	exon8	c.A797G	p.E266G	TCATGGAGACCTT	.	29.0	4.0	53.0	0.0	.	.
ASXL1	171023	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31021262	31021262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASXL1	NM_015338	exon11	c.A1261G	p.R421G	AGAGCCAGAAGGA	.	42.0	5.0	51.0	0.0	.	2057
ATCAY	85300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3905457	3905457	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATCAY	NM_033064	exon4	c.C162T	p.N54N	TTTCAACGGAGCG	.	42.0	10.0	61.0	0.0	.	67
ATM	472	ucsc.edu;bcgsc.ca	37	11	108121612	108121612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATM	NM_000051	exon10	c.A1420G	p.S474G	CTAGAAAGCTCAC	.	44.0	5.0	70.0	0.0	.	3419
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36050920	36050920	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP4A	NM_000704	exon7	c.C843T	p.I281I	CGATGCGATGCGC	.	43.0	4.0	70.0	0.0	.	91
AZU1	566	ucsc.edu;bcgsc.ca	37	19	831774	831774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AZU1	NM_001700	exon5	c.C653T	p.S218F	CCTTTTCCCTGGG	.	32.0	4.0	67.0	0.0	.	91
BIK	638	ucsc.edu;bcgsc.ca	37	22	43520125	43520125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BIK	NM_001197	exon2	c.A97G	p.T33A	GGCATGACTGACT	.	37.0	4.0	61.0	0.0	.	651
BLOC1S2	282991	ucsc.edu;bcgsc.ca	37	10	102045885	102045885	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BLOC1S2	NM_173809	exon2	c.A141G	p.K47K	GGCCATTTTGGAG	.	36.0	4.0	30.0	0.0	.	91
BRCA2	675	ucsc.edu;bcgsc.ca	37	13	32931936	32931936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRCA2	NM_000059	exon16	c.T7675C	p.S2559P	GCAGAGTCTTTTC	.	37.0	5.0	65.0	1.0	.	3153
BRF1	2972	ucsc.edu;bcgsc.ca	37	14	105739127	105739127	+	Missense_Mutation	SNP	G	G	T	rs199564741	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRF1	NM_001519	exon3	c.C370A	p.R124S	GGCCGCGGGTCAG	.	23.0	4.0	44.0	0.0	G|0.999;A|0.000	155
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694892	49694892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BSN	NM_003458	exon5	c.C7903T	p.R2635C	CTTCCCCGCCACT	.	34.0	7.0	54.0	0.0	.	97
C2CD2L	9854	ucsc.edu;bcgsc.ca	37	11	118983537	118983537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C2CD2L	NM_014807	exon10	c.C1340A	p.T447N	TTGTCACCACAGT	.	39.0	5.0	41.0	0.0	.	68
C3orf30	152405	ucsc.edu;bcgsc.ca	37	3	118870136	118870136	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C3orf30	NM_152539	exon3	c.A1608G	p.V536V	CCAGGTATAGAAT	.	40.0	5.0	41.0	0.0	.	92
C9orf91	203197	ucsc.edu;bcgsc.ca	37	9	117386639	117386639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C9orf91	NM_153045	exon3	c.A116G	p.N39S	TCCACAATGGCCA	.	35.0	4.0	81.0	0.0	.	91
CABS1	85438	ucsc.edu;bcgsc.ca	37	4	71201464	71201464	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CABS1	NM_033122	exon1	c.A708G	p.E236E	TGAAGAAGAGAAA	.	42.0	4.0	88.0	0.0	.	93
CAMSAP1	157922	ucsc.edu;bcgsc.ca	37	9	138713378	138713378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAMSAP1	NM_015447	exon11	c.G3129T	p.Q1043H	TTGCTGCTGAGAG	.	41.0	4.0	63.0	0.0	.	92
CAPG	822	ucsc.edu;bcgsc.ca	37	2	85628952	85628952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAPG	NM_001256140	exon3	c.T152C	p.L51P	TTGTGCAGCACTA	.	61.0	7.0	87.0	0.0	.	204
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104820474	104820474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CASP4	NM_001225	exon5	c.A577G	p.T193A	GTCTGGTAGCAAA	.	50.0	10.0	101.0	0.0	.	660
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	16	88949122	88949122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CBFA2T3	NM_005187	exon8	c.G1165A	p.E389K	CACGCTCTGTGAG	.	31.0	6.0	41.0	0.0	.	722
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123665744	123665744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC14	NM_022757	exon7	c.T1128A	p.D376E	CTGTACATCCTTC	.	63.0	9.0	74.0	0.0	.	68
CCDC171	203238	ucsc.edu;bcgsc.ca	37	9	15971645	15971645	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_173550	exon26	c.A3792G	p.S1264S	TCCTTCAAGAGCT	.	31.0	4.0	77.0	0.0	.	.
CCDC88B	283234	ucsc.edu;bcgsc.ca	37	11	64111852	64111852	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC88B	NM_032251	exon14	c.A1839G	p.K613K	GACCAAAATTCAG	.	40.0	4.0	96.0	0.0	.	94
CCT4	10575	ucsc.edu;bcgsc.ca	37	2	62099701	62099701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCT4	NM_006430	exon11	c.G1148A	p.G383E	GTTTTTCCAGGGC	.	57.0	6.0	98.0	0.0	.	92
CD101	9398	ucsc.edu;bcgsc.ca	37	1	117560028	117560028	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD101	NM_001256109	exon5	c.G1545A	p.E515E	ATCTGAGAAGTCT	.	42.0	4.0	68.0	0.0	.	94
CD109	135228	ucsc.edu;bcgsc.ca	37	6	74473386	74473386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD109	NM_133493	exon10	c.C1085T	p.P362L	TGAAGCCATCTCT	.	48.0	4.0	103.0	0.0	.	155
CD163L1	283316	ucsc.edu;bcgsc.ca	37	12	7527298	7527298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD163L1	NM_174941	exon13	c.A3149G	p.E1050G	TAGATCTCTACTC	.	30.0	4.0	43.0	0.0	.	100
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15839760	15839760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD38	NM_001775	exon5	c.T631C	p.S211P	AATGGATCCCGCA	.	54.0	33.0	59.0	0.0	.	92
CD4	920	ucsc.edu;bcgsc.ca	37	12	6923451	6923451	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD4	NM_000616	exon4	c.T358C	p.L120L	GTGCAATTGCTAG	.	43.0	4.0	70.0	0.0	.	90
CDK9	1025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130550943	130550943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDK9	NM_001261	exon6	c.G725T	p.S242I	TCATCAGTCAGCT	.	59.0	44.0	144.0	1.0	.	521
CDKN1A	1026	broad.mit.edu;bcgsc.ca	37	6	36651880	36651880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKN1A	NM_001220778	exon2	c.T2G	p.M1R	GCGCCATGTCAGA	.	50.0	47.0	57.0	1.0	.	872
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	36651881	36651881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKN1A	NM_001220778	exon2	c.G3T	p.M1I	CGCCATGTCAGAA	.	50.0	45.0	56.0	0.0	.	872
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151679702	151679702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CELF3	NM_007185	exon8	c.G841A	p.G281S	TGTAGCCGTTGAC	.	125.0	17.0	103.0	0.0	.	91
CEP192	55125	ucsc.edu;bcgsc.ca	37	18	13049025	13049025	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP192	NM_032142	exon16	c.C2235T	p.T745T	TAAAACCAGAGAC	.	58.0	5.0	81.0	0.0	.	27
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	423911	423911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHL1	NM_001253388	exon15	c.G1926T	p.R642S	GAACAGGAGTGTT	.	78.0	27.0	95.0	0.0	.	583
CHRM4	1132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46406927	46406927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_000741	exon1	c.G1181A	p.R394Q	CGCTCCCGGGCCG	.	89.0	23.0	73.0	0.0	.	.
CNDP2	55748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72185845	72185845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNDP2	NM_018235	exon10	c.T1180A	p.Y394N	CCTCATTACCTGG	.	36.0	7.0	45.0	1.0	.	93
CNIH2	254263	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	66050758	66050758	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNIH2	NM_182553	exon5	c.T351G	p.Y117X	CATGTATGATGCG	.	33.0	19.0	62.0	0.0	.	90
CNKSR3	154043	ucsc.edu;bcgsc.ca	37	6	154727645	154727645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNKSR3	NM_173515	exon13	c.G1511T	p.R504M	TAGCACCTGCTTC	.	43.0	4.0	89.0	0.0	.	26
CNOT1	23019	ucsc.edu;bcgsc.ca	37	16	58568277	58568277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNOT1	NM_016284	exon40	c.A5669G	p.K1890R	TCGGTCTTCAGTA	.	22.0	4.0	23.0	0.0	.	95
CNTNAP2	26047	ucsc.edu;bcgsc.ca	37	7	146818167	146818167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTNAP2	NM_014141	exon6	c.A851G	p.Q284R	AGCGCCAGGGGCG	.	35.0	4.0	55.0	0.0	.	100
COL15A1	1306	ucsc.edu;bcgsc.ca	37	9	101782702	101782702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL15A1	NM_001855	exon12	c.A1679G	p.Q560R	AAGGACAGGCTGG	.	38.0	5.0	77.0	0.0	.	96
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111082761	111082761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL4A2	NM_001846	exon9	c.A563G	p.E188G	CTGGAGAGCCTGG	.	76.0	27.0	114.0	0.0	.	95
COL5A2	1290	ucsc.edu;bcgsc.ca	37	2	189927993	189927993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL5A2	NM_000393	exon27	c.G1774T	p.A592S	CTGGCGCACCCTA	.	23.0	4.0	28.0	0.0	.	92
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130289820	130289820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL6A6	NM_001102608	exon6	c.G2560A	p.A854T	AAGTATGCTGATG	.	88.0	16.0	93.0	0.0	.	76
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101802222	101802222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPN1	NM_001308	exon9	c.G1339A	p.E447K	CCATTTCTTTCTT	.	83.0	35.0	80.0	0.0	.	227
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207641906	207641906	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CR2	NM_001006658	exon3	c.C480T	p.I160I	TATGATCCACAAT	.	293.0	160.0	239.0	0.0	.	232
CREBBP	1387	ucsc.edu;bcgsc.ca	37	16	3801728	3801728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CREBBP	NM_004380	exon20	c.A3778G	p.T1260A	CTTACGTCTGGGG	.	38.0	4.0	53.0	0.0	.	1807
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43274043	43274043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRIP3	NM_206922	exon6	c.G409A	p.V137M	ACATCACCTTCTC	.	53.0	50.0	43.0	0.0	.	91
CRTC3	64784	ucsc.edu;bcgsc.ca	37	15	91185335	91185335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRTC3	NM_022769	exon15	c.C1823A	p.P608H	TGGACCCCTCTGT	.	31.0	4.0	61.0	2.0	.	393
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2999990	2999990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD1	NM_033225	exon41	c.C6238A	p.Q2080K	TACCTTGGTAAGC	.	37.0	5.0	100.0	0.0	.	86
CTDSP2	10106	ucsc.edu;bcgsc.ca	37	12	58221372	58221372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTDSP2	NM_005730	exon3	c.C215T	p.S72L	AGATCCGACTGAG	.	42.0	4.0	51.0	0.0	.	514
CTNNB1	1499	broad.mit.edu;bcgsc.ca	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	TACCTGGACTCTG	.	155.0	8.0	144.0	0.0	G|1.000;T|0.000	24361
CTTNBP2	83992	ucsc.edu;bcgsc.ca	37	7	117451007	117451007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTTNBP2	NM_033427	exon3	c.G226A	p.G76R	ATCTCCCATACCG	.	45.0	4.0	53.0	0.0	.	94
CXorf58	254158	ucsc.edu;bcgsc.ca	37	X	23953505	23953505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CXorf58	NM_152761	exon7	c.A748G	p.I250V	CAAGAGATCCATA	.	37.0	4.0	32.0	0.0	.	130
CYP11B1	1584	ucsc.edu;bcgsc.ca	37	8	143958298	143958298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CYP11B1	NM_000497	exon4	c.G599A	p.S200N	AAGTTGCTGGCTG	.	44.0	4.0	45.0	0.0	.	94
DCTN3	11258	ucsc.edu;bcgsc.ca	37	9	34614117	34614117	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTN3	NM_024348	exon6	c.C490T	p.L164L	AGTGTAGCACAGA	.	31.0	4.0	34.0	0.0	.	90
DCTN6	10671	ucsc.edu;bcgsc.ca	37	8	30038060	30038060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTN6	NM_006571	exon6	c.A388G	p.N130D	TGTTGCAACCTAA	.	46.0	4.0	132.0	1.0	.	91
DHX34	9704	ucsc.edu;bcgsc.ca	37	19	47856347	47856347	+	Missense_Mutation	SNP	C	C	A	rs184418357	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX34	NM_014681	exon2	c.C60A	p.S20R	TCCCAGCGAGGAA	.	36.0	4.0	45.0	0.0	C|0.999;T|0.000	231
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182852382	182852382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX9	NM_001357	exon25	c.A3023T	p.E1008V	ATAAGGAAAAGAG	.	156.0	83.0	129.0	0.0	.	92
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118485268	118485268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DMXL1	NM_005509	exon18	c.C3746T	p.P1249L	AAGAACCTGTTAT	.	56.0	35.0	56.0	0.0	.	92
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124257438	124257438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon4	c.C271T	p.P91S	CCTCTTCCCGAGG	.	59.0	32.0	53.0	0.0	.	95
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124257449	124257449	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon4	c.C282T	p.F94F	GGAGTTCCTGGAC	.	58.0	33.0	58.0	0.0	.	95
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84896485	84896485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH6	NM_001370	exon38	c.A6157T	p.I2053F	GAACGAATCATAC	.	106.0	5.0	141.0	0.0	.	69
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84852030	84852030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH6	NM_001370	exon29	c.G4358T	p.R1453L	AGGATCGCTGCTA	.	86.0	34.0	129.0	0.0	.	69
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11806049	11806049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH9	NM_001372	exon60	c.T11420C	p.M3807T	CATCAATGGAAGA	.	36.0	4.0	47.0	0.0	.	168
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138764241	138764241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAJC18	NM_152686	exon3	c.C359A	p.T120K	GCATCTGTTGCTC	.	81.0	26.0	60.0	0.0	.	227
DSEL	92126	ucsc.edu;bcgsc.ca	37	18	65181701	65181701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSEL	NM_032160	exon2	c.G175T	p.D59Y	TGAAATCTTGCAC	.	38.0	5.0	54.0	0.0	.	157
DSG4	147409	ucsc.edu;bcgsc.ca	37	18	28991246	28991246	+	Silent	SNP	G	G	A	rs143025218		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSG4	NM_001134453	exon14	c.G2247A	p.S749S	TGTATCGGGAGTG	.	50.0	5.0	54.0	0.0	A|0.000;C|0.000;G|1.000	177
DYNC1H1	1778	ucsc.edu;bcgsc.ca	37	14	102469021	102469021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYNC1H1	NM_001376	exon22	c.G4690A	p.E1564K	CCAGTGGAAACCC	.	43.0	4.0	111.0	0.0	.	98
DYSF	8291	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71778194	71778194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYSF	NM_001130982	exon19	c.C1642A	p.P548T	TTCCTCCCCACTT	.	79.0	24.0	92.0	2.0	.	158
EDC4	23644	ucsc.edu;bcgsc.ca	37	16	67911468	67911468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EDC4	NM_014329	exon6	c.G698T	p.R233L	ACTTTCGCAGGAT	.	45.0	4.0	34.0	0.0	.	92
EFCAB4B	84766	ucsc.edu;bcgsc.ca	37	12	3782653	3782653	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFCAB4B	NM_001144958	exon7	c.A630G	p.E210E	ATGGGCTTCTTGG	.	40.0	4.0	55.0	0.0	.	92
EIF4G3	8672	ucsc.edu;bcgsc.ca	37	1	21133841	21133841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EIF4G3	NM_001198801	exon35	c.G4837A	p.E1613K	CTGCTTCCCGCAG	.	46.0	4.0	72.0	0.0	.	91
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95226823	95226823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ELL2	NM_012081	exon10	c.G1745T	p.G582V	TTTGAGCCTGGAG	.	145.0	86.0	119.0	0.0	.	90
EPHA1	2041	ucsc.edu;bcgsc.ca	37	7	143096773	143096773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPHA1	NM_005232	exon4	c.A806G	p.E269G	CCTTCCTCATAGC	.	43.0	4.0	43.0	1.0	.	1436
ESRP2	80004	ucsc.edu;bcgsc.ca	37	16	68265213	68265213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ESRP2	NM_024939	exon12	c.C1579A	p.R527S	GGCAACGCTGAGC	.	49.0	4.0	83.0	0.0	.	91
EXOC2	55770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	592543	592543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC2	NM_018303	exon11	c.G1118A	p.C373Y	CCAATGCATTGCC	.	95.0	14.0	56.0	0.0	.	662
EZR	7430	ucsc.edu;bcgsc.ca	37	6	159197498	159197498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EZR	NM_003379	exon7	c.G737A	p.R246K	ATGTTCCTGATTT	.	43.0	4.0	68.0	0.0	.	70
FAF1	11124	ucsc.edu;bcgsc.ca	37	1	50941323	50941323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAF1	NM_007051	exon18	c.T1682C	p.L561P	GGAGGCAGGGCTT	.	34.0	4.0	36.0	0.0	.	652
FAM120C	54954	ucsc.edu;bcgsc.ca	37	X	54160309	54160309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM120C	NM_017848	exon8	c.C1787A	p.T596N	GGAATGGTGATAT	.	47.0	4.0	32.0	0.0	.	131
FAM179A	165186	ucsc.edu;bcgsc.ca	37	2	29259442	29259442	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM179A	NM_199280	exon18	c.C2454A	p.S818S	GGATTCCAACAAG	.	56.0	5.0	74.0	0.0	.	26
FAM179B	23116	ucsc.edu;bcgsc.ca	37	14	45432959	45432959	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM179B	NM_015091	exon1	c.G1335A	p.A445A	GCTGGCGGACAAC	.	26.0	4.0	51.0	1.0	.	93
FAM189A2	9413	ucsc.edu;bcgsc.ca	37	9	71992542	71992542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM189A2	NM_004816	exon6	c.T376C	p.S126P	CAGATTTCTGCTG	.	36.0	4.0	58.0	1.0	.	90
FAM221B	392307	ucsc.edu;bcgsc.ca	37	9	35826000	35826000	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001012446	exon2	c.C159A	p.T53T	TTCAGAGGTATGG	.	33.0	4.0	59.0	0.0	.	.
FAM49B	51571	ucsc.edu;bcgsc.ca	37	8	130874579	130874579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM49B	NM_016623	exon5	c.C197T	p.A66V	TGGATTGCCTTCA	.	53.0	4.0	43.0	0.0	.	90
FAM71E1	112703	ucsc.edu;bcgsc.ca	37	19	50979111	50979111	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM71E1	NM_138411	exon2	c.C339A	p.I113I	CTCAAAGATGGGG	.	41.0	4.0	44.0	0.0	.	44
FBN1	2200	ucsc.edu;bcgsc.ca	37	15	48766571	48766571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN1	NM_000138	exon34	c.T4091A	p.L1364Q	TCGTCCAGATCTT	.	40.0	4.0	40.0	0.0	.	92
FBN2	2201	ucsc.edu;bcgsc.ca	37	5	127730952	127730952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN2	NM_001999	exon9	c.T1094C	p.M365T	AAACACATGCCTG	.	38.0	5.0	30.0	0.0	.	146
FCF1	51077	ucsc.edu;bcgsc.ca	37	14	75200777	75200777	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FCF1	NM_015962	exon7	c.454-2A>G	.	TCTTACAGCATAA	.	50.0	4.0	71.0	0.0	.	91
FER1L5	90342	ucsc.edu;bcgsc.ca	37	2	97338889	97338889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FER1L5	NM_001113382	exon18	c.C1552A	p.L518M	AAAGAGCTGATCC	.	51.0	7.0	56.0	0.0	.	23
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50514900	50514900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FIGNL1	NM_001042762	exon4	c.C86T	p.P29L	GCCTTCGGTCCGG	.	70.0	20.0	82.0	0.0	.	93
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216238044	216238044	+	Splice_Site	SNP	C	C	G	rs111852829	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FN1	NM_212482	exon40	c.6247+1G>C	.	CTCTTACCTGTCT	.	238.0	36.0	253.0	1.0	G|1.000	584
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39265055	39265055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FREM2	NM_207361	exon1	c.G3574T	p.E1192X	CAGCCAGAGATGT	.	55.0	44.0	136.0	0.0	.	100
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132585166	132585166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FSTL4	NM_015082	exon7	c.G830A	p.R277K	GGTGGCCTCAGGT	.	91.0	13.0	74.0	0.0	.	91
FUS	2521	broad.mit.edu;bcgsc.ca	37	16	31193931	31193931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FUS	NM_001170634	exon3	c.G136C	p.D46H	TCCACGGACACTT	.	98.0	6.0	95.0	0.0	.	1719
FZD9	8326	ucsc.edu;bcgsc.ca	37	7	72849142	72849142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FZD9	NM_003508	exon1	c.T805C	p.F269L	ATCATCTTCCTCT	.	42.0	5.0	48.0	0.0	.	1082
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34022378	34022378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GDF5	NM_000557	exon2	c.G835A	p.D279N	GCACATCCAGCAA	.	51.0	12.0	50.0	0.0	.	226
GGT7	2686	ucsc.edu;bcgsc.ca	37	20	33447305	33447305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GGT7	NM_178026	exon7	c.A955G	p.T319A	CGGAGGTGCCAAG	.	37.0	4.0	38.0	1.0	.	91
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47681793	47681793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR115	NM_153838	exon6	c.G812A	p.G271E	TCTTAGGAATGGT	.	93.0	24.0	61.0	0.0	.	160
GPR124	25960	ucsc.edu;bcgsc.ca	37	8	37687398	37687398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR124	NM_032777	exon6	c.A584G	p.D195G	CCTGTGACTGCCA	.	21.0	4.0	58.0	0.0	.	157
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246970	97246970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR63	NM_030784	exon2	c.T638C	p.L213S	ACGGCTAAAGGAA	.	25.0	15.0	58.0	0.0	.	92
GRID2IP	392862	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	6554130	6554130	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145118	exon8	c.C1299A	p.Y433X	CACAGGGTAGACG	.	15.0	8.0	14.0	0.0	.	.
GRM2	2912	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	51749875	51749875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRM2	NM_000839	exon4	c.G2086A	p.A696T	GTGGTCGCCTGGC	.	20.0	4.0	42.0	0.0	.	522
GRSF1	2926	ucsc.edu;bcgsc.ca	37	4	71698873	71698873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_002092	exon3	c.A632G	p.E211G	TGCTTCTCTAAGG	.	35.0	4.0	77.0	0.0	.	.
GRXCR1	389207	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	42895631	42895631	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRXCR1	NM_001080476	exon1	c.C348T	p.G116G	TGCTGGCCAGGCT	.	20.0	7.0	50.0	1.0	.	23
GTF3C1	2975	ucsc.edu;bcgsc.ca	37	16	27474886	27474886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GTF3C1	NM_001520	exon35	c.A5900G	p.N1967S	GAGATGTTGGCAG	.	36.0	4.0	36.0	0.0	.	94
GUCY1B3	2983	ucsc.edu;bcgsc.ca	37	4	156715007	156715007	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_000857	exon6	c.496-1G>T	.	TATCCAGGTTATT	.	44.0	4.0	97.0	1.0	.	.
HECW1	23072	ucsc.edu;bcgsc.ca	37	7	43506065	43506065	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HECW1	NM_015052	exon15	c.A2811G	p.S937S	AGGGTCACTTTCT	.	56.0	4.0	53.0	1.0	.	669
HTR1B	3351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	78172410	78172410	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HTR1B	NM_000863	exon1	c.C711T	p.S237S	AATCCGGGAGCGG	.	23.0	19.0	37.0	0.0	.	90
HUNK	30811	ucsc.edu;bcgsc.ca	37	21	33340670	33340670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HUNK	NM_014586	exon6	c.T983C	p.V328A	GCAAAGTGCCCTG	.	23.0	4.0	56.0	0.0	.	334
IGSF10	285313	ucsc.edu;bcgsc.ca	37	3	151155692	151155692	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGSF10	NM_178822	exon6	c.T6657C	p.S2219S	ATCCCCACTGGGA	.	39.0	4.0	49.0	0.0	.	102
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118621409	118621409	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGSF11	NM_001015887	exon7	c.T1254C	p.P418P	CATGACAGGTACT	.	94.0	8.0	105.0	0.0	.	90
IKZF4	64375	ucsc.edu;bcgsc.ca	37	12	56428968	56428968	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IKZF4	NM_022465	exon8	c.C1611T	p.I537I	CCGTATCCTCTTC	.	41.0	4.0	37.0	0.0	.	205
IL12B	3593	ucsc.edu;bcgsc.ca	37	5	158750288	158750288	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL12B	NM_002187	exon3	c.G138A	p.V46V	GAGGACCACCATT	.	44.0	5.0	53.0	1.0	.	90
IL33	90865	ucsc.edu;bcgsc.ca	37	9	6251188	6251188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL33	NM_001199640	exon4	c.C266T	p.S89F	AGCAGTCTACTGT	.	39.0	4.0	54.0	0.0	.	90
IMPDH1	3614	ucsc.edu;bcgsc.ca	37	7	128038520	128038520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IMPDH1	NM_000883	exon10	c.A1022G	p.D341G	TATTTGTCATCCT	.	42.0	4.0	63.0	0.0	.	230
INF2	64423	ucsc.edu;bcgsc.ca	37	14	105175662	105175662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INF2	NM_022489	exon11	c.C1994T	p.T665I	ATACCACCAAGTT	.	26.0	4.0	37.0	0.0	.	492
INF2	64423	ucsc.edu;bcgsc.ca	37	14	105178003	105178003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INF2	NM_022489	exon16	c.C2456T	p.P819L	AGCTGCCCCGGGA	.	41.0	4.0	80.0	0.0	.	492
INPP4B	8821	ucsc.edu;bcgsc.ca	37	4	143043367	143043367	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INPP4B	NM_003866	exon22	c.C2049A	p.A683A	GCCAACGGCCATG	.	48.0	5.0	54.0	0.0	.	228
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155094019	155094019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INSIG1	NM_005542	exon4	c.G596A	p.G199D	CTTTGGGCCTTTG	.	209.0	41.0	246.0	0.0	.	90
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91020941	91020941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IQGAP1	NM_003870	exon26	c.C3149T	p.T1050M	ATCCTACGGTTAT	.	67.0	15.0	63.0	0.0	.	950
ISL1	3670	ucsc.edu;bcgsc.ca	37	5	50685754	50685754	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ISL1	NM_002202	exon4	c.C753T	p.P251P	GCAGCCCAATGAC	.	42.0	4.0	34.0	0.0	.	515
KBTBD3	143879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105925003	105925003	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KBTBD3	NM_152433	exon3	c.C413G	p.S138C	GCTTTGGATAGGA	.	72.0	26.0	138.0	0.0	.	91
KCNB2	9312	ucsc.edu;bcgsc.ca	37	8	73849698	73849698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNB2	NM_004770	exon3	c.C2108A	p.S703Y	AGAGCTCTCTAAA	.	49.0	4.0	40.0	0.0	.	158
KCNK10	54207	ucsc.edu;bcgsc.ca	37	14	88654418	88654418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNK10	NM_138318	exon6	c.A904G	p.K302E	GGGGCTTATACCA	.	40.0	4.0	58.0	0.0	.	95
KCNT1	57582	ucsc.edu;bcgsc.ca	37	9	138661869	138661869	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNT1	NM_020822	exon16	c.C1587A	p.L529L	CACCCTCATCACC	.	35.0	4.0	72.0	0.0	.	137
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36788605	36788605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNU1	NM_001031836	exon25	c.G2873T	p.R958I	CTGGAAGAAACCG	.	32.0	5.0	94.0	0.0	.	23
KDM2A	22992	ucsc.edu;bcgsc.ca	37	11	66999328	66999328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM2A	NM_012308	exon12	c.A1376G	p.E459G	AGCTTGAAGGCCT	.	17.0	4.0	42.0	0.0	.	661
KDM4A	9682	ucsc.edu;bcgsc.ca	37	1	44132198	44132198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM4A	NM_014663	exon7	c.T749C	p.L250P	TAATGCTGAAGAA	.	30.0	4.0	49.0	0.0	.	227
KIAA1432	57589	ucsc.edu;bcgsc.ca	37	9	5774022	5774022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1432	NM_020829	exon26	c.G4048A	p.E1350K	ATAACAGAAGAGC	.	48.0	5.0	111.0	0.0	.	90
KIF13B	23303	ucsc.edu;bcgsc.ca	37	8	28988090	28988090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF13B	NM_015254	exon24	c.C3035T	p.A1012V	TCCTTTGCAGAAA	.	35.0	4.0	90.0	0.0	.	22
KIF22	3835	ucsc.edu;bcgsc.ca	37	16	29816207	29816207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF22	NM_007317	exon12	c.C1750A	p.L584I	CCGGAGCTACTGG	.	33.0	4.0	26.0	0.0	.	68
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	30897746	30897746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF3B	NM_004798	exon2	c.166delA	p.T56fs	CCCAAGACCTTCA	.	68.0	19.0	97.0	0.0	.	517
KLK4	9622	ucsc.edu;bcgsc.ca	37	19	51411692	51411692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KLK4	NM_004917	exon4	c.A535G	p.S179G	GCTTACTGCAGAC	.	43.0	5.0	38.0	0.0	.	226
KRT35	3886	ucsc.edu;bcgsc.ca	37	17	39636914	39636914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRT35	NM_002280	exon1	c.T436C	p.S146P	AGTAGGACTGGTA	.	28.0	4.0	40.0	0.0	.	92
KSR1	8844	ucsc.edu;bcgsc.ca	37	17	25944438	25944438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KSR1	NM_014238	exon20	c.T2266C	p.F756L	GGACACTTCTGGA	.	24.0	4.0	22.0	0.0	.	964
L3MBTL1	26013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42143656	42143656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	L3MBTL1	NM_032107	exon5	c.444delC	p.H148fs	GGACCACCCCCAG	.	65.0	22.0	42.0	0.0	.	227
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6975955	6975955	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA1	NM_005559	exon45	c.A6470T	p.Y2157F	CCGAGGTAGAAGA	.	89.0	24.0	109.0	0.0	.	149
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60886538	60886538	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA5	NM_005560	exon72	c.T9861C	p.N3287N	GCTCACATTGACG	.	65.0	23.0	72.0	0.0	.	93
LCP1	3936	ucsc.edu;bcgsc.ca	37	13	46725197	46725197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LCP1	NM_002298	exon8	c.G756T	p.L252F	TTCTCTCAAAAGA	.	31.0	4.0	39.0	0.0	.	685
LEPRE1	64175	ucsc.edu;bcgsc.ca	37	1	43224989	43224989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LEPRE1	NM_001146289	exon3	c.G691T	p.A231S	GCAGCGCCGCCTC	.	50.0	5.0	69.0	0.0	.	94
LINGO2	158038	broad.mit.edu;bcgsc.ca	37	9	27950383	27950383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LINGO2	NM_001258282	exon7	c.T287A	p.V96E	GGTTCCACATTGG	.	92.0	10.0	176.0	1.0	.	516
LUZP4	51213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114541215	114541215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LUZP4	NM_016383	exon4	c.A788G	p.Q263R	CCACTCAGAGAGA	.	104.0	64.0	97.0	1.0	.	132
MADD	8567	ucsc.edu;bcgsc.ca	37	11	47308084	47308084	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MADD	NM_130470	exon15	c.A2652G	p.K884K	TCTGAAAGGTAAC	.	34.0	4.0	40.0	0.0	.	682
MAGEB3	4114	ucsc.edu;bcgsc.ca	37	X	30254253	30254253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAGEB3	NM_002365	exon5	c.C212A	p.T71N	TATCCACCACTAC	.	45.0	4.0	46.0	0.0	.	130
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56415027	56415027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MALT1	NM_006785	exon17	c.G2428A	p.E810K	ACTGATGAAATAC	.	81.0	35.0	100.0	0.0	.	660
MAOA	4128	ucsc.edu;bcgsc.ca	37	X	43571197	43571197	+	Missense_Mutation	SNP	A	A	G	rs1800464	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAOA	NM_000240	exon4	c.A385G	p.R129G	CTGTGGAGGACAA	.	37.0	4.0	53.0	0.0	A|0.740;0|0.061	194
MAP1A	4130	ucsc.edu;bcgsc.ca	37	15	43821659	43821659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP1A	NM_002373	exon4	c.A7988G	p.H2663R	ATGGACACAGCCC	.	29.0	4.0	41.0	0.0	.	141
MBD1	4152	ucsc.edu;bcgsc.ca	37	18	47800080	47800080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD1	NM_001204137	exon13	c.C1375A	p.H459N	GGGTATGGTCTGG	.	46.0	4.0	76.0	0.0	.	228
MBD4	8930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129155490	129155490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD4	NM_003925	exon3	c.A997T	p.I333L	TGTTTATGATGCC	.	143.0	23.0	180.0	0.0	.	228
MCM7	4176	broad.mit.edu;mdanderson.org	37	7	99697309	99697309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCM7	NM_005916	exon3	c.C179G	p.P60R	AACTCGGGGTCAT	.	14.0	8.0	13.0	0.0	.	651
MED12L	116931	ucsc.edu;bcgsc.ca	37	3	150873994	150873994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED12L	NM_053002	exon5	c.G603T	p.K201N	GGCCAAGATTTCT	.	33.0	4.0	41.0	1.0	.	576
METTL12	751071	ucsc.edu;bcgsc.ca	37	11	62434009	62434009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	METTL12	NM_001043229	exon3	c.A209G	p.E70G	TGCAGGAGGCACA	.	31.0	4.0	44.0	1.0	.	22
MFN1	55669	broad.mit.edu;bcgsc.ca	37	3	179069781	179069781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MFN1	NM_033540	exon3	c.A206G	p.E69G	TTGGTGAGGTGCT	.	206.0	11.0	230.0	1.0	.	155
MIR629	693214	ucsc.edu;mdanderson.org	37	15	70371772	70371772	+	RNA	SNP	C	C	A	rs111899904	byfrequency;by1000genomes;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	AGTTCTCCCAACG	.	27.0	9.0	28.0	0.0	C|0.993;T|0.007	.
MLC1	23209	ucsc.edu;bcgsc.ca	37	22	50512719	50512719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLC1	NM_015166	exon8	c.A640G	p.I214V	CAATGATCCCCCC	.	37.0	4.0	39.0	0.0	.	91
MLNR	2862	ucsc.edu;bcgsc.ca	37	13	49796480	49796480	+	Silent	SNP	C	C	A	rs201685217	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLNR	NM_001507	exon2	c.C1206A	p.T402T	CTACACCGAGACA	.	30.0	4.0	56.0	0.0	.	90
MPP4	58538	ucsc.edu;bcgsc.ca	37	2	202552052	202552052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MPP4	NM_033066	exon5	c.C322A	p.Q108K	GCTCTTGGATCTC	.	49.0	4.0	67.0	0.0	.	22
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1026952	1026952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC6	NM_005961	exon19	c.G2383A	p.G795S	CAACACCGGTGGC	.	84.0	30.0	60.0	0.0	.	23
MYLK4	340156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2685624	2685624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYLK4	NM_001012418	exon6	c.G451A	p.E151K	TGATCTCGTTCTT	.	92.0	25.0	75.0	0.0	.	150
MYO1E	4643	ucsc.edu;bcgsc.ca	37	15	59470655	59470655	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO1E	NM_004998	exon19	c.C1986A	p.V662V	CATGTTGACCGAC	.	46.0	6.0	57.0	0.0	.	514
NAV2	89797	ucsc.edu;bcgsc.ca	37	11	20127077	20127077	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAV2	NM_001244963	exon37	c.A6822G	p.R2274R	CTCCAGATGGGTG	.	67.0	6.0	61.0	0.0	.	96
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36229035	36229036	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NBEA	NM_015678	exon53	c.8016_8017insC	p.V2672fs	CCTCGTTGACCAG	.	45.0	30.0	73.0	0.0	.	144
NCDN	23154	ucsc.edu;bcgsc.ca	37	1	36026742	36026742	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCDN	NM_001014839	exon4	c.A990G	p.K330K	GGTGAAAGAGGAT	.	40.0	4.0	52.0	1.0	.	155
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24844908	24844908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFATC4	NM_001198967	exon8	c.T2105A	p.L702Q	ACCGACTGCAGAG	.	53.0	17.0	96.0	0.0	.	92
NFIB	4781	ucsc.edu;bcgsc.ca	37	9	14179728	14179728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFIB	NM_001190738	exon3	c.C692A	p.P231Q	TTACCTGGAGGAT	.	31.0	4.0	57.0	1.0	.	226
NFYC	4802	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41215259	41215259	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFYC	NM_001142587	exon4	c.A192G	p.E64E	TGCAGAAGCGCCT	.	56.0	13.0	84.0	1.0	.	289
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173322666	173322666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLGN1	NM_014932	exon3	c.G278T	p.R93L	GGGAACGTCGTTT	.	94.0	39.0	102.0	0.0	.	231
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173525610	173525610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLGN1	NM_014932	exon4	c.C634A	p.L212I	TATCGACTTGGAG	.	97.0	52.0	137.0	0.0	.	231
NLRP13	126204	ucsc.edu;bcgsc.ca	37	19	56423971	56423971	+	Silent	SNP	T	T	C	rs149489544	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	NLRP13,NS,carcinoma,0	NLRP13	NM_176810	exon5	c.A1212G	p.E404E	CTCAACTTCACTT	.	60.0	6.0	41.0	0.0	T|1.000;G|0.000	211
NONO	4841	ucsc.edu;bcgsc.ca	37	X	70514267	70514267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NONO	NM_001145408	exon6	c.T539C	p.I180T	TAGTCATTGTGGA	.	41.0	4.0	53.0	0.0	.	231
NPC1L1	29881	ucsc.edu;bcgsc.ca	37	7	44555743	44555743	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPC1L1	NM_013389	exon18	c.C3654A	p.I1218I	GGTGCTGATGGCA	.	76.0	6.0	63.0	0.0	.	94
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2944113	2944113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NRIP2	NM_031474	exon1	c.C37T	p.P13S	AGGAGGGTCTCCA	.	64.0	14.0	88.0	0.0	.	187
NUP188	23511	ucsc.edu;bcgsc.ca	37	9	131765129	131765129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP188	NM_015354	exon37	c.C4171T	p.P1391S	GATGCCCCCTCTT	.	35.0	4.0	45.0	0.0	.	207
NUP214	8021	ucsc.edu;bcgsc.ca	37	9	134004676	134004676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP214	NM_005085	exon4	c.A404T	p.Q135L	AACAGCAAAAACG	.	39.0	4.0	86.0	0.0	.	1131
NUP88	4927	ucsc.edu;bcgsc.ca	37	17	5292266	5292266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP88	NM_002532	exon11	c.C1499A	p.P500Q	GACGCTGGATGGA	.	39.0	4.0	58.0	1.0	.	204
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99474046	99474046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR2AE1	NM_001005276	exon1	c.T611C	p.I204T	AGGAGAATGCTGC	.	51.0	15.0	59.0	0.0	.	90
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310110	124310110	+	Missense_Mutation	SNP	C	C	T	rs147220624	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR8B8	NM_012378	exon1	c.G872A	p.S291N	CTCAGGCTATAAA	.	35.0	16.0	66.0	0.0	C|0.999;A|0.001	69
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310343	124310343	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR8B8	NM_012378	exon1	c.C639A	p.T213T	GAAGATGGTGACT	.	40.0	18.0	86.0	0.0	.	69
OSBPL10	114884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	31705616	31705616	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL10	NM_017784	exon11	c.C2205T	p.R735R	GTTCTCGCGCTTC	.	63.0	13.0	64.0	0.0	.	69
OSBPL10	114884	ucsc.edu;bcgsc.ca	37	3	31871717	31871717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL10	NM_017784	exon4	c.C544T	p.P182S	AGCTTGGAGCACT	.	36.0	4.0	46.0	0.0	.	69
P4HA2	8974	ucsc.edu;bcgsc.ca	37	5	131552900	131552900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	P4HA2	NM_001017974	exon4	c.C321A	p.D107E	AGCTGAGTCCTGC	.	43.0	4.0	30.0	0.0	.	68
PADI1	29943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17563890	17563890	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI1	NM_013358	exon12	c.G1395A	p.S465S	CTACTCGGACTGG	.	49.0	33.0	88.0	1.0	.	68
PADI3	51702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17609432	17609432	+	Missense_Mutation	SNP	G	G	A	rs35624745	bycluster;byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI3	NM_016233	exon16	c.G1853A	p.R618Q	AGGTGCGGTCCCT	.	36.0	14.0	55.0	0.0	G|0.967;A|0.033	132
PADI6	353238	ucsc.edu;bcgsc.ca	37	1	17727872	17727872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI6	NM_207421	exon17	c.T2023C	p.C675R	GACATCTGTGCCT	.	45.0	4.0	58.0	0.0	.	113
PAX8	7849	ucsc.edu;bcgsc.ca	37	2	114002034	114002034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAX8	NM_013952	exon4	c.A359G	p.D120G	ACAGTGTCATTGT	.	30.0	4.0	24.0	0.0	.	684
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164768969	164768969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PBX1	NM_001204963	exon4	c.C544T	p.L182F	ATGAATCTCCTGC	.	83.0	16.0	58.0	0.0	.	659
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233397906	233397906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCNXL2	NM_014801	exon3	c.A365G	p.N122S	TGCCTATTATTGC	.	144.0	19.0	108.0	0.0	.	91
PDCL	5082	ucsc.edu;bcgsc.ca	37	9	125582879	125582879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDCL	NM_005388	exon4	c.C391A	p.Q131K	CATCTTGGTCCTC	.	28.0	4.0	33.0	0.0	.	90
PDE1A	5136	ucsc.edu;bcgsc.ca	37	2	183053724	183053724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE1A	NM_001258312	exon12	c.G1249A	p.V417M	GGGCCACCATGGT	.	43.0	4.0	37.0	0.0	.	93
PDLIM3	27295	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186425735	186425735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDLIM3	NM_014476	exon7	c.C799G	p.R267G	CCGGACGGTCATC	.	16.0	16.0	40.0	0.0	.	92
PHF3	23469	ucsc.edu;bcgsc.ca	37	6	64390032	64390032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHF3	NM_015153	exon2	c.C376A	p.P126T	AGATCTCCAAGAA	.	41.0	4.0	72.0	1.0	.	229
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67262555	67262555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PITPNM1	NM_004910	exon17	c.T2624C	p.L875P	TGGCGCAGGATGA	.	23.0	4.0	38.0	0.0	.	227
PIWIL4	143689	ucsc.edu;bcgsc.ca	37	11	94331044	94331044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIWIL4	NM_152431	exon11	c.T1343C	p.I448T	GCCGGATTGTGCC	.	45.0	4.0	60.0	0.0	.	91
PIWIL4	143689	ucsc.edu;bcgsc.ca	37	11	94351131	94351131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIWIL4	NM_152431	exon17	c.A2026G	p.K676E	CTCAACAAATGGT	.	31.0	4.0	78.0	0.0	.	91
PKD1L2	114780	ucsc.edu;bcgsc.ca	37	16	81241133	81241133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKD1L2	NM_001076780	exon5	c.A868T	p.T290S	CTCCTGTACTAAT	.	44.0	4.0	59.0	0.0	.	92
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51824795	51824795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKHD1	NM_170724	exon36	c.A5781T	p.R1927S	GGACCATCTCCGG	.	122.0	13.0	60.0	0.0	.	603
PLA2G6	8398	ucsc.edu;bcgsc.ca	37	22	38508273	38508273	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLA2G6	NM_003560	exon17	c.G2316A	p.E772E	ACTGACCTCATCC	.	25.0	4.0	28.0	0.0	.	91
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8626827	8626827	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLCB1	NM_015192	exon5	c.A463A	p.S155S	GAAAAAGCGTAAG	.	121.0	16.0	137.0	0.0	.	297
PLD5	200150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	242451667	242451667	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLD5	NM_152666	exon4	c.T492A	p.C164X	TACCTGACATGCT	.	561.0	61.0	424.0	0.0	.	96
PLXNA1	5361	ucsc.edu;bcgsc.ca	37	3	126737196	126737196	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLXNA1	NM_032242	exon19	c.G3720T	p.L1240L	CAGCCTGCTGACG	.	53.0	4.0	63.0	0.0	.	93
PPARGC1B	133522	ucsc.edu;bcgsc.ca	37	5	149200062	149200062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPARGC1B	NM_133263	exon2	c.G145A	p.A49T	CTGGATGCCAGCG	.	25.0	4.0	27.0	0.0	.	186
PPP1R13B	23368	ucsc.edu;bcgsc.ca	37	14	104204199	104204199	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP1R13B	NM_015316	exon16	c.2865-2A>G	.	GCGTCCTGGAATA	.	16.0	4.0	36.0	0.0	.	227
PPP3CA	5530	ucsc.edu;bcgsc.ca	37	4	102030193	102030193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP3CA	NM_000944	exon3	c.T302C	p.L101P	TCAAAGAGCTTCA	.	39.0	4.0	45.0	0.0	.	227
PRDM10	56980	ucsc.edu;bcgsc.ca	37	11	129793150	129793150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRDM10	NM_020228	exon14	c.A2039G	p.Q680R	TTAAATTGCTTCC	.	35.0	4.0	39.0	0.0	.	91
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22294684	22294684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRL	NM_000948	exon2	c.T158A	p.L53Q	TGGGACAGGACGA	.	270.0	56.0	142.0	0.0	.	90
PROM1	8842	ucsc.edu;bcgsc.ca	37	4	16002203	16002203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PROM1	NM_006017	exon13	c.G1494T	p.M498I	AATGATCATCAAT	.	44.0	4.0	55.0	0.0	.	207
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120022233	120022233	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRR16	NM_016644	exon3	c.C675T	p.G225G	CCAAGGCCCTCCC	.	118.0	28.0	100.0	0.0	.	71
PTPN14	5784	broad.mit.edu;bcgsc.ca	37	1	214531354	214531354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN14	NM_005401	exon19	c.C3475A	p.Q1159K	TCCTCTGCTCCCT	.	144.0	7.0	103.0	0.0	.	290
PTPN6	5777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7064833	7064833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN6	NM_080548	exon7	c.A764G	p.K255R	TGCAGAAGCAGGA	.	55.0	7.0	59.0	0.0	.	703
RAB31	11031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9859227	9859227	+	Missense_Mutation	SNP	C	C	A	rs147665641	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB31	NM_006868	exon7	c.C493A	p.R165S	GCAGGCCGCCAGA	.	41.0	12.0	68.0	0.0	C|0.999;T|0.001	205
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4874647	4874647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RADIL	NM_018059	exon4	c.C1007T	p.T336I	ACCACGGTCCTGT	.	35.0	20.0	41.0	0.0	.	994
RBM47	54502	ucsc.edu;bcgsc.ca	37	4	40440519	40440519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM47	NM_001098634	exon4	c.T392C	p.L131P	TTGTTGAGCTCAC	.	44.0	5.0	59.0	0.0	.	25
RCBTB2	1102	ucsc.edu;bcgsc.ca	37	13	49073784	49073784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RCBTB2	NM_001268	exon13	c.A1357G	p.I453V	GGCTGATGCTGTC	.	38.0	4.0	82.0	0.0	.	418
REG1B	5968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79314699	79314699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REG1B	NM_006507	exon2	c.C40A	p.L14M	ACATCAGGGAGGA	.	106.0	30.0	148.0	0.0	.	91
RELT	84957	ucsc.edu;bcgsc.ca	37	11	73103403	73103403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RELT	NM_152222	exon6	c.T515C	p.F172S	CTGTCTTCTGCCT	.	45.0	4.0	66.0	0.0	.	228
REPS2	9185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17095520	17095520	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REPS2	NM_004726	exon13	c.C1506T	p.P502P	CCAGCCCAGTGTG	.	33.0	15.0	26.0	0.0	.	131
RFX3	5991	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	3346710	3346710	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RFX3	NM_134428	exon4	c.C172T	p.Q58X	CATACTGCACCTG	.	44.0	10.0	70.0	0.0	.	93
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	90023512	90023512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon4	c.C650A	p.S217X	AGGTCCGACTGGT	.	44.0	19.0	44.0	0.0	.	226
RHCG	51458	ucsc.edu;bcgsc.ca	37	15	90039658	90039658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon1	c.T118C	p.W40R	ACCACCAGTGGGC	.	31.0	4.0	32.0	0.0	.	226
RHOBTB2	23221	ucsc.edu;bcgsc.ca	37	8	22874843	22874843	+	Missense_Mutation	SNP	G	G	A	rs143264894		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHOBTB2	NM_001160036	exon12	c.G2111A	p.R704Q	GGGCACGGAAGGA	.	33.0	4.0	66.0	0.0	G|1.000;A|0.000	416
RIMS2	9699	ucsc.edu;bcgsc.ca	37	8	105001616	105001616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIMS2	NM_001100117	exon17	c.T3011C	p.V1004A	ATCGTGTCATGGA	.	34.0	4.0	29.0	0.0	.	279
RNF123	63891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49753579	49753579	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF123	NM_022064	exon34	c.G3384C	p.L1128L	GAACCTGTTTGAT	.	47.0	8.0	28.0	0.0	.	584
RNF168	165918	ucsc.edu;bcgsc.ca	37	3	196229935	196229935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF168	NM_152617	exon1	c.A110G	p.K37R	CACGGTTTACACA	.	43.0	5.0	78.0	0.0	.	90
RWDD1	51389	ucsc.edu;bcgsc.ca	37	6	116901493	116901493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RWDD1	NM_015952	exon2	c.G109A	p.V37M	ATTACTGTGACGT	.	31.0	4.0	65.0	0.0	.	92
RXFP1	59350	ucsc.edu;bcgsc.ca	37	4	159572966	159572966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXFP1	NM_001253727	exon18	c.C2114A	p.P705Q	TGAACCCAATTCT	.	30.0	4.0	71.0	0.0	.	91
RXRG	6258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165376062	165376062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXRG	NM_006917	exon9	c.G1231A	p.E411K	GCTGTTCCGGATA	.	74.0	7.0	34.0	0.0	.	186
S1PR5	53637	ucsc.edu;bcgsc.ca	37	19	10625491	10625491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	S1PR5	NM_030760	exon2	c.G197T	p.R66L	TGGAAGCGCGGGT	.	24.0	4.0	27.0	0.0	.	523
SDCCAG3	10807	ucsc.edu;bcgsc.ca	37	9	139298615	139298615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SDCCAG3	NM_001039707	exon9	c.A1100G	p.E367G	AGGGCTTCATTCT	.	44.0	4.0	66.0	0.0	.	90
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83590805	83590805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA3A	NM_006080	exon17	c.G2198T	p.R733L	TGCCGACGTTGTT	.	182.0	76.0	234.0	0.0	.	156
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74901762	74901762	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA4F	NM_004263	exon8	c.G960C	p.G320G	GCTTGGGGCAGGG	.	93.0	27.0	140.0	0.0	.	93
SERPINC1	462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173878764	173878764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SERPINC1	NM_000488	exon5	c.G1079A	p.G360D	CTGAAGCCGTCCT	.	40.0	7.0	34.0	0.0	.	227
SETX	23064	ucsc.edu;bcgsc.ca	37	9	135210076	135210076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SETX	NM_015046	exon7	c.A757T	p.M253L	AATCCATGGCTTG	.	39.0	4.0	72.0	0.0	.	93
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16989085	16989085	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SIN3B	NM_015260	exon19	c.3142delG	p.V1048fs	GTGGGCGTGGAGA	.	16.0	16.0	20.0	0.0	.	228
SLC22A6	9356	ucsc.edu;bcgsc.ca	37	11	62751010	62751010	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC22A6	NM_153276	exon3	c.G627T	p.L209L	CTCACTCAGTGTC	.	30.0	4.0	40.0	0.0	.	90
SLC7A5	8140	ucsc.edu;bcgsc.ca	37	16	87868106	87868106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC7A5	NM_003486	exon9	c.G1382T	p.G461V	GTGAAGCCGATGC	.	45.0	4.0	80.0	0.0	.	90
SMYD1	150572	ucsc.edu;bcgsc.ca	37	2	88410004	88410004	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMYD1	NM_198274	exon10	c.C1446T	p.S482S	GCCATCCCCAGCT	.	45.0	4.0	47.0	0.0	.	229
SND1	27044	ucsc.edu;bcgsc.ca	37	7	127344990	127344990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SND1	NM_014390	exon8	c.C938A	p.A313E	TGAGGGCGGCAGA	.	43.0	4.0	68.0	0.0	.	92
SPEF2	79925	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	35618118	35618118	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPEF2	NM_024867	exon1	c.C19T	p.Q7X	CTGTGCCAGTGGC	.	118.0	15.0	99.0	0.0	.	26
SPINK9	643394	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147718126	147718126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPINK9	NM_001040433	exon3	c.G173T	p.G58V	CTGATGGCAAAAC	.	469.0	131.0	370.0	2.0	.	22
SPTBN4	57731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41009905	41009905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPTBN4	NM_020971	exon12	c.G1531C	p.D511H	CAGCGTGACAGCG	.	63.0	40.0	65.0	1.0	.	94
SRBD1	55133	ucsc.edu;bcgsc.ca	37	2	45832562	45832562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SRBD1	NM_018079	exon2	c.A19G	p.R7G	TCGCTCTTCTTGG	.	44.0	4.0	47.0	0.0	.	90
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64678684	64678684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNE2	NM_182914	exon104	c.C18729A	p.F6243L	GCATTTCACCAAC	.	18.0	4.0	55.0	0.0	.	164
SYNPO2	171024	ucsc.edu;bcgsc.ca	37	4	119952907	119952907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNPO2	NM_001128934	exon4	c.T2977C	p.S993P	AAGTCATCAGTCA	.	36.0	4.0	75.0	0.0	.	92
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71175879	71175879	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TACR2	NM_001057	exon1	c.C201T	p.V67V	GTTGGTGACTGTG	.	82.0	27.0	50.0	0.0	.	522
TADA2B	93624	ucsc.edu;bcgsc.ca	37	4	7055982	7055982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TADA2B	NM_152293	exon2	c.A464G	p.D155G	CGCTGGACATCTC	.	30.0	4.0	50.0	0.0	.	68
TBL3	10607	ucsc.edu;bcgsc.ca	37	16	2027783	2027783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBL3	NM_006453	exon18	c.A1940G	p.Q647R	CCAGGCAAGAGGA	.	50.0	4.0	66.0	0.0	.	90
TBPL1	9519	ucsc.edu;bcgsc.ca	37	6	134308131	134308131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBPL1	NM_004865	exon7	c.G514A	p.E172K	GCTGTGGAACAGA	.	37.0	4.0	69.0	0.0	.	90
TCP1	6950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160206479	160206479	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCP1	NM_030752	exon5	c.C427G	p.L143V	TTCCCAGTTCATC	.	49.0	15.0	73.0	0.0	.	153
TCTN2	79867	ucsc.edu;bcgsc.ca	37	12	124189231	124189231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCTN2	NM_024809	exon15	c.A1765G	p.T589A	GTAGAGACAAGGT	.	35.0	4.0	66.0	0.0	.	91
TDRD7	23424	ucsc.edu;bcgsc.ca	37	9	100232863	100232863	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TDRD7	NM_014290	exon9	c.T1653C	p.F551F	TGGTTTTAGTGAA	.	39.0	4.0	76.0	0.0	.	93
TFAP2C	7022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55212882	55212882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TFAP2C	NM_003222	exon7	c.G1166A	p.C389Y	AGAACTGCTTGTC	.	63.0	7.0	72.0	0.0	.	514
TIRAP	114609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	126162958	126162958	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TIRAP	NM_148910	exon5	c.A654G	p.L218L	TAAGCTACTACAG	.	20.0	5.0	25.0	0.0	.	523
TJP2	9414	ucsc.edu;bcgsc.ca	37	9	71849423	71849423	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TJP2	NM_001170416	exon12	c.A1833G	p.K611K	CCCTAAAGGTGAA	.	47.0	4.0	75.0	0.0	.	115
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19049310	19049310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMC7	NM_024847	exon8	c.G1120T	p.G374W	GTTTTAGGGGCAT	.	161.0	85.0	177.0	0.0	.	93
TMEM120A	83862	ucsc.edu;bcgsc.ca	37	7	75621559	75621559	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	CCTCTGCTGGGAG	.	35.0	4.0	31.0	0.0	.	.
TMEM132B	114795	ucsc.edu;bcgsc.ca	37	12	126135429	126135429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM132B	NM_052907	exon7	c.A1829G	p.E610G	TGGAGGAGCCGAA	.	34.0	4.0	54.0	1.0	.	185
TMEM181	57583	ucsc.edu;bcgsc.ca	37	6	159005044	159005044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM181	NM_020823	exon4	c.T638C	p.L213P	TATGGCTGACATG	.	32.0	4.0	80.0	0.0	.	70
TMEM200A	114801	ucsc.edu;bcgsc.ca	37	6	130762511	130762511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM200A	NM_001258277	exon3	c.T944C	p.L315P	ACAACCTCAAAAG	.	42.0	4.0	82.0	1.0	.	23
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57088308	57088308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_017799	exon11	c.C1286G	p.S429C	TCACCTCTATGCC	.	25.0	5.0	48.0	0.0	.	.
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111764780	111764780	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMPRSS7	NM_001042575	exon4	c.G342A	p.V114V	CTCTGTGGTACTA	.	322.0	117.0	372.0	0.0	.	70
TNFRSF4	7293	ucsc.edu;bcgsc.ca	37	1	1146981	1146981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNFRSF4	NM_003327	exon7	c.T788C	p.I263T	TCTTGGATGGGGG	.	41.0	4.0	50.0	1.0	.	227
TNKS1BP1	85456	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	57080662	57080662	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1500A	p.I500I	TTCAGTGATGGGG	.	70.0	18.0	18.0	0.0	.	91
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080520	57080520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1642G	p.P548A	TGCTTGGATCATC	.	137.0	25.0	48.0	1.0	.	91
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080675	57080675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1487T	p.P496L	GAGGGAGGCGGGG	.	65.0	15.0	17.0	0.0	.	91
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080609	57080609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1553T	p.S518F	CTGCTGGAAACGG	.	85.0	21.0	28.0	0.0	.	91
TRIM44	54765	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	35684743	35684743	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIM44	NM_017583	exon1	c.G84T	p.G28G	TCCGGGGGCCGAG	.	25.0	9.0	17.0	0.0	.	227
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3186326	3186329	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRNT1	NM_182916	exon5	c.540_543del	p.180_181del	TAAGAAAGTTAGA	.	155.0	23.0	204.0	0.0	.	90
TRPV2	51393	ucsc.edu;bcgsc.ca	37	17	16335396	16335396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPV2	NM_016113	exon12	c.A1771G	p.R591G	CAGTACAGGGGTA	.	48.0	4.0	66.0	0.0	.	91
TRRAP	8295	ucsc.edu;bcgsc.ca	37	7	98562268	98562268	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRRAP	NM_001244580	exon47	c.C6825A	p.L2275L	GATCCTCAAGTCT	.	30.0	4.0	41.0	0.0	.	923
TSC2	7249	ucsc.edu;bcgsc.ca	37	16	2136204	2136204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSC2	NM_000548	exon37	c.A4673G	p.E1558G	ACAGCGAGCTCGC	.	37.0	4.0	33.0	0.0	.	1908
TTC28	23331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28504014	28504014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145418	exon7	c.C1819T	p.R607W	CTCCCCGAGAGCA	.	35.0	6.0	51.0	0.0	.	.
TTC3	7267	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	38532006	38532006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC3	NM_001001894	exon29	c.C2998T	p.R1000C	GACAGCCGCTGTA	.	26.0	6.0	43.0	0.0	.	590
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38538901	38538901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC3	NM_001001894	exon33	c.A4385G	p.Q1462R	ACGTGCAGATGGT	.	67.0	21.0	108.0	0.0	.	590
TTLL3	26140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9870684	9870685	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTLL3	NM_001025930	exon10	c.1588_1589del	p.530_530del	CACCTGGAGAACT	.	36.0	15.0	50.0	0.0	.	585
TTYH3	80727	ucsc.edu;bcgsc.ca	37	7	2695773	2695773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTYH3	NM_025250	exon10	c.C1068A	p.N356K	GGTGAACCTGCAG	.	65.0	7.0	66.0	0.0	.	90
TUBB4B	10383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140137668	140137668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_006088	exon4	c.T998C	p.V333A	TTAATGTCCAAAA	.	76.0	24.0	143.0	1.0	.	.
TUBGCP2	10844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135099037	135099037	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TUBGCP2	NM_001256617	exon13	c.G1902T	p.T634T	CAGCTCCGTGGGG	.	39.0	16.0	49.0	0.0	.	90
ULK2	9706	ucsc.edu;bcgsc.ca	37	17	19684355	19684355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ULK2	NM_001142610	exon24	c.T2702C	p.L901P	TTGGCAAGATGCA	.	45.0	4.0	82.0	1.0	.	334
UNC79	57578	ucsc.edu;bcgsc.ca	37	14	94046510	94046510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_020818	exon19	c.G1918T	p.D640Y	CAAGATGATGGAA	.	46.0	4.0	68.0	1.0	.	.
USP14	9097	ucsc.edu;bcgsc.ca	37	18	210405	210405	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP14	NM_005151	exon15	c.T1245C	p.C415C	TAATTGTGGATAC	.	48.0	4.0	100.0	0.0	.	659
USP15	9958	ucsc.edu;bcgsc.ca	37	12	62783237	62783237	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP15	NM_001252078	exon12	c.A1500G	p.G500G	AATTGGAAACATA	.	58.0	6.0	55.0	0.0	.	1084
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17197365	17197365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP25	NM_013396	exon12	c.A1289G	p.Q430R	TATTACAACAAAG	.	157.0	36.0	275.0	0.0	.	663
USP48	84196	ucsc.edu;bcgsc.ca	37	1	22050539	22050539	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP48	NM_032236	exon12	c.A1500G	p.E500E	TGTTGATTCATCC	.	46.0	4.0	50.0	0.0	.	659
USP5	8078	ucsc.edu;bcgsc.ca	37	12	6970233	6970233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP5	NM_003481	exon12	c.G1461A	p.M487I	CATCATGCAGCTG	.	47.0	4.0	49.0	0.0	.	659
VAV1	7409	ucsc.edu;bcgsc.ca	37	19	6825416	6825416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	VAV1,NS,malignant_melanoma,-1	VAV1	NM_005428	exon8	c.A826G	p.R276G	AAGGAGAGGTGAG	.	35.0	4.0	34.0	0.0	.	1276
WBP2	23558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73851333	73851333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WBP2	NM_012478	exon1	c.A46G	p.N16D	TGTTATTGACGAT	.	105.0	98.0	85.0	0.0	.	90
WDR52	55779	ucsc.edu;bcgsc.ca	37	3	113152468	113152468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR52	NM_001164496	exon2	c.T44C	p.V15A	GATGTAACTGATT	.	40.0	4.0	63.0	0.0	.	90
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1957733	1957733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WHSC1	NM_133335	exon15	c.A2699G	p.H900R	TTTGCCATCCCAA	.	89.0	14.0	110.0	0.0	.	664
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168097234	168097234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XIRP2	NM_001199143	exon8	c.G1129T	p.V377F	CAATATGTTCAAG	.	164.0	71.0	184.0	0.0	.	104
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	742994	742994	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon8	c.A984G	p.R328R	ATCATGTCTTAAT	.	132.0	69.0	184.0	0.0	.	547
YES1	7525	ucsc.edu;bcgsc.ca	37	18	747938	747938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon4	c.A452G	p.D151G	ATGGAATCTGCAG	.	37.0	4.0	58.0	0.0	.	547
YOD1	55432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207224106	207224106	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YOD1	NM_018566	exon1	c.C270T	p.L90L	TCCGACGAGGATT	.	123.0	11.0	68.0	0.0	.	522
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100391477	100391477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZAN	.	.	.	.	CAGAGCTGTATGA	.	25.0	4.0	39.0	0.0	.	142
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125674263	125674263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBTB6	NM_006626	exon2	c.A89G	p.N30S	AATAAATTCTGCT	.	65.0	56.0	112.0	0.0	.	90
ZCCHC6	79670	ucsc.edu;bcgsc.ca	37	9	88932158	88932158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZCCHC6	NM_024617	exon17	c.G3250T	p.A1084S	CTCTTGCTAATTC	.	37.0	4.0	37.0	0.0	.	92
ZFP106	64397	ucsc.edu;bcgsc.ca	37	15	42720252	42720252	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFP106	NM_022473	exon12	c.A4893T	p.G1631G	TGCCAGTCCCGCA	.	43.0	4.0	48.0	0.0	.	515
ZFYVE28	57732	ucsc.edu;bcgsc.ca	37	4	2275874	2275874	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFYVE28	NM_020972	exon9	c.T2121C	p.A707A	TGGGGCAGCATGC	.	41.0	5.0	53.0	0.0	.	93
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161948	43161948	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF131	NM_003432	exon6	c.T867C	p.T289T	AAGAACTGGGAAA	.	145.0	78.0	169.0	0.0	.	90
ZNF534	147658	ucsc.edu;bcgsc.ca	37	19	52941840	52941840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF534	NM_001143939	exon4	c.A1166G	p.H389R	AAGTTCATACTGG	.	41.0	4.0	58.0	0.0	.	68
ZNF577	84765	ucsc.edu;bcgsc.ca	37	19	52375795	52375795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF577	NM_032679	exon7	c.T1448A	p.V483E	TCTGATACAATAT	.	38.0	5.0	43.0	0.0	.	91
ZNF646	9726	ucsc.edu;bcgsc.ca	37	16	31091072	31091072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF646	NM_014699	exon2	c.G3427A	p.G1143R	GAGGAGGGGCCGG	.	34.0	4.0	38.0	0.0	.	153
ZNF671	79891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58232430	58232430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF671	NM_024833	exon4	c.G1024A	p.E342K	TGCACTCGTATGG	.	34.0	6.0	48.0	0.0	.	91
ZNF69	7620	ucsc.edu;bcgsc.ca	37	19	11998759	11998759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF69	NM_021915	exon1	c.G21T	p.R7S	TCACAGGAGGTGT	.	37.0	4.0	40.0	0.0	.	91
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146859553	146859553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF827	NM_178835	exon1	c.A7T	p.R3W	TCCTCCTGGGCAT	.	96.0	68.0	160.0	0.0	.	22
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	57767023	57767023	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF831	NM_178457	exon1	c.C949A	p.R317R	CTGCAGCGGCAGC	.	16.0	10.0	19.0	0.0	.	126
ZSWIM8	23053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75548453	75548453	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_015037	exon2	c.G234A	p.E78E	GGTGGAGCTGTCA	.	44.0	6.0	58.0	0.0	.	.
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43274045	43274046	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	p.K136V	ATCACCTTCTCAG	.	51.0	47.0	43.0	0.0	.	.
