Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PIAS3	10401	hgsc.bcm.edu	hg19	1	145578670	145578670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	PIAS3	NM_006099	exon3	c.A476G	p.H159R	AAGCGCACTTTAC	.	123.0	13.0	142.0	0.0	.	96	.	.	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	hg19	1	248224048	248224048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	OR2L3	NM_001004687	exon1	c.T65C	p.I22T	CAAGAATTGGCCT	.	124.0	50.0	145.0	0.0	.	97	.	.	Atlas-SNP
NTSR2	23620	hgsc.bcm.edu	hg19	2	11798629	11798629	+	Silent	SNP	C	C	T	rs150650740		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	NTSR2	NM_012344	exon4	c.G1209A	p.G403G	GGGATCCCCAAAG	.	125.0	37.0	96.0	0.0	.	36	.	C|1.000;T|0.000	Atlas-SNP
NTSR2	23620	hgsc.bcm.edu	hg19	2	11810006	11810006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	NTSR2	NM_012344	exon1	c.C250G	p.L84V	CGACCAGCAGCAG	.	70.0	4.0	66.0	0.0	.	36	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	hg19	2	108488174	108488174	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	RGPD4	NM_182588	exon20	c.C3714A	p.P1238P	AAAACCCAATCCT	.	158.0	104.0	233.0	0.0	.	112	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210777350	210777350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	UNC80	NM_032504	exon29	c.G4651A	p.G1551R	CTGGAAGGAAAAA	.	84.0	29.0	95.0	0.0	.	280	.	.	Atlas-SNP
KLHL40	131377	hgsc.bcm.edu	hg19	3	42727774	42727774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	KBTBD5,NS,carcinoma,0,1	.	NM_152393	exon1	c.G664A	p.E222K	GTCTTCGAGAGCG	.	64.0	32.0	78.0	0.0	.	.	.	.	Atlas-SNP
CISH	1154	hgsc.bcm.edu	hg19	3	50649061	50649061	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	CISH	NM_145071	exon2	c.20+1G>A	.	CGCTTACCCCTGA	.	190.0	60.0	275.0	0.0	.	27	.	.	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	hg19	3	148858010	148858010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	HPS3	NM_032383	exon2	c.G437A	p.G146E	TGAAAGGAGACCT	.	213.0	94.0	159.0	0.0	.	104	.	.	Atlas-SNP
LIPH	200879	hgsc.bcm.edu	hg19	3	185234915	185234915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	LIPH	NM_139248	exon7	c.G922T	p.G308W	CTTTCCCCCTTAG	.	104.0	40.0	129.0	0.0	.	56	.	.	Atlas-SNP
HS3ST1	9957	hgsc.bcm.edu	hg19	4	11401383	11401383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	HS3ST1	NM_005114	exon2	c.G247T	p.A83S	TCTCCGCGGCCGC	.	67.0	25.0	79.0	0.0	.	41	.	.	Atlas-SNP
NFXL1	152518	hgsc.bcm.edu	hg19	4	47907301	47907301	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	NFXL1	NM_152995	exon4	c.G469C	p.A157P	TCATAGCCCCTGC	.	88.0	4.0	88.0	0.0	.	79	.	.	Atlas-SNP
INTU	27152	hgsc.bcm.edu	hg19	4	128625436	128625436	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	INTU	NM_015693	exon10	c.A1557G	p.L519L	TTCTCTATTTTAC	.	128.0	8.0	89.0	0.0	.	92	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155507053	155507053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	FGA	NM_000508	exon5	c.C1528T	p.R510C	TATGGCGGAACCC	.	76.0	31.0	70.0	0.0	.	179	.	.	Atlas-SNP
PLCXD3	345557	hgsc.bcm.edu	hg19	5	41382054	41382054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	PLCXD3	NM_001005473	exon2	c.T686C	p.L229P	GCTTGAAGAAACT	.	132.0	42.0	82.0	0.0	.	86	.	.	Atlas-SNP
CHSY3	337876	hgsc.bcm.edu	hg19	5	129240619	129240619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	CHSY3	NM_175856	exon1	c.G97A	p.E33K	GTGGCGGAGCTGA	.	39.0	11.0	57.0	0.0	.	92	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130769233	130769233	+	Silent	SNP	T	T	C	rs373104489		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	RAPGEF6	NM_001164387	exon27	c.A3903G	p.L1301L	ATCCTGTAGAGCT	.	137.0	69.0	134.0	0.0	.	361	.	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	hg19	5	140257029	140257029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	PCDHA12	NM_018903	exon1	c.G1972A	p.A658T	GAGCCCGCGCTGA	.	195.0	102.0	185.0	0.0	.	196	.	.	Atlas-SNP
CLK4	57396	hgsc.bcm.edu	hg19	5	178040819	178040819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	CLK4_ENST00000316308,NS,carcinoma,0,2	CLK4	NM_020666	exon6	c.A568C	p.I190L	TTACGATTTTCAC	.	129.0	81.0	129.0	0.0	.	103	.	.	Atlas-SNP
TRIM7	81786	hgsc.bcm.edu	hg19	5	180622567	180622567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	TRIM7	NM_203293	exon7	c.C1135T	p.R379C	CGAAGCGGCAGGG	.	160.0	7.0	166.0	0.0	.	56	.	.	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31736935	31736935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	.	NM_025258	exon10	c.G1363A	p.A455T	GCCGAGCTCGACC	.	54.0	19.0	74.0	0.0	.	.	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46658262	46658262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	TDRD6	NM_001168359	exon1	c.A2397C	p.K799N	ACTTAAAACTCTA	.	140.0	65.0	149.0	0.0	.	205	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12410068	12410068	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	VWDE	NM_001135924	exon12	c.T1864G	p.Y622D	TACAATAGGATGG	.	23.0	11.0	22.0	0.0	.	123	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100685401	100685401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	MUC17	NM_001040105	exon3	c.G10704T	p.M3568I	GCGTATGTCTACT	.	81.0	40.0	89.0	0.0	.	804	.	.	Atlas-SNP
AGBL3	340351	hgsc.bcm.edu	hg19	7	134719306	134719306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	AGBL3	NM_178563	exon7	c.T964G	p.F322V	TCAAAGTTTTGTA	.	108.0	47.0	98.0	0.0	.	45	.	.	Atlas-SNP
SNX16	64089	hgsc.bcm.edu	hg19	8	82752214	82752214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SNX16	NM_152836	exon2	c.C8A	p.T3N	TAAGGAGTTGCCA	.	37.0	11.0	50.0	0.0	.	21	.	.	Atlas-SNP
GPIHBP1	338328	hgsc.bcm.edu	hg19	8	144297217	144297217	+	Missense_Mutation	SNP	A	A	T	rs369222108	alternate_allele	TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	GPIHBP1	NM_178172	exon4	c.A379T	p.T127S	CAGGTGACCATGA	.	114.0	61.0	104.0	0.0	.	12	.	.	Atlas-SNP
GNA14	9630	hgsc.bcm.edu	hg19	9	80144021	80144021	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	GNA14	NM_004297	exon2	c.C273T	p.D91D	TAGCGTGTCCATC	.	117.0	34.0	128.0	0.0	.	50	.	.	Atlas-SNP
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu	hg19	9	103278965	103278965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	.	NM_001198812	exon5	c.G694A	p.G232R	GAGGAAGGGTCAG	.	101.0	32.0	133.0	0.0	.	.	.	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	119097256	119097256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	PAPPA	NM_002581	exon13	c.G3514A	p.A1172T	CTGGTCGCCATCT	.	72.0	24.0	98.0	0.0	.	243	.	.	Atlas-SNP
SLC22A18AS	5003	hgsc.bcm.edu	hg19	11	2920711	2920711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SLC22A18AS	NM_007105	exon3	c.G221C	p.G74A	CTTCCTCCAGTCA	.	101.0	18.0	89.0	0.0	.	7	.	.	Atlas-SNP
PRRG4	79056	hgsc.bcm.edu	hg19	11	32875007	32875007	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	PRRG4	NM_024081	exon6	c.A615G	p.P205P	ACCACCACCATAT	.	97.0	41.0	122.0	0.0	.	15	.	.	Atlas-SNP
OR4S2	219431	hgsc.bcm.edu	hg19	11	55419121	55419121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	OR4S2	NM_001004059	exon1	c.T742C	p.F248L	GTTATCTTTTTCG	.	124.0	43.0	81.0	0.0	.	89	.	.	Atlas-SNP
RELA	5970	hgsc.bcm.edu	hg19	11	65422301	65422301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	RELA	NM_021975	exon11	c.G1204T	p.A402S	CCAGAGCTGATAC	.	108.0	41.0	153.0	0.0	.	44	.	.	Atlas-SNP
OAF	220323	hgsc.bcm.edu	hg19	11	120082155	120082155	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	OAF	NM_178507	exon1	c.C168T	p.S56S	GGACAGCATCAGC	.	106.0	41.0	155.0	0.0	.	12	.	.	Atlas-SNP
OR6X1	390260	hgsc.bcm.edu	hg19	11	123624701	123624701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	OR6X1,NS,malignant_melanoma,0,1	OR6X1	NM_001005188	exon1	c.T526C	p.Y176H	CACAGTAGAAATG	.	70.0	25.0	79.0	0.0	.	54	.	.	Atlas-SNP
OR8D4	338662	hgsc.bcm.edu	hg19	11	123777184	123777184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	OR8D4	NM_001005197	exon1	c.G46A	p.G16R	CTTTCAGGATTAA	.	56.0	22.0	55.0	0.0	.	62	.	.	Atlas-SNP
GUCY2C	2984	hgsc.bcm.edu	hg19	12	14839106	14839106	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	GUCY2C	NM_004963	exon3	c.C384T	p.T128T	CTGGAAGGTGGAG	.	67.0	28.0	83.0	0.0	.	126	.	.	Atlas-SNP
ASUN	55726	hgsc.bcm.edu	hg19	12	27059306	27059306	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	.	NM_018164	exon16	c.G2010A	p.Q670Q	AAATTCCTGATGT	.	93.0	10.0	98.0	0.0	.	.	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43858526	43858526	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	ADAMTS20	NM_025003	exon10	c.C1377A	p.Y459X	TTCCCCGTAACCA	.	58.0	29.0	56.0	0.0	.	635	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43858528	43858528	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	ADAMTS20	NM_025003	exon10	c.T1375A	p.Y459N	CCCCGTAACCAGT	.	57.0	28.0	57.0	0.0	.	635	.	.	Atlas-SNP
SELPLG	6404	hgsc.bcm.edu	hg19	12	109017847	109017847	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SELPLG	NM_001206609	exon2	c.G285A	p.E95E	GGTAGACTCAGGG	.	83.0	29.0	133.0	0.0	.	138	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23910913	23910913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SACS	NM_014363	exon10	c.G7102T	p.A2368S	ATGGTGCCGCCTC	.	93.0	42.0	82.0	0.0	.	871	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35632969	35632969	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	NBEA	NM_015678	exon8	c.T1208G	p.F403C	AGATATTTGCAAT	.	345.0	134.0	295.0	1.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36180583	36180583	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	NBEA	NM_015678	exon48	c.C7317T	p.Y2439Y	GTTCTACTACCTA	.	108.0	41.0	107.0	0.0	.	340	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103402336	103402336	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	.	NM_001146197	exon4	c.C711T	p.A237A	TAAGTGGGCAAGA	.	69.0	11.0	60.0	0.0	.	.	.	.	Atlas-SNP
SAMD4A	23034	hgsc.bcm.edu	hg19	14	55034783	55034783	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SAMD4A	NM_015589	exon1	c.C149G	p.A50G	CGCTGGCCGACTG	.	13.0	5.0	23.0	0.0	.	68	.	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	hg19	14	59835462	59835462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	DAAM1	NM_014992	exon25	c.G3122A	p.R1041H	CTTTACGCTCAGG	.	166.0	65.0	146.0	0.0	.	95	.	.	Atlas-SNP
VRTN	55237	hgsc.bcm.edu	hg19	14	74823991	74823991	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	VRTN	NM_018228	exon2	c.A505T	p.S169C	CCCAGCAGCTTCT	.	23.0	15.0	39.0	0.0	.	79	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33765670	33765670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	RYR3	NM_001243996	exon2	c.G102T	p.R34S	GCAGAGGAAGTTC	.	56.0	16.0	47.0	0.0	.	760	.	.	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40259627	40259627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	EIF2AK4	NM_001013703	exon9	c.A1100G	p.K367R	ATCTCAAAGAGCA	.	170.0	36.0	177.0	0.0	.	107	.	.	Atlas-SNP
SPESP1	246777	hgsc.bcm.edu	hg19	15	69238044	69238044	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SPESP1	NM_145658	exon2	c.A171G	p.K57K	GAAAAAATCTAAC	.	212.0	84.0	213.0	0.0	.	39	.	.	Atlas-SNP
RHBDL1	9028	hgsc.bcm.edu	hg19	16	727559	727559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	RHBDL1	NM_003961	exon5	c.G984T	p.M328I	TGTCATGGTAACG	.	40.0	16.0	46.0	0.0	.	14	.	.	Atlas-SNP
OTOA	146183	hgsc.bcm.edu	hg19	16	21739616	21739616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	OTOA	NM_144672	exon19	c.C2071T	p.H691Y	CTGTGTCACTTGC	.	72.0	23.0	97.0	0.0	.	144	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38186019	38186019	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	MED24	NM_014815	exon13	c.T1248C	p.T416T	TGTGACAGTGGGC	.	66.0	30.0	86.0	0.0	.	89	.	.	Atlas-SNP
RNMT	8731	hgsc.bcm.edu	hg19	18	13741655	13741655	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	RNMT	NM_003799	exon7	c.T939A	p.Y313X	GGGCTATTTTATT	.	82.0	30.0	104.0	0.0	.	42	.	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	hg19	18	70461395	70461395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	NETO1	NM_001201465	exon6	c.C596A	p.A199D	TCAACAGCCTCGC	.	200.0	38.0	158.0	0.0	.	178	.	.	Atlas-SNP
TJP3	27134	hgsc.bcm.edu	hg19	19	3728689	3728689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	TJP3	NM_001267561	exon3	c.G163A	p.G55R	CCTGGAGGGCCGG	.	81.0	34.0	93.0	0.0	.	79	.	.	Atlas-SNP
OR7A5	26659	hgsc.bcm.edu	hg19	19	14938215	14938215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	OR7A5	NM_017506	exon1	c.T839A	p.V280E	GTGACCACAGTGT	.	58.0	29.0	91.0	0.0	.	43	.	.	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	hg19	20	1616060	1616060	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	SIRPG	NM_018556	exon4	c.A934T	p.S312C	ACCAGCTTGTCCA	.	155.0	54.0	206.0	0.0	.	61	.	.	Atlas-SNP
TAF4	6874	hgsc.bcm.edu	hg19	20	60639513	60639513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	TAF4	NM_003185	exon1	c.C1354T	p.P452S	CTGGGGGCAGCTG	.	68.0	16.0	71.0	0.0	.	84	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38538061	38538061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	TTC3	NM_001001894	exon33	c.G3545A	p.R1182K	AAAAAAGGAAGAA	.	70.0	31.0	62.0	0.0	.	182	.	.	Atlas-SNP
TNMD	64102	hgsc.bcm.edu	hg19	X	99854661	99854661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	TNMD	NM_022144	exon7	c.C901T	p.R301C	ATCTGTCGTGTCA	.	99.0	87.0	72.0	0.0	.	40	.	.	Atlas-SNP
GPRASP1	9737	hgsc.bcm.edu	hg19	X	101909785	101909785	+	Missense_Mutation	SNP	C	C	T	rs17339512	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	GPRASP1	NM_001099411	exon3	c.C944T	p.A315V	AGGAGGCCAAATT	.	86.0	4.0	57.0	0.0	.	140	.	C|0.962;G|0.038	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	hg19	X	107978096	107978096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	IRS4	NM_003604	exon1	c.G1479T	p.W493C	TGAGCCCCAATTG	.	116.0	55.0	70.0	0.0	.	253	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128320011	128320012	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	PTPRK	NM_001135648	exon16	c.2533_2534insT	p.L845fs	.	.	106.0	36.0	65.0	0.0	.	330	.	.	Atlas-Indel,Pindel
ST8SIA6	338596	hgsc.bcm.edu	hg19	10	17363249	17363249	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	ST8SIA6	NM_001004470	exon8	c.826delA	p.N276fs	.	.	206.0	30.0	220.0	0.0	.	85	.	.	Atlas-Indel,Pindel
UPF3B	65109	hgsc.bcm.edu	hg19	X	118975219	118975222	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	UPF3B	NM_023010	exon7	c.625_628del	p.209_210del	.	.	38.0	30.0	26.0	0.0	.	74	.	.	Atlas-Indel,Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7579420	7579420	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	TP53_ENST00000455263,NS,carcinoma,0,1	TP53	NM_001126112	exon4	c.268delT	p.S90fs	.	.	105.0	62.0	168.0	0.0	.	33396	.	.	Atlas-Indel,Pindel
USP34	9736	hgsc.bcm.edu	hg19	2	61597513	61597514	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	USP34	NM_014709	exon10	c.1194_1195insT	p.L398fs	.	.	354.0	118.0	333.0	0.0	.	334	.	.	Atlas-Indel,Pindel
DNAJC14	85406	hgsc.bcm.edu	hg19	12	56222310	56222310	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	DNAJC14	NM_032364	exon2	c.134delC	p.T45fs	.	.	142.0	51.0	163.0	0.0	.	52	.	.	Atlas-Indel,Pindel
HNRNPA1	3178	hgsc.bcm.edu	hg19	12	54675175	54675176	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	HNRNPA1	NM_002136	exon2	c.21_22insA	p.P7fs	.	.	77.0	21.0	94.0	0.0	.	72	.	.	Pindel
FLT4	2324	hgsc.bcm.edu	hg19	5	180041181	180041214	+	Splice_Site	DEL	TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA	TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA	-	novel		TCGA-2Y-A9H4-01A-11D-A382-10	TCGA-2Y-A9H4-10A-01D-A385-10	TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA	TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a12a5c70-7c82-4f2b-972f-81a029234685	cc2a8833-5e36-487f-bcb8-1fcb198152ff	.	FLT4	.	.	.	.	.	.	96.0	14.0	93.0	0.0	.	356	.	.	Pindel
