Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FHAD1	114827	hgsc.bcm.edu	hg19	1	15707915	15707915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	FHAD1	NM_052929	exon29	c.G3924T	p.L1308F	GCTGTTGAGAGGA	.	105.0	53.0	170.0	0.0	.	78	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16257447	16257447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	SPEN	NM_015001	exon11	c.G4712T	p.S1571I	CAAACAGCACAAC	.	109.0	5.0	197.0	0.0	.	374	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	33999415	33999415	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CSMD2	NM_052896	exon62	c.A9540G	p.G3180G	TGGGGTTCCACTC	.	78.0	43.0	125.0	0.0	.	946	.	.	Atlas-SNP
CYP4B1	1580	hgsc.bcm.edu	hg19	1	47276518	47276518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CYP4B1	NM_000779	exon2	c.G219T	p.W73C	GTCCTGGGCCCAC	.	57.0	32.0	63.0	0.0	.	81	.	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157504613	157504613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	FCRL5	NM_031281	exon8	c.C1472T	p.T491I	TGAAGTGTCACAG	.	223.0	125.0	93.0	0.0	.	177	.	.	Atlas-SNP
POGK	57645	hgsc.bcm.edu	hg19	1	166818813	166818813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	POGK	NM_017542	exon5	c.G997A	p.E333K	CTGCCGGAAGACC	.	111.0	55.0	95.0	0.0	.	54	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237532889	237532889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	RYR2,colon,carcinoma,+1,1	RYR2	NM_001035	exon6	c.G365A	p.R122H	TGCTGCGCCATTC	.	141.0	13.0	70.0	0.0	.	1273	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247007207	247007207	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	AHCTF1	NM_015446	exon34	c.C6442T	p.Q2148X	TCAGCTGTGCAGG	.	689.0	161.0	434.0	0.0	.	187	.	.	Atlas-SNP
SLC1A4	6509	hgsc.bcm.edu	hg19	2	65248223	65248223	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	SLC1A4	NM_003038	exon8	c.C1542T	p.N514N	CCAGAACCCCGCT	.	187.0	11.0	205.0	0.0	.	33	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141457818	141457818	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LRP1B	NM_018557	exon42	c.6799+1G>A	.	TACTTACTTTCAA	.	73.0	37.0	46.0	0.0	.	1315	.	.	Atlas-SNP
NEUROD1	4760	hgsc.bcm.edu	hg19	2	182543445	182543445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NEUROD1	NM_002500	exon2	c.C143T	p.A48V	TCCTCTGCGTTCA	.	67.0	31.0	75.0	0.0	.	67	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	232880381	232880381	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	DIS3L2	NM_001257282	exon3	c.G210A	p.Q70Q	CATCCAGGTGCTT	.	68.0	31.0	25.0	0.0	.	77	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78706267	78706267	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ROBO1	NM_002941	exon18	c.G2595A	p.E865E	CTGAGGCTCACTC	.	61.0	25.0	65.0	0.0	.	833	.	.	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	hg19	4	52861214	52861214	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LRRC66	NM_001024611	exon4	c.C1974T	p.Y658Y	GTCACCGTATGGA	.	44.0	21.0	35.0	0.0	.	128	.	.	Atlas-SNP
PAQR3	152559	hgsc.bcm.edu	hg19	4	79851430	79851430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	PAQR3	NM_001040202	exon3	c.C398T	p.S133L	TTTTCTGACCGAT	.	114.0	42.0	57.0	0.0	.	28	.	.	Atlas-SNP
SEC31A	22872	hgsc.bcm.edu	hg19	4	83800020	83800020	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	SEC31A_ENST00000432794,right_upper_lobe,carcinoma,0,2	SEC31A	NM_001077206	exon4	c.C265T	p.L89L	CAATCAGAACTCC	.	341.0	127.0	285.0	1.0	.	227	.	.	Atlas-SNP
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84502954	84502954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	AGPAT9	NM_001256421	exon4	c.A448T	p.I150L	GGCGTCATAGTGC	.	118.0	42.0	89.0	0.0	.	41	.	.	Atlas-SNP
NDST3	9348	hgsc.bcm.edu	hg19	4	119161760	119161760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NDST3	NM_004784	exon11	c.G2200A	p.E734K	CCCTCGGAGCTCA	.	122.0	46.0	65.0	0.0	.	107	.	.	Atlas-SNP
SLC10A7	84068	hgsc.bcm.edu	hg19	4	147431063	147431063	+	Splice_Site	SNP	A	A	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	SLC10A7	NM_001029998	exon4	c.320+2T>A	.	AAACATACCCTTT	.	128.0	51.0	113.0	0.0	.	32	.	.	Atlas-SNP
BRD9	65980	hgsc.bcm.edu	hg19	5	887508	887508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	BRD9	NM_023924	exon6	c.A685T	p.I229F	GAAGGATCTTCTT	.	73.0	17.0	72.0	0.0	.	113	.	.	Atlas-SNP
EMB	133418	hgsc.bcm.edu	hg19	5	49695712	49695712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	EMB	NM_198449	exon8	c.T947C	p.V316A	CTGGGGACATTAT	.	416.0	129.0	227.0	0.0	.	42	.	.	Atlas-SNP
SRFBP1	153443	hgsc.bcm.edu	hg19	5	121355923	121355923	+	Missense_Mutation	SNP	A	A	G	rs374380607		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	SRFBP1	NM_152546	exon6	c.A493G	p.I165V	ACTGTCATCAGTG	.	181.0	56.0	132.0	0.0	.	47	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135692906	135692906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	TRPC7	NM_001167576	exon2	c.C170T	p.P57L	ACCACCGGGATGT	.	79.0	24.0	67.0	0.0	.	126	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141324975	141324975	+	Missense_Mutation	SNP	C	C	T	rs3833449	bycluster	TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	PCDH12	NM_016580	exon4	c.G3526A	p.G1176S	TGCTGCCTCTGCT	.	72.0	10.0	95.0	0.0	.	133	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141324976	141324976	+	Missense_Mutation	SNP	T	T	G	rs13188049	bycluster	TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	PCDH12	NM_016580	exon4	c.A3525C	p.R1175S	GCTGCCTCTGCTC	.	72.0	9.0	100.0	0.0	.	133	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7585481	7585481	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	DSP	NM_004415	exon24	c.C7986T	p.H2662H	CATCCACCCAACC	.	249.0	65.0	144.0	0.0	.	306	.	.	Atlas-SNP
HIST1H3F	8968	hgsc.bcm.edu	hg19	6	26250518	26250518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	HIST1H3F	NM_021018	exon1	c.G316A	p.E106K	TGTCCTCAAAGAG	.	149.0	7.0	125.0	0.0	.	16	.	.	Atlas-SNP
OR11A1	26531	hgsc.bcm.edu	hg19	6	29394996	29394996	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	OR11A1	NM_013937	exon1	c.G423T	p.R141R	CATGTACCGTCTG	.	120.0	35.0	66.0	0.0	.	30	.	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39824089	39824089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	DAAM2,rectum,NS,0,1	DAAM2	NM_015345	exon2	c.G11A	p.R4H	CCCCCCGCAAGAG	.	114.0	5.0	88.0	0.0	.	101	.	.	Atlas-SNP
GFRAL	389400	hgsc.bcm.edu	hg19	6	55264182	55264182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	GFRAL	NM_207410	exon8	c.C1064T	p.A355V	TCTATGCTGCCAT	.	316.0	91.0	167.0	0.0	.	91	.	.	Atlas-SNP
MALSU1	115416	hgsc.bcm.edu	hg19	7	23338995	23338995	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	.	NM_138446	exon1	c.G24A	p.A8A	TGTGGCGCGGCTG	.	104.0	9.0	89.0	0.0	.	.	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107875102	107875102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NRCAM	NM_001037132	exon3	c.C155A	p.S52Y	TTTGGAGACTGTT	.	97.0	25.0	62.0	0.0	.	267	.	.	Atlas-SNP
AGPAT5	55326	hgsc.bcm.edu	hg19	8	6566226	6566226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	AGPAT5	NM_018361	exon1	c.C37T	p.R13C	TCCATGCGCTACC	.	22.0	7.0	39.0	0.0	.	31	.	.	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	32600258	32600258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NRG1	NM_013962	exon5	c.C1241A	p.S414Y	GTACGTCCACTCC	.	50.0	22.0	44.0	0.0	.	260	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68965476	68965476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	PREX2_ENST00000354677,NS,carcinoma,0,6	PREX2	NM_025170	exon9	c.G1088A	p.R363Q	AACGGCGGAAAGG	.	246.0	62.0	112.0	0.0	.	614	.	.	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105360974	105360974	+	Missense_Mutation	SNP	G	G	T	rs149253106	alternate_allele	TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	.	NM_001257317	exon2	c.G194T	p.W65L	CCTCCTGGATTAT	.	128.0	18.0	65.0	0.0	.	.	.	G|1.000;A|0.000	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	hg19	8	124659239	124659239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	KLHL38,NS,carcinoma,0,1	KLHL38	NM_001081675	exon2	c.A1366G	p.R456G	AGTTTCTGGAAAT	.	167.0	75.0	115.0	0.0	.	81	.	.	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	hg19	9	74327050	74327050	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	TMEM2	NM_013390	exon16	c.C2718G	p.S906S	CTGCCAGGAATTC	.	105.0	36.0	99.0	0.0	.	112	.	.	Atlas-SNP
TLE1	7088	hgsc.bcm.edu	hg19	9	84202721	84202721	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	TLE1,NS,carcinoma,0,2	TLE1	NM_005077	exon17	c.G1852T	p.G618X	TGGCTCCGTCTGT	.	61.0	29.0	72.0	0.0	.	81	.	.	Atlas-SNP
FGD3	89846	hgsc.bcm.edu	hg19	9	95797700	95797700	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	FGD3	NM_001083536	exon18	c.G2007T	p.G669G	CTCGGGGCATGTG	.	81.0	37.0	168.0	0.0	.	116	.	.	Atlas-SNP
NEK6	10783	hgsc.bcm.edu	hg19	9	127074820	127074820	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NEK6	NM_001166171	exon4	c.G225A	p.S75S	CTGCTCGCTGGCG	.	43.0	10.0	92.0	0.0	.	47	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	141016411	141016411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CACNA1B	NM_000718	exon46	c.G6980A	p.R2327Q	GAGCACGGCACAG	.	19.0	10.0	42.0	0.0	.	266	.	.	Atlas-SNP
CUL2	8453	hgsc.bcm.edu	hg19	10	35320492	35320492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CUL2	NM_001198778	exon13	c.A1283G	p.N428S	ACTTCATTCTCTG	.	107.0	33.0	103.0	0.0	.	63	.	.	Atlas-SNP
NODAL	4838	hgsc.bcm.edu	hg19	10	72195410	72195410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NODAL	NM_018055	exon2	c.A523G	p.R175G	CTACCCTGGACAT	.	133.0	39.0	140.0	0.0	.	32	.	.	Atlas-SNP
NKX2-3	159296	hgsc.bcm.edu	hg19	10	101295220	101295220	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NKX2-3	NM_145285	exon2	c.C837A	p.A279A	CGCCGCCGCCGCC	.	34.0	5.0	32.0	0.0	.	11	.	.	Atlas-SNP
RBM20	282996	hgsc.bcm.edu	hg19	10	112404251	112404251	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	RBM20	NM_001134363	exon1	c.C39T	p.P13P	GGACCCCAGCGGT	.	1138.0	379.0	1078.0	0.0	.	50	.	.	Atlas-SNP
OR51F2	119694	hgsc.bcm.edu	hg19	11	4842843	4842843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	OR51F2	NM_001004753	exon1	c.C228G	p.F76L	CTATTTCCTCTCT	.	129.0	41.0	58.0	0.0	.	72	.	.	Atlas-SNP
LDHC	3948	hgsc.bcm.edu	hg19	11	18467772	18467772	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LDHC	NM_002301	exon7	c.C726T	p.I242I	AATTATCAAGCTG	.	92.0	35.0	103.0	0.0	.	37	.	.	Atlas-SNP
PAMR1	25891	hgsc.bcm.edu	hg19	11	35456179	35456179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	PAMR1	NM_015430	exon11	c.G1558A	p.A520T	AGTGGGCAGCCAC	.	119.0	45.0	96.0	0.0	.	85	.	.	Atlas-SNP
KCNA1	3736	hgsc.bcm.edu	hg19	12	5021467	5021467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	KCNA1	NM_000217	exon2	c.A923T	p.H308L	CCCGCCACTCTAA	.	81.0	15.0	85.0	0.0	.	112	.	.	Atlas-SNP
CLEC7A	64581	hgsc.bcm.edu	hg19	12	10279240	10279240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CLEC7A	NM_197947	exon3	c.G270T	p.E90D	GTGGTTCTCTTTA	.	105.0	30.0	110.0	0.0	.	55	.	.	Atlas-SNP
DERA	51071	hgsc.bcm.edu	hg19	12	16109926	16109926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	DERA	NM_015954	exon2	c.G88A	p.E30K	CGTGCGGAACAAA	.	134.0	48.0	94.0	0.0	.	20	.	.	Atlas-SNP
RACGAP1	29127	hgsc.bcm.edu	hg19	12	50386074	50386074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	RACGAP1	NM_013277	exon16	c.A1532G	p.N511S	TCTGGATTGGGCA	.	100.0	32.0	65.0	0.0	.	36	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57605033	57605033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LRP1	NM_002332	exon84	c.A12991T	p.T4331S	CGCTGCACTGCCT	.	81.0	26.0	76.0	0.0	.	428	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130184653	130184653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	TMEM132D,NS,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.G670A	p.V224M	GCTCCACGGGGGT	.	89.0	28.0	73.0	0.0	.	299	.	.	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	hg19	13	39587824	39587824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	.	NM_025138	exon11	c.C1565T	p.S522L	ATGGCTGATGGGG	.	93.0	34.0	110.0	0.0	.	.	.	.	Atlas-SNP
LHFP	10186	hgsc.bcm.edu	hg19	13	39952662	39952662	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LHFP	NM_005780	exon3	c.C387G	p.G129G	CAACAAGCCTGCA	.	58.0	28.0	51.0	0.0	.	31	.	.	Atlas-SNP
GZMB	3002	hgsc.bcm.edu	hg19	14	25102229	25102229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	GZMB	NM_004131	exon2	c.G95A	p.R32H	TAGGGGCGGGAGT	.	82.0	32.0	63.0	0.0	.	73	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94046579	94046579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	UNC79	NM_020818	exon19	c.C1987A	p.Q663K	GTCTTCCAAGCCC	.	117.0	6.0	103.0	0.0	.	366	.	.	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	hg19	15	22940832	22940832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CYFIP1	NM_014608	exon11	c.A1097G	p.Y366C	CGCGCTACAGCAA	.	192.0	56.0	210.0	0.0	.	159	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48736756	48736756	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	FBN1	NM_000138	exon49	c.C6019T	p.Q2007X	CATTTTGAAGACT	.	95.0	12.0	33.0	0.0	.	310	.	.	Atlas-SNP
FANCI	55215	hgsc.bcm.edu	hg19	15	89826381	89826381	+	Missense_Mutation	SNP	G	G	A	rs368127142		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	FANCI	NM_001113378	exon17	c.G1598A	p.R533Q	ATGCCCGAAAATC	.	68.0	27.0	63.0	0.0	.	129	.	.	Atlas-SNP
ZNF18	7566	hgsc.bcm.edu	hg19	17	11881727	11881727	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ZNF18	NM_144680	exon9	c.A1197C	p.P399P	GGCTCTTGGCTGC	.	100.0	27.0	61.0	0.0	.	42	.	.	Atlas-SNP
GIT1	28964	hgsc.bcm.edu	hg19	17	27903137	27903137	+	Missense_Mutation	SNP	C	C	T	rs374985717		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	GIT1	NM_001085454	exon16	c.G1651A	p.D551N	TGGCGTCGTCCTC	.	65.0	25.0	127.0	0.0	.	84	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48703836	48703836	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CACNA1G	NM_018896	exon38	c.C6858T	p.D2286D	CACAGACCCCTCT	.	144.0	29.0	216.0	0.0	.	659	.	.	Atlas-SNP
TBX2	6909	hgsc.bcm.edu	hg19	17	59482827	59482827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	TBX2	NM_005994	exon6	c.C1316T	p.A439V	AGGAGGCGGCCGA	.	93.0	12.0	123.0	0.0	.	30	.	.	Atlas-SNP
ATP8B1	5205	hgsc.bcm.edu	hg19	18	55315840	55315840	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ATP8B1	NM_005603	exon28	c.G3636A	p.S1212S	CTGGTGCGAGAAG	.	93.0	4.0	144.0	0.0	.	126	.	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	hg19	19	19757110	19757110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ATP13A1	NM_020410	exon23	c.A3152G	p.N1051S	TACAGGTTGAAGA	.	120.0	36.0	162.0	0.0	.	82	.	.	Atlas-SNP
CLASRP	11129	hgsc.bcm.edu	hg19	19	45570624	45570624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CLASRP	NM_007056	exon14	c.G1439A	p.R480K	GCTACAGGCGGGG	.	78.0	37.0	98.0	0.0	.	44	.	.	Atlas-SNP
LRRC4B	94030	hgsc.bcm.edu	hg19	19	51021449	51021449	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LRRC4B	NM_001080457	exon3	c.G1521T	p.R507R	CGTCCCCCGCGGC	.	35.0	12.0	50.0	0.0	.	89	.	.	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	hg19	20	50139906	50139906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	NFATC2	NM_012340	exon2	c.G874T	p.A292S	ACCCAGCCGGGGA	.	114.0	39.0	141.0	0.0	.	112	.	.	Atlas-SNP
DGCR14	8220	hgsc.bcm.edu	hg19	22	19126717	19126717	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	DGCR14	NM_022719	exon6	c.C777G	p.A259A	GCTCAGGGCTTGG	.	69.0	20.0	74.0	0.0	.	43	.	.	Atlas-SNP
HCCS	3052	hgsc.bcm.edu	hg19	X	11132958	11132958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	HCCS	NM_001122608	exon3	c.G104T	p.C35F	CAGGCTGTCCAGT	.	82.0	15.0	47.0	0.0	.	17	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32235037	32235037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	DMD	NM_004006	exon44	c.T6434A	p.L2145H	ACCTTAAGATACC	.	427.0	37.0	227.0	0.0	.	2127	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48678643	48678643	+	Missense_Mutation	SNP	G	G	T	rs186499554	bycluster;by1000genomes;alternate_allele	TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	HDAC6	NM_006044	exon23	c.G2318T	p.R773L	GTGGCCGCATTAT	.	93.0	25.0	105.0	0.0	.	111	.	G|0.999;A|0.001	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73963443	73963443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	KIAA2022	NM_001008537	exon3	c.T949G	p.F317V	CCTGAAAGGATTC	.	206.0	75.0	105.0	0.0	.	262	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123517915	123517915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	.	NM_001163278	exon30	c.A6866C	p.H2289P	TACAAATGAGTAA	.	140.0	64.0	74.0	0.0	.	.	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142718857	142718857	+	Missense_Mutation	SNP	G	G	A	rs376093373		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	SLITRK4	NM_001184750	exon2	c.C68T	p.S23L	TCCACCGATATGT	.	392.0	128.0	317.0	0.0	.	162	.	.	Atlas-SNP
SRPK3	26576	hgsc.bcm.edu	hg19	X	153049751	153049751	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	SRPK3	NM_014370	exon11	c.C1150G	p.P384A	CCAGCACCATTCG	.	213.0	69.0	280.0	0.0	.	63	.	.	Atlas-SNP
HOXB4	3214	hgsc.bcm.edu	hg19	17	46655285	46655285	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	HOXB4	NM_024015	exon1	c.398delA	p.H133fs	.	.	71.0	22.0	84.0	0.0	.	16	.	.	Atlas-Indel,Pindel
ACVR2A	92	hgsc.bcm.edu	hg19	2	148672850	148672853	+	Frame_Shift_Del	DEL	TGGA	TGGA	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	TGGA	TGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ACVR2A	NM_001616	exon5	c.618_621del	p.206_207del	.	.	160.0	72.0	102.0	0.0	.	125	.	.	Atlas-Indel,Pindel
CDH1	999	hgsc.bcm.edu	hg19	16	68867249	68867250	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	CDH1	NM_004360	exon16	c.2496_2497insT	p.V832fs	.	.	80.0	29.0	84.0	0.0	.	535	.	.	Atlas-Indel,Pindel
KLHDC7A	127707	hgsc.bcm.edu	hg19	1	18807799	18807799	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	KLHDC7A	NM_152375	exon1	c.323delC	p.T108fs	.	.	155.0	16.0	308.0	0.0	.	60	.	.	Atlas-Indel,Pindel
LARP1B	55132	hgsc.bcm.edu	hg19	4	128999019	128999019	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	LARP1B	NM_032239	exon4	c.118delA	p.S40fs	.	.	406.0	59.0	399.0	0.0	.	120	.	.	Atlas-Indel,Pindel
VPS37B	79720	hgsc.bcm.edu	hg19	12	123380577	123380585	+	In_Frame_Del	DEL	GGCGAACCG	GGCGAACCG	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	GGCGAACCG	GGCGAACCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	VPS37B	NM_024667	exon1	c.26_34del	p.9_12del	.	.	60.0	16.0	67.0	0.0	.	26	.	.	Atlas-Indel,Pindel
ELF3	1999	hgsc.bcm.edu	hg19	1	201981100	201981101	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ELF3	NM_004433	exon3	c.179_180insG	p.L60fs	.	.	200.0	92.0	189.0	0.0	.	92	.	.	Atlas-Indel,Pindel
ZNF800	168850	hgsc.bcm.edu	hg19	7	127014128	127014128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	ZNF800	NM_176814	exon5	c.1263delT	p.P421fs	.	.	173.0	42.0	99.0	0.0	.	78	.	.	Pindel
PEG10	23089	hgsc.bcm.edu	hg19	7	94293724	94293727	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-2Y-A9H5-01A-11D-A382-10	TCGA-2Y-A9H5-10A-01D-A385-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	10106872-3169-465f-900a-b6e74debfc51	978cf657-0928-40db-9f1c-888305de2cbb	.	PEG10	NM_001172438	exon2	c.1083_1086del	p.361_362del	.	.	142.0	29.0	163.0	0.0	.	36	.	.	Pindel
