Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EPHA8	2046	hgsc.bcm.edu	hg19	1	22902961	22902961	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	EPHA8	NM_020526	exon3	c.A411T	p.T137T	CAGCACACAAGAA	.	219.0	98.0	212.0	0.0	.	221	.	.	Atlas-SNP
RNPC3	55599	hgsc.bcm.edu	hg19	1	104068797	104068797	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	RNPC3	NM_017619	exon1	c.G105T	p.P35P	CCTGCCGGCTGAG	.	144.0	64.0	170.0	0.0	.	20	.	.	Atlas-SNP
CERS2	29956	hgsc.bcm.edu	hg19	1	150941409	150941409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	LASS2,colon,carcinoma,0,1	.	NM_022075	exon2	c.G158A	p.R53Q	AAGTATCGAACGA	.	170.0	39.0	88.0	0.0	.	.	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280892	152280892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	FLG,NS,carcinoma,+1,2	FLG	NM_002016	exon3	c.C6470T	p.S2157L	TCTACCGATTGCT	.	209.0	76.0	139.0	0.0	.	900	.	.	Atlas-SNP
OR6N2	81442	hgsc.bcm.edu	hg19	1	158746473	158746473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	OR6N2	NM_001005278	exon1	c.G953C	p.X318S	GAAAGTCAAAGAT	.	87.0	29.0	35.0	0.0	.	78	.	.	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	hg19	1	222716922	222716922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	HHIPL2	NM_024746	exon2	c.G931A	p.V311I	GAGAAACCTTCAT	.	100.0	44.0	110.0	0.0	.	122	.	.	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	hg19	2	26501661	26501661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	HADHB	NM_000183	exon8	c.G622T	p.A208S	TTCCTAGCACCTG	.	108.0	55.0	94.0	0.0	.	50	.	.	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40655983	40655983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SLC8A1	NM_001252624	exon1	c.A1438T	p.I480L	CATCTATGATACC	.	83.0	31.0	67.0	0.0	.	221	.	.	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	hg19	2	48018238	48018238	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MSH6	NM_000179	exon2	c.A433T	p.K145X	GTTAGCAAAAGGC	.	166.0	71.0	152.0	0.0	.	341	.	.	Atlas-SNP
PDCL3	79031	hgsc.bcm.edu	hg19	2	101186107	101186107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PDCL3	NM_024065	exon4	c.T292A	p.S98T	GAGATCTCAGGGA	.	194.0	85.0	140.0	0.0	.	27	.	.	Atlas-SNP
MRPS9	64965	hgsc.bcm.edu	hg19	2	105696507	105696507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MRPS9	NM_182640	exon5	c.A476G	p.Y159C	CATACTATTCATT	.	53.0	10.0	42.0	0.0	.	32	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167262815	167262815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SCN7A	NM_002976	exon25	c.G4324T	p.A1442S	AAATTGCATCAAG	.	389.0	162.0	202.0	0.0	.	410	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179424152	179424152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	TTN	NM_001267550	exon326	c.T86707G	p.S28903A	TGTAGGAGAGGCG	.	167.0	32.0	135.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196741411	196741411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DNAH7	NM_018897	exon37	c.A5974G	p.N1992D	GTTGATTTAAAAG	.	76.0	31.0	43.0	0.0	.	512	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197185161	197185161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	HECW2	NM_020760	exon8	c.A887G	p.D296G	ATTTGATCACTGC	.	171.0	23.0	140.0	0.0	.	239	.	.	Atlas-SNP
ANKRD44	91526	hgsc.bcm.edu	hg19	2	197878357	197878357	+	Missense_Mutation	SNP	C	C	T	rs374386037		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ANKRD44	NM_001195144	exon18	c.G1802A	p.R601H	GCAGTGCGGCCTT	.	135.0	63.0	113.0	0.0	.	281	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207171124	207171124	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZDBF2	NM_020923	exon5	c.A1872G	p.A624A	TAAAGCACATCTT	.	74.0	29.0	26.0	0.0	.	531	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19389280	19389280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	KCNH8	NM_144633	exon5	c.T634C	p.F212L	TCCAAATTCATAC	.	126.0	52.0	72.0	0.0	.	189	.	.	Atlas-SNP
MAP4	4134	hgsc.bcm.edu	hg19	3	47910778	47910778	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MAP4	NM_001134364	exon14	c.C2899T	p.R967X	GCTTTCGGGTTGT	.	129.0	58.0	106.0	0.0	.	176	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49933256	49933256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MST1R	NM_002447	exon12	c.G2854A	p.G952R	GGACCCCATCTGG	.	44.0	6.0	36.0	0.0	.	205	.	.	Atlas-SNP
RNF168	165918	hgsc.bcm.edu	hg19	3	196199175	196199175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	RNF168	NM_152617	exon6	c.T1231C	p.S411P	CGGGGGACACTTT	.	99.0	8.0	74.0	0.0	.	49	.	.	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	hg19	4	266039	266039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	ZNF732_ENST00000419098,NS,carcinoma,0,4	ZNF732	NM_001137608	exon3	c.G604T	p.D202Y	TAAAGTCTTTGCC	.	117.0	24.0	81.0	0.0	.	117	.	.	Atlas-SNP
NSG1	0	hgsc.bcm.edu	hg19	4	4411339	4411339	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	NM_014392	exon4	c.T286A	p.C96S	CTCACCTGCGTCG	.	82.0	34.0	88.0	0.0	.	.	.	.	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25767058	25767058	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SEL1L3	NM_015187	exon21	c.2846-1G>A	.	AATATGCTGCAGG	.	72.0	28.0	81.0	0.0	.	62	.	.	Atlas-SNP
CLOCK	9575	hgsc.bcm.edu	hg19	4	56308736	56308736	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CLOCK	NM_004898	exon21	c.T1968G	p.T656T	TGTAAGAGTGCTC	.	128.0	54.0	112.0	0.0	.	81	.	.	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69188594	69188594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	YTHDC1	NM_001031732	exon11	c.T1474C	p.F492L	GGGGAAACAGAAG	.	257.0	119.0	180.0	0.0	.	81	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	143226623	143226623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	INPP4B	NM_003866	exon10	c.T491C	p.V164A	CTCAGGACCAGCA	.	345.0	149.0	291.0	0.0	.	132	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155410658	155410658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DCHS2	NM_001142552	exon1	c.C1850T	p.T617I	CGGATAGTGCTGA	.	175.0	31.0	129.0	0.0	.	594	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155412105	155412105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DCHS2	NM_001142552	exon1	c.C403T	p.R135W	CCCGCCGCTCGCG	.	434.0	253.0	263.0	0.0	.	594	.	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	hg19	5	45695977	45695977	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	HCN1	NM_021072	exon1	c.C219T	p.G73G	CTCGCCGCCGCCG	.	58.0	18.0	22.0	0.0	.	298	.	.	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	hg19	5	52229759	52229759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ITGA1	NM_181501	exon23	c.A2897G	p.N966S	CTGCCAATGAGAC	.	517.0	191.0	379.0	0.0	.	112	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60817126	60817126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZSWIM6	NM_020928	exon5	c.G1370A	p.C457Y	CCCACTGCAAGTT	.	185.0	83.0	141.0	0.0	.	51	.	.	Atlas-SNP
SLCO4C1	353189	hgsc.bcm.edu	hg19	5	101627074	101627074	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	SLCO4C1,NS,carcinoma,0,1	SLCO4C1	NM_180991	exon2	c.G592T	p.E198X	TATATTCTCCACT	.	245.0	14.0	196.0	0.0	.	113	.	.	Atlas-SNP
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137241951	137241951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PKD2L2	NM_001258448	exon6	c.C803A	p.S268Y	TTTACTCTGTGAA	.	171.0	79.0	131.0	0.0	.	68	.	.	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	hg19	5	140228373	140228373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PCDHA9	NM_031857	exon1	c.G293A	p.R98Q	GCGGGCGGAGCGC	.	245.0	36.0	187.0	0.0	.	373	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141335204	141335204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PCDH12	NM_016580	exon1	c.C2213A	p.S738Y	CAGATGGACATGA	.	94.0	36.0	86.0	0.0	.	133	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150945848	150945848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	FAT2	NM_001447	exon1	c.A2645G	p.D882G	TCGCGGTCCAGGT	.	202.0	99.0	151.0	0.0	.	465	.	.	Atlas-SNP
CAGE1	285782	hgsc.bcm.edu	hg19	6	7378874	7378874	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CAGE1	NM_001170693	exon4	c.C663T	p.S221S	AGGTTGGCTAGGG	.	212.0	96.0	189.0	0.0	.	165	.	.	Atlas-SNP
MRS2	57380	hgsc.bcm.edu	hg19	6	24403393	24403393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MRS2	NM_020662	exon1	c.G119T	p.G40V	CCTGCGGCCGCCG	.	44.0	12.0	41.0	0.0	.	31	.	.	Atlas-SNP
TDP2	51567	hgsc.bcm.edu	hg19	6	24651152	24651152	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	TDP2	NM_016614	exon7	c.T953A	p.I318K	AAAAATATTCGAT	.	226.0	146.0	127.0	0.0	.	29	.	.	Atlas-SNP
SLC17A2	10246	hgsc.bcm.edu	hg19	6	25917052	25917052	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SLC17A2	NM_005835	exon8	c.T791A	p.V264D	ATGGGGACAGCTC	.	121.0	53.0	95.0	0.0	.	70	.	.	Atlas-SNP
HIST1H4G	8369	hgsc.bcm.edu	hg19	6	26247145	26247145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	HIST1H4G	NM_003547	exon1	c.A61G	p.K21E	GTACCTTGCGATG	.	75.0	34.0	60.0	0.0	.	18	.	.	Atlas-SNP
MRPS18B	28973	hgsc.bcm.edu	hg19	6	30587275	30587275	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MRPS18B	NM_014046	exon2	c.C84T	p.P28P	GGTTCCCCTCCAG	.	79.0	33.0	64.0	0.0	.	22	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90377748	90377748	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MDN1	NM_014611	exon84	c.C14079A	p.I4693I	ATTTCCGATCTGG	.	107.0	5.0	81.0	0.0	.	478	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90410473	90410473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MDN1	NM_014611	exon56	c.G8530C	p.D2844H	TAATGTCTTCCTG	.	175.0	69.0	123.0	0.0	.	478	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117116996	117116996	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	GPRC6A	NM_148963	exon5	c.A1551G	p.Q517Q	TTGAATTTGCTAT	.	63.0	34.0	69.0	0.0	.	152	.	.	Atlas-SNP
NCOA7	135112	hgsc.bcm.edu	hg19	6	126210902	126210902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	NCOA7	NM_001199619	exon10	c.G1702T	p.G568C	CAGGCGGGTGATC	.	128.0	34.0	102.0	0.0	.	92	.	.	Atlas-SNP
DACT2	168002	hgsc.bcm.edu	hg19	6	168708969	168708969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DACT2	NM_214462	exon4	c.G1468T	p.G490C	GGGGACCCATTTT	.	80.0	9.0	69.0	0.0	.	46	.	.	Atlas-SNP
C7orf25	79020	hgsc.bcm.edu	hg19	7	42949271	42949271	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	C7orf25	NM_001099858	exon2	c.C1403G	p.P468R	GGTAAGGGGGTGG	.	198.0	71.0	137.0	0.0	.	36	.	.	Atlas-SNP
SEMA3C	10512	hgsc.bcm.edu	hg19	7	80378240	80378240	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SEMA3C	NM_006379	exon17	c.C1816T	p.Q606X	CTTTCTGTAACAG	.	75.0	37.0	36.0	0.0	.	106	.	.	Atlas-SNP
RNF148	378925	hgsc.bcm.edu	hg19	7	122342140	122342140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	RNF148	NM_198085	exon1	c.C665A	p.T222N	CTCCTGGTGAAAG	.	107.0	26.0	34.0	0.0	.	71	.	.	Atlas-SNP
ZNF467	168544	hgsc.bcm.edu	hg19	7	149463194	149463194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF467	NM_207336	exon5	c.G397A	p.A133T	TGTACGCGGCAGC	.	101.0	7.0	87.0	0.0	.	50	.	.	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	hg19	8	24201031	24201031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ADAM28	NM_014265	exon18	c.G1924T	p.E642X	GACCATGAGCTCC	.	58.0	42.0	57.0	0.0	.	100	.	.	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	32616839	32616839	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	NRG1	NM_013956	exon11	c.A961C	p.N321H	TCTAAAAACGTCA	.	57.0	21.0	74.0	0.0	.	260	.	.	Atlas-SNP
MOS	4342	hgsc.bcm.edu	hg19	8	57025864	57025864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MOS	NM_005372	exon1	c.G678T	p.L226F	ATCTTCCAACTTC	.	96.0	45.0	97.0	0.0	.	63	.	.	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71037078	71037078	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	NCOA2	NM_006540	exon20	c.A3939G	p.P1313P	AAAGCCTGGATCA	.	135.0	87.0	54.0	0.0	.	147	.	.	Atlas-SNP
DCAF4L2	138009	hgsc.bcm.edu	hg19	8	88885352	88885352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DCAF4L2	NM_152418	exon1	c.A848T	p.Q283L	AGGAATTGGCCAT	.	120.0	40.0	100.0	0.0	.	187	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113301671	113301671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CSMD3	NM_198123	exon57	c.A9071G	p.K3024R	GAACGCTTTCCTG	.	102.0	40.0	62.0	0.0	.	2325	.	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17394651	17394651	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CNTLN	NM_017738	exon15	c.A2199G	p.Q733Q	GCAACAAGAAGAT	.	392.0	163.0	244.0	0.0	.	128	.	.	Atlas-SNP
SPAG8	26206	hgsc.bcm.edu	hg19	9	35811469	35811469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SPAG8	NM_001039592	exon2	c.C574T	p.H192Y	CAGGATGAGAGCC	.	44.0	20.0	30.0	0.0	.	67	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79324435	79324435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PRUNE2	NM_015225	exon8	c.T2755C	p.W919R	GGTTCCAGGAATC	.	80.0	20.0	117.0	0.0	.	331	.	.	Atlas-SNP
TLE1	7088	hgsc.bcm.edu	hg19	9	84235385	84235385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	TLE1	NM_005077	exon9	c.A682G	p.K228E	CCACCTTCCTTTT	.	97.0	5.0	105.0	0.0	.	81	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767525	105767525	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CYLC2	NM_001340	exon5	c.A612T	p.T204T	GGCAACAGAATCT	.	190.0	141.0	298.0	0.0	.	109	.	.	Atlas-SNP
RBM18	92400	hgsc.bcm.edu	hg19	9	125007619	125007619	+	Missense_Mutation	SNP	C	C	A	rs149650476	alternate_allele	TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	RBM18	NM_033117	exon5	c.G329T	p.R110I	TCATATCTCTGAA	.	22.0	13.0	31.0	0.0	.	15	.	C|1.000;T|0.000	Atlas-SNP
NEK6	10783	hgsc.bcm.edu	hg19	9	127089633	127089633	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	NEK6	NM_001166171	exon8	c.C633T	p.N211N	TGCCAACGTGTTC	.	28.0	24.0	59.0	0.0	.	47	.	.	Atlas-SNP
TYSND1	219743	hgsc.bcm.edu	hg19	10	71905794	71905794	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	TYSND1	NM_173555	exon1	c.C549G	p.G183G	AAACCAGCCCAGC	.	118.0	54.0	112.0	0.0	.	20	.	.	Atlas-SNP
INPP5F	22876	hgsc.bcm.edu	hg19	10	121571371	121571371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	INPP5F	NM_014937	exon15	c.A1790C	p.E597A	ACCAGGAACTAAT	.	91.0	25.0	89.0	0.0	.	112	.	.	Atlas-SNP
OR4C3	256144	hgsc.bcm.edu	hg19	11	48346805	48346805	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	OR4C3	NM_001004702	exon1	c.A313T	p.K105X	GCTCCTAAACTCA	.	105.0	7.0	72.0	0.0	.	75	.	.	Atlas-SNP
DDB1	1642	hgsc.bcm.edu	hg19	11	61097043	61097043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DDB1	NM_001923	exon4	c.G341T	p.R114L	GAGGGGCGGCCAA	.	107.0	54.0	71.0	0.0	.	100	.	.	Atlas-SNP
PRSS23	11098	hgsc.bcm.edu	hg19	11	86519158	86519158	+	Missense_Mutation	SNP	C	C	T	rs200816081		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PRSS23	NM_007173	exon2	c.C473T	p.T158M	TATCCACGGGCTG	.	187.0	72.0	170.0	0.0	.	49	.	C|0.999;T|0.001	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92531256	92531256	+	Missense_Mutation	SNP	A	A	C	rs71473491	bycluster;alternate_allele	TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	FAT3	NM_001008781	exon9	c.A5077C	p.I1693L	ATTCTAATCTCTG	.	145.0	61.0	107.0	0.0	.	1822	.	A|0.500;G|0.500	Atlas-SNP
TAF1D	79101	hgsc.bcm.edu	hg19	11	93471289	93471289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	TAF1D	NM_024116	exon3	c.A445G	p.I149V	TTAAAATTTTTCT	.	86.0	34.0	75.0	0.0	.	18	.	.	Atlas-SNP
PDZD3	79849	hgsc.bcm.edu	hg19	11	119059807	119059807	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PDZD3	NM_001168468	exon10	c.C1381T	p.L461L	AATGACCTGGAGA	.	37.0	16.0	31.0	0.0	.	42	.	.	Atlas-SNP
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10149501	10149501	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	CLEC1B_ENST00000398939,bladder,carcinoma,0,2	CLEC1B	NM_016509	exon4	c.C382G	p.Q128E	AGTACTGCTTACT	.	68.0	21.0	60.0	0.0	.	39	.	.	Atlas-SNP
H2AFJ	55766	hgsc.bcm.edu	hg19	12	14927760	14927760	+	Missense_Mutation	SNP	A	A	G	rs371368734		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	H2AFJ	NM_177925	exon1	c.A356G	p.K119R	TGCCCAAGAAGAC	.	160.0	76.0	159.0	0.0	.	14	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43846185	43846185	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ADAMTS20	NM_025003	exon14	c.T1971C	p.Y657Y	CTGACAATAGAGT	.	125.0	47.0	68.0	0.0	.	635	.	.	Atlas-SNP
PUS7L	83448	hgsc.bcm.edu	hg19	12	44148379	44148379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	PUS7L	NM_001098614	exon2	c.G670T	p.A224S	TCTTTGCATCCAA	.	216.0	17.0	149.0	0.0	.	73	.	.	Atlas-SNP
POLR3B	55703	hgsc.bcm.edu	hg19	12	106903268	106903268	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	POLR3B	NM_018082	exon28	c.C3343G	p.Q1115E	CTCTTCCAGGAAC	.	98.0	40.0	82.0	0.0	.	123	.	.	Atlas-SNP
RHOF	54509	hgsc.bcm.edu	hg19	12	122218862	122218862	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	RHOF	NM_019034	exon4	c.C387T	p.I129I	GCAGCCGATGAGC	.	116.0	45.0	119.0	0.0	.	6	.	.	Atlas-SNP
AACS	65985	hgsc.bcm.edu	hg19	12	125621327	125621327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	AACS	NM_023928	exon17	c.G1798T	p.V600F	GACTTGGTTAAGA	.	97.0	43.0	76.0	0.0	.	59	.	.	Atlas-SNP
ZNF10	7556	hgsc.bcm.edu	hg19	12	133728487	133728487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF10	NM_015394	exon4	c.C253T	p.P85S	ACCCATCCTGGTG	.	74.0	36.0	91.0	0.0	.	58	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103398055	103398055	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	NM_001146197	exon4	c.A4992G	p.E1664E	AGCCTGTTCCTTT	.	143.0	51.0	75.0	0.0	.	.	.	.	Atlas-SNP
SOX1	6656	hgsc.bcm.edu	hg19	13	112723111	112723111	+	Missense_Mutation	SNP	C	C	T	rs199891204	bycluster	TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	SOX1,spinal_cord,glioma,0,1	SOX1	NM_005986	exon1	c.C1139T	p.A380V	CGGGCGCGGGCGT	.	10.0	4.0	21.0	0.0	.	14	.	.	Atlas-SNP
CDKN3	1033	hgsc.bcm.edu	hg19	14	54866651	54866651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CDKN3	NM_005192	exon2	c.G49A	p.E17K	TCAGATGAAGAGC	.	370.0	157.0	356.0	1.0	.	9	.	.	Atlas-SNP
MKRN3	7681	hgsc.bcm.edu	hg19	15	23812175	23812175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MKRN3	NM_005664	exon1	c.T1246C	p.C416R	GACACATGCTTTT	.	105.0	43.0	110.0	0.0	.	155	.	.	Atlas-SNP
USP8	9101	hgsc.bcm.edu	hg19	15	50789394	50789394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	USP8	NM_001128610	exon18	c.A3004C	p.K1002Q	ATCTGGAAGTTAC	.	114.0	27.0	98.0	0.0	.	90	.	.	Atlas-SNP
MEGF11	84465	hgsc.bcm.edu	hg19	15	66274611	66274611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MEGF11	NM_032445	exon6	c.T610A	p.C204S	AGAGGCACTCGCC	.	55.0	19.0	60.0	0.0	.	70	.	.	Atlas-SNP
SMAD3	4088	hgsc.bcm.edu	hg19	15	67457388	67457388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SMAD3	NM_005902	exon2	c.G362T	p.C121F	AGGTCTGCGTGAA	.	53.0	18.0	57.0	0.0	.	119	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72231259	72231259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MYO9A	NM_006901	exon16	c.G2312A	p.R771Q	TTTTTCCGGGTTA	.	77.0	26.0	36.0	0.0	.	203	.	.	Atlas-SNP
TICRR	90381	hgsc.bcm.edu	hg19	15	90168109	90168109	+	Missense_Mutation	SNP	G	G	A	rs149974689	bycluster	TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	NM_152259	exon20	c.G4568A	p.R1523H	CTTCCCGTGACGT	.	111.0	54.0	85.0	0.0	.	.	.	G|1.000;A|0.000	Atlas-SNP
C15orf32	145858	hgsc.bcm.edu	hg19	15	93015518	93015518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	C15orf32	NM_153040	exon1	c.C140T	p.A47V	TCTCGGCGAGGCC	.	192.0	91.0	188.0	0.0	.	22	.	.	Atlas-SNP
GPR139	124274	hgsc.bcm.edu	hg19	16	20043728	20043728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	GPR139	NM_001002911	exon2	c.T391C	p.C131R	GGTGGCAGACAGC	.	149.0	73.0	114.0	0.0	.	75	.	.	Atlas-SNP
CDH11	1009	hgsc.bcm.edu	hg19	16	65026819	65026819	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CDH11	NM_001797	exon5	c.A642G	p.T214T	AGTACCTGTCTGT	.	55.0	24.0	27.0	0.0	.	260	.	.	Atlas-SNP
SLC52A1	55065	hgsc.bcm.edu	hg19	17	4937150	4937150	+	Missense_Mutation	SNP	G	G	A	rs370188723		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	NM_017986	exon3	c.C634T	p.R212W	GACCCCGGAAGGC	.	77.0	55.0	126.0	0.0	.	.	.	.	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8140795	8140795	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	CTC1	NM_025099	exon5	c.A690C	p.L230L	TCGAACTAGACTC	.	53.0	36.0	100.0	0.0	.	75	.	.	Atlas-SNP
TLK2	11011	hgsc.bcm.edu	hg19	17	60685417	60685417	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	TLK2	NM_006852	exon21	c.C1987T	p.Q663X	CATAACCAGTCTC	.	338.0	95.0	229.0	0.0	.	223	.	.	Atlas-SNP
MARCH10	162333	hgsc.bcm.edu	hg19	17	60814012	60814012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MARCH10	NM_001100875	exon6	c.A1217T	p.K406I	TCGGATTTGGTGT	.	130.0	76.0	80.0	0.0	.	102	.	.	Atlas-SNP
MFSD11	79157	hgsc.bcm.edu	hg19	17	74772613	74772613	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	MFSD11,NS,lymphoid_neoplasm,0,1	MFSD11	NM_001242532	exon12	c.A1175T	p.K392M	TCTTCAAGTTTGT	.	60.0	36.0	46.0	0.0	.	47	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80044945	80044945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	FASN	NM_004104	exon21	c.G3408T	p.E1136D	CAGCTCCTCCTGC	.	176.0	51.0	115.0	0.0	.	154	.	.	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	hg19	18	8777845	8777845	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	NM_015210	exon5	c.A372G	p.R124R	AAAAAGAAGAAGC	.	100.0	34.0	99.0	0.0	.	.	.	.	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	hg19	18	31599308	31599308	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	NOL4,colon,carcinoma,0,1	NOL4	NM_003787	exon6	c.C1030T	p.R344X	CCTCTCGTTCCAT	.	69.0	27.0	42.0	0.0	.	139	.	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1046943	1046943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ABCA7	NM_019112	exon14	c.G1765A	p.A589T	AGCCGCGCGGTGC	.	89.0	44.0	66.0	0.0	.	174	.	.	Atlas-SNP
SBNO2	22904	hgsc.bcm.edu	hg19	19	1116910	1116910	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SBNO2	NM_014963	exon16	c.C1720T	p.L574L	ACTGCAGCCCGAT	.	26.0	7.0	19.0	0.0	.	112	.	.	Atlas-SNP
ZNF799	90576	hgsc.bcm.edu	hg19	19	12502454	12502454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF799	NM_001080821	exon4	c.A758G	p.Y253C	CATTCATACAGTT	.	113.0	50.0	54.0	0.0	.	111	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23543878	23543878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF91	NM_003430	exon4	c.T1903C	p.C635R	TGCCACATTCTTC	.	164.0	77.0	112.0	0.0	.	349	.	.	Atlas-SNP
LSR	51599	hgsc.bcm.edu	hg19	19	35758051	35758051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	LSR	NM_205834	exon9	c.G1328T	p.R443L	ACTGGCGATCTCG	.	147.0	67.0	178.0	0.0	.	60	.	.	Atlas-SNP
ZNF780B	163131	hgsc.bcm.edu	hg19	19	40540678	40540678	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF780B	NM_001005851	exon5	c.C2088G	p.P696P	TACAAAGGGTTTC	.	124.0	52.0	84.0	0.0	.	143	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53057402	53057402	+	Silent	SNP	A	A	G	rs375755660		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF808	NM_001039886	exon5	c.A1233G	p.Q411Q	TCATCAATCAAGC	.	122.0	61.0	115.0	0.0	.	81	.	.	Atlas-SNP
DPRX	503834	hgsc.bcm.edu	hg19	19	54140215	54140215	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DPRX	NM_001012728	exon3	c.T549C	p.C183C	TGCCTGTTCATCT	.	107.0	44.0	95.0	0.0	.	34	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54314219	54314219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	NLRP12	NM_144687	exon3	c.G694T	p.A232S	AGTCCAGCATCAC	.	76.0	18.0	79.0	0.0	.	236	.	.	Atlas-SNP
SIRPD	128646	hgsc.bcm.edu	hg19	20	1515074	1515074	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	SIRPD	NM_178460	exon4	c.A591C	p.K197N	GGATTATTTTGAC	.	62.0	27.0	47.0	0.0	.	34	.	.	Atlas-SNP
NAA20	51126	hgsc.bcm.edu	hg19	20	20013187	20013187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	NAA20	NM_016100	exon5	c.T341C	p.V114A	TAAGAGTATCTAA	.	154.0	7.0	94.0	0.0	.	15	.	.	Atlas-SNP
WFDC6	140870	hgsc.bcm.edu	hg19	20	44168001	44168001	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	WFDC6	NM_080827	exon1	c.T46C	p.L16L	CCCCCAAAAGGAT	.	139.0	53.0	87.0	0.0	.	13	.	.	Atlas-SNP
WFDC6	140870	hgsc.bcm.edu	hg19	20	44168025	44168025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	WFDC6	NM_080827	exon1	c.C22T	p.P8S	GGATTGGCAGAAG	.	142.0	54.0	92.0	0.0	.	13	.	.	Atlas-SNP
ZNF334	55713	hgsc.bcm.edu	hg19	20	45131451	45131451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF334	NM_018102	exon5	c.T527G	p.L176W	ATTCCCAAATGAC	.	97.0	40.0	63.0	0.0	.	101	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57766716	57766716	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZNF831	NM_178457	exon1	c.G642T	p.L214L	CCTCCTGGAGGAA	.	100.0	41.0	69.0	0.0	.	287	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47656824	47656824	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MCM3AP	NM_003906	exon27	c.C5703G	p.P1901P	ATAGAGGGGAAGG	.	66.0	30.0	69.0	0.0	.	146	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26243585	26243585	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MYO18B	NM_032608	exon20	c.C3741T	p.F1247F	TGGGTTCCACATC	.	59.0	24.0	56.0	0.0	.	322	.	.	Atlas-SNP
OSM	5008	hgsc.bcm.edu	hg19	22	30659920	30659920	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	OSM	NM_020530	exon3	c.C711T	p.P237P	CCTGGAGGGTCTG	.	41.0	20.0	46.0	0.0	.	23	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34148402	34148402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	FAM47A	NM_203408	exon1	c.A1994T	p.E665V	TTGTCCTCATCCT	.	79.0	68.0	73.0	0.0	.	249	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107869539	107869539	+	Missense_Mutation	SNP	G	G	T	rs281874712		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	COL4A5	NM_000495	exon36	c.G3206T	p.G1069V	ATCCTGGTATTTC	.	71.0	16.0	42.0	0.0	.	262	.	.	Atlas-SNP
DCAF12L2	340578	hgsc.bcm.edu	hg19	X	125299403	125299403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	DCAF12L2	NM_001013628	exon1	c.G505A	p.E169K	GGTTTTCGCCGCC	.	101.0	81.0	99.0	0.0	.	157	.	.	Atlas-SNP
VGLL1	51442	hgsc.bcm.edu	hg19	X	135631014	135631014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	VGLL1	NM_016267	exon3	c.C481G	p.P161A	CCCCAGCCTGATG	.	84.0	7.0	59.0	0.0	.	41	.	.	Atlas-SNP
MAGEC2	51438	hgsc.bcm.edu	hg19	X	141290940	141290940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	MAGEC2	NM_016249	exon3	c.G834T	p.W278C	CTGCACCCAAACT	.	50.0	25.0	47.0	0.0	.	102	.	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	hg19	X	154194337	154194337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	F8	NM_000132	exon9	c.A1351G	p.T451A	CATCTGTGTATGC	.	76.0	66.0	50.0	0.0	.	646	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6037	6037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	ENST00000361624	exon1	c.G134A	p.G45D	AGCCAGGCAACCT	.	75.0	7.0	26.0	0.0	.	.	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7896	7896	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	ENST00000361739	exon1	c.G311A	p.W104X	ACCAATGGTACTG	.	45.0	14.0	20.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13633	13633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	.	ENST00000361567	exon1	c.G1297A	p.G433S	CTAACAGGTCAAC	.	38.0	10.0	16.0	0.0	.	.	.	.	Atlas-SNP
USP8	9101	hgsc.bcm.edu	hg19	15	50789399	50789401	+	In_Frame_Del	DEL	ACC	ACC	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	USP8	NM_001128610	exon18	c.3008_3010del	p.1003_1004del	.	.	110.0	29.0	95.0	0.0	.	90	.	.	Atlas-Indel,Pindel
EFNB2	1948	hgsc.bcm.edu	hg19	13	107187266	107187266	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	EFNB2	NM_004093	exon1	c.48delG	p.L16fs	.	.	111.0	51.0	97.0	0.0	.	39	.	.	Atlas-Indel,Pindel
ZBTB9	221504	hgsc.bcm.edu	hg19	6	33424037	33424038	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	ZBTB9	NM_152735	exon2	c.1159_1160del	p.387_387del	.	.	104.0	37.0	106.0	0.0	.	23	.	.	Atlas-Indel,Pindel
BAI1	575	hgsc.bcm.edu	hg19	8	143546087	143546087	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	BAI1	NM_001702	exon1	c.527delT	p.V176fs	.	.	62.0	23.0	47.0	0.0	.	146	.	.	Atlas-Indel,Pindel
KRTAP21-2	337978	hgsc.bcm.edu	hg19	21	32119370	32119393	+	In_Frame_Del	DEL	AGCCATAGCCACAGCCAGTTCCAT	AGCCATAGCCACAGCCAGTTCCAT	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	AGCCATAGCCACAGCCAGTTCCAT	AGCCATAGCCACAGCCAGTTCCAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	KRTAP21-2	NM_181617	exon1	c.129_152del	p.43_51del	.	.	67.0	26.0	62.0	0.0	.	16	.	.	Atlas-INDEL
GSPT1	2935	hgsc.bcm.edu	hg19	16	11991733	11991750	+	Frame_Shift_Del	DEL	TTGAACCTAGACAAGAGA	TTGAACCTAGACAAGAGA	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	TTGAACCTAGACAAGAGA	TTGAACCTAGACAAGAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	GSPT1	NM_001130006	exon3	c.395_401del	p.132_134del	.	.	195.0	41.0	180.0	0.0	.	71	.	.	Atlas-Indel,Pindel
OR11H6	122748	hgsc.bcm.edu	hg19	14	20692318	20692318	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	OR11H6	NM_001004480	exon1	c.449delA	p.Y150fs	.	.	80.0	35.0	48.0	0.0	.	60	.	.	Atlas-Indel,Pindel
UPF3B	65109	hgsc.bcm.edu	hg19	X	118975169	118975172	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-2Y-A9H9-01A-21D-A38X-10	TCGA-2Y-A9H9-10A-01D-A38X-10	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1	5ab2f233-e5fe-41df-9cef-56c0fdd900d3	.	UPF3B	NM_023010	exon7	c.675_678del	p.225_226del	.	.	80.0	64.0	39.0	0.0	.	74	.	.	Atlas-Indel,Pindel
