Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLCH2	9651	hgsc.bcm.edu	hg19	1	2436408	2436408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PLCH2	NM_014638	exon22	c.G4007A	p.R1336Q	TTGTGCGGCGCTC	.	56.0	23.0	62.0	0.0	.	131	.	.	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	hg19	1	3329297	3329297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PRDM16	NM_022114	exon9	c.C2536T	p.R846W	CCGGCGCGGATGC	.	65.0	34.0	88.0	0.0	.	147	.	.	Atlas-SNP
NMNAT1	64802	hgsc.bcm.edu	hg19	1	10042386	10042386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	NMNAT1	NM_022787	exon5	c.G467T	p.G156V	TGTGTGGGGCAGA	.	84.0	27.0	92.0	0.0	.	18	.	.	Atlas-SNP
EMC1	23065	hgsc.bcm.edu	hg19	1	19568962	19568962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	.	NM_001271427	exon5	c.A386T	p.Q129L	AGTGCCTGGAAAC	.	53.0	31.0	72.0	0.0	.	.	.	.	Atlas-SNP
PTPRU	10076	hgsc.bcm.edu	hg19	1	29602163	29602163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PTPRU	NM_001195001	exon8	c.A1348T	p.I450F	TACACCATCAAGA	.	306.0	146.0	422.0	0.0	.	374	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34035031	34035031	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CSMD2	NM_052896	exon53	c.A8080T	p.R2694W	GCACCCTGGAGCC	.	67.0	21.0	101.0	0.0	.	946	.	.	Atlas-SNP
OMA1	115209	hgsc.bcm.edu	hg19	1	58971782	58971782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	OMA1	NM_145243	exon8	c.C1315T	p.H439Y	AAGGGTGTGTAGA	.	78.0	18.0	96.0	0.0	.	50	.	.	Atlas-SNP
IL23R	149233	hgsc.bcm.edu	hg19	1	67648612	67648612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	IL23R	NM_144701	exon4	c.T461A	p.I154K	CCTACATAGACAC	.	112.0	22.0	128.0	0.0	.	52	.	.	Atlas-SNP
CHIA	27159	hgsc.bcm.edu	hg19	1	111861228	111861228	+	Silent	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CHIA	NM_201653	exon9	c.T843A	p.I281I	TGGAATTGGTGCC	.	89.0	30.0	146.0	0.0	.	115	.	.	Atlas-SNP
HAX1	10456	hgsc.bcm.edu	hg19	1	154245239	154245239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	HAX1	NM_006118	exon1	c.C40A	p.P14T	GGCTTTCCTGGAC	.	131.0	28.0	115.0	0.0	.	25	.	.	Atlas-SNP
PYGO2	90780	hgsc.bcm.edu	hg19	1	154931785	154931785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PYGO2	NM_138300	exon3	c.G691A	p.G231S	CCTGACCAGGTCT	.	157.0	14.0	144.0	0.0	.	32	.	.	Atlas-SNP
OR10K2	391107	hgsc.bcm.edu	hg19	1	158390373	158390373	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	OR10K2	NM_001004476	exon1	c.T284A	p.L95Q	CAGCCCAGGAAAG	.	139.0	41.0	112.0	0.0	.	69	.	.	Atlas-SNP
TNFSF18	8995	hgsc.bcm.edu	hg19	1	173010529	173010529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	TNFSF18	NM_005092	exon3	c.C578T	p.A193V	GGATTTGCTAGTA	.	148.0	91.0	121.0	0.0	.	24	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182458311	182458311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	RGSL1	NM_001137669	exon8	c.A1691C	p.E564A	AGGTAGAGCTGAC	.	165.0	31.0	119.0	0.0	.	111	.	.	Atlas-SNP
TRIM11	81559	hgsc.bcm.edu	hg19	1	228588704	228588704	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	TRIM11	NM_145214	exon3	c.C696T	p.L232L	GCCCTCGAGCTCG	.	82.0	45.0	80.0	0.0	.	38	.	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241920625	241920625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	WDR64	NM_144625	exon14	c.T1781C	p.L594P	GGGAGCTGCCTGA	.	107.0	71.0	93.0	0.0	.	234	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247593020	247593020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	NLRP3	NM_004895	exon4	c.A2290G	p.T764A	TGTGAAACGCTCC	.	146.0	56.0	96.0	0.0	.	286	.	.	Atlas-SNP
REG1A	5967	hgsc.bcm.edu	hg19	2	79349980	79349980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	REG1A	NM_002909	exon5	c.A335G	p.H112R	GCTGGCACTGGAG	.	98.0	19.0	133.0	0.0	.	74	.	.	Atlas-SNP
SFTPB	6439	hgsc.bcm.edu	hg19	2	85888601	85888601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SFTPB	NM_198843	exon11	c.C1177T	p.L393F	ATCAAAGGTCGGG	.	38.0	7.0	46.0	0.0	.	49	.	.	Atlas-SNP
SFTPB	6439	hgsc.bcm.edu	hg19	2	85888602	85888602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SFTPB	NM_198843	exon11	c.C1176A	p.D392E	TCAAAGGTCGGGG	.	38.0	7.0	46.0	0.0	.	49	.	.	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	hg19	2	98349640	98349640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ZAP70	NM_001079	exon6	c.A755T	p.E252V	TGAAGGAGGCCTG	.	133.0	65.0	165.0	0.0	.	77	.	.	Atlas-SNP
TSN	7247	hgsc.bcm.edu	hg19	2	122522838	122522838	+	Silent	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	TSN	NM_004622	exon6	c.C582T	p.R194R	GAAGCGCTACGAC	.	82.0	38.0	108.0	0.0	.	31	.	.	Atlas-SNP
METTL5	29081	hgsc.bcm.edu	hg19	2	170672031	170672031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	METTL5	NM_014168	exon5	c.A497G	p.Q166R	TTCTTTTGAACAT	.	67.0	12.0	101.0	0.0	.	24	.	.	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	hg19	2	171239700	171239700	+	Splice_Site	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MYO3B	NM_138995	exon11	c.1185+1G>A	.	CCACAGGTAAGGG	.	81.0	7.0	95.0	0.0	.	320	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179424990	179424990	+	Silent	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	TTN	NM_001267550	exon326	c.T85869C	p.Y28623Y	AACACGATATTCA	.	103.0	53.0	157.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179489281	179489281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	TTN	NM_001267550	exon242	c.T44726A	p.L14909H	ATAACAAGTTTTC	.	167.0	16.0	209.0	0.0	.	18412	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198267481	198267481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	SF3B1,NS,carcinoma,0,10	SF3B1	NM_012433	exon14	c.A1876C	p.N626H	TTGTGTTACGGAC	.	118.0	13.0	102.0	0.0	.	1038	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210683912	210683912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	UNC80	NM_182587	exon12	c.G1889T	p.S630I	ACTACAGCTACCT	.	146.0	33.0	142.0	0.0	.	280	.	.	Atlas-SNP
CCDC108	255101	hgsc.bcm.edu	hg19	2	219875570	219875570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CCDC108	NM_194302	exon25	c.G4106A	p.R1369Q	AAGACCCGGGCAG	.	86.0	44.0	150.0	0.0	.	208	.	.	Atlas-SNP
SCG2	7857	hgsc.bcm.edu	hg19	2	224462660	224462660	+	Silent	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SCG2	NM_003469	exon2	c.T1341C	p.N447N	TTTCTGATTTGCT	.	45.0	23.0	55.0	0.0	.	99	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19384192	19384192	+	Silent	SNP	T	T	C	rs150723210		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	KCNH8	NM_144633	exon4	c.T556C	p.L186L	AACAAATTGAAAA	.	146.0	39.0	178.0	0.0	.	189	.	T|1.000;C|0.000	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	CTNNB1,NS,carcinoma,+1,2	CTNNB1	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	121.0	60.0	135.0	0.0	.	4904	.	.	Atlas-SNP
KIF15	56992	hgsc.bcm.edu	hg19	3	44841897	44841897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	KIF15	NM_020242	exon11	c.G1190T	p.G397V	CTTCAGGACAGAC	.	311.0	80.0	385.0	0.0	.	103	.	.	Atlas-SNP
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50225206	50225206	+	Silent	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SEMA3F	NM_004186	exon19	c.T2016C	p.D672D	CAGCGATCGTGGC	.	69.0	37.0	76.0	0.0	.	62	.	.	Atlas-SNP
GRM2	2912	hgsc.bcm.edu	hg19	3	51749599	51749599	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GRM2	NM_000839	exon4	c.G1810T	p.E604X	GGTCGGGAGCTCT	.	51.0	13.0	45.0	0.0	.	91	.	.	Atlas-SNP
OR5H2	79310	hgsc.bcm.edu	hg19	3	98001887	98001887	+	Silent	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	OR5H2	NM_001005482	exon1	c.T156C	p.A52A	GATTGCTCTTATC	.	103.0	49.0	124.0	0.0	.	63	.	.	Atlas-SNP
OR5K4	403278	hgsc.bcm.edu	hg19	3	98072899	98072899	+	Silent	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	OR5K4	NM_001005517	exon1	c.C202T	p.L68L	CTGGCTCTGATGG	.	61.0	18.0	108.0	0.0	.	75	.	.	Atlas-SNP
GNB4	59345	hgsc.bcm.edu	hg19	3	179131380	179131380	+	Silent	SNP	A	A	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GNB4	NM_021629	exon8	c.T519G	p.T173T	CTGGGCAGTTTCG	.	236.0	35.0	166.0	0.0	.	37	.	.	Atlas-SNP
MASP1	5648	hgsc.bcm.edu	hg19	3	186978538	186978538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MASP1	NM_139125	exon4	c.A538G	p.T180A	GGCAGGTCCTGTT	.	133.0	37.0	115.0	0.0	.	240	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13578590	13578590	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	.	NM_148894	exon25	c.C8910T	p.R2970R	TTTCTGGCGTTTT	.	78.0	43.0	74.0	0.0	.	.	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DSPP	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	245.0	19.0	293.0	0.0	.	174	.	.	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154519794	154519794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	KIAA0922	NM_001131007	exon21	c.G2176A	p.E726K	GCAAGAGAGTTAT	.	125.0	64.0	144.0	0.0	.	214	.	.	Atlas-SNP
RGS7BP	401190	hgsc.bcm.edu	hg19	5	63802553	63802553	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	RGS7BP	NM_001029875	exon1	c.G102A	p.E34E	TTGGGAGCGCAGG	.	295.0	126.0	318.0	1.0	.	32	.	.	Atlas-SNP
PRDM6	93166	hgsc.bcm.edu	hg19	5	122435525	122435525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PRDM6	NM_001136239	exon3	c.G769A	p.G257S	GTGCCCGGCCTGG	.	180.0	82.0	197.0	0.0	.	26	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127666336	127666336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	FBN2	NM_001999	exon33	c.G4274T	p.C1425F	TTTACACACTGAG	.	143.0	64.0	126.0	0.0	.	858	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140563472	140563472	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PCDHB16	NM_020957	exon1	c.T1338A	p.D446E	CAATGATAACGCC	.	108.0	43.0	128.0	0.0	.	159	.	.	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	hg19	5	140735666	140735666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	PCDHGA4_ENST00000571252,NS,carcinoma,0,2	PCDHGA4	NM_018917	exon1	c.A899G	p.D300G	GTGGGGATATAAC	.	106.0	9.0	101.0	2.0	.	150	.	.	Atlas-SNP
MAPK9	5601	hgsc.bcm.edu	hg19	5	179666988	179666988	+	Splice_Site	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MAPK9	NM_002752	exon11	c.997-1G>A	.	TGGTGGCTAAAAA	.	29.0	9.0	35.0	0.0	.	173	.	.	Atlas-SNP
DTNBP1	84062	hgsc.bcm.edu	hg19	6	15663083	15663083	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DTNBP1	NM_183040	exon1	c.C18T	p.R6R	CCGCTCGCGAAGG	.	132.0	35.0	97.0	0.0	.	56	.	.	Atlas-SNP
FAM65B	9750	hgsc.bcm.edu	hg19	6	24874014	24874014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	FAM65B	NM_015864	exon3	c.A115T	p.I39F	TTTCAATGAAGGA	.	127.0	75.0	88.0	0.0	.	134	.	.	Atlas-SNP
TNFRSF21	27242	hgsc.bcm.edu	hg19	6	47253741	47253741	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	TNFRSF21	NM_014452	exon2	c.C687T	p.I229I	TGGAAAGATGGCT	.	157.0	43.0	114.0	0.0	.	61	.	.	Atlas-SNP
ELOVL5	60481	hgsc.bcm.edu	hg19	6	53159142	53159142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ELOVL5	NM_001242831	exon3	c.C206T	p.S69F	GGCAAAGAGCTCT	.	260.0	66.0	191.0	0.0	.	25	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56484410	56484410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DST	NM_001723	exon23	c.A4422C	p.E1474D	AAGAGATTCTAAT	.	110.0	27.0	74.0	0.0	.	1427	.	.	Atlas-SNP
LGSN	51557	hgsc.bcm.edu	hg19	6	63995538	63995538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	LGSN	NM_016571	exon3	c.T284G	p.L95R	CCGTGGAGGTCTG	.	143.0	45.0	122.0	0.0	.	82	.	.	Atlas-SNP
LCA5	167691	hgsc.bcm.edu	hg19	6	80223048	80223048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	LCA5	NM_001122769	exon3	c.T601C	p.F201L	AGGAAAATTTTGT	.	121.0	50.0	133.0	0.0	.	71	.	.	Atlas-SNP
FRMD1	79981	hgsc.bcm.edu	hg19	6	168462619	168462619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	FRMD1	NM_024919	exon8	c.C913A	p.Q305K	GCTTCTGTGCTGC	.	150.0	56.0	132.0	0.0	.	52	.	.	Atlas-SNP
CDK13	8621	hgsc.bcm.edu	hg19	7	40133764	40133764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CDK13	NM_003718	exon14	c.A3724C	p.I1242L	ATGAGGATCTTGG	.	117.0	44.0	150.0	0.0	.	114	.	.	Atlas-SNP
ZC3HAV1	56829	hgsc.bcm.edu	hg19	7	138794071	138794071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ZC3HAV1	NM_024625	exon1	c.G7T	p.D3Y	CCGGGTCCGCCAT	.	67.0	6.0	73.0	0.0	.	75	.	.	Atlas-SNP
FASTK	10922	hgsc.bcm.edu	hg19	7	150776949	150776949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	FASTK,NS,carcinoma,0,1	FASTK	NM_006712	exon2	c.G143A	p.R48Q	GACAGCCGAGCAG	.	222.0	22.0	225.0	0.0	.	29	.	.	Atlas-SNP
STAR	6770	hgsc.bcm.edu	hg19	8	38006210	38006210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	STAR	NM_000349	exon2	c.C127T	p.P43S	GGGTGGGGCCCCC	.	19.0	8.0	46.0	0.0	.	29	.	.	Atlas-SNP
POLB	5423	hgsc.bcm.edu	hg19	8	42218856	42218856	+	Silent	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	POLB	NM_002690	exon10	c.C594A	p.P198P	CCATCCCAGCTTC	.	40.0	20.0	76.0	0.0	.	60	.	.	Atlas-SNP
CRISPLD1	83690	hgsc.bcm.edu	hg19	8	75929313	75929313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CRISPLD1	NM_031461	exon9	c.A961G	p.K321E	GATAGTAAAGCTA	.	301.0	48.0	211.0	0.0	.	94	.	.	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	hg19	8	95164135	95164135	+	Missense_Mutation	SNP	C	C	T	rs189236130	by1000genomes;alternate_allele	TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CDH17	NM_004063	exon13	c.G1757A	p.G586D	ACATTGCCCACTT	.	109.0	79.0	89.0	0.0	.	119	.	C|1.000;A|0.000	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	376287	376287	+	Silent	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DOCK8	NM_203447	exon19	c.T2187C	p.V729V	AGCTGTTTCTTCT	.	91.0	45.0	106.0	0.0	.	401	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5921657	5921657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	KIAA2026	NM_001017969	exon8	c.A4339G	p.K1447E	AACTTTTTGTGAT	.	91.0	19.0	122.0	0.0	.	231	.	.	Atlas-SNP
AQP7	364	hgsc.bcm.edu	hg19	9	33385103	33385103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	AQP7,colon,carcinoma,0,1	AQP7	NM_001170	exon8	c.C929T	p.T310M	GAGATCGTGGGTT	.	49.0	3.0	52.0	0.0	.	58	.	.	Atlas-SNP
GADD45G	10912	hgsc.bcm.edu	hg19	9	92220779	92220779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GADD45G	NM_006705	exon3	c.A353C	p.H118P	ACCTGCACTGCAT	.	74.0	36.0	86.0	0.0	.	12	.	.	Atlas-SNP
ZNF483	158399	hgsc.bcm.edu	hg19	9	114304529	114304529	+	Silent	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ZNF483	NM_133464	exon6	c.T1314C	p.T438T	AAAAACTCATAAA	.	78.0	15.0	99.0	0.0	.	78	.	.	Atlas-SNP
RAB14	51552	hgsc.bcm.edu	hg19	9	123943729	123943729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	RAB14	NM_016322	exon8	c.A593G	p.Q198R	CCTCCCTGCGGGG	.	134.0	51.0	177.0	0.0	.	14	.	.	Atlas-SNP
ANGPTL2	23452	hgsc.bcm.edu	hg19	9	129854065	129854065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ANGPTL2	NM_012098	exon4	c.A1166C	p.E389A	TCGCTCTCAGGTT	.	97.0	7.0	114.0	0.0	.	46	.	.	Atlas-SNP
C9orf163	158055	hgsc.bcm.edu	hg19	9	139379108	139379108	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	C9orf163	NM_152571	exon1	c.G208C	p.G70R	AGGGAGGGGGTGA	.	87.0	44.0	117.0	0.0	.	9	.	.	Atlas-SNP
ARMC3	219681	hgsc.bcm.edu	hg19	10	23292182	23292182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ARMC3	NM_173081	exon13	c.G1570C	p.D524H	GCTTTAGATATCC	.	144.0	56.0	163.0	0.0	.	102	.	.	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	hg19	10	101120654	101120654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CNNM1	NM_020348	exon3	c.T1780C	p.F594L	TCCTTGTTTAAGC	.	75.0	34.0	55.0	0.0	.	101	.	.	Atlas-SNP
PCGF6	84108	hgsc.bcm.edu	hg19	10	105110554	105110554	+	Silent	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	RNF134,right_lower_lobe,carcinoma,0,2	PCGF6	NM_001011663	exon1	c.G270A	p.L90L	CTCCTCCAGCTCC	.	74.0	8.0	76.0	0.0	.	23	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6643123	6643123	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DCHS1	NM_003737	exon21	c.G9784C	p.A3262P	GAGCAGCCAGAGG	.	69.0	12.0	59.0	0.0	.	277	.	.	Atlas-SNP
OR2AG1	144125	hgsc.bcm.edu	hg19	11	6806964	6806964	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	OR2AG1	NM_001004489	exon1	c.G696A	p.E232E	AAATGAGGGGAGG	.	67.0	31.0	84.0	0.0	.	57	.	.	Atlas-SNP
ROM1	6094	hgsc.bcm.edu	hg19	11	62381849	62381849	+	Missense_Mutation	SNP	C	C	G	rs374111556		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ROM1	NM_000327	exon2	c.C710G	p.P237R	CCCACCCCCTGTT	.	53.0	15.0	84.0	0.0	.	32	.	.	Atlas-SNP
B3GAT3	26229	hgsc.bcm.edu	hg19	11	62389402	62389402	+	Silent	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	B3GAT3	NM_012200	exon1	c.G18A	p.K6K	CACGTTCTTCAGC	.	177.0	9.0	216.0	0.0	.	24	.	.	Atlas-SNP
ACER3	55331	hgsc.bcm.edu	hg19	11	76727823	76727823	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ACER3	NM_018367	exon9	c.G704C	p.S235T	TTTTCAGGTAGGA	.	66.0	19.0	82.0	0.0	.	19	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117374731	117374731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DSCAML1	NM_020693	exon11	c.G2368A	p.G790R	GGTTCCCGCTCCC	.	56.0	13.0	72.0	0.0	.	286	.	.	Atlas-SNP
OR8B4	283162	hgsc.bcm.edu	hg19	11	124294237	124294237	+	Silent	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	OR8B4	NM_001005196	exon1	c.G531T	p.L177L	GTCACACAGATAA	.	90.0	52.0	138.0	0.0	.	60	.	.	Atlas-SNP
LEPREL2	10536	hgsc.bcm.edu	hg19	12	6946251	6946251	+	Splice_Site	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	LEPREL2	NM_014262	exon10	c.1559+1G>A	.	GCGCAGGTGAGCA	.	15.0	12.0	23.0	0.0	.	87	.	.	Atlas-SNP
C12orf77	196415	hgsc.bcm.edu	hg19	12	25148920	25148920	+	Silent	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	C12orf77	NM_001101339	exon3	c.A228T	p.R76R	CATCCATCGTATG	.	143.0	75.0	134.0	0.0	.	18	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46231189	46231189	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ARID2	NM_152641	exon9	c.T1109G	p.L370X	GATTTTTAAAGAT	.	105.0	53.0	131.0	0.0	.	311	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49445845	49445845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MLL2	NM_003482	exon10	c.G1621A	p.E541K	ATGCTTCAGGTGG	.	120.0	23.0	135.0	0.0	.	1173	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57562953	57562953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	LRP1	NM_002332	exon20	c.C3026A	p.A1009D	ACGAAGCCGGCTG	.	65.0	41.0	57.0	0.0	.	428	.	.	Atlas-SNP
P2RX7	5027	hgsc.bcm.edu	hg19	12	121622253	121622253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	P2RX7	NM_002562	exon13	c.G1436A	p.C479Y	GCCAGTGTGGAAG	.	70.0	11.0	52.0	0.0	.	53	.	.	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	hg19	12	123057714	123057714	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	KNTC1,NS,carcinoma,0,1	KNTC1	NM_014708	exon26	c.G2165C	p.R722P	TGTTCCGAATGTT	.	143.0	34.0	155.0	0.0	.	182	.	.	Atlas-SNP
FOXO1	2308	hgsc.bcm.edu	hg19	13	41134803	41134803	+	Silent	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	FOXO1	NM_002015	exon2	c.A825G	p.A275A	GAGAGATGCTTTC	.	101.0	25.0	129.0	0.0	.	110	.	.	Atlas-SNP
PCDH20	64881	hgsc.bcm.edu	hg19	13	61985776	61985776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PCDH20	NM_022843	exon2	c.G2456A	p.R819H	AGTAAGCGATGGA	.	85.0	14.0	98.0	0.0	.	265	.	.	Atlas-SNP
PRKCH	5583	hgsc.bcm.edu	hg19	14	61924300	61924300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PRKCH	NM_006255	exon9	c.A1181T	p.D394V	TGCAGGATGATGA	.	109.0	44.0	98.0	0.0	.	89	.	.	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63246590	63246590	+	Silent	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	KCNH5	NM_139318	exon10	c.T1875C	p.H625H	ACATGCATGGGCA	.	152.0	74.0	155.0	0.0	.	320	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75514207	75514207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MLH3	NM_014381	exon2	c.C2152G	p.P718A	ACCAGGGGAAAGA	.	119.0	31.0	108.0	0.0	.	200	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105416987	105416987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	NM_138420	exon7	c.C4801G	p.P1601A	GCTTGGGGCCCTT	.	103.0	7.0	102.0	2.0	.	719	.	.	Atlas-SNP
ZFP106	64397	hgsc.bcm.edu	hg19	15	42743691	42743691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ZFP106	NM_022473	exon2	c.A710T	p.Y237F	CCACTGTAATTCC	.	95.0	24.0	118.0	0.0	.	117	.	.	Atlas-SNP
ZNF609	23060	hgsc.bcm.edu	hg19	15	64967423	64967423	+	Silent	SNP	T	T	C	rs368660859		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ZNF609	NM_015042	exon4	c.T2370C	p.A790A	CAAGGCTGAAGCC	.	80.0	44.0	92.0	0.0	.	106	.	.	Atlas-SNP
CHRNA5	1138	hgsc.bcm.edu	hg19	15	78873234	78873234	+	Missense_Mutation	SNP	G	G	A	rs202057419		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CHRNA5	NM_000745	exon2	c.G188A	p.R63H	GGGTTCGTCCTGT	.	65.0	25.0	100.0	0.0	.	48	.	.	Atlas-SNP
MPV17L	255027	hgsc.bcm.edu	hg19	16	15501839	15501839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MPV17L	NM_173803	exon3	c.G390A	p.W130X	ACGCTGGAGTCTG	.	118.0	48.0	90.0	0.0	.	21	.	.	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	hg19	16	16177302	16177302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ABCC1	NM_004996	exon17	c.T2195A	p.L732Q	GTCAGCTGGAGGA	.	134.0	40.0	141.0	0.0	.	156	.	.	Atlas-SNP
GPT2	84706	hgsc.bcm.edu	hg19	16	46956209	46956209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GPT2	NM_133443	exon9	c.G1093T	p.G365C	ATCAAGGGCCAGC	.	50.0	17.0	59.0	0.0	.	40	.	.	Atlas-SNP
CYLD	1540	hgsc.bcm.edu	hg19	16	50816274	50816274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CYLD	NM_015247	exon12	c.A1723C	p.T575P	GAAAATACTCCAC	.	146.0	63.0	141.0	0.0	.	150	.	.	Atlas-SNP
CHST5	23563	hgsc.bcm.edu	hg19	16	75563641	75563641	+	Silent	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CHST5	NM_024533	exon3	c.G642A	p.A214A	GTTGAGCGCGGGG	.	59.0	21.0	67.0	0.0	.	47	.	.	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8141726	8141726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CTC1	NM_025099	exon3	c.G419T	p.G140V	AGGACGCCAGTGT	.	104.0	50.0	111.0	0.0	.	75	.	.	Atlas-SNP
STX8	9482	hgsc.bcm.edu	hg19	17	9460750	9460750	+	Splice_Site	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	STX8	NM_004853	exon4	c.212+1G>A	.	TGGATACATCTGA	.	72.0	32.0	92.0	0.0	.	28	.	.	Atlas-SNP
ULK2	9706	hgsc.bcm.edu	hg19	17	19699421	19699421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ULK2	NM_001142610	exon19	c.G1984A	p.A662T	ACACTGCCTTGCT	.	104.0	15.0	100.0	0.0	.	142	.	.	Atlas-SNP
AKAP1	8165	hgsc.bcm.edu	hg19	17	55183730	55183730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	AKAP1	NM_001242902	exon3	c.G905A	p.G302E	TCGAGGGAGAACT	.	98.0	41.0	102.0	0.0	.	73	.	.	Atlas-SNP
MARCH10	162333	hgsc.bcm.edu	hg19	17	60821843	60821843	+	Silent	SNP	C	C	A	rs199898215	by1000genomes;alternate_allele	TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	MARCH10,NS,carcinoma,0,1	MARCH10	NM_001100875	exon5	c.G429T	p.L143L	TCTCCTCAGGTTT	.	73.0	25.0	83.0	0.0	.	102	.	C|1.000;G|0.000	Atlas-SNP
MFSD11	79157	hgsc.bcm.edu	hg19	17	74737074	74737074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MFSD11	NM_001242536	exon4	c.A188G	p.N63S	CTTCAAATTTGAT	.	77.0	27.0	73.0	0.0	.	47	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22805711	22805711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ZNF521	NM_015461	exon4	c.G2171T	p.C724F	AGGGTGCAGCGAA	.	156.0	61.0	136.0	0.0	.	269	.	.	Atlas-SNP
BOD1L2	284257	hgsc.bcm.edu	hg19	18	54814759	54814759	+	Silent	SNP	G	G	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	BOD1L2	NM_001257964	exon1	c.G216T	p.L72L	AAACCTGAGCCAG	.	31.0	8.0	25.0	0.0	.	1	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	55833084	55833084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	NEDD4L	NM_015277	exon2	c.T113A	p.F38Y	ACATCTTTGGAGC	.	88.0	11.0	116.0	0.0	.	126	.	.	Atlas-SNP
SERPINB13	5275	hgsc.bcm.edu	hg19	18	61260116	61260116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SERPINB13	NM_012397	exon5	c.A383G	p.Y128C	AATATTATCATGC	.	97.0	37.0	88.0	0.0	.	51	.	.	Atlas-SNP
CDC37	11140	hgsc.bcm.edu	hg19	19	10514108	10514108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CDC37	NM_007065	exon1	c.A48C	p.E16D	CTCGTCTTCATCA	.	43.0	19.0	46.0	0.0	.	32	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17004084	17004084	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CPAMD8	NM_015692	exon42	c.C5634T	p.S1878S	GAACGGGCTGGCG	.	57.0	11.0	64.0	0.0	.	192	.	.	Atlas-SNP
GATAD2A	54815	hgsc.bcm.edu	hg19	19	19612126	19612126	+	Silent	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GATAD2A	NM_017660	exon9	c.G1401A	p.Q467Q	GCTGCAGCAGGAA	.	146.0	58.0	159.0	0.0	.	81	.	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31767550	31767550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	TSHZ3_ENST00000240587,right_upper_lobe,carcinoma,0,2	TSHZ3	NM_020856	exon2	c.T3149C	p.F1050S	CTGGCAAAGGTCC	.	185.0	78.0	228.0	0.0	.	549	.	.	Atlas-SNP
SUPT5H	6829	hgsc.bcm.edu	hg19	19	39961060	39961060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SUPT5H	NM_003169	exon17	c.C1574T	p.A525V	AGACAGCATCAGG	.	105.0	38.0	119.0	0.0	.	119	.	.	Atlas-SNP
LENG8	114823	hgsc.bcm.edu	hg19	19	54964820	54964820	+	Silent	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	LENG8	NM_052925	exon5	c.A411G	p.Q137Q	ACACCAAGGGACT	.	23.0	4.0	21.0	0.0	.	73	.	.	Atlas-SNP
BTBD3	22903	hgsc.bcm.edu	hg19	20	11899220	11899220	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	BTBD3	NM_014962	exon1	c.G297A	p.W99X	AAACTGGCAGGGT	.	182.0	88.0	213.0	0.0	.	92	.	.	Atlas-SNP
E2F1	1869	hgsc.bcm.edu	hg19	20	32265105	32265105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	E2F1	NM_005225	exon6	c.G872T	p.G291V	ATCGGGCCTTGTT	.	104.0	19.0	112.0	0.0	.	41	.	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	hg19	20	35422173	35422173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	SOGA1	NM_080627	exon14	c.A4312G	p.K1438E	CATACTTGGGGGA	.	22.0	10.0	27.0	0.0	.	136	.	.	Atlas-SNP
BMP7	655	hgsc.bcm.edu	hg19	20	55746127	55746127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	BMP7	NM_001719	exon7	c.G1184T	p.C395F	GCACAGCAGGGCT	.	99.0	32.0	124.0	0.0	.	60	.	.	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	hg19	22	17446135	17446135	+	Silent	SNP	T	T	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GAB4	NM_001037814	exon7	c.A1312C	p.R438R	TGTTTCTCAGGTT	.	116.0	52.0	121.0	0.0	.	95	.	.	Atlas-SNP
BPIFC	254240	hgsc.bcm.edu	hg19	22	32833794	32833794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	.	NM_174932	exon7	c.A700T	p.I234F	AACTGATTAGGGA	.	58.0	17.0	64.0	0.0	.	.	.	.	Atlas-SNP
MPST	4357	hgsc.bcm.edu	hg19	22	37425290	37425290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MPST	NM_021126	exon3	c.A689G	p.N230S	CCGTGAACATCCC	.	128.0	56.0	111.0	0.0	.	14	.	.	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	hg19	22	40140015	40140015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ENTHD1	NM_152512	exon7	c.C1493G	p.S498C	GAATCAGAGTTAT	.	118.0	52.0	134.0	0.0	.	83	.	.	Atlas-SNP
CXorf38	159013	hgsc.bcm.edu	hg19	X	40506585	40506585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CXorf38	NM_144970	exon1	c.G188A	p.G63D	CGTGAGCCGCCGC	.	10.0	6.0	23.0	0.0	.	29	.	.	Atlas-SNP
PDZD4	57595	hgsc.bcm.edu	hg19	X	153068845	153068845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	PDZD4	NM_032512	exon8	c.G2273A	p.R758Q	TAGACCCGCTTGC	.	21.0	15.0	32.0	0.0	.	67	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13722	13722	+	Silent	SNP	A	A	G	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	.	ENST00000361567	exon1	c.A1386G	p.L462L	AAGCCTATTCGCA	.	35.0	33.0	24.0	0.0	.	.	.	.	Atlas-SNP
CHEK1	1111	hgsc.bcm.edu	hg19	11	125496682	125496683	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	CHEK1	NM_001114122	exon2	c.19_20insA	p.E7fs	.	.	159.0	26.0	155.0	0.0	.	44	.	.	Atlas-Indel,Pindel
DENND5B	160518	hgsc.bcm.edu	hg19	12	31633069	31633069	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	DENND5B	NM_144973	exon3	c.359delA	p.Y120fs	.	.	80.0	36.0	104.0	0.0	.	114	.	.	Atlas-Indel,Pindel
AIM1L	55057	hgsc.bcm.edu	hg19	1	26671856	26671856	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	AIM1L	NM_001039775	exon2	c.1294delA	p.S432fs	.	.	53.0	23.0	54.0	0.0	.	98	.	.	Atlas-Indel,Pindel
MRGPRF	116535	hgsc.bcm.edu	hg19	11	68772841	68772841	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MRGPRF	NM_001098515	exon3	c.938delC	p.A313fs	.	.	28.0	13.0	48.0	0.0	.	22	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74279213	74279215	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ALB	NM_000477	exon8	c.919_921del	p.307_307del	.	.	128.0	30.0	154.0	0.0	.	132	.	.	Atlas-Indel,Pindel
GIGYF1	64599	hgsc.bcm.edu	hg19	7	100284298	100284298	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	GIGYF1	NM_022574	exon7	c.669delC	p.G223fs	.	.	63.0	34.0	57.0	0.0	.	113	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74283862	74283863	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	ALB	NM_000477	exon12	c.1485_1486del	p.495_496del	.	.	67.0	13.0	98.0	0.0	.	132	.	.	Pindel
UMODL1	89766	hgsc.bcm.edu	hg19	21	43531290	43531364	+	In_Frame_Del	DEL	CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA	CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA	CCAGCCAGGGGAGCCCCAGCCAGGGGAGCCTCAGACAGGAGAGTACCAGCCAGGCGAGCCCCAGCCAGAGGAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	UMODL1	NM_173568	exon11	c.1957_2031del	p.653_677del	.	.	76.0	16.0	66.0	0.0	.	186	.	.	Pindel
MUC4	4585	hgsc.bcm.edu	hg19	3	195506007	195506102	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	-	novel		TCGA-3K-AAZ8-01A-12D-A38X-10	TCGA-3K-AAZ8-10A-01D-A38X-10	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	GGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATACTGAGGAAAGGCTGGTGACAGGAAGAGGGGTGGCCTGACCTGTGGATGCAGAGGAAGTGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ca7f5e36-bbb3-44aa-b0c7-3f170a2bbc0f	c70e868a-ba0a-4b90-ad4d-d61ed7b34ecf	.	MUC4	NM_018406	exon2	c.12350_12445del	p.4117_4149del	.	.	309.0	25.0	225.0	0.0	.	1505	.	.	Pindel
