Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ANGPTL7	10218	hgsc.bcm.edu	hg19	1	11249872	11249872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	ANGPTL7	NM_021146	exon1	c.T236C	p.M79T	TGGTCATGCAGGT	.	178.0	10.0	187.0	0.0	.	23	.	.	Atlas-SNP
RIMKLA	284716	hgsc.bcm.edu	hg19	1	42880608	42880608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	RIMKLA	NM_173642	exon5	c.T1139C	p.I380T	ACAACATTAACAA	.	53.0	7.0	56.0	0.0	.	32	.	.	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46500510	46500510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	MAST2	NM_015112	exon29	c.G4169A	p.R1390Q	TCTCACGGCCCAA	.	119.0	27.0	115.0	0.0	.	136	.	.	Atlas-SNP
MIER1	57708	hgsc.bcm.edu	hg19	1	67423897	67423897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	MIER1	NM_001077700	exon5	c.A495C	p.E165D	TGGGGAAAATAAA	.	97.0	21.0	98.0	0.0	.	86	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103387110	103387110	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	COL11A1	NM_080629	exon48	c.A3708T	p.P1236P	TGGGCCTGGAGGA	.	1076.0	94.0	917.0	0.0	.	972	.	.	Atlas-SNP
FBXO28	23219	hgsc.bcm.edu	hg19	1	224345064	224345064	+	Missense_Mutation	SNP	G	G	A	rs201209850	bycluster	TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FBXO28	NM_001136115	exon4	c.G527A	p.R176H	AGGACCGTCTGCA	.	169.0	12.0	131.0	0.0	.	34	.	G|0.999;A|0.001	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	hg19	2	49210076	49210076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FSHR	NM_000145	exon8	c.C643T	p.H215Y	CTCCGTGGAAAAC	.	268.0	57.0	272.0	0.0	.	164	.	.	Atlas-SNP
EIF2AK3	9451	hgsc.bcm.edu	hg19	2	88857341	88857341	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	EIF2AK3_ENST00000303236,NS,carcinoma,0,2	EIF2AK3	NM_004836	exon17	c.C3264T	p.L1088L	CTGTCTGAGCACT	.	158.0	35.0	182.0	0.0	.	160	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141526828	141526828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	LRP1B	NM_018557	exon35	c.G5712T	p.M1904I	TATAGGCATCAAA	.	105.0	27.0	107.0	0.0	.	1315	.	.	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	hg19	2	171355106	171355106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	MYO3B	NM_001083615	exon26	c.T3019C	p.Y1007H	AGGTATTATTACT	.	64.0	4.0	81.0	0.0	.	320	.	.	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14939057	14939057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FGD5	NM_152536	exon5	c.C2790A	p.D930E	CATGGACCATGAA	.	156.0	43.0	182.0	0.0	.	248	.	.	Atlas-SNP
SCN5A	6331	hgsc.bcm.edu	hg19	3	38640520	38640520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SCN5A	NM_001160160	exon13	c.G1912A	p.G638S	GCCCGCCTGGCTC	.	97.0	20.0	89.0	0.0	.	634	.	.	Atlas-SNP
CCK	885	hgsc.bcm.edu	hg19	3	42299622	42299622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	CCK,colon,carcinoma,0,1	CCK	NM_000729	exon5	c.C316T	p.R106C	CACTGCGACGGCC	.	139.0	18.0	138.0	0.0	.	15	.	.	Atlas-SNP
DAG1	1605	hgsc.bcm.edu	hg19	3	49568955	49568955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	DAG1	NM_001177642	exon4	c.G1011T	p.R337S	ATCCAGGATCGTG	.	61.0	10.0	79.0	0.0	.	60	.	.	Atlas-SNP
ITIH1	3697	hgsc.bcm.edu	hg19	3	52824803	52824803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	ITIH1	NM_002215	exon20	c.T2360C	p.V787A	TGGTGGTGTCTGT	.	108.0	14.0	108.0	0.0	.	108	.	.	Atlas-SNP
PDZRN3	23024	hgsc.bcm.edu	hg19	3	73673733	73673733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	PDZRN3	NM_015009	exon1	c.T244C	p.C82R	ACGCGCACTTGAT	.	74.0	26.0	61.0	0.0	.	196	.	.	Atlas-SNP
CCDC54	84692	hgsc.bcm.edu	hg19	3	107097051	107097051	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	CCDC54	NM_032600	exon1	c.A617C	p.D206A	CCACTGACCATCT	.	442.0	44.0	383.0	0.0	.	56	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121200637	121200637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	POLQ	NM_199420	exon19	c.C5993T	p.P1998L	GAATCTGGATCTA	.	155.0	39.0	146.0	0.0	.	273	.	.	Atlas-SNP
KCNMB3	27094	hgsc.bcm.edu	hg19	3	178960728	178960728	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	KCNMB3	NM_014407	exon4	c.T804C	p.I268I	CCTCATAATGCAC	.	242.0	46.0	242.0	0.0	.	46	.	.	Atlas-SNP
SENP5	205564	hgsc.bcm.edu	hg19	3	196613318	196613318	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SENP5	NM_152699	exon2	c.G1266T	p.V422V	ATCTGTGAGTAGC	.	81.0	12.0	93.0	0.0	.	68	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85626603	85626603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	WDFY3	NM_014991	exon54	c.C8279T	p.T2760I	TCATCTGTTTGTG	.	168.0	34.0	140.0	0.0	.	314	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123236737	123236737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	KIAA1109	NM_015312	exon59	c.T10433A	p.L3478Q	CAACACTGACAGG	.	152.0	27.0	153.0	0.0	.	424	.	.	Atlas-SNP
RXFP1	59350	hgsc.bcm.edu	hg19	4	159568324	159568324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	RXFP1	NM_001253727	exon16	c.C1808T	p.A603V	TTGGAGCCCAGAT	.	95.0	21.0	71.0	0.0	.	98	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	167020507	167020507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	TLL1	NM_012464	exon20	c.C2735A	p.P912Q	ACTACCCAGGACA	.	274.0	78.0	289.0	0.0	.	194	.	.	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	hg19	5	72179050	72179050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	TNPO1	NM_002270	exon11	c.T1141A	p.W381R	TCTGACTGGAATC	.	336.0	91.0	332.0	0.0	.	90	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139219625	139219625	+	Missense_Mutation	SNP	G	G	A	rs200345805	bycluster	TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	PSD2,NS,adenocarcinoma,0,1	PSD2	NM_032289	exon14	c.G1982A	p.R661Q	AACTGCGGTCTCA	.	60.0	9.0	68.0	0.0	.	88	.	G|0.999;A|0.001	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140793290	140793290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	PCDHGA10	NM_032090	exon1	c.C548A	p.S183Y	ACTTCTCCCTAAG	.	81.0	24.0	79.0	0.0	.	114	.	.	Atlas-SNP
PCDHGB7	56099	hgsc.bcm.edu	hg19	5	140799322	140799322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	PCDHGB7	NM_018927	exon1	c.G1896C	p.L632F	TGCTTTGGGTGAC	.	102.0	17.0	91.0	0.0	.	117	.	.	Atlas-SNP
SLC34A1	6569	hgsc.bcm.edu	hg19	5	176825095	176825095	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SLC34A1	NM_003052	exon13	c.G1728A	p.W576X	GACATGGGACTTC	.	521.0	157.0	479.0	1.0	.	73	.	.	Atlas-SNP
TBC1D22B	55633	hgsc.bcm.edu	hg19	6	37281660	37281660	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	TBC1D22B,colon,carcinoma,0,1	TBC1D22B	NM_017772	exon10	c.G1158T	p.R386R	CAGCCGGATTGAT	.	191.0	35.0	170.0	0.0	.	37	.	.	Atlas-SNP
NCOA7	135112	hgsc.bcm.edu	hg19	6	126176369	126176369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	NCOA7	NM_001199619	exon4	c.A254G	p.K85R	AACTAAAGAGATA	.	99.0	23.0	92.0	0.0	.	92	.	.	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	hg19	7	24870414	24870414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	OSBPL3	NM_015550	exon16	c.C1857A	p.D619E	GCCCTTGTCCTCC	.	140.0	34.0	120.0	0.0	.	100	.	.	Atlas-SNP
POR	5447	hgsc.bcm.edu	hg19	7	75583458	75583458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	POR	NM_000941	exon2	c.A148G	p.K50E	AGAAAGAAAAAAG	.	173.0	12.0	123.0	0.0	.	46	.	.	Atlas-SNP
GIGYF1	64599	hgsc.bcm.edu	hg19	7	100285497	100285497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	GIGYF1	NM_022574	exon3	c.G175C	p.E59Q	GCAGCTCTTCCGG	.	121.0	38.0	95.0	0.0	.	113	.	.	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111398823	111398823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	DOCK4	NM_014705	exon40	c.C4159A	p.P1387T	GAATGGGAGTCAC	.	143.0	28.0	99.0	0.0	.	365	.	.	Atlas-SNP
CPED1	79974	hgsc.bcm.edu	hg19	7	120906375	120906375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	.	NM_024913	exon19	c.G2405T	p.G802V	TACATGGCACTAA	.	160.0	19.0	116.0	0.0	.	.	.	.	Atlas-SNP
AASS	10157	hgsc.bcm.edu	hg19	7	121758381	121758381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	AASS	NM_005763	exon6	c.G667A	p.G223R	CAGTTCCTGTGAA	.	91.0	18.0	49.0	0.0	.	123	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73848214	73848214	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	KCNB2	NM_004770	exon3	c.T624C	p.I208I	CACCATTGCTTTG	.	449.0	167.0	159.0	0.0	.	228	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73848327	73848327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	KCNB2	NM_004770	exon3	c.T737C	p.M246T	TTACCATGGAGTA	.	585.0	41.0	203.0	0.0	.	228	.	.	Atlas-SNP
FBXO43	286151	hgsc.bcm.edu	hg19	8	101146559	101146559	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FBXO43	NM_001029860	exon4	c.C1708A	p.R570R	GGAGCCGAGTGGC	.	384.0	42.0	120.0	0.0	.	155	.	.	Atlas-SNP
SLC30A8	169026	hgsc.bcm.edu	hg19	8	118159313	118159313	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SLC30A8	NM_173851	exon2	c.G192A	p.A64A	GGGGGCGAATGAG	.	488.0	97.0	172.0	0.0	.	102	.	.	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	1000560	1000560	+	Silent	SNP	C	C	T	rs376836623		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	AP2A2	NM_001242837	exon15	c.C2088T	p.V696V	TGTGGTCGCGCCT	.	26.0	8.0	38.0	0.0	.	50	.	.	Atlas-SNP
TUB	7275	hgsc.bcm.edu	hg19	11	8118839	8118839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	TUB	NM_003320	exon8	c.T917G	p.L306R	AGGATCTTGAGGA	.	203.0	21.0	179.0	0.0	.	71	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73076531	73076531	+	Missense_Mutation	SNP	G	G	T	rs141322412	bycluster;byfrequency;alternate_allele	TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	ARHGEF17	NM_014786	exon19	c.G5647T	p.V1883L	GCCCACGTGTGTC	.	93.0	22.0	100.0	0.0	.	117	.	G|0.999;A|0.001	Atlas-SNP
BACE1	23621	hgsc.bcm.edu	hg19	11	117162462	117162462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	BACE1	NM_012104	exon6	c.A908C	p.E303A	GCAGCTTCAAACA	.	127.0	12.0	128.0	0.0	.	33	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124268707	124268707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	DNAH10	NM_207437	exon8	c.G1030C	p.V344L	TCCACCGTGGAGC	.	131.0	38.0	91.0	0.0	.	888	.	.	Atlas-SNP
DIS3	22894	hgsc.bcm.edu	hg19	13	73346861	73346861	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	DIS3	NM_014953	exon9	c.G1356T	p.L452L	CTTTGGCAGAAAA	.	490.0	172.0	395.0	1.0	.	103	.	.	Atlas-SNP
INSM2	84684	hgsc.bcm.edu	hg19	14	36005072	36005072	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	INSM2	NM_032594	exon1	c.A1614G	p.P538P	CTCTCCAGGGCTG	.	130.0	38.0	102.0	0.0	.	39	.	.	Atlas-SNP
SNAPC1	6617	hgsc.bcm.edu	hg19	14	62248976	62248976	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SNAPC1	NM_003082	exon8	c.A837G	p.S279S	CAAATCAAGAAGG	.	136.0	54.0	105.0	0.0	.	32	.	.	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102916924	102916924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	TECPR2	NM_001172631	exon15	c.G3344A	p.R1115H	TTCCCCGTGGGAC	.	107.0	10.0	97.0	0.0	.	114	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28437148	28437148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	HERC2	NM_004667	exon53	c.G8410T	p.G2804C	CGCTGCCGTCAAT	.	70.0	12.0	76.0	0.0	.	501	.	.	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	hg19	15	38773609	38773609	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FAM98B	NM_001042429	exon7	c.T846A	p.I282I	GATCATTAGGACA	.	191.0	38.0	188.0	0.0	.	53	.	.	Atlas-SNP
SEC14L5	9717	hgsc.bcm.edu	hg19	16	5050723	5050723	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SEC14L5	NM_014692	exon9	c.G1038A	p.G346G	CGTGGGGGAGGAG	.	101.0	19.0	112.0	0.0	.	79	.	.	Atlas-SNP
KIAA0430	9665	hgsc.bcm.edu	hg19	16	15706458	15706458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	KIAA0430	NM_001184998	exon17	c.T3430C	p.S1144P	GCTTGGAGTATCC	.	116.0	29.0	102.0	0.0	.	154	.	.	Atlas-SNP
MTSS1L	92154	hgsc.bcm.edu	hg19	16	70710812	70710812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	MTSS1L	NM_138383	exon10	c.T802G	p.S268A	AGCTGGAGCTGCT	.	103.0	24.0	109.0	0.0	.	22	.	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1584925	1584925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	PRPF8	NM_006445	exon6	c.T713G	p.L238R	CGGTAGAGAGTCG	.	137.0	33.0	158.0	0.0	.	169	.	.	Atlas-SNP
TEKT3	64518	hgsc.bcm.edu	hg19	17	15234544	15234544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	TEKT3	NM_031898	exon3	c.T359A	p.L120Q	ACTCTTAGTTTCT	.	159.0	44.0	170.0	0.0	.	64	.	.	Atlas-SNP
RNF112	7732	hgsc.bcm.edu	hg19	17	19319264	19319264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	RNF112	NM_007148	exon14	c.C1672T	p.L558F	GCCGGGCTCATGG	.	38.0	10.0	39.0	0.0	.	37	.	.	Atlas-SNP
IKZF3	22806	hgsc.bcm.edu	hg19	17	37922198	37922198	+	Missense_Mutation	SNP	C	C	T	rs149299224	bycluster	TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	IKZF3	NM_012481	exon8	c.G1375A	p.V459I	AGAGGACGCGGCA	.	123.0	19.0	113.0	0.0	.	79	.	C|1.000;T|0.000	Atlas-SNP
SLC39A11	201266	hgsc.bcm.edu	hg19	17	70845832	70845832	+	Missense_Mutation	SNP	C	C	T	rs373163649		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SLC39A11	NM_001159770	exon6	c.G563A	p.G188D	CTGCTGCCGCCGG	.	62.0	14.0	74.0	0.0	.	32	.	.	Atlas-SNP
COG1	9382	hgsc.bcm.edu	hg19	17	71202364	71202364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	COG1	NM_018714	exon11	c.T2582G	p.L861R	CACACCTCAACAG	.	95.0	23.0	88.0	0.0	.	46	.	.	Atlas-SNP
ME2	4200	hgsc.bcm.edu	hg19	18	48444552	48444552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	ME2	NM_001168335	exon7	c.A703G	p.I235V	GACCTGATTGATG	.	351.0	29.0	351.0	0.0	.	49	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50923690	50923690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	DCC	NM_005215	exon18	c.A2701G	p.T901A	GACACAACATCTC	.	133.0	13.0	122.0	0.0	.	360	.	.	Atlas-SNP
ZNF57	126295	hgsc.bcm.edu	hg19	19	2917323	2917323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	ZNF57	NM_173480	exon4	c.G704A	p.G235E	TTAATGGGTTCGC	.	129.0	28.0	109.0	0.0	.	57	.	.	Atlas-SNP
NRTN	4902	hgsc.bcm.edu	hg19	19	5827964	5827964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	NRTN	NM_004558	exon2	c.T374C	p.V125A	AGACGGTGCTGTT	.	35.0	8.0	24.0	0.0	.	4	.	.	Atlas-SNP
FARSA	2193	hgsc.bcm.edu	hg19	19	13039211	13039211	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FARSA	NM_004461	exon7	c.C786A	p.L262L	CTGGAAGAGGGCG	.	117.0	21.0	133.0	0.0	.	46	.	.	Atlas-SNP
CEACAM7	1087	hgsc.bcm.edu	hg19	19	42192077	42192077	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	CEACAM7	NM_006890	exon1	c.C18A	p.A6A	TGGACAGGCTGAA	.	73.0	19.0	73.0	0.0	.	33	.	.	Atlas-SNP
CD79A	973	hgsc.bcm.edu	hg19	19	42383663	42383663	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	CD79A	NM_001783	exon3	c.A438G	p.T146T	CATCACAGCCGAG	.	46.0	16.0	52.0	0.0	.	25	.	.	Atlas-SNP
ZNF772	400720	hgsc.bcm.edu	hg19	19	57985762	57985762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	ZNF772	NM_001024596	exon5	c.A350G	p.E117G	GGTATCTCTTCAT	.	25.0	6.0	26.0	0.0	.	42	.	.	Atlas-SNP
CYYR1	116159	hgsc.bcm.edu	hg19	21	27840930	27840930	+	Missense_Mutation	SNP	C	C	A	rs371412046	alternate_allele	TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	CYYR1	NM_052954	exon4	c.G355T	p.D119Y	CGTGGTCGTGACC	.	53.0	11.0	79.0	0.0	.	38	.	.	Atlas-SNP
FOXRED2	80020	hgsc.bcm.edu	hg19	22	36900813	36900813	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	FOXRED2	NM_001102371	exon3	c.C528T	p.S176S	GAGGACGCTGCAG	.	116.0	29.0	105.0	0.0	.	48	.	.	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51117297	51117297	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	SHANK3	NM_033517	exon5	c.G549A	p.G183G	CGATGGGCTCACT	.	93.0	17.0	97.0	0.0	.	96	.	.	Atlas-SNP
PRKX	5613	hgsc.bcm.edu	hg19	X	3573254	3573254	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	PRKX	NM_005044	exon3	c.C535T	p.L179L	CCAGCAGGATGTT	.	118.0	51.0	127.0	0.0	.	29	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12818	12818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	.	ENST00000361567	exon1	c.G482A	p.R161Q	ACGCCCGAGCAGA	.	71.0	15.0	25.0	0.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14384	14384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	.	ENST00000361681	exon1	c.C290T	p.A97V	TCCATCGCTAACC	.	109.0	6.0	44.0	0.0	.	.	.	.	Atlas-SNP
TAT	6898	hgsc.bcm.edu	hg19	16	71604656	71604657	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	TAT	NM_000353	exon8	c.838_839insC	p.K280fs	.	.	124.0	25.0	159.0	0.0	.	80	.	.	Atlas-Indel,Pindel
PPAP2C	8612	hgsc.bcm.edu	hg19	19	287737	287737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	PPAP2C	NM_177543	exon3	c.283delG	p.A95fs	.	.	81.0	11.0	75.0	0.0	.	38	.	.	Atlas-INDEL
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65350076	65350076	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	EHBP1L1	NM_001099409	exon9	c.1932delA	p.P644fs	.	.	118.0	29.0	140.0	0.0	.	64	.	.	Atlas-Indel,Pindel
HRG	3273	hgsc.bcm.edu	hg19	3	186386775	186386776	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	HRG	NM_000412	exon2	c.235_236insC	p.S79fs	.	.	103.0	15.0	89.0	0.0	.	81	.	.	Atlas-Indel,Pindel
MRPL22	29093	hgsc.bcm.edu	hg19	5	154320807	154320807	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9GW-01A-11D-A382-10	TCGA-2Y-A9GW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8a09bb43-1c6d-4d41-901b-0dac97a29aee	c1a9c723-e7ce-4a26-a984-08403614980f	.	MRPL22	NM_014180	exon2	c.58delC	p.R20fs	.	.	170.0	42.0	130.0	0.0	.	18	.	.	Atlas-Indel,Pindel
