Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7725058	7725058	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CAMTA1	NM_015215	exon9	c.A2451G	p.A817A	CCAGGCAGAGATG	.	114.0	46.0	172.0	0.0	.	226	.	.	Atlas-SNP
SFPQ	6421	hgsc.bcm.edu	hg19	1	35653652	35653652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SFPQ	NM_005066	exon7	c.G1737A	p.M579I	ACGAATCATCATC	.	63.0	29.0	48.0	0.0	.	51	.	.	Atlas-SNP
PSMB2	5690	hgsc.bcm.edu	hg19	1	36074978	36074978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PSMB2	NM_002794	exon4	c.G317A	p.G106D	TCATAGCCAGCCA	.	191.0	13.0	164.0	0.0	.	9	.	.	Atlas-SNP
PRCC	5546	hgsc.bcm.edu	hg19	1	156764567	156764567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PRCC	NM_005973	exon5	c.G1290T	p.L430F	GTCATTGACAGAA	.	205.0	54.0	101.0	0.0	.	39	.	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	hg19	1	198700795	198700795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PTPRC	NM_002838	exon18	c.G1914T	p.L638F	TATTTTGTTGGAA	.	208.0	130.0	82.0	0.0	.	229	.	.	Atlas-SNP
FAM177B	400823	hgsc.bcm.edu	hg19	1	222922851	222922851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	FAM177B	NM_207468	exon5	c.A286C	p.T96P	GGTCTTACTCAAC	.	91.0	49.0	36.0	0.0	.	19	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71649966	71649966	+	Missense_Mutation	SNP	A	A	C	rs61739715	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ZNF638	NM_014497	exon22	c.A3322C	p.I1108L	AGTCCAATTGATG	.	139.0	62.0	91.0	0.0	.	179	.	A|0.996;G|0.004	Atlas-SNP
MTHFD2	10797	hgsc.bcm.edu	hg19	2	74438882	74438882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	MTHFD2	NM_006636	exon7	c.A778C	p.I260L	AATCTGATCACAG	.	63.0	29.0	40.0	0.0	.	43	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97302698	97302698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	.	NM_001115016	exon2	c.A175G	p.M59V	AGAGCATGCGGGT	.	185.0	75.0	210.0	0.0	.	.	.	.	Atlas-SNP
MARCH7	64844	hgsc.bcm.edu	hg19	2	160605311	160605311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	MARCH7	NM_022826	exon5	c.G1510A	p.V504I	ATCACAGTAGATA	.	90.0	37.0	69.0	0.0	.	48	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160862301	160862301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PLA2R1	NM_001195641	exon11	c.A1696C	p.S566R	CACTACTGATCAA	.	117.0	58.0	105.0	0.0	.	153	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215838711	215838711	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ABCA12	NM_173076	exon36	c.A5524T	p.T1842S	AATTAGTGATGGG	.	93.0	41.0	47.0	0.0	.	368	.	.	Atlas-SNP
ECEL1	9427	hgsc.bcm.edu	hg19	2	233346546	233346546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ECEL1	NM_004826	exon13	c.G1810A	p.G604R	TGCCCCCGTAGTT	.	177.0	64.0	252.0	0.0	.	73	.	.	Atlas-SNP
ING5	84289	hgsc.bcm.edu	hg19	2	242662639	242662639	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ING5	NM_032329	exon7	c.G633A	p.W211X	TGAGTGGTTTCAC	.	140.0	56.0	181.0	0.0	.	14	.	.	Atlas-SNP
DPPA4	55211	hgsc.bcm.edu	hg19	3	109049584	109049584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	DPPA4	NM_018189	exon5	c.A466C	p.T156P	GGGACGTTTCCCC	.	202.0	93.0	217.0	0.0	.	56	.	.	Atlas-SNP
FAM131A	131408	hgsc.bcm.edu	hg19	3	184062581	184062581	+	Silent	SNP	G	G	T	rs145026576	bycluster;by1000genomes;alternate_allele	TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	FAM131A_ENST00000383847,NS,carcinoma,0,2	FAM131A	NM_144635	exon6	c.G924T	p.S308S	CAACTCGCCCCTC	.	80.0	36.0	115.0	0.0	.	37	.	G|1.000;A|0.000	Atlas-SNP
LMLN	89782	hgsc.bcm.edu	hg19	3	197765494	197765494	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	LMLN	NM_001136049	exon17	c.C2035G	p.L679V	GGCAATCTGTTTC	.	157.0	71.0	73.0	0.0	.	53	.	.	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8220023	8220023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SH3TC1	NM_018986	exon8	c.C865G	p.P289A	CAGGACCCCATCG	.	77.0	26.0	117.0	0.0	.	105	.	.	Atlas-SNP
OR2V2	285659	hgsc.bcm.edu	hg19	5	180582886	180582886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	OR2V2	NM_206880	exon1	c.A944G	p.H315R	GCCAGCACTGAAC	.	81.0	27.0	84.0	0.0	.	56	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	64499079	64499079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	EYS	NM_001142800	exon38	c.A7450G	p.N2484D	TGCCATTGAGCAG	.	76.0	31.0	51.0	0.0	.	527	.	.	Atlas-SNP
HEATR2	54919	hgsc.bcm.edu	hg19	7	794224	794224	+	Splice_Site	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	HEATR2	NM_017802	exon5	c.1025-2A>G	.	CGTTCCAGAGCGC	.	184.0	71.0	238.0	0.0	.	62	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4014141	4014141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SDK1	NM_152744	exon13	c.G1958C	p.G653A	CTGAAGGAGGGAA	.	112.0	52.0	99.0	0.0	.	361	.	.	Atlas-SNP
AP5Z1	9907	hgsc.bcm.edu	hg19	7	4825922	4825922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	.	NM_014855	exon10	c.C1174A	p.L392M	CAGCACCTGTTCA	.	91.0	45.0	131.0	0.0	.	.	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51096609	51096609	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	COBL,bladder,carcinoma,0,1	COBL	NM_015198	exon10	c.C2184T	p.T728T	GGCTCCGGTGGAG	.	110.0	45.0	125.0	0.0	.	167	.	.	Atlas-SNP
GNAT3	346562	hgsc.bcm.edu	hg19	7	80103624	80103624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	GNAT3	NM_001102386	exon5	c.G533A	p.R178Q	TTCACTCGAGAAT	.	60.0	16.0	44.0	0.0	.	65	.	.	Atlas-SNP
DYNC1I1	1780	hgsc.bcm.edu	hg19	7	95665003	95665003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	DYNC1I1	NM_004411	exon13	c.G1354A	p.V452I	GGAGACGTCAATA	.	149.0	61.0	64.0	0.0	.	111	.	.	Atlas-SNP
CPA1	1357	hgsc.bcm.edu	hg19	7	130020953	130020953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CPA1	NM_001868	exon2	c.G80C	p.R27P	TGCTCCGAATCTC	.	266.0	96.0	356.0	0.0	.	73	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3165891	3165891	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CSMD1	NM_033225	exon24	c.C3766T	p.L1256L	AGGTCAGGGTGTT	.	39.0	23.0	61.0	0.0	.	1469	.	.	Atlas-SNP
ADAM7	8756	hgsc.bcm.edu	hg19	8	24349552	24349552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ADAM7	NM_003817	exon14	c.A1493G	p.Y498C	AAGGCTACTGTTT	.	107.0	43.0	58.0	0.0	.	165	.	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35295866	35295866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	UNC13B	NM_006377	exon8	c.G700A	p.D234N	TCCCGGGACTCTT	.	109.0	36.0	131.0	0.0	.	153	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134074363	134074363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	NUP214	NM_005085	exon29	c.A5482G	p.T1828A	ACCACAACAGCAG	.	86.0	35.0	106.0	0.0	.	166	.	.	Atlas-SNP
CAMSAP1	157922	hgsc.bcm.edu	hg19	9	138774767	138774767	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CAMSAP1	NM_015447	exon2	c.A318G	p.G106G	CTGGTGTCCCTGT	.	54.0	26.0	74.0	0.0	.	142	.	.	Atlas-SNP
C9orf172	389813	hgsc.bcm.edu	hg19	9	139741196	139741196	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	C9orf172	NM_001080482	exon1	c.C2330G	p.P777R	TATCCCCCACCTA	.	75.0	17.0	85.0	0.0	.	23	.	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18250708	18250708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SLC39A12	NM_152725	exon3	c.G460A	p.E154K	CAGGATGAAGATT	.	192.0	83.0	126.0	0.0	.	181	.	.	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29782297	29782297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SVIL	NM_021738	exon21	c.C3865T	p.L1289F	CAGTGAGCACCGT	.	111.0	36.0	134.0	0.0	.	226	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37505130	37505130	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ANKRD30A	NM_052997	exon32	c.T2723A	p.I908N	CAAAAATCTTGGA	.	400.0	157.0	158.0	0.0	.	448	.	.	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	hg19	10	48388858	48388858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	RBP3	NM_002900	exon1	c.C2020T	p.R674C	CTGTGCGGTAGGC	.	92.0	45.0	129.0	0.0	.	152	.	.	Atlas-SNP
VDAC2	7417	hgsc.bcm.edu	hg19	10	76980582	76980582	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	VDAC2	NM_001184783	exon8	c.A483G	p.G161G	TGCTGGACCTGCA	.	262.0	114.0	196.0	0.0	.	27	.	.	Atlas-SNP
PDZD8	118987	hgsc.bcm.edu	hg19	10	119133943	119133943	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PDZD8	NM_173791	exon1	c.C796T	p.Q266X	TGAGCTGGGGCAT	.	117.0	53.0	143.0	0.0	.	85	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8662363	8662363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	TRIM66	NM_014818	exon9	c.G1124A	p.C375Y	GGGCTGCAGGCCA	.	52.0	25.0	84.0	0.0	.	45	.	.	Atlas-SNP
EEF1G	1937	hgsc.bcm.edu	hg19	11	62334458	62334458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	EEF1G	NM_001404	exon7	c.C677T	p.P226L	TTTTTAGGTTGGG	.	95.0	30.0	104.0	0.0	.	33	.	.	Atlas-SNP
CTSC	1075	hgsc.bcm.edu	hg19	11	88061352	88061352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CTSC	NM_148170	exon3	c.T331A	p.F111I	TGATAAAATCAGT	.	99.0	42.0	75.0	0.0	.	46	.	.	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	hg19	11	123471213	123471213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	GRAMD1B	NM_020716	exon7	c.A578G	p.Y193C	GGACATATATGAT	.	69.0	18.0	38.0	0.0	.	122	.	.	Atlas-SNP
TNFRSF1A	7132	hgsc.bcm.edu	hg19	12	6438604	6438604	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	TNFRSF1A	NM_001065	exon10	c.C1242T	p.R414R	GGCCTCGCGCCGC	.	299.0	126.0	489.0	1.0	.	39	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41421673	41421673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CNTN1	NM_001843	exon22	c.C2725G	p.P909A	CAGCCTCCAAGGA	.	91.0	44.0	50.0	0.0	.	207	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78579428	78579428	+	Missense_Mutation	SNP	C	C	A	rs201844408	alternate_allele	TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	NAV3	NM_014903	exon30	c.C5674A	p.R1892S	GATGGCCGCAGTG	.	239.0	155.0	50.0	0.0	.	506	.	.	Atlas-SNP
PLEKHG7	440107	hgsc.bcm.edu	hg19	12	93147989	93147989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PLEKHG7	NM_001004330	exon6	c.G439A	p.A147T	GACTCTGCTGAGA	.	224.0	47.0	67.0	0.0	.	38	.	.	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109853348	109853348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	MYO1H	NM_001101421	exon14	c.C1472T	p.P491L	CTGGTCCAAAGGG	.	144.0	53.0	43.0	0.0	.	98	.	.	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	hg19	13	37679130	37679130	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CSNK1A1L	NM_145203	exon1	c.A264G	p.L88L	CATGACTAGCACA	.	118.0	47.0	75.0	0.0	.	69	.	.	Atlas-SNP
SLAIN1	122060	hgsc.bcm.edu	hg19	13	78320728	78320728	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SLAIN1	NM_001242868	exon4	c.A996G	p.K332K	AAAAAAAGGGACA	.	115.0	5.0	72.0	0.0	.	43	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109792761	109792761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	MYO16,lower_third,carcinoma,0,1	MYO16	NM_001198950	exon32	c.G4201T	p.A1401S	GCGGGCGCCCCGG	.	50.0	17.0	79.0	0.0	.	285	.	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	hg19	14	59730340	59730340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	DAAM1	NM_001270520	exon2	c.C145T	p.P49S	ATGCCCCCTGTGG	.	123.0	56.0	135.0	0.0	.	95	.	.	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63473124	63473124	+	Silent	SNP	G	G	A	rs373008977		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	KCNH5	NM_172375	exon3	c.C264T	p.Y88Y	TGATTCGTAGTTG	.	62.0	19.0	50.0	0.0	.	320	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41796631	41796631	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	LTK	NM_002344	exon20	c.2256-1G>C	.	CGGTACCTGGGGA	.	72.0	26.0	82.0	0.0	.	117	.	.	Atlas-SNP
SLC24A5	283652	hgsc.bcm.edu	hg19	15	48429129	48429129	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SLC24A5	NM_205850	exon6	c.A840C	p.I280I	CTCTATAAGTTTA	.	104.0	35.0	58.0	0.0	.	64	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48779389	48779389	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	FBN1	NM_000138	exon29	c.G3472T	p.E1158X	CACATTCATTGAT	.	76.0	30.0	65.0	0.0	.	310	.	.	Atlas-SNP
DPP8	54878	hgsc.bcm.edu	hg19	15	65759147	65759147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	DPP8	NM_197960	exon15	c.G1742C	p.C581S	AAGTCACAGTGCT	.	82.0	34.0	65.0	0.0	.	78	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73617688	73617688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	HCN4	NM_005477	exon5	c.T1688A	p.M563K	TCGAACATCTTGC	.	90.0	33.0	151.0	0.0	.	150	.	.	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	hg19	16	28506821	28506821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	APOBR	NM_018690	exon2	c.C459A	p.S153R	CAGGAGCGGCCAA	.	266.0	106.0	399.0	0.0	.	89	.	.	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	hg19	17	10443978	10443978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	MYH2	NM_017534	exon11	c.C941G	p.P314R	ACAAATGGGTAAT	.	40.0	33.0	82.0	0.0	.	390	.	.	Atlas-SNP
SLC13A2	9058	hgsc.bcm.edu	hg19	17	26822770	26822770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SLC13A2	NM_001145975	exon10	c.C1553T	p.T518I	TGGCCACCTTCAC	.	34.0	8.0	39.0	0.0	.	125	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	67023238	67023238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ABCA9	NM_080283	exon15	c.A1929T	p.E643D	AGTCGGTTCATCC	.	96.0	12.0	41.0	0.0	.	192	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	7955137	7955137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	PTPRM	NM_001105244	exon7	c.C857T	p.A286V	CTATTGCCCCACC	.	100.0	28.0	94.0	0.0	.	185	.	.	Atlas-SNP
TWSG1	57045	hgsc.bcm.edu	hg19	18	9399524	9399524	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	TWSG1	NM_020648	exon5	c.A671T	p.X224L	TGTTTTAAAGAAG	.	52.0	18.0	61.0	0.0	.	23	.	.	Atlas-SNP
CHMP1B	57132	hgsc.bcm.edu	hg19	18	11851773	11851773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CHMP1B	NM_020412	exon1	c.T263C	p.V88A	GCAAGGTGACCAA	.	40.0	23.0	63.0	0.0	.	16	.	.	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1429964	1429964	+	Splice_Site	SNP	A	A	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	DAZAP1	NM_018959	exon9	c.701-2A>C	.	TTATCTAGGAATG	.	79.0	25.0	120.0	0.0	.	52	.	.	Atlas-SNP
ZNF493	284443	hgsc.bcm.edu	hg19	19	21606246	21606246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ZNF493	NM_001076678	exon4	c.A785G	p.Q262R	CTGGACAGAAACC	.	211.0	80.0	108.0	0.0	.	178	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38958307	38958307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	RYR1,acral,malignant_melanoma,0,1	RYR1	NM_001042723	exon25	c.C3236A	p.S1079Y	AGAAATCCTATAC	.	89.0	39.0	131.0	0.0	.	708	.	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33328358	33328358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	NCOA6	NM_014071	exon11	c.C5702G	p.A1901G	GGTCCTGCTGAGG	.	58.0	22.0	43.0	0.0	.	219	.	.	Atlas-SNP
SNRPD3	6634	hgsc.bcm.edu	hg19	22	24967931	24967931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SNRPD3	NM_004175	exon4	c.C367A	p.Q123K	ATCTTTCAAAAGC	.	189.0	79.0	225.0	0.0	.	12	.	.	Atlas-SNP
KLHDC7B	113730	hgsc.bcm.edu	hg19	22	50987118	50987118	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	KLHDC7B	NM_138433	exon1	c.A523T	p.K175X	ACGGAAAAGCAGG	.	55.0	45.0	103.0	0.0	.	39	.	.	Atlas-SNP
ASMT	438	hgsc.bcm.edu	hg19	X	1742043	1742043	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	ASMT	NM_001171039	exon2	c.C81T	p.A27A	CTTCGCCGCCTGC	.	129.0	112.0	213.0	0.0	.	31	.	.	Atlas-SNP
AP3M2	10947	hgsc.bcm.edu	hg19	8	42015551	42015558	+	Frame_Shift_Del	DEL	ATTGGCTA	ATTGGCTA	-	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	ATTGGCTA	ATTGGCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	AP3M2	NM_001134296	exon4	c.365_372del	p.122_124del	.	.	91.0	32.0	105.0	0.0	.	41	.	.	Atlas-Indel,Pindel
FAM114A1	92689	hgsc.bcm.edu	hg19	4	38933200	38933201	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	FAM114A1	NM_138389	exon11	c.1290_1291insA	p.D430fs	.	.	206.0	78.0	175.0	0.0	.	42	.	.	Atlas-Indel,Pindel
SRMS	6725	hgsc.bcm.edu	hg19	20	62178723	62178724	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	SRMS	NM_080823	exon1	c.94_95insC	p.G32fs	.	.	160.0	10.0	202.0	0.0	.	48	.	.	Atlas-INDEL
COL16A1	1307	hgsc.bcm.edu	hg19	1	32162681	32162682	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	COL16A1	NM_001856	exon8	c.747_748insC	p.P249fs	.	.	76.0	25.0	88.0	0.0	.	137	.	.	Atlas-Indel,Pindel
CNTN2	6900	hgsc.bcm.edu	hg19	1	205027137	205027137	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H0-01A-11D-A382-10	TCGA-2Y-A9H0-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	87054fed-dd7d-4c27-af8f-4a559cca7800	d7df8ad9-70a5-4728-874c-8a1cf595ed35	.	CNTN2	NM_005076	exon3	c.158delC	p.T53fs	.	.	260.0	173.0	210.0	0.0	.	116	.	.	Atlas-Indel,Pindel
