Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRKCZ	5590	hgsc.bcm.edu	hg19	1	2106687	2106687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	PRKCZ	NM_002744	exon16	c.C1510T	p.R504W	GGCTGCCGGCCAC	.	88.0	41.0	108.0	0.0	.	84	.	.	Atlas-SNP
TMEM39B	55116	hgsc.bcm.edu	hg19	1	32557607	32557607	+	Missense_Mutation	SNP	G	G	A	rs202154275	bycluster	TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	TMEM39B	NM_018056	exon6	c.G922A	p.V308M	TGGTTCGTGAAGG	.	33.0	5.0	52.0	0.0	.	66	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62579830	62579830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	INADL	NM_176877	exon35	c.T4567G	p.Y1523D	GCACACTACCGGG	.	147.0	59.0	158.0	0.0	.	179	.	.	Atlas-SNP
MSH4	4438	hgsc.bcm.edu	hg19	1	76349304	76349304	+	Splice_Site	SNP	A	A	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	MSH4	NM_002440	exon15	c.1907-2A>C	.	TTCTTAAGTTCGA	.	126.0	28.0	90.0	0.0	.	147	.	.	Atlas-SNP
APCS	325	hgsc.bcm.edu	hg19	1	159558023	159558023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	APCS	NM_001639	exon2	c.A197G	p.Y66C	GTGCCTACAGCCT	.	170.0	54.0	51.0	0.0	.	48	.	.	Atlas-SNP
CCDC19	25790	hgsc.bcm.edu	hg19	1	159854288	159854288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	CCDC19	NM_012337	exon7	c.C835T	p.R279W	GCTCCCGCTGCTC	.	56.0	6.0	45.0	0.0	.	79	.	.	Atlas-SNP
NCSTN	23385	hgsc.bcm.edu	hg19	1	160321028	160321028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	NCSTN	NM_015331	exon6	c.A599G	p.N200S	ATCACAACCTGAG	.	283.0	79.0	183.0	0.0	.	64	.	.	Atlas-SNP
LMOD1	25802	hgsc.bcm.edu	hg19	1	201868843	201868843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	LMOD1	NM_012134	exon2	c.C1298T	p.T433M	ATCTCCGTCTTGC	.	195.0	32.0	110.0	0.0	.	59	.	.	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	hg19	1	222791466	222791466	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	MIA3	NM_198551	exon1	c.C14G	p.P5R	CGGCGCCTGGGCT	.	135.0	37.0	81.0	0.0	.	167	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240256479	240256479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	FMN2	NM_020066	exon1	c.C1070T	p.A357V	AGGATGCGCCCCG	.	76.0	12.0	43.0	0.0	.	451	.	.	Atlas-SNP
ROCK2	9475	hgsc.bcm.edu	hg19	2	11341101	11341101	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ROCK2	NM_004850	exon23	c.A2892G	p.K964K	AGCATCTTTTTCC	.	90.0	5.0	108.0	0.0	.	224	.	.	Atlas-SNP
TTC30A	92104	hgsc.bcm.edu	hg19	2	178482808	178482808	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	TTC30A,colon,carcinoma,0,1	TTC30A	NM_152275	exon1	c.C622G	p.L208V	GCTTCAGTGCTGA	.	120.0	29.0	84.0	0.0	.	60	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179567285	179567285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	TTN	NM_001267550	exon107	c.G30329A	p.W10110X	TTGTACCATGTTA	.	118.0	29.0	87.0	0.0	.	18412	.	.	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	hg19	2	182358128	182358128	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ITGA4	NM_000885	exon11	c.C1230T	p.I410I	TGGGATCTCGTCA	.	98.0	20.0	65.0	0.0	.	142	.	.	Atlas-SNP
RUFY4	285180	hgsc.bcm.edu	hg19	2	218939997	218939997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	RUFY4	NM_198483	exon9	c.A782G	p.Y261C	ATAGGTACCCCCA	.	253.0	116.0	259.0	1.0	.	59	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220348089	220348089	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	SPEG	NM_005876	exon30	c.C5904A	p.A1968A	GGCTGCCACCCCC	.	78.0	38.0	65.0	0.0	.	272	.	.	Atlas-SNP
RBMS3	27303	hgsc.bcm.edu	hg19	3	29476348	29476348	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	RBMS3	NM_001003793	exon2	c.T190A	p.Y64N	AACCTGTACATTC	.	329.0	139.0	278.0	1.0	.	62	.	.	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	hg19	3	41607592	41607592	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ULK4	NM_017886	exon32	c.C3150T	p.T1050T	TTGCATGGTATTA	.	104.0	28.0	85.0	0.0	.	150	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52419370	52419370	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	DNAH1	NM_015512	exon54	c.G8532A	p.E2844E	TTCTGAGGATGTA	.	99.0	54.0	111.0	0.0	.	534	.	.	Atlas-SNP
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100508351	100508351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ABI3BP	NM_015429	exon24	c.G1976C	p.R659T	TAAAATCTGTGTG	.	93.0	29.0	53.0	0.0	.	305	.	.	Atlas-SNP
RETNLB	84666	hgsc.bcm.edu	hg19	3	108474658	108474658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	RETNLB	NM_032579	exon3	c.C303A	p.D101E	GGTCCAGTCCACC	.	278.0	175.0	330.0	2.0	.	38	.	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	hg19	3	184295691	184295691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	EPHB3	NM_004443	exon8	c.G1645T	p.G549W	GGCTCTGGGGCCC	.	67.0	20.0	74.0	0.0	.	114	.	.	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193120567	193120567	+	Missense_Mutation	SNP	C	C	A	rs200859894	by1000genomes;alternate_allele	TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	ATP13A4,colon,carcinoma,0,1	ATP13A4	NM_032279	exon30	c.G3465T	p.Q1155H	GTCCCTCTGCCAT	.	72.0	22.0	45.0	0.0	.	154	.	C|1.000;T|0.000	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	hg19	4	113527240	113527240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	C4orf21_ENST00000505019,rectum,carcinoma,0,2	C4orf21	NM_018392	exon9	c.C2726T	p.S909F	CCCGAGGAAGAGA	.	85.0	26.0	78.0	0.0	.	223	.	.	Atlas-SNP
ANP32C	23520	hgsc.bcm.edu	hg19	4	165118848	165118848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	ANP32C,bladder,carcinoma,0,2	ANP32C	NM_012403	exon1	c.C16T	p.R6W	GAATCCGTCTGCC	.	71.0	22.0	66.0	0.0	.	59	.	.	Atlas-SNP
HELT	391723	hgsc.bcm.edu	hg19	4	185940140	185940140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	HELT	NM_001029887	exon1	c.G58A	p.A20T	ACTTGCGCCCTGG	.	138.0	86.0	167.0	0.0	.	34	.	.	Atlas-SNP
BDP1	55814	hgsc.bcm.edu	hg19	5	70782327	70782327	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	BDP1	NM_018429	exon9	c.T1086C	p.F362F	CCCTTTTGACTTC	.	321.0	79.0	239.0	0.0	.	204	.	.	Atlas-SNP
IER3	8870	hgsc.bcm.edu	hg19	6	30712143	30712143	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	IER3	NM_003897	exon1	c.C153T	p.R51R	GCTGGGGCGCCCG	.	224.0	53.0	143.0	0.0	.	5	.	.	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	hg19	6	155776002	155776002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	NOX3	NM_015718	exon3	c.G198A	p.M66I	AATTAGCATGCAG	.	124.0	80.0	120.0	0.0	.	93	.	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6150812	6150812	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	USP42	NM_032172	exon2	c.T48C	p.Y16Y	AGCCTATCAGAAT	.	173.0	66.0	106.0	0.0	.	138	.	.	Atlas-SNP
HOXA2	3199	hgsc.bcm.edu	hg19	7	27141906	27141906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	HOXA2	NM_006735	exon1	c.C214T	p.R72C	TGGGGCGGCCGCC	.	764.0	41.0	828.0	0.0	.	56	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42065983	42065983	+	Missense_Mutation	SNP	C	C	T	rs375277249		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	GLI3	NM_000168	exon8	c.G1057A	p.A353T	CGGGCGCGGAAGA	.	136.0	36.0	94.0	0.0	.	312	.	.	Atlas-SNP
AEBP1	165	hgsc.bcm.edu	hg19	7	44153377	44153377	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	AEBP1	NM_001129	exon21	c.G2994A	p.G998G	GAACGGGAACCGG	.	150.0	60.0	114.0	0.0	.	102	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53103524	53103524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	POM121L12	NM_182595	exon1	c.C160T	p.P54S	CCCTGGCCCCTGA	.	299.0	50.0	229.0	0.0	.	146	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87160674	87160674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ABCB1	NM_000927	exon22	c.T2621C	p.V874A	ATTTCAACAACTC	.	182.0	79.0	85.0	0.0	.	263	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128492798	128492798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	FLNC,NS,carcinoma,0,2	FLNC	NM_001458	exon36	c.G5996A	p.R1999Q	CCAACCGGCACAT	.	157.0	118.0	162.0	0.0	.	339	.	.	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	hg19	8	1830810	1830810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ARHGEF10	NM_014629	exon10	c.C970T	p.L324F	CAGAAGCTCGTGA	.	247.0	128.0	262.0	1.0	.	255	.	.	Atlas-SNP
CPEB3	22849	hgsc.bcm.edu	hg19	10	93811980	93811980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	CPEB3	NM_014912	exon10	c.C2086T	p.R696C	TCCAGCGGAACGG	.	96.0	55.0	112.0	0.0	.	43	.	.	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	hg19	10	112349410	112349410	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	SMC3	NM_005445	exon14	c.G1353A	p.L451L	AGAACTGGACAGA	.	720.0	176.0	718.0	0.0	.	103	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123845998	123845998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	TACC2	NM_206862	exon4	c.G3983T	p.C1328F	TGCCATGCCTGGA	.	74.0	14.0	80.0	0.0	.	271	.	.	Atlas-SNP
SWAP70	23075	hgsc.bcm.edu	hg19	11	9754136	9754136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	SWAP70,NS,carcinoma,0,1	SWAP70	NM_015055	exon7	c.G959A	p.R320H	AAGCCCGCCAGCG	.	311.0	148.0	262.0	0.0	.	40	.	.	Atlas-SNP
ACRBP	84519	hgsc.bcm.edu	hg19	12	6747504	6747504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	ACRBP,caecum,carcinoma,0,1	ACRBP	NM_032489	exon10	c.G1576A	p.V526I	GCACAACGTCCTC	.	75.0	16.0	78.0	0.0	.	52	.	.	Atlas-SNP
SYT10	341359	hgsc.bcm.edu	hg19	12	33560128	33560128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	SYT10	NM_198992	exon3	c.C673G	p.Q225E	CGTTTTGGTTGCC	.	129.0	31.0	103.0	0.0	.	109	.	.	Atlas-SNP
POLE	5426	hgsc.bcm.edu	hg19	12	133254296	133254296	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	POLE	NM_006231	exon7	c.G588A	p.Q196Q	GCCCCTCTGCAGA	.	108.0	77.0	162.0	0.0	.	416	.	.	Atlas-SNP
OR4K17	390436	hgsc.bcm.edu	hg19	14	20586326	20586326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	OR4K17	NM_001004715	exon1	c.T761A	p.I254K	TCCTCATAACCAT	.	159.0	7.0	64.0	0.0	.	58	.	.	Atlas-SNP
PATL2	197135	hgsc.bcm.edu	hg19	15	44964221	44964221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	PATL2	NM_001145112	exon7	c.T649C	p.Y217H	GGTAATAGTAGTC	.	76.0	47.0	126.0	0.0	.	19	.	.	Atlas-SNP
FAM214A	56204	hgsc.bcm.edu	hg19	15	52879386	52879386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	.	NM_019600	exon11	c.A2839G	p.R947G	AACCCCTTTTACC	.	132.0	6.0	143.0	0.0	.	.	.	.	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	hg19	15	85652345	85652345	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	PDE8A	NM_002605	exon12	c.C1098T	p.A366A	TGTTGCCTCCCGT	.	342.0	240.0	333.0	0.0	.	50	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94901809	94901809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	MCTP2	NM_001159643	exon9	c.G1269T	p.K423N	GGGAAAGGACAAC	.	142.0	86.0	170.0	0.0	.	122	.	.	Atlas-SNP
WDR90	197335	hgsc.bcm.edu	hg19	16	706396	706396	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	WDR90	NM_145294	exon18	c.G2061A	p.T687T	GGACACGCTGTCC	.	76.0	26.0	90.0	0.0	.	107	.	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	hg19	16	23486224	23486224	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	GGA2	NM_015044	exon15	c.1450+1G>C	.	TACTTACTGGGCT	.	307.0	199.0	410.0	1.0	.	49	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70601427	70601427	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	SF3B3	NM_012426	exon21	c.A2940T	p.K980N	CCGAAAATGTGAG	.	118.0	79.0	162.0	0.0	.	99	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577547	7577547	+	Missense_Mutation	SNP	C	C	T	rs121912656		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	TP53_ENST00000545858,NS,adenocarcinoma,-1,1	TP53	NM_000546	exon7	c.G734A	p.G245D	TTCATGCCGCCCA	.	104.0	61.0	128.0	0.0	.	33396	.	.	Atlas-SNP
ZNF286B	729288	hgsc.bcm.edu	hg19	17	18565670	18565670	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ZNF286B	NM_001145045	exon5	c.T1149C	p.Y383Y	ACATTTATAAGGT	.	235.0	100.0	233.0	0.0	.	75	.	.	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	hg19	17	39597054	39597054	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	KRT38	NM_006771	exon1	c.T120C	p.I40I	GGGGGCAATGTTG	.	146.0	38.0	126.0	0.0	.	63	.	.	Atlas-SNP
KLHL11	55175	hgsc.bcm.edu	hg19	17	40021606	40021606	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	KLHL11	NM_018143	exon1	c.G18A	p.V6V	CGCCGCCACTGCC	.	24.0	5.0	17.0	0.0	.	44	.	.	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	hg19	17	42157529	42157529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	HDAC5	NM_001015053	exon23	c.G2893C	p.D965H	CAGCATCAAACCC	.	67.0	18.0	63.0	0.0	.	67	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61568652	61568652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ACE	NM_000789	exon19	c.G2822A	p.W941X	AGTTCTGGAACAA	.	84.0	17.0	62.0	0.0	.	187	.	.	Atlas-SNP
ERN1	2081	hgsc.bcm.edu	hg19	17	62135324	62135324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ERN1	NM_001433	exon12	c.A1236C	p.E412D	TGCGTTTTCTGAA	.	72.0	28.0	99.0	0.0	.	102	.	.	Atlas-SNP
CANT1	124583	hgsc.bcm.edu	hg19	17	76993228	76993228	+	Silent	SNP	C	C	T	rs149367726		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	CANT1	NM_001159772	exon4	c.G477A	p.A159A	CTTCTCCGCCAGG	.	113.0	31.0	116.0	0.0	.	39	.	C|1.000;T|0.000	Atlas-SNP
MEX3C	51320	hgsc.bcm.edu	hg19	18	48703513	48703513	+	Silent	SNP	T	T	A	rs140545981		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	MEX3C	NM_016626	exon2	c.A1188T	p.G396G	ATAGTTTCCTGTA	.	74.0	36.0	42.0	0.0	.	77	.	T|1.000;A|0.000	Atlas-SNP
PTBP1	5725	hgsc.bcm.edu	hg19	19	806459	806459	+	Missense_Mutation	SNP	C	C	T	rs375905582		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	PTBP1	NM_002819	exon10	c.C1022T	p.S341L	TCCCCTCGGCGGC	.	205.0	58.0	196.0	0.0	.	43	.	.	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	hg19	19	3759745	3759745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	APBA3	NM_004886	exon2	c.A518C	p.E173A	CAGGGTTCCGGGG	.	89.0	35.0	109.0	0.0	.	28	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9074291	9074291	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	MUC16	NM_024690	exon3	c.G13155T	p.V4385V	GATGGTCACTCCT	.	160.0	13.0	105.0	0.0	.	4315	.	.	Atlas-SNP
CRTC1	23373	hgsc.bcm.edu	hg19	19	18870874	18870874	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	CRTC1	NM_001098482	exon9	c.A770T	p.N257I	CCCACAACACAGG	.	231.0	52.0	245.0	0.0	.	88	.	.	Atlas-SNP
PPP5C	5536	hgsc.bcm.edu	hg19	19	46893387	46893387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	PPP5C	NM_006247	exon12	c.G1435C	p.V479L	ACAGCAGTGGTGA	.	131.0	34.0	112.0	0.0	.	44	.	.	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	hg19	19	47960453	47960453	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	SLC8A2,colon,carcinoma,0,1	SLC8A2	NM_015063	exon3	c.G1074A	p.T358T	CAGCCGCGTGGCC	.	68.0	7.0	92.0	1.0	.	77	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20150059	20150059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	C20orf26	NM_015585	exon13	c.C1340A	p.T447N	CCTGCACCCTCGA	.	188.0	34.0	121.0	0.0	.	188	.	.	Atlas-SNP
ZDHHC15	158866	hgsc.bcm.edu	hg19	X	74644581	74644581	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	ZDHHC15	NM_144969	exon8	c.T642A	p.L214L	AAGAAAAAGGACA	.	677.0	441.0	580.0	0.0	.	65	.	.	Atlas-SNP
TAF9B	51616	hgsc.bcm.edu	hg19	X	77393577	77393577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	TAF9B	NM_015975	exon3	c.T152G	p.L51R	TCATCCAGAATTG	.	282.0	182.0	365.0	1.0	.	30	.	.	Atlas-SNP
NKAP	79576	hgsc.bcm.edu	hg19	X	119077493	119077493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	NKAP	NM_024528	exon1	c.A76G	p.K26E	GACTCTTCGACGA	.	156.0	109.0	229.0	0.0	.	53	.	.	Atlas-SNP
MCCC1	56922	hgsc.bcm.edu	hg19	3	182756812	182756832	+	Frame_Shift_Del	DEL	GATCACTCACATTGTACTGAC	GATCACTCACATTGTACTGAC	-	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	GATCACTCACATTGTACTGAC	GATCACTCACATTGTACTGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	MCCC1	NM_020166	exon12	c.1368_1377del	p.456_459del	.	.	158.0	32.0	116.0	0.0	.	87	.	.	Atlas-Indel,Pindel
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44650434	44650435	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	SLC12A5	NM_001134771	exon1	c.30_31insC	p.L10fs	.	.	60.0	10.0	39.0	0.0	.	181	.	.	Atlas-INDEL
RASL11A	387496	hgsc.bcm.edu	hg19	13	27847361	27847361	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	RASL11A	NM_206827	exon4	c.458delA	p.H153fs	.	.	168.0	122.0	264.0	0.0	.	26	.	.	Atlas-Indel,Pindel
H6PD	9563	hgsc.bcm.edu	hg19	1	9323715	9323737	+	Frame_Shift_Del	DEL	CGGCGCAGAGCCAGTGCCTGCCC	CGGCGCAGAGCCAGTGCCTGCCC	-	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	CGGCGCAGAGCCAGTGCCTGCCC	CGGCGCAGAGCCAGTGCCTGCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	H6PD	NM_004285	exon5	c.1162_1184del	p.388_395del	.	.	153.0	46.0	150.0	0.0	.	71	.	.	Atlas-Indel,Pindel
AKAP6	9472	hgsc.bcm.edu	hg19	14	32902724	32902725	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2Y-A9H8-01A-11D-A38X-10	TCGA-2Y-A9H8-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a8ce4db3-59d7-41a4-bd0d-d6dc39a003e4	ea9d6487-fc5c-429d-9870-af174a03bd4d	.	AKAP6	NM_004274	exon2	c.25_26insC	p.S9fs	.	.	156.0	13.0	99.0	0.0	.	308	.	.	Atlas-Indel,Pindel
