Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	ucsc.edu;bcgsc.ca	37	12	9225057	9225057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	A2M	NM_000014	exon31	c.C4001A	p.P1334Q	TTTTCTGGGAGAA	.	45.0	4.0	49.0	0.0	.	515
ACOX3	8310	ucsc.edu;bcgsc.ca	37	4	8372711	8372711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ACOX3	NM_003501	exon17	c.A1907G	p.D636G	ACTGCATCGTCTT	.	33.0	4.0	25.0	0.0	.	90
ACTR8	93973	ucsc.edu;bcgsc.ca	37	3	53905467	53905467	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ACTR8	NM_022899	exon11	c.G1359A	p.G453G	AAGATCCCCTTCA	.	42.0	4.0	38.0	1.0	.	91
ADAM32	203102	ucsc.edu;bcgsc.ca	37	8	39022715	39022715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ADAM32	NM_145004	exon9	c.T833C	p.I278T	TACTAATGTAAGA	.	34.0	4.0	32.0	0.0	.	227
ADCY5	111	ucsc.edu;bcgsc.ca	37	3	123018993	123018993	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ADCY5	NM_183357	exon15	c.C2874A	p.A958A	CAGGTCGGCGTTG	.	42.0	4.0	34.0	0.0	.	94
AKR1D1	6718	ucsc.edu;bcgsc.ca	37	7	137773383	137773383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	AKR1D1	NM_001190907	exon2	c.G130A	p.A44T	AAGGTTGCTATTG	.	47.0	4.0	34.0	0.0	.	91
ALDOB	229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104192169	104192169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ALDOB	NM_000035	exon3	c.C192A	p.F64L	CACAGAGAAGAGG	.	134.0	33.0	126.0	0.0	.	226
AMZ1	155185	ucsc.edu;bcgsc.ca	37	7	2748347	2748347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	AMZ1	NM_133463	exon4	c.C598A	p.H200N	CCAGGGCACGGTG	.	27.0	4.0	22.0	0.0	.	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	21235442	21235442	+	Nonsense_Mutation	SNP	G	G	T	rs200708197	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	APOB	NM_000384	exon26	c.C4298A	p.S1433X	ATATTCGAATCTA	.	73.0	20.0	73.0	0.0	G|0.999;A|0.001	175
ARHGAP31	57514	ucsc.edu;bcgsc.ca	37	3	119133643	119133643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ARHGAP31	NM_020754	exon12	c.A2867G	p.D956G	CTCTAGATAGCAA	.	25.0	4.0	22.0	0.0	.	92
ARHGEF10L	55160	ucsc.edu;bcgsc.ca	37	1	17981129	17981129	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ARHGEF10L	NM_018125	exon23	c.2395-2A>G	.	CTCTGCAGCTTGG	.	45.0	5.0	52.0	0.0	.	292
ASZ1	136991	ucsc.edu;bcgsc.ca	37	7	117060227	117060227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ASZ1	NM_130768	exon4	c.G430T	p.V144F	AAGCAACATTTGG	.	18.0	4.0	23.0	0.0	.	515
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36049328	36049328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ATP4A	NM_000704	exon10	c.T1436C	p.M479T	TAGCCCATGGCGT	.	43.0	5.0	43.0	0.0	.	91
ATP8B3	148229	broad.mit.edu;bcgsc.ca	37	19	1807173	1807173	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_138813	exon6	c.C609T	p.D203D	CATGTCGTCCACC	.	58.0	7.0	46.0	0.0	.	.
BCL6B	255877	ucsc.edu;bcgsc.ca	37	17	6927950	6927950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BCL6B	NM_181844	exon4	c.G632T	p.S211I	CAGGGAGCCTGGT	.	29.0	4.0	39.0	0.0	.	227
BEST1	7439	hgsc.bcm.edu;broad.mit.edu	37	11	61723374	61723376	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BEST1	NM_004183	exon4	c.432_434del	p.144_145del	CGTCAGCACCGCA	.	35.0	13.0	25.0	0.0	.	90
BRCC3	79184	broad.mit.edu;bcgsc.ca	37	X	154348355	154348355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BRCC3	NM_024332	exon11	c.A881G	p.N294S	AGCAAAACCAACA	.	86.0	6.0	100.0	0.0	.	706
BTBD9	114781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38256182	38256182	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BTBD9	NM_052893	exon9	c.C1320T	p.V440V	CCGACTGACTCCT	.	59.0	13.0	67.0	0.0	.	226
C11orf96	387763	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	43964686	43964686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	C11orf96	NM_001145033	exon1	c.A232G	p.K78E	GAGGAGAAGGCCA	.	31.0	10.0	39.0	0.0	.	46
C4orf51	646603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146650320	146650320	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001080531	exon4	c.367-1G>T	.	TTTATAGGCACAT	.	201.0	21.0	184.0	1.0	.	.
C4orf51	646603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146650321	146650321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001080531	exon4	c.G367T	p.A123S	TTATAGGCACATC	.	199.0	20.0	184.0	0.0	.	.
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37227754	37227754	+	Silent	SNP	T	T	C	rs186540080	by1000genomes	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	C5orf42	NM_023073	exon10	c.A1287G	p.L429L	TGGAGATAGGCTA	.	136.0	23.0	110.0	0.0	T|0.999;C|0.000	94
CAV2	858	ucsc.edu;bcgsc.ca	37	7	116140371	116140371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CAV2	NM_001233	exon2	c.T208C	p.W70R	AAAGTGTGGATCT	.	42.0	4.0	61.0	0.0	.	90
CCDC136	64753	ucsc.edu;bcgsc.ca	37	7	128441554	128441554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CCDC136	NM_022742	exon4	c.G661T	p.G221W	TACTCTGGGTTAC	.	21.0	4.0	21.0	0.0	.	24
CCDC65	85478	ucsc.edu;bcgsc.ca	37	12	49298806	49298806	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CCDC65	NM_033124	exon2	c.G210T	p.R70R	CCTTCGGGAAGTC	.	40.0	4.0	43.0	0.0	.	92
CCDC80	151887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112358316	112358316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CCDC80	NM_199511	exon2	c.C437A	p.A146E	TTCCCTGCAAAGC	.	41.0	6.0	35.0	0.0	.	92
CD93	22918	ucsc.edu;bcgsc.ca	37	20	23065836	23065836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CD93	NM_012072	exon1	c.C994A	p.Q332K	ACCCTTGGGGGCA	.	42.0	5.0	36.0	0.0	.	153
CHAT	1103	ucsc.edu;bcgsc.ca	37	10	50863450	50863450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CHAT	NM_020549	exon13	c.C1795T	p.L599F	CTTCTGCTCCTGA	.	50.0	4.0	35.0	0.0	.	514
CHD9	80205	ucsc.edu;bcgsc.ca	37	16	53357978	53357978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CHD9	NM_025134	exon39	c.T7817C	p.V2606A	GTCCCGTTGTGAG	.	41.0	4.0	39.0	0.0	.	272
CHMP7	91782	ucsc.edu;bcgsc.ca	37	8	23114093	23114093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CHMP7	NM_152272	exon5	c.C778A	p.Q260K	TTATCCCAGGAAG	.	42.0	4.0	39.0	1.0	.	90
CKS1B	1163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	154947279	154947279	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CKS1B	NM_001826	exon1	c.C58T	p.R20X	GAGTATCGGTTAG	.	185.0	53.0	133.0	0.0	.	251
CLCN2	1181	ucsc.edu;bcgsc.ca	37	3	184069898	184069898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CLCN2	NM_004366	exon22	c.A2318G	p.E773G	TCCCACTCCAGAA	.	31.0	4.0	25.0	0.0	.	90
CLDN17	26285	ucsc.edu;bcgsc.ca	37	21	31538684	31538684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CLDN17	NM_012131	exon1	c.G252T	p.M84I	CACACACATGAGG	.	26.0	4.0	25.0	0.0	.	92
CMTM2	146225	ucsc.edu;bcgsc.ca	37	16	66613724	66613724	+	Silent	SNP	C	C	A	rs111592429	byfrequency;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CMTM2	NM_001199317	exon1	c.C214A	p.R72R	CGCTACCGGTGGG	.	67.0	6.0	53.0	0.0	C|0.994;T|0.006	91
CNPPD1	27013	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220037368	220037368	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CNPPD1	NM_015680	exon8	c.A1173G	p.Q391Q	GGAACATTGCTGA	.	37.0	12.0	42.0	0.0	.	90
COL16A1	1307	ucsc.edu;bcgsc.ca	37	1	32120418	32120418	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	COL16A1	NM_001856	exon68	c.A4332G	p.R1444R	CTCTTGTCTGATG	.	45.0	4.0	45.0	0.0	.	98
COPS4	51138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83971134	83971134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	COPS4	NM_016129	exon4	c.A407G	p.Q136R	CAGGACAAAAGTA	.	36.0	8.0	37.0	0.0	.	226
CPB2	1361	ucsc.edu;bcgsc.ca	37	13	46652945	46652945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CPB2	NM_001872	exon5	c.A476G	p.Y159C	AAAACATAGAGTG	.	30.0	4.0	37.0	0.0	.	92
CPNE3	8895	ucsc.edu;bcgsc.ca	37	8	87563426	87563426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CPNE3	NM_003909	exon14	c.C1084A	p.P362T	GAATTTCCAATGA	.	44.0	4.0	31.0	0.0	.	117
CPT1A	1374	ucsc.edu;bcgsc.ca	37	11	68527778	68527778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CPT1A	NM_001876	exon17	c.C2057T	p.T686I	TGGCTTGTTGATA	.	46.0	4.0	47.0	0.0	.	149
CYBASC3	220002	ucsc.edu;bcgsc.ca	37	11	61120553	61120553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CYBASC3	NM_001161454	exon6	c.T503C	p.L168P	TTTAGGAGGCTGC	.	48.0	4.0	41.0	0.0	.	90
CYFIP1	23191	ucsc.edu;bcgsc.ca	37	15	22956491	22956491	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CYFIP1	NM_014608	exon16	c.C1728A	p.S576S	TGGTTCCAAGAAA	.	47.0	4.0	39.0	0.0	.	99
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	39376177	39376177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DAB2	NM_001343	exon13	c.C2169A	p.S723S	TGGCAGGGAAACT	.	77.0	34.0	66.0	0.0	.	227
DAK	26007	ucsc.edu;bcgsc.ca	37	11	61113369	61113369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DAK	NM_015533	exon17	c.G1526T	p.W509L	AAGCCTGGAAGAG	.	37.0	4.0	39.0	0.0	.	115
DCHS1	8642	broad.mit.edu;mdanderson.org	37	11	6654287	6654287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DCHS1	NM_003737	exon6	c.G2456T	p.G819V	AAGCGACCTAGGG	.	24.0	6.0	18.0	0.0	.	73
DDC	1644	ucsc.edu;bcgsc.ca	37	7	50607706	50607706	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DDC	NM_001082971	exon3	c.C222A	p.P74P	GAAGTAGGGGCTG	.	41.0	4.0	45.0	0.0	.	92
DEPDC5	9681	ucsc.edu;bcgsc.ca	37	22	32211144	32211144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DEPDC5	NM_001242897	exon21	c.C1612A	p.P538T	CCACACCCCCACC	.	48.0	5.0	48.0	0.0	.	519
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11593141	11593141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DNAH9	NM_001372	exon20	c.G4002T	p.L1334F	GGAGTTGGAGTGC	.	47.0	4.0	46.0	0.0	.	168
DOCK10	55619	ucsc.edu;bcgsc.ca	37	2	225634958	225634958	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DOCK10	NM_014689	exon55	c.C6414A	p.L2138L	TTCGCTGAGCATG	.	46.0	4.0	34.0	0.0	.	92
DPP3	10072	ucsc.edu;bcgsc.ca	37	11	66262718	66262718	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DPP3	NM_130443	exon13	c.C1431A	p.I477I	AGTGATCAACCCA	.	25.0	4.0	33.0	0.0	.	46
DPP6	1804	ucsc.edu;bcgsc.ca	37	7	154172081	154172081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DPP6	NM_130797	exon3	c.A416G	p.E139G	TCAGTGAAGACTT	.	38.0	4.0	37.0	0.0	.	652
EGR2	1959	ucsc.edu;bcgsc.ca	37	10	64575691	64575691	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EGR2	NM_000399	exon1	c.C99T	p.A33A	CGACGTGGCGGCG	.	47.0	4.0	32.0	0.0	.	92
EIF4G2	1982	ucsc.edu;bcgsc.ca	37	11	10828411	10828411	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EIF4G2	NM_001042559	exon3	c.A63G	p.G21G	CCTACTTCCTCCT	.	45.0	4.0	39.0	0.0	.	91
ELFN1	392617	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1784476	1784476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001128636	exon2	c.C244T	p.R82C	CTCAGCCGCTTTG	.	55.0	9.0	65.0	0.0	.	.
EML5	161436	broad.mit.edu;bcgsc.ca	37	14	89124556	89124556	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EML5	NM_183387	exon26	c.C3852A	p.S1284S	AATGTCGGATTCT	.	125.0	7.0	96.0	1.0	.	93
ETS2	2114	ucsc.edu;bcgsc.ca	37	21	40186314	40186314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ETS2	NM_001256295	exon5	c.A722G	p.K241R	TTCCAAAGAGTAA	.	43.0	4.0	32.0	0.0	.	849
EXOC4	60412	ucsc.edu;bcgsc.ca	37	7	133689750	133689750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EXOC4	NM_021807	exon16	c.C2434T	p.P812S	TATGACCCCCTGG	.	41.0	4.0	43.0	0.0	.	159
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65300537	65300537	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EYS	NM_001142800	exon26	c.T5223C	p.D1741D	AGAACTATCACTT	.	125.0	21.0	128.0	0.0	.	660
FAM129B	64855	ucsc.edu;bcgsc.ca	37	9	130279192	130279192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FAM129B	NM_022833	exon8	c.G917A	p.R306Q	TCAGTTCGGATGA	.	37.0	4.0	36.0	0.0	.	68
FAM171A1	221061	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15255747	15255747	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FAM171A1	NM_001010924	exon8	c.C1840T	p.L614L	CCTGTAGTCTTTC	.	68.0	13.0	78.0	0.0	.	138
FAM216B	144809	ucsc.edu;bcgsc.ca	37	13	43360911	43360911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_182508	exon3	c.G112A	p.G38R	AACCAAGGGCAAC	.	38.0	4.0	33.0	0.0	.	.
FAM73B	84895	ucsc.edu;bcgsc.ca	37	9	131832221	131832221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FAM73B	NM_032809	exon15	c.G1552T	p.A518S	CAGCTTGCTGAAG	.	48.0	4.0	32.0	0.0	.	91
FBXO34	55030	ucsc.edu;bcgsc.ca	37	14	55819116	55819116	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FBXO34	NM_017943	exon2	c.C2008A	p.R670R	TGCCACCGGTCTC	.	45.0	4.0	30.0	0.0	.	228
FLRT3	23767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	14306475	14306475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FLRT3	NM_013281	exon2	c.T1678A	p.S560T	TCCTTGAGAAGAG	.	154.0	31.0	146.0	0.0	.	91
FNBP4	23360	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47745708	47745708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FNBP4	NM_015308	exon14	c.C2336T	p.T779I	GAGATGGTGGAAT	.	52.0	10.0	54.0	0.0	.	91
FNIP2	57600	ucsc.edu;bcgsc.ca	37	4	159791478	159791478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FNIP2	NM_020840	exon14	c.A2806G	p.S936G	AGCATCAGCACCC	.	38.0	4.0	35.0	0.0	.	68
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5645021	5645021	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FSCN1	NM_003088	exon5	c.C1398T	p.G466G	GGTGGGCGGGCGC	.	50.0	12.0	55.0	0.0	.	91
GALC	2581	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	88416215	88416215	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GALC	NM_000153	exon12	c.C1312G	p.L438V	TAAAAAGAAATCT	.	58.0	11.0	65.0	1.0	.	90
GANAB	23193	ucsc.edu;bcgsc.ca	37	11	62394348	62394348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GANAB	NM_198335	exon21	c.C2447T	p.P816L	GTTACAGGCAGGT	.	35.0	4.0	56.0	1.0	.	94
GIT2	9815	broad.mit.edu;bcgsc.ca	37	12	110390905	110390905	+	Silent	SNP	G	G	T	rs143551429	byfrequency;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GIT2	NM_001135213	exon14	c.C1240A	p.R414R	TCTGCCGGTTTGT	.	171.0	7.0	154.0	2.0	G|0.999;A|0.001	226
GP2	2813	ucsc.edu;bcgsc.ca	37	16	20328667	20328667	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GP2	NM_001007240	exon9	c.C1293T	p.H431H	CTCCACGTGGATG	.	41.0	4.0	41.0	0.0	.	94
GPRIN1	114787	ucsc.edu;bcgsc.ca	37	5	176025338	176025338	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GPRIN1	NM_052899	exon2	c.T1498C	p.L500L	TCCCCAAGGACCT	.	43.0	4.0	37.0	0.0	.	92
GPS1	2873	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80011842	80011842	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GPS1	NM_212492	exon3	c.G345A	p.L115L	GGCCCTGAAGATG	.	34.0	8.0	16.0	0.0	.	226
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145246178	145246178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GRXCR2	NM_001080516	exon2	c.G450C	p.E150D	AGCCTCCTCTTCC	.	131.0	30.0	91.0	0.0	.	22
GUK1	2987	ucsc.edu;bcgsc.ca	37	1	228336111	228336111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GUK1	NM_001159390	exon7	c.A578G	p.D193G	TTAACGACAGCCT	.	36.0	4.0	28.0	0.0	.	115
HAUS3	79441	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2242302	2242302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HAUS3	NM_024511	exon2	c.A372C	p.Q124H	CATCAATTGACAT	.	124.0	26.0	97.0	1.0	.	138
HELB	92797	ucsc.edu;bcgsc.ca	37	12	66725072	66725072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HELB	NM_033647	exon12	c.A2809G	p.M937V	GCCATTATGAAAA	.	34.0	4.0	41.0	1.0	.	515
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62198260	62198260	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001037335	exon7	c.C2451A	p.T817T	GGGCCAGGTGTTG	.	23.0	4.0	34.0	0.0	.	.
HEPHL1	341208	ucsc.edu;bcgsc.ca	37	11	93778947	93778947	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HEPHL1	NM_001098672	exon2	c.A279G	p.K93K	CCCCAAACCTCCC	.	47.0	4.0	59.0	1.0	.	71
HERC4	26091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69726472	69726472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HERC4	NM_022079	exon16	c.A1894G	p.I632V	AGTTGATATAATC	.	100.0	17.0	120.0	0.0	.	659
HESX1	8820	broad.mit.edu;ucsc.edu	37	3	57233897	57233897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HESX1	NM_003865	exon1	c.C50A	p.S17X	CAAGTTGAGGGTT	.	71.0	9.0	71.0	0.0	.	227
HFE2	148738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145414811	145414811	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HFE2	NM_213653	exon2	c.C30T	p.P10P	TAGTCCCAGGTCC	.	80.0	22.0	60.0	0.0	.	91
HMCN1	83872	broad.mit.edu;bcgsc.ca	37	1	186088390	186088390	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HMCN1	NM_031935	exon78	c.G11916T	p.A3972A	GAATGCGGCTGGC	.	100.0	8.0	72.0	0.0	.	113
HSD17B14	51171	ucsc.edu;bcgsc.ca	37	19	49316448	49316448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HSD17B14	NM_016246	exon9	c.C797A	p.P266H	ATATCGGGGGCGT	.	28.0	4.0	51.0	0.0	.	90
HSF2	3298	ucsc.edu;bcgsc.ca	37	6	122737443	122737443	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HSF2	NM_004506	exon5	c.531+2T>C	.	GAAAGGTAAGAAG	.	43.0	4.0	38.0	1.0	.	90
HTRA3	94031	ucsc.edu;bcgsc.ca	37	4	8293156	8293156	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HTRA3	NM_053044	exon4	c.G768T	p.V256V	GTTTGTGGTGGCC	.	51.0	6.0	76.0	0.0	.	91
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158984635	158984635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IFI16	NM_001206567	exon2	c.G165C	p.K55N	AGAAAAGTTCCGA	.	270.0	63.0	258.0	0.0	.	91
IL17RD	54756	ucsc.edu;bcgsc.ca	37	3	57148813	57148813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IL17RD	NM_017563	exon3	c.C217A	p.H73N	TCACATGCTTCCC	.	31.0	5.0	31.0	0.0	.	500
IMPACT	55364	ucsc.edu;bcgsc.ca	37	18	22023067	22023067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IMPACT	NM_018439	exon7	c.G545T	p.R182L	CAGACCGAAGAAG	.	40.0	4.0	54.0	0.0	.	90
IPO9	55705	ucsc.edu;bcgsc.ca	37	1	201832722	201832722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IPO9	NM_018085	exon14	c.A1615G	p.R539G	GCAGTGAGAGCCA	.	42.0	5.0	50.0	0.0	.	228
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	3600204	3600204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IRX1	NM_024337	exon2	c.C1142A	p.A381E	TCCTCGCACAGGG	.	98.0	27.0	74.0	0.0	.	228
ITPR3	3710	ucsc.edu;bcgsc.ca	37	6	33631612	33631612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ITPR3	NM_002224	exon11	c.A1103G	p.E368G	TCTTTGAGCTGGA	.	31.0	4.0	45.0	0.0	.	1085
KALRN	8997	ucsc.edu;bcgsc.ca	37	3	124418823	124418823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KALRN	NM_001024660	exon56	c.C7939A	p.P2647T	AGTAACCCCTGGG	.	45.0	6.0	44.0	0.0	.	738
KCNA10	3744	broad.mit.edu;bcgsc.ca	37	1	111060014	111060014	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KCNA10	NM_005549	exon1	c.C1396A	p.R466R	TCTCCCGGTGGTA	.	187.0	8.0	157.0	1.0	.	156
KDM2A	22992	ucsc.edu;bcgsc.ca	37	11	66975111	66975111	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KDM2A	NM_012308	exon6	c.C438A	p.L146L	CAGCCTCGAGTTT	.	41.0	4.0	51.0	0.0	.	661
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202710671	202710671	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KDM5B	NM_006618	exon19	c.G2769A	p.V923V	TTGCTGCACCTCT	.	46.0	10.0	44.0	0.0	.	273
KIAA0368	23392	ucsc.edu;bcgsc.ca	37	9	114195630	114195630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KIAA0368	NM_001080398	exon9	c.T1265C	p.F422S	TCTATGAATTTCA	.	42.0	4.0	29.0	0.0	.	68
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32135645	32135645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	C12orf35,NS,carcinoma,-1	.	NM_018169	exon4	c.G1756A	p.A586T	CTTCTCGCTTTGC	.	51.0	9.0	51.0	0.0	.	.
KIFC1	3833	ucsc.edu;bcgsc.ca	37	6	33371612	33371612	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KIFC1	NM_002263	exon6	c.T462C	p.R154R	GTGCCGTGAGAGG	.	43.0	4.0	42.0	0.0	.	90
KLC4	89953	ucsc.edu;bcgsc.ca	37	6	43033408	43033408	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KLC4	NM_201523	exon4	c.T594C	p.P198P	CTTTCCTAATGAG	.	41.0	4.0	31.0	0.0	.	94
KLK1	3816	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51323553	51323553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	KLK1	NM_002257	exon3	c.G353C	p.S118T	TCGTGGCTGTAGT	.	121.0	17.0	108.0	1.0	.	226
LCN6	158062	ucsc.edu;bcgsc.ca	37	9	139641977	139641977	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LCN6	NM_198946	exon2	c.G129T	p.R43R	CTTTTCCCGGGAG	.	39.0	4.0	33.0	0.0	.	90
LHX9	56956	ucsc.edu;bcgsc.ca	37	1	197890497	197890497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LHX9	NM_020204	exon3	c.G441T	p.M147I	GGTCATGCGCGCC	.	48.0	5.0	37.0	0.0	.	91
LNX2	222484	ucsc.edu;bcgsc.ca	37	13	28124470	28124470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LNX2	NM_153371	exon9	c.A1937G	p.K646R	ACTCACTTTAATC	.	43.0	4.0	33.0	0.0	.	228
LONRF3	79836	ucsc.edu;bcgsc.ca	37	X	118148310	118148310	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LONRF3	NM_001031855	exon10	c.C2115A	p.A705A	AGACGCCGATCCT	.	46.0	4.0	73.0	0.0	.	289
LRCH4	4034	ucsc.edu;bcgsc.ca	37	7	100175837	100175837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRCH4	NM_002319	exon7	c.T893C	p.L298P	GAGTCCAGCCCAC	.	44.0	4.0	53.0	0.0	.	136
LRMP	4033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	25232338	25232338	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRMP	NM_001204126	exon6	c.T78A	p.Y26X	GGAATATTCCTCA	.	123.0	22.0	109.0	0.0	.	228
LRRC30	339291	ucsc.edu;bcgsc.ca	37	18	7231329	7231329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRRC30	NM_001105581	exon1	c.G193T	p.D65Y	ATCCCCGACTTTC	.	40.0	4.0	44.0	0.0	.	24
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70501869	70501869	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRRC7	NM_020794	exon17	c.C1947T	p.T649T	TGAGACCCCTCTG	.	75.0	9.0	71.0	0.0	.	163
LRRTM3	347731	ucsc.edu;bcgsc.ca	37	10	68687800	68687800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	LRRTM3	NM_178011	exon2	c.C1126A	p.P376T	GCTCTCCCAAAGC	.	35.0	4.0	46.0	0.0	.	93
MAPKAPK5	8550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112308091	112308091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MAPKAPK5	NM_139078	exon6	c.G410A	p.R137Q	CTCTGCGGCACTG	.	151.0	27.0	149.0	0.0	.	1215
MARCO	8685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	119739211	119739211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MARCO	NM_006770	exon10	c.C880T	p.P294S	GGTTTTCCTGGAG	.	89.0	27.0	84.0	0.0	.	95
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	128119304	128119304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	METTL2B	NM_018396	exon3	c.G295A	p.E99K	TTTACCGAATTCC	.	250.0	41.0	238.0	0.0	.	23
MLF2	8079	ucsc.edu;bcgsc.ca	37	12	6859046	6859046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MLF2	NM_005439	exon7	c.A527G	p.E176G	CGCTCCTCCTGGT	.	31.0	5.0	29.0	0.0	.	153
MLPH	79083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238434305	238434305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MLPH	NM_001042467	exon7	c.A737T	p.E246V	TGGAGGAGGCTGA	.	52.0	14.0	40.0	0.0	.	91
MPHOSPH10	10199	ucsc.edu;bcgsc.ca	37	2	71366928	71366928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MPHOSPH10	NM_005791	exon6	c.C1244A	p.P415H	TAGCACCTGTGAT	.	43.0	4.0	36.0	0.0	.	93
MPP3	4356	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41879127	41879127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MPP3	NM_001932	exon20	c.T1700C	p.V567A	AAGACCACTTTGA	.	20.0	5.0	25.0	0.0	.	91
MRPS25	64432	ucsc.edu;bcgsc.ca	37	3	15094002	15094002	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MRPS25	NM_022497	exon4	c.C468A	p.P156P	CTCCTTGGGTAAT	.	48.0	4.0	73.0	0.0	.	90
MTG1	92170	ucsc.edu;bcgsc.ca	37	10	135211954	135211954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MTG1	NM_138384	exon4	c.T298C	p.L100L	CAACACTTAGAAG	.	42.0	5.0	40.0	0.0	.	91
MUC16	94025	ucsc.edu;bcgsc.ca	37	19	9048403	9048403	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MUC16	NM_024690	exon5	c.T33228C	p.S11076S	CCCATGACTGGTG	.	48.0	4.0	78.0	0.0	.	566
MYH10	4628	ucsc.edu;bcgsc.ca	37	17	8381680	8381680	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYH10	NM_001256012	exon41	c.A5682G	p.R1894R	CGCGTGTCGACGC	.	47.0	4.0	61.0	0.0	.	92
MYO16	23026	broad.mit.edu;mdanderson.org	37	13	109507803	109507803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYO16	NM_001198950	exon11	c.C1261T	p.P421S	CTAATGCCTCCTG	.	56.0	11.0	57.0	2.0	.	142
MYO3B	140469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171358299	171358299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYO3B	NM_138995	exon28	c.G3294T	p.W1098C	AGCCTGGAGAGGA	.	38.0	14.0	48.0	0.0	.	530
MYT1	4661	ucsc.edu;bcgsc.ca	37	20	62839474	62839474	+	Missense_Mutation	SNP	C	C	A	rs200028860	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MYT1	NM_004535	exon7	c.C925A	p.P309T	GCAGCTCCTGATG	.	27.0	6.0	21.0	0.0	C|1.000;T|0.000	704
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41347052	41347052	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NBR1	NM_031862	exon14	c.T1746G	p.P582P	CACCCCTGTGGGT	.	117.0	16.0	102.0	0.0	.	130
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	124835268	124835268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NCOR2	NM_006312	exon30	c.G3709A	p.V1237I	ACAGGACGTCAGC	.	32.0	10.0	14.0	0.0	.	229
NEMF	9147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50269987	50269987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NEMF	NM_004713	exon20	c.A1883G	p.E628G	AAATATTCTCCAG	.	105.0	32.0	105.0	0.0	.	90
NLRC5	84166	ucsc.edu;bcgsc.ca	37	16	57075465	57075465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NLRC5	NM_032206	exon17	c.A3008G	p.H1003R	GCTGCCACCTCGG	.	35.0	4.0	33.0	0.0	.	159
NPAT	4863	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108032148	108032148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NPAT	NM_002519	exon17	c.C3665T	p.S1222L	CCTACTGAAAGTA	.	250.0	42.0	285.0	1.0	.	117
NPHP3	27031	ucsc.edu;bcgsc.ca	37	3	132418879	132418879	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NPHP3	NM_153240	exon12	c.T1770C	p.S590S	CAGAGCAGAGACT	.	41.0	4.0	32.0	0.0	.	91
NPR1	4881	ucsc.edu;bcgsc.ca	37	1	153660156	153660156	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NPR1	NM_000906	exon14	c.T2139C	p.P713P	ACCCCCTGTGCGG	.	60.0	4.0	29.0	0.0	.	393
NR3C2	4306	ucsc.edu;bcgsc.ca	37	4	149115938	149115938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NR3C2	NM_001166104	exon4	c.G1973T	p.C658F	AGTCTGCAAGCAG	.	32.0	5.0	37.0	0.0	.	154
NTN4	59277	ucsc.edu;bcgsc.ca	37	12	96181034	96181034	+	Silent	SNP	G	G	A	rs138865446	byfrequency	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NTN4	NM_021229	exon2	c.C268T	p.L90L	ATGGCAGGTGAGC	.	43.0	4.0	36.0	0.0	G|1.000;A|0.000	92
OAS2	4939	ucsc.edu;bcgsc.ca	37	12	113433226	113433226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	OAS2	NM_002535	exon3	c.C574A	p.R192S	GACAACCGTCCTG	.	41.0	4.0	48.0	0.0	.	91
OSBPL8	114882	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	76765334	76765334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	OSBPL8	NM_020841	exon19	c.A1948G	p.T650A	TATCAGTCTTTTT	.	65.0	12.0	54.0	0.0	.	69
OTOGL	283310	ucsc.edu;bcgsc.ca	37	12	80655780	80655780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_173591	exon18	c.C1894A	p.Q632K	ACACCACAACTTC	.	50.0	6.0	34.0	0.0	.	.
PARP4	143	ucsc.edu;bcgsc.ca	37	13	25026551	25026551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PARP4	NM_006437	exon24	c.G3007T	p.G1003C	CGATACCGCAGGC	.	45.0	4.0	39.0	0.0	.	94
PASD1	139135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	150839639	150839639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PASD1	NM_173493	exon12	c.G1201T	p.A401S	CAGAATGCATTGG	.	109.0	21.0	94.0	0.0	.	133
PCDH10	57575	ucsc.edu;bcgsc.ca	37	4	134071608	134071608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PCDH10	NM_032961	exon1	c.C313A	p.L105M	CTGGAGCTGTTCC	.	36.0	4.0	31.0	0.0	.	92
PCDHGA8	9708	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140772531	140772531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_014004	exon1	c.G151T	p.D51Y	TCCAAGGACCTGG	.	51.0	8.0	42.0	0.0	.	.
PCSK4	54760	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1484037	1484037	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PCSK4	NM_017573	exon9	c.G1158A	p.A386A	CTCCAGCGCTAGG	.	33.0	11.0	28.0	0.0	.	90
PDE10A	10846	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165749696	165749696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PDE10A	NM_001130690	exon21	c.G2183T	p.G728V	TAGAACCCAAGCT	.	37.0	10.0	21.0	0.0	.	519
PHKB	5257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47533690	47533690	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PHKB	NM_000293	exon3	c.C190G	p.Q64E	CTGTATCAAAGTC	.	23.0	7.0	32.0	0.0	.	154
PIGZ	80235	ucsc.edu;bcgsc.ca	37	3	196678748	196678748	+	Missense_Mutation	SNP	G	G	T	rs201038840	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PIGZ	NM_025163	exon2	c.C155A	p.P52Q	GTCTGCGGAAGGA	.	44.0	4.0	45.0	0.0	G|0.999;A|0.000	93
PLCE1	51196	ucsc.edu;bcgsc.ca	37	10	95791057	95791057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PLCE1	NM_016341	exon2	c.A254G	p.N85S	ATGAGAACAGTAA	.	45.0	4.0	46.0	0.0	.	229
PLEK	5341	ucsc.edu;bcgsc.ca	37	2	68607905	68607905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PLEK	NM_002664	exon3	c.A249G	p.A83A	CCAGGCAGCCTTC	.	54.0	5.0	39.0	0.0	.	91
PLXNA1	5361	ucsc.edu;bcgsc.ca	37	3	126746843	126746843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PLXNA1	NM_032242	exon23	c.G4423A	p.G1475S	GAGAAGGGCCCCA	.	37.0	4.0	52.0	0.0	.	93
POLK	51426	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74892708	74892708	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	POLK	NM_016218	exon13	c.T2190C	p.S730S	TTCTAGTCTCCCA	.	44.0	7.0	36.0	0.0	.	229
POLR2A	5430	ucsc.edu;bcgsc.ca	37	17	7416382	7416382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	POLR2A	NM_000937	exon29	c.A4799T	p.Y1600F	CTGCCTACGAGCC	.	57.0	5.0	77.0	0.0	.	91
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4945347	4945347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PPL	NM_002705	exon11	c.A1157T	p.Q386L	ACCTGCTGGCCTC	.	26.0	4.0	34.0	0.0	.	95
PPP1CA	5499	ucsc.edu;bcgsc.ca	37	11	67166297	67166297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PPP1CA	NM_001008709	exon6	c.A811G	p.K271E	GCCGCTTGGCAAA	.	20.0	4.0	17.0	0.0	.	659
PPP1R15A	23645	ucsc.edu;bcgsc.ca	37	19	49379178	49379178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PPP1R15A	NM_014330	exon3	c.G1973A	p.R658H	CTTCCCGCTCGTC	.	56.0	9.0	64.0	0.0	.	226
PRDM16	63976	ucsc.edu;bcgsc.ca	37	1	3350306	3350306	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRDM16	NM_022114	exon17	c.G3762A	p.L1254L	TTCTCTGGACGCT	.	42.0	4.0	29.0	0.0	.	660
PRKCG	5582	ucsc.edu;bcgsc.ca	37	19	54403529	54403529	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRKCG	NM_002739	exon12	c.T1324C	p.L442L	GGAGACTTGATGT	.	32.0	5.0	29.0	1.0	.	1367
PRPS2	5634	broad.mit.edu;bcgsc.ca	37	X	12838909	12838909	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRPS2	NM_001039091	exon6	c.G860C	p.C287S	AACACTGCACCAA	.	50.0	7.0	52.0	0.0	.	130
PRRT2	112476	ucsc.edu;bcgsc.ca	37	16	29825202	29825202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PRRT2	NM_001256442	exon2	c.G827T	p.C276F	TGTCCTGCTTCTG	.	40.0	4.0	44.0	0.0	.	68
PSD3	23362	ucsc.edu;bcgsc.ca	37	8	18432732	18432732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PSD3	NM_015310	exon13	c.C2545A	p.H849N	ATGCGTGGTGCAC	.	60.0	5.0	69.0	0.0	.	93
RAB34	83871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27041897	27041897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RAB34	NM_001144943	exon10	c.T797C	p.F266S	CGGAAGAAGAATT	.	41.0	12.0	26.0	0.0	.	227
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	130841171	130841171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RAPGEF6	NM_001164387	exon10	c.T987A	p.S329R	TGGATGACTGATT	.	114.0	20.0	70.0	0.0	.	661
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178420786	178420786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RASAL2	NM_170692	exon10	c.G1708A	p.D570N	CTGATAGACCATC	.	54.0	19.0	66.0	0.0	.	155
REV1	51455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	100019252	100019253	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	REV1	NM_016316	exon21	c.3395_3396del	p.1132_1132del	AGAAGCAGAGAGT	.	64.0	21.0	32.0	0.0	.	92
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111709275	111709275	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	REV3L	NM_002912	exon8	c.G876T	p.V292V	TGCTGGCACAAAC	.	41.0	4.0	38.0	0.0	.	294
RIC8B	55188	ucsc.edu;bcgsc.ca	37	12	107254187	107254187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RIC8B	NM_018157	exon8	c.C1448A	p.P483Q	CAAAACCAAAGTA	.	39.0	4.0	53.0	0.0	.	91
RIMS4	140730	ucsc.edu;bcgsc.ca	37	20	43384815	43384815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RIMS4	NM_001205317	exon6	c.C773T	p.S258F	TCGAGGGACAACT	.	44.0	6.0	33.0	0.0	.	94
RIN1	9610	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66101485	66101485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RIN1	NM_004292	exon7	c.T1496C	p.L499P	TGCAGCAGCTTCT	.	57.0	9.0	46.0	0.0	.	710
RLIM	51132	broad.mit.edu;bcgsc.ca	37	X	73812528	73812528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RLIM	NM_183353	exon5	c.622delC	p.Q208fs	TCCTCTGACCTCT	.	68.0	9.0	73.0	0.0	.	228
RNF123	63891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49738928	49738928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RNF123	NM_022064	exon16	c.G1282T	p.D428Y	AGCTTCGACGTGC	.	37.0	12.0	32.0	0.0	.	584
RPGR	6103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	38144823	38144823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RPGR	NM_001034853	exon15	c.T3429G	p.N1143K	TAATACATTATTC	.	176.0	40.0	181.0	1.0	.	131
RSF1	51773	ucsc.edu;bcgsc.ca	37	11	77378439	77378439	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RSF1	NM_016578	exon16	c.A3849G	p.E1283E	ATCTGCTTCTGAA	.	42.0	4.0	41.0	0.0	.	93
RTTN	25914	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67871371	67871371	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RTTN	NM_173630	exon3	c.T348C	p.P116P	TTCCGAAGGAAGA	.	85.0	13.0	97.0	1.0	.	141
SEC23A	10484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	39524374	39524374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEC23A	NM_006364	exon14	c.G1632T	p.R544S	CAGCCACCTAAGC	.	96.0	21.0	83.0	0.0	.	95
SEMA3E	9723	ucsc.edu;bcgsc.ca	37	7	83026017	83026017	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEMA3E	NM_012431	exon12	c.A1395G	p.T465T	GTAAATTGTGATT	.	49.0	4.0	36.0	0.0	.	93
SEMA3F	6405	ucsc.edu;bcgsc.ca	37	3	50223132	50223132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEMA3F	NM_004186	exon15	c.T1579C	p.S527P	ATCTCTTCTAAGA	.	45.0	4.0	45.0	0.0	.	279
SEPHS1	22929	ucsc.edu;bcgsc.ca	37	10	13371747	13371747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEPHS1	NM_001195604	exon6	c.A602G	p.K201R	AGGGGTTTTGTCA	.	40.0	5.0	37.0	0.0	.	116
SERPINA10	51156	ucsc.edu;bcgsc.ca	37	14	94752572	94752572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SERPINA10	NM_001100607	exon4	c.A1016G	p.K339R	TTGAACTTCGGAA	.	48.0	8.0	36.0	0.0	.	228
SHCBP1	79801	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	46615855	46615855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SHCBP1	NM_024745	exon13	c.C1805T	p.T602I	GGGTCAGTTCTTG	.	96.0	23.0	110.0	1.0	.	154
SHD	56961	ucsc.edu;bcgsc.ca	37	19	4280289	4280289	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SHD	NM_020209	exon1	c.C229A	p.R77R	AAGCACCGGCTCA	.	42.0	4.0	35.0	0.0	.	90
SLC38A2	54407	ucsc.edu;bcgsc.ca	37	12	46756885	46756885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SLC38A2	NM_018976	exon13	c.G1098T	p.L366F	AGTTCCCAAGATA	.	40.0	5.0	47.0	0.0	.	226
SLC6A9	6536	ucsc.edu;bcgsc.ca	37	1	44466893	44466893	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SLC6A9	NM_201649	exon10	c.T1497C	p.Y499Y	GGTCACATAGGTC	.	44.0	4.0	52.0	1.0	.	90
SMARCA4	6597	ucsc.edu;bcgsc.ca	37	19	11118666	11118666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SMARCA4	NM_003072	exon14	c.A2090G	p.D697G	GCGATGACGTCTC	.	45.0	4.0	43.0	0.0	.	1523
SNX14	57231	ucsc.edu;bcgsc.ca	37	6	86303303	86303303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SNX14	NM_153816	exon1	c.T134C	p.L45P	CTGTTAAGAAGCA	.	45.0	4.0	34.0	0.0	.	226
SPG11	80208	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44943731	44943731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SPG11	NM_025137	exon6	c.G1414T	p.V472L	TGTCTACAGGAAT	.	42.0	8.0	50.0	0.0	.	95
SRM	6723	ucsc.edu;bcgsc.ca	37	1	11118901	11118901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SRM	NM_003132	exon3	c.A337G	p.K113E	GGTGCTTCACCAC	.	37.0	4.0	36.0	0.0	.	90
ST8SIA1	6489	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22486954	22486954	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ST8SIA1	NM_003034	exon1	c.C213G	p.N71K	GGTCTGGTTCCTC	.	27.0	9.0	21.0	0.0	.	93
SULF2	55959	ucsc.edu;bcgsc.ca	37	20	46307514	46307514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SULF2	NM_001161841	exon8	c.C1099A	p.P367T	TGGTGGGGGCCAG	.	49.0	5.0	52.0	0.0	.	293
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152683374	152683374	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SYNE1	NM_033071	exon64	c.C10251A	p.A3417A	CAGGTTGGCTTCC	.	40.0	4.0	53.0	0.0	.	607
TENM1	10178	broad.mit.edu;ucsc.edu	37	X	123695669	123695669	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001163278	exon15	c.2288-2A>T	.	GCCATCTGAAAAG	.	47.0	5.0	25.0	0.0	.	.
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137988754	137988754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	THSD7B	.	.	.	.	AAAAACTCAGATG	.	92.0	16.0	84.0	0.0	.	75
TMEM2	23670	ucsc.edu;bcgsc.ca	37	9	74360144	74360144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TMEM2	NM_001135820	exon4	c.A824G	p.D275G	GCCGTGTCTTGGT	.	38.0	4.0	48.0	0.0	.	92
TMEM232	642987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109941886	109941886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001039763	exon9	c.C1005A	p.S335R	CATAATGCTTGAA	.	143.0	22.0	129.0	0.0	.	.
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24802369	24802369	+	Silent	SNP	G	G	A	rs113829020	byfrequency;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TNRC6A	NM_014494	exon6	c.G2406A	p.G802G	CCAGGGGGGGTGG	.	24.0	12.0	27.0	0.0	G|0.997;C|0.003	92
TPM2	7169	ucsc.edu;bcgsc.ca	37	9	35685294	35685294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TPM2	NM_213674	exon5	c.T535C	p.S179P	CCTCCGAGCGCTC	.	32.0	4.0	27.0	0.0	.	515
TRAIP	10293	broad.mit.edu;bcgsc.ca	37	3	49869470	49869470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TRAIP	NM_005879	exon11	c.C916T	p.R306C	GCCGGCGGAGCTT	.	40.0	9.0	33.0	0.0	.	849
TRAM1	23471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	71499196	71499196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TRAM1	NM_014294	exon8	c.A680G	p.Y227C	ACAAAATAATGTA	.	114.0	22.0	102.0	0.0	.	227
TSC2	7249	ucsc.edu;bcgsc.ca	37	16	2112539	2112539	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TSC2	NM_001114382	exon13	c.C1299T	p.S433S	GCAGTCCATCCAC	.	42.0	4.0	40.0	0.0	.	1908
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179407524	179407524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TTN	NM_001267550	exon348	c.G97057A	p.V32353I	CTGTGACACGCTC	.	122.0	20.0	104.0	0.0	.	636
UBASH3B	84959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122659905	122659905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UBASH3B	NM_032873	exon6	c.G869A	p.S290N	AGACCAGCACCAG	.	48.0	9.0	32.0	0.0	.	68
UCN2	90226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	48600437	48600437	+	Nonsense_Mutation	SNP	G	G	A	rs149022309		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UCN2	NM_033199	exon2	c.C121T	p.R41X	CAGGTCGGGGAGT	.	71.0	17.0	74.0	0.0	G|1.000;A|0.000	68
USP12	219333	ucsc.edu;bcgsc.ca	37	13	27643523	27643523	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	USP12	NM_182488	exon10	c.1012-2A>G	.	ATTTTCTGTGAGG	.	46.0	4.0	57.0	0.0	.	522
USP46	64854	ucsc.edu;bcgsc.ca	37	4	53494294	53494294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	USP46	NM_022832	exon3	c.G154A	p.A52T	ACAATGCCTGAAG	.	43.0	4.0	56.0	0.0	.	637
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	144783916	144783916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UTRN	NM_007124	exon22	c.C2980T	p.Q994X	GATGTGCAAGGAA	.	86.0	22.0	81.0	0.0	.	95
VWA3A	146177	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22144300	22144300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	VWA3A	NM_173615	exon20	c.A1952G	p.E651G	TGGGCGAGCCAAA	.	27.0	6.0	24.0	1.0	.	1
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49983837	49983837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	WDFY4	NM_020945	exon15	c.A2849G	p.N950S	GAGGCAACCCTGG	.	64.0	7.0	40.0	0.0	.	22
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54362254	54362254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	WDR7	NM_052834	exon11	c.A1182G	p.I394M	AATTATAGATCAG	.	130.0	29.0	130.0	0.0	.	93
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100349904	100349904	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZAN	.	.	.	.	CCCACCATCCCCA	.	288.0	43.0	338.0	1.0	.	142
ZCCHC14	23174	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87446754	87446754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZCCHC14	NM_015144	exon11	c.G1240A	p.G414S	AACTGCCTTCCCG	.	30.0	7.0	23.0	0.0	.	154
ZIC5	85416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100617641	100617641	+	Missense_Mutation	SNP	G	G	A	rs146570814		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZIC5	NM_033132	exon2	c.C1982T	p.T661M	TGTATCGTCCGCA	.	63.0	13.0	60.0	0.0	G|1.000;A|0.000	90
ZNF233	353355	ucsc.edu;bcgsc.ca	37	19	44777921	44777921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF233	NM_001207005	exon5	c.T1108C	p.C370R	AAGTTGTGTACAT	.	44.0	4.0	48.0	0.0	.	92
ZNF473	25888	ucsc.edu;bcgsc.ca	37	19	50550100	50550100	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF473	NM_015428	exon5	c.T2400C	p.N800N	AGCAAATCTAACA	.	34.0	4.0	33.0	0.0	.	91
ZNF532	55205	ucsc.edu;bcgsc.ca	37	18	56646394	56646394	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF532	NM_018181	exon9	c.C3258A	p.A1086A	GTACGCCTGCTCG	.	47.0	4.0	60.0	0.0	.	154
ZNF578	147660	ucsc.edu;bcgsc.ca	37	19	53015353	53015353	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_001099694	exon6	c.T1719A	p.G573G	GTGTGGTAAGGCT	.	40.0	4.0	39.0	0.0	.	.
ZNF75D	7626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134426310	134426310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ZNF75D	NM_007131	exon3	c.A501C	p.Q167H	CATTGGTTGGGGC	.	74.0	10.0	87.0	1.0	.	130
