Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DVL1	1855	hgsc.bcm.edu	hg19	1	1273715	1273715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DVL1	NM_004421	exon13	c.C1366T	p.R456W	TGTGCCGCAGGAA	.	67.0	27.0	88.0	0.0	.	36	.	.	Atlas-SNP
C1orf174	339448	hgsc.bcm.edu	hg19	1	3807306	3807306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C1orf174	NM_207356	exon3	c.G445A	p.G149R	CTGCTCCGGACCC	.	93.0	38.0	123.0	0.0	.	20	.	.	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	hg19	1	6202186	6202186	+	Splice_Site	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHD5	NM_015557	exon16	c.2436+2T>C	.	GCCCTCACCTTCA	.	120.0	43.0	122.0	0.0	.	267	.	.	Atlas-SNP
PLEKHG5	57449	hgsc.bcm.edu	hg19	1	6531575	6531575	+	Silent	SNP	G	G	A	rs139904931	bycluster;byfrequency;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PLEKHG5_ENST00000377748,NS,carcinoma,0,1	PLEKHG5	NM_001265592	exon13	c.C1491T	p.P497P	GTCCCCGGGCTGT	.	140.0	55.0	181.0	0.0	.	66	.	G|0.997;C|0.003	Atlas-SNP
ZBTB48	3104	hgsc.bcm.edu	hg19	1	6642238	6642238	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZBTB48	NM_005341	exon3	c.C811T	p.L271L	CCAGCCCTGAGCG	.	164.0	59.0	200.0	0.0	.	33	.	.	Atlas-SNP
DNAJC11	55735	hgsc.bcm.edu	hg19	1	6697322	6697322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAJC11	NM_018198	exon14	c.A1460G	p.D487G	GTCACGTCAATCA	.	107.0	40.0	126.0	0.0	.	93	.	.	Atlas-SNP
PER3	8863	hgsc.bcm.edu	hg19	1	7854025	7854025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PER3	NM_016831	exon5	c.C598T	p.R200W	GCTGCACGGTATG	.	134.0	64.0	111.0	0.0	.	95	.	.	Atlas-SNP
PER3	8863	hgsc.bcm.edu	hg19	1	7887318	7887318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PER3	NM_016831	exon17	c.C2305T	p.P769S	GCACAGCCCTGCT	.	160.0	68.0	150.0	0.0	.	95	.	.	Atlas-SNP
CLSTN1	22883	hgsc.bcm.edu	hg19	1	9795966	9795966	+	Missense_Mutation	SNP	C	C	T	rs201640412	bycluster	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CLSTN1,colon,carcinoma,0,1	CLSTN1	NM_001009566	exon12	c.G1711A	p.E571K	TGTCTTCGAGGAC	.	96.0	31.0	83.0	0.0	.	88	.	C|0.999;T|0.001	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	hg19	1	10713986	10713986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CASZ1	NM_001079843	exon11	c.C2128A	p.L710M	CGCCCAGCAGCGA	.	112.0	46.0	108.0	0.0	.	150	.	.	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	hg19	1	11009719	11009719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C1orf127	NM_001170754	exon11	c.C1252T	p.R418W	GGTCCCGAGAAAG	.	118.0	45.0	132.0	0.0	.	134	.	.	Atlas-SNP
EXOSC10	5394	hgsc.bcm.edu	hg19	1	11151567	11151567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EXOSC10	NM_001001998	exon4	c.T460C	p.S154P	AGCTGGACACTAC	.	132.0	38.0	123.0	0.0	.	59	.	.	Atlas-SNP
MIIP	60672	hgsc.bcm.edu	hg19	1	12082888	12082888	+	Splice_Site	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MIIP	NM_021933	exon4	c.463-2A>G	.	TTCCTCAGCCCAG	.	57.0	19.0	77.0	0.0	.	34	.	.	Atlas-SNP
TMEM51	55092	hgsc.bcm.edu	hg19	1	15541641	15541641	+	Missense_Mutation	SNP	G	G	T	rs147062114		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM51	NM_018022	exon2	c.G58T	p.G20W	GGCCTGGGGATGC	.	65.0	29.0	44.0	0.0	.	28	.	G|1.000;T|0.000	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	hg19	1	15702219	15702219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FHAD1	NM_052929	exon27	c.T3632A	p.I1211N	TAGAGATCCTAGC	.	93.0	34.0	117.0	0.0	.	78	.	.	Atlas-SNP
CLCNKB	1188	hgsc.bcm.edu	hg19	1	16377520	16377520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CLCNKB	NM_000085	exon12	c.C1204A	p.L402I	GGGACCCTTGCCT	.	132.0	59.0	142.0	0.0	.	50	.	.	Atlas-SNP
ATP13A2	23400	hgsc.bcm.edu	hg19	1	17328825	17328825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATP13A2	NM_022089	exon7	c.C601T	p.R201C	CATGGCGGGAGCG	.	342.0	156.0	334.0	0.0	.	85	.	.	Atlas-SNP
PADI2	11240	hgsc.bcm.edu	hg19	1	17418998	17418998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PADI2	NM_007365	exon6	c.G560T	p.R187L	TTGGTCCGCAGGA	.	111.0	14.0	119.0	0.0	.	72	.	.	Atlas-SNP
ARHGEF10L	55160	hgsc.bcm.edu	hg19	1	17983183	17983183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGEF10L	NM_018125	exon25	c.C2840A	p.A947D	CCCTTGCTGCTTA	.	151.0	38.0	161.0	0.0	.	219	.	.	Atlas-SNP
CDA	978	hgsc.bcm.edu	hg19	1	20931423	20931423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDA	NM_001785	exon2	c.T157C	p.C53R	TCAGGGTGCAACA	.	124.0	39.0	142.0	0.0	.	19	.	.	Atlas-SNP
EPHA8	2046	hgsc.bcm.edu	hg19	1	22928128	22928128	+	Missense_Mutation	SNP	G	G	A	rs139543017		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPHA8	NM_020526	exon17	c.G2912A	p.R971H	ACGTGCGCGCCCT	.	168.0	66.0	213.0	0.0	.	221	.	G|1.000;A|0.000	Atlas-SNP
C1QA	712	hgsc.bcm.edu	hg19	1	22965607	22965607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C1QA	NM_015991	exon3	c.G445A	p.G149S	CACTCCGGCCGAT	.	201.0	82.0	232.0	0.0	.	31	.	.	Atlas-SNP
EPHB2	2048	hgsc.bcm.edu	hg19	1	23191427	23191427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPHB2	NM_004442	exon5	c.T1025A	p.L342Q	TCATGCTGGAGTG	.	214.0	84.0	174.0	0.0	.	257	.	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	hg19	1	23763464	23763464	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ASAP3	NM_017707	exon15	c.C1416T	p.G472G	GCGCACGCCCAGT	.	129.0	52.0	116.0	0.0	.	65	.	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	hg19	1	24995828	24995828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SRRM1,NS,carcinoma,0,1	SRRM1	NM_005839	exon14	c.C1954T	p.R652C	AAGAGACGTTCAC	.	222.0	84.0	222.0	0.0	.	81	.	.	Atlas-SNP
CEP85	64793	hgsc.bcm.edu	hg19	1	26586251	26586251	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CEP85	NM_022778	exon7	c.G1299A	p.A433A	AGTGGCGTTGCAG	.	223.0	69.0	218.0	0.0	.	61	.	.	Atlas-SNP
UBXN11	91544	hgsc.bcm.edu	hg19	1	26609381	26609381	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UBXN11	NM_183008	exon14	c.G1125A	p.T375T	GGTGGGCGTCTCC	.	96.0	23.0	99.0	0.0	.	54	.	.	Atlas-SNP
FCN3	8547	hgsc.bcm.edu	hg19	1	27697179	27697179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FCN3	NM_003665	exon7	c.A566T	p.N189I	GTACGGTTACCAT	.	106.0	48.0	168.0	0.0	.	30	.	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	hg19	1	27876444	27876444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AHDC1	NM_001029882	exon6	c.G2183A	p.R728Q	TCCCCCCGGCCCC	.	174.0	65.0	250.0	0.0	.	98	.	.	Atlas-SNP
SESN2	83667	hgsc.bcm.edu	hg19	1	28598852	28598852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SESN2	NM_031459	exon4	c.C412A	p.Q138K	TTTCTGCAGACTG	.	83.0	33.0	73.0	0.0	.	51	.	.	Atlas-SNP
GMEB1	10691	hgsc.bcm.edu	hg19	1	29010172	29010172	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GMEB1	NM_006582	exon2	c.A48G	p.V16V	TGTGGTACCTACT	.	131.0	38.0	154.0	0.0	.	28	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34083155	34083155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CSMD2	NM_052896	exon38	c.C5770T	p.R1924C	AGTAGCGCTCGCC	.	81.0	46.0	97.0	0.0	.	946	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34090759	34090759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CSMD2	NM_052896	exon34	c.C5272T	p.R1758C	CGAAGCGGACGAT	.	168.0	70.0	200.0	0.0	.	946	.	.	Atlas-SNP
GJB4	127534	hgsc.bcm.edu	hg19	1	35227148	35227148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	GJB4,NS,haematopoietic_neoplasm,0,1	GJB4	NM_153212	exon2	c.G293A	p.R98H	CCTACCGCGAGGA	.	75.0	28.0	90.0	1.0	.	51	.	.	Atlas-SNP
GJA4	2701	hgsc.bcm.edu	hg19	1	35260244	35260244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GJA4	NM_002060	exon2	c.C430T	p.R144C	GATGGTCGCCTGC	.	45.0	13.0	43.0	0.0	.	25	.	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	hg19	1	36521336	36521336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_024852	exon19	c.A2573G	p.Y858C	CAATGTACTTCGC	.	100.0	6.0	74.0	0.0	.	.	.	.	Atlas-SNP
OSCP1	127700	hgsc.bcm.edu	hg19	1	36915910	36915910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OSCP1	NM_145047	exon1	c.C61A	p.L21I	GGTCGAGGATGTA	.	327.0	105.0	296.0	0.0	.	48	.	.	Atlas-SNP
RHBDL2	54933	hgsc.bcm.edu	hg19	1	39352294	39352294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RHBDL2	NM_017821	exon8	c.T794C	p.F265S	CAGCTAAACACCG	.	99.0	37.0	108.0	0.0	.	28	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39827077	39827077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MACF1	NM_012090	exon45	c.A6313G	p.T2105A	GAGGCCACCCGTG	.	242.0	68.0	249.0	0.0	.	909	.	.	Atlas-SNP
COL9A2	1298	hgsc.bcm.edu	hg19	1	40771858	40771858	+	Missense_Mutation	SNP	C	C	G	rs199502479		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL9A2	NM_001852	exon20	c.G1010C	p.G337A	GGCACACCCTGCA	.	68.0	34.0	60.0	0.0	.	63	.	C|0.999;G|0.001	Atlas-SNP
TMEM125	128218	hgsc.bcm.edu	hg19	1	43738760	43738760	+	Missense_Mutation	SNP	G	G	C	rs143350378	bycluster;byfrequency;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM125	NM_144626	exon4	c.G367C	p.V123L	GGCCTCGTGCTGC	.	81.0	32.0	81.0	0.0	.	18	.	G|0.997;A|0.003	Atlas-SNP
TIE1	7075	hgsc.bcm.edu	hg19	1	43772515	43772515	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TIE1	NM_005424	exon4	c.C489A	p.S163S	AGGATCCTACTTC	.	35.0	16.0	57.0	0.0	.	132	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43895374	43895374	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SZT2	NM_015284	exon28	c.C3996T	p.S1332S	ATTCAGCATAGAG	.	91.0	36.0	81.0	0.0	.	383	.	.	Atlas-SNP
TOE1	114034	hgsc.bcm.edu	hg19	1	45806886	45806886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TOE1	NM_025077	exon2	c.C194T	p.T65M	TGGACACGGTGAG	.	118.0	8.0	113.0	0.0	.	27	.	.	Atlas-SNP
MMACHC	25974	hgsc.bcm.edu	hg19	1	45974679	45974679	+	Missense_Mutation	SNP	G	G	A	rs202189863		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MMACHC	NM_015506	exon4	c.G641A	p.R214H	AGGAGCGCTACTC	.	111.0	45.0	112.0	0.0	.	22	.	G|0.999;A|0.001	Atlas-SNP
SLC5A9	200010	hgsc.bcm.edu	hg19	1	48696305	48696305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC5A9	NM_001135181	exon6	c.A613T	p.M205L	ATCCAGATGGCAT	.	73.0	32.0	81.0	0.0	.	82	.	.	Atlas-SNP
CDKN2C	1031	hgsc.bcm.edu	hg19	1	51439649	51439649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CDKN2C,NS,carcinoma,0,1	CDKN2C	NM_001262	exon3	c.G214A	p.A72T	GGTTTCGCTGTCA	.	126.0	41.0	97.0	0.0	.	24	.	.	Atlas-SNP
CPT2	1376	hgsc.bcm.edu	hg19	1	53679110	53679110	+	Missense_Mutation	SNP	C	C	T	rs201913567	by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CPT2	NM_000098	exon5	c.C1820T	p.S607F	TGGTCTCTGATGG	.	151.0	64.0	156.0	0.0	.	34	.	C|1.000;G|0.000	Atlas-SNP
DIRAS3	9077	hgsc.bcm.edu	hg19	1	68512696	68512696	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DIRAS3	NM_004675	exon2	c.C285T	p.G95G	GCCGTCGCCACTC	.	137.0	70.0	110.0	0.0	.	31	.	.	Atlas-SNP
RPE65	6121	hgsc.bcm.edu	hg19	1	68905283	68905283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RPE65	NM_000329	exon7	c.T686C	p.F229S	CAGGGGAATTGTA	.	75.0	36.0	84.0	0.0	.	87	.	.	Atlas-SNP
LRRC40	55631	hgsc.bcm.edu	hg19	1	70614318	70614318	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRC40	NM_017768	exon14	c.A1555T	p.T519S	CAAGTGTGAAGAT	.	86.0	32.0	111.0	0.0	.	66	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71437417	71437417	+	Splice_Site	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTGER3	NM_198719	exon5	c.1170-1G>A	.	CATTATCTGTTAG	.	566.0	213.0	606.0	0.0	.	246	.	.	Atlas-SNP
ST6GALNAC3	256435	hgsc.bcm.edu	hg19	1	77094388	77094388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ST6GALNAC3	NM_152996	exon5	c.C815T	p.A272V	AACATGCCCCATA	.	87.0	39.0	77.0	0.0	.	71	.	.	Atlas-SNP
RBMXL1	494115	hgsc.bcm.edu	hg19	1	89449438	89449438	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001162536	exon3	c.T72C	p.L24L	TGTTTCAAGAGCT	.	291.0	35.0	337.0	0.0	.	.	.	.	Atlas-SNP
CDC7	8317	hgsc.bcm.edu	hg19	1	91977470	91977470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDC7	NM_001134419	exon6	c.C562T	p.R188C	AATAGGCGCCTGA	.	433.0	24.0	391.0	0.0	.	74	.	.	Atlas-SNP
SLC30A7	148867	hgsc.bcm.edu	hg19	1	101379226	101379226	+	Silent	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC30A7	NM_133496	exon6	c.A519T	p.G173G	CCACGGACACAGT	.	197.0	90.0	188.0	0.0	.	33	.	.	Atlas-SNP
NTNG1	22854	hgsc.bcm.edu	hg19	1	108023282	108023282	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NTNG1	NM_001113226	exon8	c.C1440T	p.C480C	GACGTGCCACAAC	.	99.0	42.0	100.0	0.0	.	274	.	.	Atlas-SNP
FAM102B	284611	hgsc.bcm.edu	hg19	1	109171126	109171126	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM102B	NM_001010883	exon8	c.T762C	p.C254C	GCCATGTGATGAA	.	167.0	68.0	139.0	0.0	.	49	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109801459	109801459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CELSR2	NM_001408	exon2	c.A3716G	p.N1239S	GCGAGAACTACAT	.	149.0	36.0	128.0	0.0	.	228	.	.	Atlas-SNP
EPS8L3	79574	hgsc.bcm.edu	hg19	1	110300674	110300674	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPS8L3	NM_139053	exon9	c.C727T	p.L243L	GGTTCAGCACTTC	.	59.0	22.0	55.0	0.0	.	73	.	.	Atlas-SNP
VANGL1	81839	hgsc.bcm.edu	hg19	1	116226598	116226598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VANGL1	NM_138959	exon6	c.C980T	p.A327V	CCCGGGCCATGAT	.	503.0	219.0	501.0	1.0	.	65	.	.	Atlas-SNP
ZNF697	90874	hgsc.bcm.edu	hg19	1	120166363	120166363	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF697	NM_001080470	exon3	c.C603T	p.G201G	GGCGGCGCCAGGA	.	59.0	24.0	79.0	0.0	.	26	.	.	Atlas-SNP
ZNF697	90874	hgsc.bcm.edu	hg19	1	120166521	120166521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF697	NM_001080470	exon3	c.C445A	p.L149M	TCCCCAGGGAGAG	.	193.0	77.0	190.0	0.0	.	26	.	.	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120468048	120468048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NOTCH2	NM_024408	exon25	c.C4391T	p.A1464V	CAGTTGGCCCAGG	.	138.0	51.0	175.0	0.0	.	348	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	145075655	145075655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PDE4DIP	NM_022359	exon1	c.G208T	p.A70S	CCGCAGCTGCTTC	.	184.0	31.0	224.0	0.0	.	817	.	.	Atlas-SNP
NUDT17	200035	hgsc.bcm.edu	hg19	1	145589355	145589355	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NUDT17	NM_001012758	exon1	c.G73C	p.G25R	GGAGGCCACACAC	.	163.0	17.0	151.0	0.0	.	25	.	.	Atlas-SNP
GJA5	2702	hgsc.bcm.edu	hg19	1	147230336	147230336	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GJA5	NM_005266	exon2	c.T1011A	p.Y337X	ACTATGATAGCCA	.	112.0	36.0	92.0	0.0	.	64	.	.	Atlas-SNP
GJA8	2703	hgsc.bcm.edu	hg19	1	147380385	147380385	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GJA8	NM_005267	exon2	c.C303T	p.R101R	CGTCCGCATGGAG	.	89.0	39.0	47.0	0.0	.	108	.	.	Atlas-SNP
TARS2	80222	hgsc.bcm.edu	hg19	1	150470091	150470091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TARS2	NM_025150	exon10	c.A1106G	p.E369G	ACTGGGAGCATTA	.	78.0	16.0	79.0	0.0	.	91	.	.	Atlas-SNP
ANXA9	8416	hgsc.bcm.edu	hg19	1	150958820	150958820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANXA9	NM_003568	exon8	c.G481A	p.V161M	TTCCAGGTGGAGG	.	97.0	32.0	102.0	0.0	.	28	.	.	Atlas-SNP
LCE1A	353131	hgsc.bcm.edu	hg19	1	152799972	152799972	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LCE1A	NM_178348	exon1	c.G24A	p.Q8Q	CCAGCAGCAGTGC	.	366.0	20.0	352.0	0.0	.	23	.	.	Atlas-SNP
GATAD2B	57459	hgsc.bcm.edu	hg19	1	153784289	153784289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GATAD2B	NM_020699	exon10	c.A1566G	p.I522M	TGTGGGTATGCCA	.	112.0	44.0	99.0	0.0	.	62	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153912225	153912225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DENND4B	NM_014856	exon12	c.G1659T	p.E553D	CACTGCCTCGTAG	.	64.0	26.0	94.0	0.0	.	210	.	.	Atlas-SNP
UBE2Q1	55585	hgsc.bcm.edu	hg19	1	154527247	154527247	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	UBE2Q1,NS,carcinoma,0,1	UBE2Q1	NM_017582	exon4	c.C552T	p.D184D	AGACACGTCTTCC	.	270.0	98.0	268.0	0.0	.	35	.	.	Atlas-SNP
CHRNB2	1141	hgsc.bcm.edu	hg19	1	154542783	154542783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHRNB2	NM_000748	exon4	c.T305C	p.M102T	ACAACATGAAGAA	.	123.0	48.0	127.0	0.0	.	74	.	.	Atlas-SNP
PKLR	5313	hgsc.bcm.edu	hg19	1	155261612	155261612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PKLR	NM_000298	exon10	c.G1553A	p.R518H	GGTTCACGGTAAA	.	267.0	99.0	273.0	0.0	.	70	.	.	Atlas-SNP
FDPS	2224	hgsc.bcm.edu	hg19	1	155282158	155282158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FDPS	NM_001135821	exon4	c.C452T	p.A151V	AGCGGGCCTGGAC	.	65.0	6.0	61.0	0.0	.	41	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155450461	155450461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ASH1L	NM_018489	exon3	c.C2200A	p.L734I	ATTCTAGCCCTTT	.	75.0	34.0	73.0	0.0	.	279	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155452064	155452064	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ASH1L	NM_018489	exon3	c.C597T	p.S199S	ATCCCGGCTACCA	.	117.0	5.0	117.0	0.0	.	279	.	.	Atlas-SNP
LMNA	4000	hgsc.bcm.edu	hg19	1	156106161	156106161	+	Silent	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LMNA	NM_170707	exon7	c.G1314T	p.G438G	TAGCGGGCGCGTG	.	77.0	18.0	94.0	0.0	.	31	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156814001	156814001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	INSRR	NM_014215	exon15	c.C2809A	p.L937I	CAGCAAGAACGAT	.	75.0	42.0	75.0	0.0	.	309	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156914894	156914894	+	Missense_Mutation	SNP	G	G	A	rs140673049		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGEF11	NM_198236	exon30	c.C2908T	p.R970C	GGTGGCGGTTCTC	.	99.0	6.0	108.0	0.0	.	168	.	G|1.000;A|0.000	Atlas-SNP
FCRL1	115350	hgsc.bcm.edu	hg19	1	157772454	157772454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FCRL1	NM_001159397	exon4	c.G320T	p.R107M	GGGACCCCTGTGT	.	72.0	31.0	68.0	0.0	.	164	.	.	Atlas-SNP
OR10R2	343406	hgsc.bcm.edu	hg19	1	158449993	158449993	+	Missense_Mutation	SNP	C	C	T	rs200874337	bycluster	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	OR10R2,NS,NS,0,1	OR10R2	NM_001004472	exon1	c.C326T	p.A109V	CTGTGGCCAGGAC	.	99.0	34.0	96.0	0.0	.	81	.	C|0.999;T|0.001	Atlas-SNP
IGSF9	57549	hgsc.bcm.edu	hg19	1	159897228	159897228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IGSF9	NM_001135050	exon21	c.C3447A	p.F1149L	GGCCAGGAATTCC	.	324.0	111.0	332.0	0.0	.	123	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160109518	160109518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATP1A2	NM_000702	exon21	c.A2929T	p.M977L	CTCCGCATGTACC	.	88.0	37.0	84.0	0.0	.	167	.	.	Atlas-SNP
SLAMF1	6504	hgsc.bcm.edu	hg19	1	160604472	160604472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SLAMF1,NS,carcinoma,0,1	SLAMF1	NM_003037	exon3	c.G631A	p.V211M	TGCTCACGGTGCA	.	146.0	73.0	168.0	1.0	.	74	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171501935	171501935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_015172	exon12	c.G1702C	p.E568Q	GAACTAGAACGGC	.	282.0	104.0	286.0	0.0	.	.	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171514805	171514805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_015172	exon17	c.T4945C	p.F1649L	TCACAGTTTGATC	.	727.0	259.0	691.0	1.0	.	.	.	.	Atlas-SNP
RABGAP1L	9910	hgsc.bcm.edu	hg19	1	174606551	174606551	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RABGAP1L	NM_014857	exon14	c.T1749C	p.H583H	TATTCATCGTACA	.	422.0	175.0	388.0	1.0	.	103	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181680167	181680167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CACNA1E_ENST00000367573,colon,carcinoma,0,2	CACNA1E	NM_001205293	exon8	c.G1133A	p.R378H	TTGAGCGTGAGCT	.	73.0	33.0	96.0	0.0	.	778	.	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	hg19	1	183204833	183204833	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LAMC2	NM_005562	exon16	c.G2424A	p.P808P	TAGCCCGGACGGT	.	196.0	96.0	171.0	0.0	.	113	.	.	Atlas-SNP
EDEM3	80267	hgsc.bcm.edu	hg19	1	184688333	184688333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EDEM3	NM_025191	exon11	c.T1124C	p.L375S	TGATATAACATTT	.	103.0	40.0	110.0	0.0	.	63	.	.	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186276994	186276994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PRG4	NM_005807	exon7	c.A2143G	p.T715A	GCTCCAACTACCC	.	114.0	8.0	99.0	0.0	.	259	.	.	Atlas-SNP
F13B	2165	hgsc.bcm.edu	hg19	1	197026474	197026474	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	F13B	NM_001994	exon6	c.T927C	p.H309H	TGACCCATGGATC	.	196.0	11.0	176.0	0.0	.	137	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197113197	197113197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ASPM	NM_001206846	exon2	c.A331G	p.T111A	GTGGTGTCCAGTT	.	180.0	56.0	160.0	0.0	.	444	.	.	Atlas-SNP
NAV1	89796	hgsc.bcm.edu	hg19	1	201752586	201752586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAV1	NM_020443	exon7	c.G2410A	p.V804I	GACAAGGTCAACT	.	108.0	42.0	115.0	0.0	.	143	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207648316	207648316	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CR2	NM_001006658	exon14	c.A2471T	p.D824V	GAAGTGATTCTAA	.	106.0	47.0	97.0	0.0	.	164	.	.	Atlas-SNP
ANGEL2	90806	hgsc.bcm.edu	hg19	1	213178563	213178563	+	Silent	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANGEL2	NM_144567	exon5	c.A946C	p.R316R	CTCGCCTTGGATT	.	87.0	40.0	84.0	0.0	.	45	.	.	Atlas-SNP
GPATCH2	55105	hgsc.bcm.edu	hg19	1	217688182	217688182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPATCH2	NM_018040	exon6	c.C1148T	p.P383L	GAATCCGGGGAAA	.	435.0	177.0	399.0	0.0	.	53	.	.	Atlas-SNP
GPATCH2	55105	hgsc.bcm.edu	hg19	1	217793392	217793392	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPATCH2	NM_018040	exon2	c.T506A	p.V169E	AGATCTACTGCCA	.	56.0	25.0	53.0	0.0	.	53	.	.	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	hg19	1	220387265	220387265	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RAB3GAP2	NM_012414	exon3	c.T237C	p.V79V	GGATAAAACACAA	.	88.0	6.0	79.0	0.0	.	120	.	.	Atlas-SNP
BROX	148362	hgsc.bcm.edu	hg19	1	222902172	222902172	+	Splice_Site	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BROX	NM_144695	exon9	c.756+2T>C	.	CTTATGTAAGTAT	.	72.0	34.0	57.0	0.0	.	45	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225519251	225519251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAH14	NM_001373	exon63	c.T9557C	p.V3186A	CGTCAGTCTTACT	.	251.0	98.0	287.0	0.0	.	300	.	.	Atlas-SNP
PARP1	142	hgsc.bcm.edu	hg19	1	226556018	226556018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PARP1	NM_001618	exon16	c.T2159A	p.V720E	TGAGACACCGCCT	.	72.0	21.0	90.0	0.0	.	100	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228399645	228399645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OBSCN	NM_001271223	exon2	c.C161T	p.A54V	CCGGCGCGCGCTT	.	136.0	60.0	176.0	0.0	.	2142	.	.	Atlas-SNP
URB2	9816	hgsc.bcm.edu	hg19	1	229786983	229786983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	URB2	NM_014777	exon8	c.T4151C	p.V1384A	TACAGGTAATGCT	.	140.0	6.0	137.0	0.0	.	152	.	.	Atlas-SNP
CAPN9	10753	hgsc.bcm.edu	hg19	1	230916293	230916293	+	Silent	SNP	C	C	T	rs200514450		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CAPN9	NM_006615	exon11	c.C1320T	p.H440H	ATACCACGCTTCT	.	125.0	50.0	123.0	0.0	.	116	.	C|0.999;T|0.001	Atlas-SNP
SPRTN	83932	hgsc.bcm.edu	hg19	1	231488843	231488843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_032018	exon5	c.T1206A	p.D402E	TGAAGATACATTC	.	294.0	134.0	320.0	1.0	.	.	.	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232600968	232600968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIPA1L2	NM_020808	exon7	c.C2438T	p.A813V	TTCTCCGCCAGAT	.	151.0	62.0	135.0	0.0	.	218	.	.	Atlas-SNP
ERO1LB	56605	hgsc.bcm.edu	hg19	1	236445027	236445027	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ERO1LB	NM_019891	exon1	c.G57C	p.Q19H	CAGCAGCTGCACC	.	108.0	6.0	113.0	0.0	.	48	.	.	Atlas-SNP
MTR	4548	hgsc.bcm.edu	hg19	1	236959039	236959039	+	Splice_Site	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MTR	NM_000254	exon1	c.34+2T>C	.	ACCCGGTAACGCT	.	65.0	27.0	67.0	0.0	.	127	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237951398	237951398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RYR2	NM_001035	exon92	c.T13439A	p.F4480Y	CAGCATTCTGGAA	.	813.0	341.0	827.0	1.0	.	1273	.	.	Atlas-SNP
FH	2271	hgsc.bcm.edu	hg19	1	241680550	241680550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FH	NM_000143	exon2	c.T199C	p.Y67H	CATAATACTTATC	.	112.0	45.0	102.0	0.0	.	64	.	.	Atlas-SNP
ZNF695	57116	hgsc.bcm.edu	hg19	1	247150429	247150429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF695	NM_020394	exon4	c.C1388T	p.P463L	TTGTAGGGTTTCT	.	80.0	40.0	67.0	0.0	.	55	.	.	Atlas-SNP
ZNF496	84838	hgsc.bcm.edu	hg19	1	247464566	247464566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF496	NM_032752	exon9	c.C1019T	p.P340L	GATCGCGGGTTGC	.	38.0	13.0	34.0	0.0	.	80	.	.	Atlas-SNP
OR2T1	26696	hgsc.bcm.edu	hg19	1	248569984	248569984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR2T1	NM_030904	exon1	c.A689G	p.E230G	TCTGTGAGGCACC	.	109.0	32.0	93.0	0.0	.	89	.	.	Atlas-SNP
OR2T2	401992	hgsc.bcm.edu	hg19	1	248616797	248616797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR2T2	NM_001004136	exon1	c.G699T	p.E233D	TGCTGAGGGCCGG	.	245.0	11.0	248.0	0.0	.	73	.	.	Atlas-SNP
ZNF672	79894	hgsc.bcm.edu	hg19	1	249142190	249142190	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF672	NM_024836	exon4	c.C717T	p.S239S	GGAGAGCGCCACG	.	61.0	25.0	81.0	0.0	.	32	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1670259	1670259	+	Splice_Site	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PXDN	NM_012293	exon11	c.1019-1G>A	.	GTCGAGCTGTCAC	.	167.0	73.0	190.0	0.0	.	255	.	.	Atlas-SNP
TRAPPC12	51112	hgsc.bcm.edu	hg19	2	3469411	3469411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_016030	exon9	c.A1721G	p.Y574C	TCAAGTATTACCC	.	82.0	15.0	101.0	0.0	.	.	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15359052	15359052	+	Missense_Mutation	SNP	G	G	A	rs200331420	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NBAS	NM_015909	exon48	c.C6277T	p.R2093W	AAGGCCGCAGCCA	.	291.0	113.0	293.0	0.0	.	246	.	G|0.999;C|0.001	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15607895	15607895	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NBAS	NM_015909	exon18	c.T1911C	p.S637S	GGAGATACTGTCA	.	338.0	127.0	322.0	0.0	.	246	.	.	Atlas-SNP
DDX1	1653	hgsc.bcm.edu	hg19	2	15768807	15768807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DDX1	NM_004939	exon22	c.G1805A	p.R602Q	TACATCGAATTGG	.	147.0	61.0	166.0	0.0	.	70	.	.	Atlas-SNP
MYCN	4613	hgsc.bcm.edu	hg19	2	16082705	16082705	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYCN	NM_005378	exon2	c.C519T	p.A173A	CGGGGCCGCCCTG	.	92.0	35.0	102.0	0.0	.	63	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21265319	21265319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	APOB	NM_000384	exon3	c.A151G	p.K51E	TGTACTTCCGGAG	.	139.0	59.0	159.0	0.0	.	761	.	.	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	hg19	2	26676396	26676396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC164	NM_145038	exon14	c.T1898C	p.V633A	CCTTCGTCATGGG	.	143.0	57.0	156.0	0.0	.	84	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32696085	32696085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BIRC6	NM_016252	exon32	c.T6485C	p.V2162A	CAGGAGTACTAGA	.	126.0	55.0	121.0	0.0	.	838	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32696135	32696135	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BIRC6	NM_016252	exon32	c.C6535T	p.L2179L	AGGTTGCTGGATT	.	165.0	75.0	134.0	0.0	.	838	.	.	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33500964	33500964	+	Missense_Mutation	SNP	G	G	A	rs142262862	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LTBP1	NM_206943	exon18	c.G2966A	p.R989H	GGTACCGCATGAC	.	65.0	17.0	85.0	0.0	.	317	.	G|1.000;T|0.000	Atlas-SNP
FAM98A	25940	hgsc.bcm.edu	hg19	2	33810066	33810066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM98A	NM_015475	exon8	c.A1334G	p.D445G	CTATTGTCCTGCT	.	102.0	34.0	76.0	0.0	.	42	.	.	Atlas-SNP
SOCS5	9655	hgsc.bcm.edu	hg19	2	46986966	46986966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SOCS5	NM_144949	exon2	c.T1297C	p.W433R	GAGCAGTGGAATC	.	83.0	4.0	173.0	0.0	.	62	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61633160	61633160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	USP34	NM_014709	exon3	c.G235T	p.D79Y	GCTGGTCCCGGAG	.	65.0	46.0	146.0	0.0	.	334	.	.	Atlas-SNP
TMEM17	200728	hgsc.bcm.edu	hg19	2	62733210	62733210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM17	NM_198276	exon1	c.T55C	p.F19L	CACTGAACACGGC	.	113.0	74.0	195.0	0.0	.	19	.	.	Atlas-SNP
ADD2	119	hgsc.bcm.edu	hg19	2	70900405	70900405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADD2	NM_017488	exon15	c.A1795T	p.S599C	CAACGCTGAAGAA	.	77.0	60.0	151.0	0.0	.	261	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71650049	71650049	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF638	NM_014497	exon22	c.T3405G	p.I1135M	CAGCATTCAAACA	.	122.0	89.0	210.0	0.0	.	179	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71740432	71740432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DYSF	NM_001130982	exon6	c.T523C	p.Y175H	ACGAGATACTCTG	.	131.0	94.0	249.0	0.0	.	536	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71755509	71755509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DYSF	NM_001130982	exon14	c.A1358C	p.E453A	TTGTGGAGGTCAG	.	71.0	49.0	122.0	0.0	.	536	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71766312	71766312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DYSF_ENST00000410020,bladder,carcinoma,0,2	DYSF	NM_001130982	exon17	c.G1519A	p.V507M	GACATCGTGGCTA	.	47.0	33.0	63.0	0.0	.	536	.	.	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	hg19	2	74593128	74593128	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DCTN1,right_upper_lobe,carcinoma,-2,1	DCTN1	NM_004082	exon24	c.G2778A	p.L926L	AGCCCGCAGTTCA	.	81.0	37.0	60.0	0.0	.	110	.	.	Atlas-SNP
M1AP	130951	hgsc.bcm.edu	hg19	2	74789369	74789369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_138804	exon8	c.A1256G	p.H419R	TCATCATGTGGGT	.	121.0	21.0	112.0	0.0	.	.	.	.	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	hg19	2	77746553	77746553	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRTM4	NM_024993	exon3	c.T442C	p.L148L	ATTGCAATGTCTG	.	162.0	71.0	180.0	0.0	.	334	.	.	Atlas-SNP
GGCX	2677	hgsc.bcm.edu	hg19	2	85788544	85788544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GGCX	NM_000821	exon1	c.T8C	p.V3A	GCAGACACCGCCA	.	194.0	77.0	217.0	0.0	.	44	.	.	Atlas-SNP
STARD7	56910	hgsc.bcm.edu	hg19	2	96852600	96852600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STARD7	NM_020151	exon8	c.T981A	p.N327K	CTCCATATTCTTG	.	161.0	74.0	152.0	0.0	.	49	.	.	Atlas-SNP
TMEM131	23505	hgsc.bcm.edu	hg19	2	98382614	98382614	+	Silent	SNP	C	C	T	rs376329900		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM131	NM_015348	exon35	c.G4686A	p.P1562P	CCACTCCGGTGGA	.	213.0	86.0	238.0	0.0	.	258	.	.	Atlas-SNP
MGAT4A	11320	hgsc.bcm.edu	hg19	2	99294779	99294779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MGAT4A	NM_012214	exon3	c.A250T	p.N84Y	ACTTATTCAACGC	.	63.0	21.0	72.0	0.0	.	51	.	.	Atlas-SNP
SLC9A2	6549	hgsc.bcm.edu	hg19	2	103311560	103311560	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC9A2	NM_003048	exon7	c.T1574G	p.F525C	ACAACTTTTGGAG	.	109.0	40.0	116.0	0.0	.	112	.	.	Atlas-SNP
BUB1	699	hgsc.bcm.edu	hg19	2	111416240	111416240	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	BUB1,colon,NS,0,1	BUB1	NM_004336	exon12	c.G1356A	p.T452T	GGATGGCGTTGCC	.	114.0	45.0	114.0	0.0	.	91	.	.	Atlas-SNP
RALB	5899	hgsc.bcm.edu	hg19	2	121036312	121036312	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RALB	NM_002881	exon2	c.C72T	p.G24G	CGGAGGCGTTGGC	.	68.0	25.0	97.0	0.0	.	27	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121746146	121746146	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GLI2	NM_005270	exon13	c.C2656T	p.Q886X	GCGCAGCAGTACA	.	158.0	67.0	138.0	0.0	.	187	.	.	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128471170	128471170	+	Missense_Mutation	SNP	G	G	A	rs373594035		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	WDR33,NS,carcinoma,0,1	WDR33	NM_018383	exon18	c.C3295T	p.R1099C	CTCTGCGCCCTCG	.	81.0	25.0	132.0	1.0	.	136	.	.	Atlas-SNP
CCDC74B	91409	hgsc.bcm.edu	hg19	2	130897479	130897479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC74B	NM_207310	exon7	c.G992A	p.S331N	GAGAGGCTCTTGG	.	124.0	39.0	125.0	0.0	.	27	.	.	Atlas-SNP
CCNT2	905	hgsc.bcm.edu	hg19	2	135711218	135711218	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCNT2	NM_058241	exon9	c.A1193T	p.D398V	GACCTGACAAAAT	.	154.0	107.0	286.0	0.0	.	98	.	.	Atlas-SNP
ZRANB3	84083	hgsc.bcm.edu	hg19	2	136029454	136029454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZRANB3	NM_032143	exon10	c.C1090T	p.R364C	TGTAACGAGTCTA	.	39.0	29.0	65.0	0.0	.	109	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141232790	141232790	+	Missense_Mutation	SNP	A	A	T	rs377526659	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRP1B	NM_018557	exon60	c.T9542A	p.I3181K	TAATCTATTGTTA	.	131.0	99.0	190.0	0.0	.	1315	.	.	Atlas-SNP
ARHGAP15	55843	hgsc.bcm.edu	hg19	2	144313999	144313999	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGAP15	NM_018460	exon11	c.T948C	p.Y316Y	AATATATCGAGTT	.	93.0	72.0	131.0	0.0	.	99	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148674907	148674907	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ACVR2A	NM_001616	exon6	c.A728T	p.H243L	TGAAGCATGAGAA	.	125.0	91.0	244.0	0.0	.	125	.	.	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	hg19	2	159526240	159526240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PKP4	NM_001005476	exon17	c.G2737A	p.A913T	AAATACGCCATGC	.	114.0	73.0	270.0	0.0	.	133	.	.	Atlas-SNP
COBLL1	22837	hgsc.bcm.edu	hg19	2	165556006	165556006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COBLL1	NM_014900	exon11	c.A1581C	p.E527D	GTGTGGTTCTCTG	.	39.0	34.0	75.0	0.0	.	122	.	.	Atlas-SNP
TTC21B	79809	hgsc.bcm.edu	hg19	2	166747435	166747435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TTC21B	NM_024753	exon23	c.T3014C	p.V1005A	CTTGGGACATCCT	.	142.0	6.0	250.0	0.0	.	130	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166850833	166850833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SCN1A	NM_001165963	exon25	c.A4675C	p.M1559L	CCACCATCATTGT	.	125.0	12.0	225.0	0.0	.	641	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166850895	166850895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SCN1A	NM_001165963	exon25	c.T4613C	p.V1538A	CTGGTTACGAAGT	.	93.0	34.0	190.0	0.0	.	641	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168103817	168103817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	XIRP2	NM_152381	exon9	c.A5915G	p.N1972S	AGAGGAACAAAAA	.	167.0	67.0	245.0	0.0	.	914	.	.	Atlas-SNP
FASTKD1	79675	hgsc.bcm.edu	hg19	2	170396679	170396679	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FASTKD1	NM_024622	exon10	c.T1827A	p.D609E	AAAAGGATCCAAT	.	342.0	243.0	532.0	2.0	.	86	.	.	Atlas-SNP
FASTKD1	79675	hgsc.bcm.edu	hg19	2	170403008	170403008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FASTKD1	NM_024622	exon8	c.C1421T	p.A474V	TGTTTCGCAGTCA	.	148.0	111.0	265.0	1.0	.	86	.	.	Atlas-SNP
KIAA1715	80856	hgsc.bcm.edu	hg19	2	176802232	176802232	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1715	NM_030650	exon12	c.T894C	p.C298C	GTAGGCACATCGA	.	56.0	5.0	97.0	0.0	.	61	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179411087	179411087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TTN	NM_001267550	exon342	c.T94971A	p.D31657E	ACAGAGATCTAGC	.	39.0	27.0	74.0	0.0	.	18412	.	.	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	hg19	2	182399041	182399041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITGA4	NM_000885	exon26	c.T2827C	p.F943L	ACAGGTTTTCCAG	.	283.0	191.0	537.0	2.0	.	142	.	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	hg19	2	187626496	187626496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM171B	NM_177454	exon8	c.A1427G	p.N476S	AAAATAATTACTC	.	122.0	10.0	126.0	0.0	.	146	.	.	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	hg19	2	190426694	190426694	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC40A1	NM_014585	exon8	c.C1626T	p.A542A	ATTTTGGGCAAAT	.	248.0	100.0	224.0	0.0	.	51	.	.	Atlas-SNP
ANKAR	150709	hgsc.bcm.edu	hg19	2	190585420	190585420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANKAR	NM_144708	exon12	c.C2542T	p.R848W	TGTATACGGGTAT	.	113.0	5.0	121.0	0.0	.	184	.	.	Atlas-SNP
C2orf88	84281	hgsc.bcm.edu	hg19	2	191064799	191064799	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C2orf88	NM_001042519	exon2	c.T213C	p.C71C	CTTGTGTGATGCC	.	111.0	42.0	114.0	0.0	.	7	.	.	Atlas-SNP
NAB1	4664	hgsc.bcm.edu	hg19	2	191524471	191524471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAB1	NM_005966	exon4	c.C569T	p.A190V	GTGAGGCGCTGGA	.	243.0	93.0	211.0	0.0	.	31	.	.	Atlas-SNP
GTF3C3	9330	hgsc.bcm.edu	hg19	2	197653948	197653948	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GTF3C3	NM_001206774	exon6	c.G873A	p.Q291Q	AGCCAGCTGCATA	.	139.0	49.0	158.0	0.0	.	96	.	.	Atlas-SNP
KCTD18	130535	hgsc.bcm.edu	hg19	2	201355178	201355178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCTD18	NM_152387	exon7	c.C926T	p.A309V	GCTGTCGCCCCAG	.	50.0	27.0	72.0	0.0	.	44	.	.	Atlas-SNP
ALS2CR8	79800	hgsc.bcm.edu	hg19	2	203846349	203846349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ALS2CR8	NM_024744	exon15	c.C1630T	p.P544S	CCTGAGCCAACCC	.	603.0	222.0	703.0	2.0	.	56	.	.	Atlas-SNP
ABI2	10152	hgsc.bcm.edu	hg19	2	204281668	204281668	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABI2	NM_005759	exon9	c.A1116G	p.E372E	GGAAGAACCAGTC	.	78.0	23.0	69.0	0.0	.	44	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207171520	207171520	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZDBF2	NM_020923	exon5	c.G2268A	p.P756P	TGACCCGCCTCTT	.	73.0	26.0	74.0	0.0	.	531	.	.	Atlas-SNP
PLEKHM3	389072	hgsc.bcm.edu	hg19	2	208725985	208725985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PLEKHM3	NM_001080475	exon7	c.T1952C	p.V651A	TCTATTACCTGCA	.	112.0	57.0	108.0	0.0	.	101	.	.	Atlas-SNP
CRYGC	1420	hgsc.bcm.edu	hg19	2	208992994	208992994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CRYGC	NM_020989	exon3	c.G458A	p.R153Q	TGGCACCGCCTGT	.	139.0	45.0	128.0	0.0	.	28	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215852484	215852484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABCA12	NM_173076	exon27	c.C3863T	p.P1288L	AGAATTGGAAAAT	.	236.0	95.0	262.0	0.0	.	368	.	.	Atlas-SNP
ATIC	471	hgsc.bcm.edu	hg19	2	216197219	216197219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATIC	NM_004044	exon8	c.T803C	p.V268A	AACATGTCAGCCC	.	65.0	22.0	88.0	0.0	.	84	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216259426	216259426	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FN1	NM_212476	exon24	c.A3621T	p.R1207S	GGTAATTCTATAA	.	73.0	30.0	56.0	0.0	.	521	.	.	Atlas-SNP
C2orf62	375307	hgsc.bcm.edu	hg19	2	219222348	219222348	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C2orf62	NM_198559	exon3	c.G210A	p.V70V	TGAGGTGCAGAGA	.	58.0	24.0	76.0	0.0	.	28	.	.	Atlas-SNP
STK36	27148	hgsc.bcm.edu	hg19	2	219563382	219563382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STK36	NM_015690	exon26	c.C3115T	p.R1039C	CTCACACGCCTGG	.	119.0	49.0	108.0	0.0	.	111	.	.	Atlas-SNP
CNPPD1	27013	hgsc.bcm.edu	hg19	2	220037323	220037323	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CNPPD1	NM_015680	exon8	c.C1218T	p.F406F	GAAAACGAAAGAC	.	76.0	24.0	82.0	0.0	.	22	.	.	Atlas-SNP
ZFAND2B	130617	hgsc.bcm.edu	hg19	2	220073041	220073041	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZFAND2B	NM_138802	exon5	c.A498G	p.Q166Q	AAGTCAAACCATG	.	147.0	45.0	190.0	0.0	.	28	.	.	Atlas-SNP
TUBA4A	7277	hgsc.bcm.edu	hg19	2	220115838	220115838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TUBA4A	NM_006000	exon4	c.C583A	p.L195M	GCTCCAGGGTGGT	.	88.0	9.0	89.0	0.0	.	96	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220427202	220427202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OBSL1	NM_001173431	exon8	c.G2875A	p.A959T	GGACAGCGGGCAG	.	116.0	5.0	113.0	0.0	.	120	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230652245	230652245	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIP12	NM_004238	exon32	c.T4746C	p.V1582V	AGGTGCAACTCTG	.	167.0	71.0	131.0	0.0	.	207	.	.	Atlas-SNP
NMUR1	10316	hgsc.bcm.edu	hg19	2	232393179	232393179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	NMUR1,NS,carcinoma,0,1	NMUR1	NM_006056	exon2	c.G553A	p.V185I	CCCAGACGGCCCC	.	99.0	58.0	94.0	0.0	.	46	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233612329	233612329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GIGYF2	NM_001103146	exon4	c.C46T	p.R16X	AGGCTCCGAGCTC	.	95.0	4.0	82.0	0.0	.	288	.	.	Atlas-SNP
NEU2	4759	hgsc.bcm.edu	hg19	2	233899090	233899090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NEU2	NM_005383	exon2	c.A466G	p.T156A	TGGTCCACCTTTG	.	60.0	6.0	69.0	0.0	.	42	.	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240029867	240029867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HDAC4	NM_006037	exon15	c.A1976G	p.D659G	AGCGTGTCATACA	.	158.0	57.0	208.0	0.0	.	127	.	.	Atlas-SNP
HDLBP	3069	hgsc.bcm.edu	hg19	2	242174657	242174657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HDLBP	NM_005336	exon23	c.T3023C	p.V1008A	GCCGGGACATGTA	.	47.0	20.0	52.0	0.0	.	118	.	.	Atlas-SNP
SSUH2	51066	hgsc.bcm.edu	hg19	3	8671370	8671370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001256748	exon7	c.G568A	p.G190S	GGCAGCCGCTGCA	.	59.0	23.0	86.0	0.0	.	.	.	.	Atlas-SNP
TMEM40	55287	hgsc.bcm.edu	hg19	3	12790175	12790175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM40	NM_018306	exon3	c.T190C	p.S64P	ATGAAGAAGATGA	.	32.0	18.0	27.0	0.0	.	22	.	.	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13368741	13368741	+	Missense_Mutation	SNP	C	C	T	rs199638243		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NUP210	NM_024923	exon32	c.G4483A	p.A1495T	CAGTGGCCAGACA	.	48.0	8.0	67.0	0.0	.	182	.	.	Atlas-SNP
C3orf20	84077	hgsc.bcm.edu	hg19	3	14724484	14724484	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C3orf20	NM_032137	exon3	c.C264T	p.V88V	GCAGGTCCCCACA	.	139.0	57.0	127.0	0.0	.	109	.	.	Atlas-SNP
NR2C2	7182	hgsc.bcm.edu	hg19	3	15057748	15057748	+	Silent	SNP	C	C	T	rs369008989		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NR2C2	NM_003298	exon5	c.C420T	p.G140G	CTGTGGCGACAAA	.	113.0	39.0	160.0	0.0	.	44	.	.	Atlas-SNP
ZFYVE20	64145	hgsc.bcm.edu	hg19	3	15116270	15116270	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZFYVE20	NM_022340	exon14	c.G1374A	p.P458P	GAGGAGCGGGTCT	.	100.0	41.0	99.0	0.0	.	61	.	.	Atlas-SNP
DAZL	1618	hgsc.bcm.edu	hg19	3	16639957	16639957	+	Splice_Site	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DAZL	NM_001351	exon3	c.150+2T>C	.	TACAATACCCTAA	.	41.0	20.0	56.0	0.0	.	23	.	.	Atlas-SNP
UBE2E2	7325	hgsc.bcm.edu	hg19	3	23631290	23631290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UBE2E2	NM_152653	exon6	c.G574A	p.A192T	CGGATGGCCAGAC	.	347.0	141.0	364.0	0.0	.	24	.	.	Atlas-SNP
PDCD6IP	10015	hgsc.bcm.edu	hg19	3	33885697	33885697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PDCD6IP	NM_001162429	exon11	c.T1468C	p.Y490H	GAACTGTATAAGC	.	573.0	205.0	641.0	0.0	.	62	.	.	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36872532	36872532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRANK1	NM_014831	exon21	c.G8410A	p.A2804T	CAATGGCCGGGTC	.	102.0	7.0	116.0	0.0	.	398	.	.	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36875360	36875360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRANK1	NM_014831	exon21	c.A5582G	p.Y1861C	GCAGAATAGGAGA	.	54.0	23.0	61.0	0.0	.	398	.	.	Atlas-SNP
EPM2AIP1	9852	hgsc.bcm.edu	hg19	3	37032816	37032816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPM2AIP1	NM_014805	exon1	c.C1753T	p.R585W	CAACCCGAAACAG	.	166.0	9.0	182.0	0.0	.	47	.	.	Atlas-SNP
ITGA9	3680	hgsc.bcm.edu	hg19	3	37821428	37821428	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITGA9	NM_002207	exon25	c.A2703G	p.A901A	AACAGCACACTGT	.	78.0	25.0	109.0	0.0	.	98	.	.	Atlas-SNP
WDR48	57599	hgsc.bcm.edu	hg19	3	39125659	39125659	+	Missense_Mutation	SNP	A	A	T	rs112491258	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WDR48	NM_020839	exon12	c.A1187T	p.E396V	AAGTTGAAGATCT	.	104.0	33.0	104.0	0.0	.	41	.	A|0.500;G|0.500	Atlas-SNP
CCR8	1237	hgsc.bcm.edu	hg19	3	39374347	39374347	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCR8	NM_005201	exon2	c.C525A	p.A175A	AGTGGCCTCTGAA	.	94.0	24.0	86.0	0.0	.	34	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CTNNB1,NS,carcinoma,+1,2	CTNNB1	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	182.0	67.0	157.0	0.0	.	4904	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46008574	46008574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	FYCO1	NM_024513	exon8	c.A2252G	p.K751R	TGGCCTTTCTCTG	.	39.0	11.0	55.0	0.0	.	115	.	.	Atlas-SNP
CCR3	1232	hgsc.bcm.edu	hg19	3	46307586	46307586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCR3	NM_178328	exon3	c.C1000T	p.R334C	TACCTGCGCCACT	.	77.0	37.0	58.0	0.0	.	52	.	.	Atlas-SNP
TDGF1	6997	hgsc.bcm.edu	hg19	3	46619474	46619474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TDGF1	NM_003212	exon1	c.G15T	p.K5N	CAGGAAGATGGCC	.	66.0	25.0	69.0	0.0	.	17	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47047032	47047032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NBEAL2	NM_015175	exon41	c.G6614T	p.R2205L	AGGCACGCCTGGA	.	141.0	7.0	150.0	0.0	.	267	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48689914	48689914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	CELSR3	NM_001407	exon11	c.G5707A	p.G1903S	CACTGCCGGGGGG	.	93.0	42.0	109.0	0.0	.	237	.	.	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49751388	49751388	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RNF123	NM_022064	exon30	c.G2883A	p.R961R	GCAGCGGCCCTGG	.	113.0	47.0	120.0	0.0	.	100	.	.	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50145541	50145541	+	Nonsense_Mutation	SNP	T	T	A	rs148691467	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBM5	NM_005778	exon13	c.T1080A	p.Y360X	CAGTTATCTGCAA	.	111.0	30.0	120.0	0.0	.	76	.	T|1.000;C|0.000	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52382985	52382985	+	Missense_Mutation	SNP	C	C	T	rs371359758		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DNAH1_ENST00000420323,NS,carcinoma,0,2	DNAH1	NM_015512	exon13	c.C2188T	p.R730W	GAGCTACGGGCCA	.	39.0	15.0	57.0	0.0	.	534	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52428572	52428572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAH1	NM_015512	exon67	c.A10718T	p.D3573V	GGCGAGACATCCT	.	116.0	55.0	122.0	0.0	.	534	.	.	Atlas-SNP
ITIH3	3699	hgsc.bcm.edu	hg19	3	52840398	52840398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ITIH3_ENST00000449956,NS,carcinoma,-1,1	ITIH3	NM_002217	exon18	c.C2032T	p.R678C	GTGCTGCGCCTTA	.	65.0	27.0	48.0	1.0	.	132	.	.	Atlas-SNP
LRTM1	57408	hgsc.bcm.edu	hg19	3	54958759	54958759	+	Missense_Mutation	SNP	G	G	A	rs372086680	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRTM1	NM_020678	exon2	c.C491T	p.A164V	AGGAGCGCTCGAT	.	100.0	46.0	136.0	0.0	.	52	.	.	Atlas-SNP
WNT5A	7474	hgsc.bcm.edu	hg19	3	55508545	55508545	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WNT5A	NM_003392	exon4	c.G504A	p.A168A	GGGGCGCGCGGCG	.	78.0	28.0	56.0	0.0	.	43	.	.	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	hg19	3	66449417	66449417	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRIG1	NM_015541	exon10	c.G1209A	p.S403S	CAGCCCCGAGAAT	.	70.0	22.0	96.0	0.0	.	138	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	85961549	85961549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CADM2	NM_001167675	exon6	c.G556A	p.A186T	GAGGATGCAAATC	.	464.0	176.0	465.0	1.0	.	195	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89462400	89462400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPHA3	NM_005233	exon10	c.T1872A	p.D624E	CATTGATAAAGTT	.	160.0	60.0	164.0	0.0	.	501	.	.	Atlas-SNP
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101383437	101383437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZBTB11	NM_014415	exon5	c.A1745G	p.Y582C	AGGGCGTATCGTC	.	121.0	43.0	138.0	0.0	.	77	.	.	Atlas-SNP
CD47	961	hgsc.bcm.edu	hg19	3	107798890	107798890	+	Silent	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CD47	NM_198793	exon2	c.A348C	p.V116V	TTCTGTTACTTCA	.	161.0	65.0	146.0	0.0	.	37	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111898494	111898494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_183061	exon23	c.A2803G	p.K935E	AATCTTTCTCCTT	.	85.0	38.0	62.0	0.0	.	.	.	.	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112358126	112358126	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC80	NM_199511	exon2	c.C627T	p.I209I	CTCCAGGATCTGG	.	99.0	31.0	85.0	0.0	.	100	.	.	Atlas-SNP
SPICE1	152185	hgsc.bcm.edu	hg19	3	113188014	113188014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPICE1	NM_144718	exon8	c.T683C	p.I228T	GTTGCTATTTTCT	.	151.0	31.0	118.0	0.0	.	130	.	.	Atlas-SNP
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114070331	114070331	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ZBTB20,colon,carcinoma,0,1	ZBTB20	NM_001164342	exon4	c.C594T	p.G198G	CACATCGCCCACG	.	76.0	9.0	89.0	0.0	.	157	.	.	Atlas-SNP
HCLS1	3059	hgsc.bcm.edu	hg19	3	121353148	121353148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HCLS1	NM_005335	exon10	c.C809T	p.A270V	GTCACAGCCTTTC	.	68.0	26.0	57.0	0.0	.	78	.	.	Atlas-SNP
CSTA	1475	hgsc.bcm.edu	hg19	3	122060396	122060396	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CSTA,NS,carcinoma,0,1	CSTA	NM_005213	exon3	c.C279T	p.D93D	GGATGACGAGCTG	.	174.0	29.0	163.0	0.0	.	11	.	.	Atlas-SNP
EFCAB12	90288	hgsc.bcm.edu	hg19	3	129137245	129137245	+	Missense_Mutation	SNP	T	T	C	rs116798859	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_207307	exon3	c.A533G	p.Q178R	TGGAGCTGGGGCA	.	88.0	28.0	91.0	0.0	.	.	.	T|0.975;G|0.025	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129284250	129284250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PLXND1,colon,carcinoma,0,1	PLXND1	NM_015103	exon25	c.G4454A	p.R1485H	TCTGTGCGCCGCA	.	103.0	40.0	115.0	1.0	.	149	.	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132169658	132169658	+	Silent	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAJC13	NM_015268	exon6	c.A504T	p.G168G	AGGAGGATTTTGT	.	194.0	83.0	230.0	0.0	.	253	.	.	Atlas-SNP
PPP2R3A	5523	hgsc.bcm.edu	hg19	3	135825069	135825069	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPP2R3A	NM_002718	exon13	c.C3234T	p.N1078N	TGAGAACGATGGG	.	111.0	9.0	107.0	0.0	.	114	.	.	Atlas-SNP
STAG1	10274	hgsc.bcm.edu	hg19	3	136141653	136141653	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STAG1	NM_005862	exon18	c.A1790C	p.Q597P	AAATACTGTGGGA	.	164.0	7.0	187.0	0.0	.	135	.	.	Atlas-SNP
ZBTB38	253461	hgsc.bcm.edu	hg19	3	141162007	141162007	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZBTB38	NM_001080412	exon8	c.A777G	p.K259K	AGCGAAACCGAAA	.	112.0	39.0	109.0	0.0	.	92	.	.	Atlas-SNP
GK5	256356	hgsc.bcm.edu	hg19	3	141901813	141901813	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GK5	NM_001039547	exon10	c.A895T	p.T299S	AAAATGTCCCAGT	.	119.0	43.0	128.0	0.0	.	45	.	.	Atlas-SNP
ZIC1	7545	hgsc.bcm.edu	hg19	3	147128096	147128096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZIC1	NM_003412	exon1	c.C197T	p.S66L	TCACGTCGCAGGC	.	92.0	34.0	90.0	0.0	.	141	.	.	Atlas-SNP
CPA3	1359	hgsc.bcm.edu	hg19	3	148599317	148599317	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CPA3	NM_001870	exon7	c.A585C	p.K195N	AACCAAAACTTAT	.	111.0	43.0	100.0	0.0	.	75	.	.	Atlas-SNP
GPR87	53836	hgsc.bcm.edu	hg19	3	151012803	151012803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPR87	NM_023915	exon3	c.A231G	p.I77M	ATAGAATATGAAG	.	93.0	35.0	129.0	0.0	.	52	.	.	Atlas-SNP
P2RY13	53829	hgsc.bcm.edu	hg19	3	151046419	151046419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	P2RY13	NM_176894	exon2	c.T425C	p.F142S	TTGAGGAATCTGT	.	285.0	89.0	246.0	0.0	.	80	.	.	Atlas-SNP
P2RY1	5028	hgsc.bcm.edu	hg19	3	152554282	152554282	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	P2RY1	NM_002563	exon1	c.C711T	p.Y237Y	CTGTTACGGATTA	.	110.0	48.0	93.0	0.0	.	49	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153912436	153912436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGEF26	NM_001251962	exon9	c.A1774G	p.I592V	CAGACTATCTGTC	.	189.0	69.0	181.0	0.0	.	158	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154146778	154146778	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPR149	NM_001038705	exon1	c.A627G	p.S209S	TGGGACTGAGAGG	.	219.0	88.0	262.0	0.0	.	134	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	155861202	155861202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCNAB1	NM_003471	exon1	c.G235A	p.A79T	GGCATGGCATACA	.	85.0	43.0	126.0	0.0	.	176	.	.	Atlas-SNP
PLD1	5337	hgsc.bcm.edu	hg19	3	171453412	171453412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PLD1	NM_002662	exon4	c.C304T	p.L102F	TGTAAAGATTAAT	.	153.0	77.0	135.0	0.0	.	134	.	.	Atlas-SNP
KCNMB2	10242	hgsc.bcm.edu	hg19	3	178525220	178525220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCNMB2	NM_005832	exon3	c.G23A	p.R8Q	GTGGCCGGACCTC	.	91.0	27.0	106.0	0.0	.	35	.	.	Atlas-SNP
USP13	8975	hgsc.bcm.edu	hg19	3	179448452	179448452	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	USP13	NM_003940	exon10	c.G1209A	p.P403P	GCCTCCGGTGAAA	.	146.0	59.0	156.0	0.0	.	117	.	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180378451	180378451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC39	NM_181426	exon4	c.A423C	p.Q141H	CAATGCTTGCTGG	.	93.0	39.0	86.0	0.0	.	242	.	.	Atlas-SNP
B3GNT5	84002	hgsc.bcm.edu	hg19	3	182988028	182988028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	B3GNT5	NM_032047	exon2	c.T442C	p.W148R	CTGGCTTGGGAAG	.	154.0	61.0	157.0	0.0	.	26	.	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183955189	183955189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	VWA5B2,caecum,carcinoma,0,1	VWA5B2	NM_138345	exon11	c.G1709A	p.R570H	GGTCCCGCCCACC	.	66.0	23.0	79.0	0.0	.	47	.	.	Atlas-SNP
DGKG	1608	hgsc.bcm.edu	hg19	3	185975727	185975727	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DGKG	NM_001346	exon17	c.T1426G	p.L476V	AGTTCAACCTGGG	.	98.0	6.0	105.0	0.0	.	98	.	.	Atlas-SNP
IL1RAP	3556	hgsc.bcm.edu	hg19	3	190338162	190338162	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IL1RAP	NM_001167929	exon5	c.T636C	p.C212C	CACATGTGTTGTT	.	95.0	20.0	135.0	0.0	.	96	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195475922	195475922	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MUC4	NM_018406	exon24	c.G15885A	p.T5295T	CTTCAGCGTGCTC	.	49.0	6.0	57.0	0.0	.	1505	.	.	Atlas-SNP
UVSSA	57654	hgsc.bcm.edu	hg19	4	1343357	1343357	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_020894	exon3	c.A144G	p.A48A	GATAGCACAGCTG	.	78.0	32.0	87.0	0.0	.	.	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3241599	3241599	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HTT	NM_002111	exon67	c.G9242C	p.G3081A	GGATGGGCAAGCT	.	77.0	33.0	79.0	0.0	.	221	.	.	Atlas-SNP
AFAP1	60312	hgsc.bcm.edu	hg19	4	7783227	7783227	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AFAP1	NM_001134647	exon13	c.A1658T	p.D553V	TTTCTGTCAGCAG	.	179.0	81.0	202.0	0.0	.	93	.	.	Atlas-SNP
LAP3	51056	hgsc.bcm.edu	hg19	4	17590466	17590466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LAP3	NM_015907	exon7	c.G729T	p.Q243H	GGAACAGGCAATG	.	337.0	137.0	339.0	0.0	.	50	.	.	Atlas-SNP
FAM184B	27146	hgsc.bcm.edu	hg19	4	17649411	17649411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM184B	NM_015688	exon12	c.C2195T	p.S732L	CTGAGCGACTCTG	.	23.0	5.0	24.0	0.0	.	38	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22389385	22389385	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPR125	NM_145290	exon19	c.T3909C	p.G1303G	ATCGGTACCGAGC	.	265.0	113.0	236.0	1.0	.	118	.	.	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	hg19	4	23833257	23833257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPARGC1A	NM_013261	exon3	c.A352G	p.T118A	CAGTGGTCACGTC	.	110.0	5.0	129.0	0.0	.	129	.	.	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	hg19	4	25005399	25005399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LGI2	NM_018176	exon8	c.C1312T	p.R438C	TGAAGCGGGTAAG	.	207.0	96.0	163.0	0.0	.	62	.	.	Atlas-SNP
KIAA1239	57495	hgsc.bcm.edu	hg19	4	37446811	37446811	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1239	NM_001144990	exon7	c.C3201T	p.S1067S	ACTGTCCGCCAAC	.	148.0	60.0	111.0	0.0	.	79	.	.	Atlas-SNP
RPL9	6133	hgsc.bcm.edu	hg19	4	39458043	39458043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RPL9	NM_000661	exon5	c.G374T	p.R125M	CGAACCCTGCGGA	.	608.0	247.0	690.0	0.0	.	16	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39891910	39891910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PDS5A	NM_001100399	exon17	c.G1845T	p.L615F	TCTTTCCAACAGA	.	78.0	27.0	74.0	0.0	.	114	.	.	Atlas-SNP
LIMCH1	22998	hgsc.bcm.edu	hg19	4	41621359	41621359	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LIMCH1	NM_014988	exon8	c.C837T	p.Y279Y	GGCCTACGTCCCC	.	111.0	54.0	95.0	0.0	.	233	.	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57181271	57181271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1211	NM_020722	exon8	c.C1603T	p.R535W	ATGCCCCGGCCCT	.	305.0	124.0	266.0	1.0	.	178	.	.	Atlas-SNP
REST	5978	hgsc.bcm.edu	hg19	4	57777460	57777460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	REST	NM_001193508	exon2	c.A656G	p.D219G	GCTGTGACCGCTG	.	152.0	61.0	199.0	0.0	.	104	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62849207	62849207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LPHN3	NM_015236	exon16	c.T2918C	p.F973S	AGGTTTTTGAGAG	.	163.0	12.0	155.0	0.0	.	800	.	.	Atlas-SNP
AMTN	401138	hgsc.bcm.edu	hg19	4	71394475	71394475	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AMTN	NM_212557	exon6	c.G330A	p.Q110Q	AGCCCAGGTAAAA	.	256.0	93.0	211.0	0.0	.	28	.	.	Atlas-SNP
IGJ	3512	hgsc.bcm.edu	hg19	4	71532164	71532164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IGJ	NM_144646	exon1	c.T44A	p.I15N	GCCTTAATAAAAA	.	223.0	11.0	209.0	0.0	.	13	.	.	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73149372	73149372	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADAMTS3	NM_014243	exon22	c.G3099A	p.L1033L	TCGTGCCAACACT	.	55.0	23.0	58.0	0.0	.	164	.	.	Atlas-SNP
PF4V1	5197	hgsc.bcm.edu	hg19	4	74719172	74719172	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PF4V1	NM_002620	exon1	c.C93T	p.F31F	CGCCTTCGCCAGA	.	227.0	86.0	230.0	0.0	.	8	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76811198	76811198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPEF2	NM_006239	exon5	c.T329C	p.V110A	TCGGGTACCTCTA	.	178.0	31.0	168.0	0.0	.	108	.	.	Atlas-SNP
CCDC158	339965	hgsc.bcm.edu	hg19	4	77300543	77300543	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC158	NM_001042784	exon8	c.A929T	p.N310I	TTTTGGTTTCTTG	.	83.0	39.0	79.0	0.0	.	114	.	.	Atlas-SNP
HELQ	113510	hgsc.bcm.edu	hg19	4	84358187	84358187	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HELQ	NM_133636	exon9	c.C1872T	p.G624G	GCCATTGCCAATA	.	179.0	76.0	137.0	0.0	.	95	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87622823	87622823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTPN13	NM_006264	exon7	c.G1064A	p.G355D	TCTTTGGCCCTCA	.	194.0	83.0	216.0	0.0	.	203	.	.	Atlas-SNP
HSD17B13	345275	hgsc.bcm.edu	hg19	4	88239575	88239575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HSD17B13	NM_178135	exon2	c.A224G	p.E75G	GCAGTTTCCTCCA	.	118.0	5.0	86.0	0.0	.	27	.	.	Atlas-SNP
SPP1	6696	hgsc.bcm.edu	hg19	4	88903791	88903791	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPP1	NM_001251830	exon8	c.C727T	p.L243L	AGTCAGCTGGATG	.	202.0	85.0	171.0	0.0	.	35	.	.	Atlas-SNP
FAM13A	10144	hgsc.bcm.edu	hg19	4	89689146	89689146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM13A	NM_014883	exon12	c.T1523C	p.M508T	TCAGACATCCATT	.	227.0	65.0	244.0	0.0	.	181	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	92519977	92519977	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001145065	exon11	c.C2472T	p.T824T	GGCCACCGTTGGG	.	168.0	54.0	153.0	0.0	.	.	.	.	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	hg19	4	103498147	103498147	+	Silent	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NFKB1	NM_003998	exon7	c.T522G	p.P174P	GCACCCTGACCTT	.	110.0	7.0	113.0	0.0	.	78	.	.	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	hg19	4	103528382	103528382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NFKB1	NM_003998	exon18	c.A2030G	p.D677G	GGGCTGACGTCAA	.	173.0	63.0	190.0	0.0	.	78	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107173107	107173107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TBCK	NM_001163436	exon6	c.T513A	p.D171E	CATGTGATCAGTG	.	115.0	36.0	108.0	0.0	.	89	.	.	Atlas-SNP
LRIT3	345193	hgsc.bcm.edu	hg19	4	110791477	110791477	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRIT3	NM_198506	exon4	c.G1572A	p.G524G	TGGTGGGAAGGAC	.	179.0	75.0	135.0	0.0	.	107	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126241913	126241913	+	Silent	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAT4	NM_024582	exon1	c.A4347C	p.A1449A	TGATGCAGACATT	.	253.0	104.0	278.0	0.0	.	1752	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126412250	126412250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAT4	NM_024582	exon17	c.C14273T	p.A4758V	CTCAGGCCATGGC	.	101.0	52.0	103.0	0.0	.	1752	.	.	Atlas-SNP
PET112	5188	hgsc.bcm.edu	hg19	4	152622627	152622627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PET112,NS,carcinoma,0,1	PET112	NM_004564	exon9	c.G1051A	p.A351T	ATGTGGCGTCGTA	.	88.0	35.0	106.0	0.0	.	43	.	.	Atlas-SNP
FBXW7	55294	hgsc.bcm.edu	hg19	4	153244121	153244121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FBXW7	NM_033632	exon12	c.A2036G	p.N679S	TTTGTGTTTGAGG	.	198.0	90.0	198.0	0.0	.	2157	.	.	Atlas-SNP
NPY2R	4887	hgsc.bcm.edu	hg19	4	156135360	156135360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NPY2R	NM_000910	exon2	c.C269T	p.A90V	TCATTGCCAATCT	.	80.0	6.0	76.0	0.0	.	87	.	.	Atlas-SNP
ETFDH	2110	hgsc.bcm.edu	hg19	4	159620153	159620153	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ETFDH	NM_004453	exon9	c.T987A	p.Y329X	AGACTATCAGAAT	.	373.0	145.0	403.0	0.0	.	57	.	.	Atlas-SNP
RAPGEF2	9693	hgsc.bcm.edu	hg19	4	160264434	160264434	+	Silent	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RAPGEF2	NM_014247	exon16	c.A2649T	p.G883G	TTCAGGAAATGAC	.	194.0	73.0	205.0	0.0	.	171	.	.	Atlas-SNP
NPY1R	4886	hgsc.bcm.edu	hg19	4	164246566	164246566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NPY1R	NM_000909	exon3	c.A1044T	p.E348D	TATTGTTTCATAA	.	140.0	53.0	140.0	0.0	.	72	.	.	Atlas-SNP
NPY5R	4889	hgsc.bcm.edu	hg19	4	164272694	164272694	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NPY5R	NM_006174	exon4	c.T1269C	p.I423I	TCCAATTCTATAT	.	121.0	47.0	131.0	0.0	.	101	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	166987010	166987010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TLL1	NM_012464	exon16	c.T2183C	p.F728S	ATTTTTTCTCAGG	.	134.0	49.0	135.0	0.0	.	194	.	.	Atlas-SNP
CLCN3	1182	hgsc.bcm.edu	hg19	4	170625277	170625277	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CLCN3	NM_001829	exon10	c.C1692T	p.V564V	TGAGGTCGGGGCT	.	133.0	50.0	109.0	0.0	.	85	.	.	Atlas-SNP
HAND2	9464	hgsc.bcm.edu	hg19	4	174450400	174450400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HAND2	NM_021973	exon1	c.A41G	p.H14R	TCGTGGTGCACCA	.	50.0	19.0	63.0	0.0	.	25	.	.	Atlas-SNP
NEIL3	55247	hgsc.bcm.edu	hg19	4	178283576	178283576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NEIL3	NM_018248	exon10	c.T1769C	p.F590S	ATTTTTTCCAGTG	.	258.0	113.0	248.0	0.0	.	89	.	.	Atlas-SNP
DCTD	1635	hgsc.bcm.edu	hg19	4	183815749	183815749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DCTD	NM_001012732	exon4	c.C287T	p.A96V	AGCTCCGCATGGC	.	95.0	23.0	101.0	0.0	.	30	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7706967	7706967	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADCY2	NM_020546	exon8	c.C1220A	p.S407X	TGTGGTCACATGA	.	141.0	32.0	131.0	0.0	.	337	.	.	Atlas-SNP
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7867406	7867406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FASTKD3	NM_024091	exon2	c.A791G	p.Q264R	CATGCCTGCAAGA	.	64.0	27.0	57.0	0.0	.	88	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13911493	13911493	+	Splice_Site	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAH5	NM_001369	exon13	c.1644+2T>G	.	CAACCTACATGAA	.	64.0	26.0	67.0	0.0	.	868	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16818199	16818199	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYO10	NM_012334	exon3	c.T198C	p.D66D	CATGTCATCCACG	.	67.0	29.0	77.0	0.0	.	198	.	.	Atlas-SNP
CDH10	1008	hgsc.bcm.edu	hg19	5	24509863	24509863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDH10	NM_006727	exon7	c.T1068A	p.D356E	ACGGGGATCTACA	.	246.0	57.0	238.0	0.0	.	391	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32088757	32088757	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PDZD2,NS,malignant_melanoma,0,1	PDZD2	NM_178140	exon19	c.G5203T	p.E1735X	GGCTTGGAACATG	.	122.0	48.0	157.0	0.0	.	306	.	.	Atlas-SNP
DNAJC21	134218	hgsc.bcm.edu	hg19	5	34935891	34935891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAJC21	NM_001012339	exon3	c.C268T	p.R90C	TTGCTACGCTATT	.	115.0	46.0	122.0	0.0	.	54	.	.	Atlas-SNP
UTP15	84135	hgsc.bcm.edu	hg19	5	72864403	72864403	+	Silent	SNP	C	C	T	rs112684902		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UTP15	NM_032175	exon4	c.C342T	p.P114P	GGCTCCCCTCAGG	.	104.0	43.0	89.0	0.0	.	30	.	C|0.500;T|0.500	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73128204	73128204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001080479	exon10	c.A1066G	p.T356A	CCCTCGACATTGC	.	96.0	7.0	108.0	0.0	.	.	.	.	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73179659	73179659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001080479	exon24	c.G3005A	p.R1002H	CTCAGCGTATTAC	.	144.0	61.0	175.0	0.0	.	.	.	.	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	hg19	5	74650434	74650434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HMGCR	NM_001130996	exon12	c.T1475C	p.V492A	GTGGTGTATCTAT	.	124.0	57.0	154.0	0.0	.	53	.	.	Atlas-SNP
AGGF1	55109	hgsc.bcm.edu	hg19	5	76342271	76342271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AGGF1	NM_018046	exon6	c.A970G	p.I324V	ATAGGCATTCATC	.	277.0	14.0	291.0	0.0	.	71	.	.	Atlas-SNP
AP3B1	8546	hgsc.bcm.edu	hg19	5	77423904	77423904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AP3B1	NM_003664	exon17	c.C1918T	p.P640S	CCTCTGGCCAATT	.	113.0	39.0	106.0	0.0	.	94	.	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79033682	79033682	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CMYA5	NM_153610	exon2	c.T9094A	p.S3032T	GAGATATCCACAG	.	440.0	179.0	473.0	0.0	.	643	.	.	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79734315	79734315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZFYVE16	NM_001105251	exon4	c.C1811T	p.T604I	AAAATACAATAGA	.	456.0	202.0	418.0	0.0	.	100	.	.	Atlas-SNP
NR2F1	7025	hgsc.bcm.edu	hg19	5	92923770	92923770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NR2F1	NM_005654	exon2	c.G611A	p.G204D	GCTACGGCAGCCA	.	193.0	80.0	179.0	0.0	.	56	.	.	Atlas-SNP
TRIM36	55521	hgsc.bcm.edu	hg19	5	114462349	114462349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIM36	NM_018700	exon10	c.T2038C	p.Y680H	TATCATAGAAATC	.	136.0	62.0	141.0	0.0	.	126	.	.	Atlas-SNP
TMED7-TICAM2	100302736	hgsc.bcm.edu	hg19	5	114916490	114916490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001164468	exon4	c.C971T	p.T324M	AGGGACGTATAGA	.	123.0	42.0	125.0	0.0	.	.	.	.	Atlas-SNP
SRFBP1	153443	hgsc.bcm.edu	hg19	5	121356208	121356208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SRFBP1	NM_152546	exon6	c.T778A	p.Y260N	AAGGAATATTTTG	.	300.0	118.0	284.0	0.0	.	47	.	.	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	hg19	5	131007515	131007515	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FNIP1	NM_133372	exon14	c.T2622C	p.C874C	TTTTGTACACAAT	.	103.0	6.0	114.0	0.0	.	104	.	.	Atlas-SNP
KIF3A	11127	hgsc.bcm.edu	hg19	5	132069913	132069913	+	Silent	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIF3A	NM_007054	exon2	c.A264T	p.V88V	TTCAAGTACAGAA	.	177.0	71.0	183.0	0.0	.	117	.	.	Atlas-SNP
SOWAHA	134548	hgsc.bcm.edu	hg19	5	132150795	132150795	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_175873	exon1	c.A1482G	p.R494R	GGCCCGAGGCTTG	.	103.0	43.0	82.0	0.0	.	.	.	.	Atlas-SNP
SHROOM1	134549	hgsc.bcm.edu	hg19	5	132159057	132159057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SHROOM1	NM_133456	exon6	c.G2111A	p.R704Q	ATGAACCGGCTGA	.	65.0	24.0	72.0	0.0	.	35	.	.	Atlas-SNP
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137228299	137228299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PKD2L2	NM_001258448	exon3	c.G264T	p.W88C	TTTTTGGAAGGTA	.	125.0	52.0	152.0	0.0	.	68	.	.	Atlas-SNP
APBB3	10307	hgsc.bcm.edu	hg19	5	139939980	139939980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	APBB3	NM_006051	exon11	c.G1163T	p.G388V	TGACGGCCCAGGT	.	223.0	52.0	213.0	0.0	.	34	.	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	hg19	5	140167660	140167660	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDHA1	NM_031410	exon1	c.C1785T	p.R595R	GGTGCGCGCAGTG	.	153.0	60.0	126.0	0.0	.	387	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140237443	140237443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDHA10	NM_031859	exon1	c.G1810T	p.A604S	TACAACGCGTGGC	.	141.0	65.0	165.0	0.0	.	358	.	.	Atlas-SNP
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140347456	140347456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDHAC2	NM_031883	exon1	c.G1105A	p.D369N	CTCACGGACCTGT	.	61.0	17.0	68.0	0.0	.	142	.	.	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	hg19	5	140605037	140605037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDHB14	NM_018934	exon1	c.G1960A	p.A654T	CGCTCGGCCACCG	.	46.0	16.0	59.0	0.0	.	132	.	.	Atlas-SNP
PCDHGA7	56108	hgsc.bcm.edu	hg19	5	140764204	140764204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PCDHGA7,NS,carcinoma,0,1	PCDHGA7	NM_032087	exon1	c.C1738T	p.R580C	GCACCCCGCTCCG	.	129.0	50.0	103.0	0.0	.	130	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	hg19	5	140955840	140955840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DIAPH1	NM_005219	exon14	c.A1418C	p.K473T	TCCACCTTTGTCT	.	190.0	76.0	228.0	0.0	.	64	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141336556	141336556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDH12	NM_016580	exon1	c.G861T	p.M287I	TGGAGGCATGTGC	.	92.0	8.0	124.0	0.0	.	133	.	.	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145634549	145634549	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBM27	NM_018989	exon10	c.T1488C	p.I496I	TAGTATTACTAGT	.	105.0	30.0	97.0	0.0	.	119	.	.	Atlas-SNP
C5orf46	389336	hgsc.bcm.edu	hg19	5	147281302	147281302	+	Silent	SNP	G	G	A	rs368375161		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C5orf46	NM_206966	exon2	c.C105T	p.D35D	CGAGTCGTCTGGC	.	195.0	73.0	178.0	0.0	.	8	.	.	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	hg19	5	149324081	149324081	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PDE6A	NM_000440	exon1	c.G156A	p.P52P	GCTGCTCGGGGAG	.	116.0	43.0	128.0	0.0	.	98	.	.	Atlas-SNP
HMGXB3	22993	hgsc.bcm.edu	hg19	5	149421470	149421470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HMGXB3	NM_014983	exon15	c.G2668A	p.A890T	GGTGTGGCCCCCA	.	88.0	24.0	106.0	0.0	.	31	.	.	Atlas-SNP
NDST1	3340	hgsc.bcm.edu	hg19	5	149901211	149901211	+	Missense_Mutation	SNP	G	G	A	rs141135213		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NDST1	NM_001543	exon2	c.G395A	p.R132H	GTGGCCGCTTCGC	.	126.0	46.0	160.0	0.0	.	79	.	G|1.000;A|0.000	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	hg19	5	150660598	150660598	+	Missense_Mutation	SNP	C	C	T	rs201585244	by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC36A3	NM_001145017	exon10	c.G1244A	p.R415H	GCTGAGCGGACAG	.	122.0	39.0	130.0	0.0	.	54	.	C|1.000;A|0.000	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153030021	153030021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GRIA1	NM_001258021	exon4	c.C622T	p.R208W	AAGGAGCGGCTGG	.	132.0	48.0	151.0	0.0	.	321	.	.	Atlas-SNP
TIMD4	91937	hgsc.bcm.edu	hg19	5	156353300	156353300	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TIMD4	NM_138379	exon6	c.C868T	p.Q290X	TGTTCTGCTCAGG	.	63.0	19.0	70.0	0.0	.	94	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	hg19	5	156816337	156816337	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CYFIP2	NM_001037332	exon29	c.C3348T	p.G1116G	CAATGGCGTCATG	.	79.0	18.0	71.0	0.0	.	354	.	.	Atlas-SNP
NUDCD2	134492	hgsc.bcm.edu	hg19	5	162887001	162887001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NUDCD2	NM_145266	exon1	c.G56A	p.G19D	CACTGGCCCCACG	.	408.0	163.0	413.0	0.0	.	12	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169116263	169116263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DOCK2	NM_004946	exon9	c.T769C	p.Y257H	GAGAACTACCTAG	.	90.0	35.0	74.0	0.0	.	389	.	.	Atlas-SNP
GPRIN1	114787	hgsc.bcm.edu	hg19	5	176025680	176025680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	GPRIN1,colon,carcinoma,0,1	GPRIN1	NM_052899	exon2	c.C1156T	p.R386C	CAGGACGCCCCTC	.	112.0	50.0	132.0	1.0	.	77	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176520464	176520464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FGFR4	NM_002011	exon10	c.C1309T	p.R437C	GGCGTGCGTCTCT	.	78.0	28.0	94.0	0.0	.	174	.	.	Atlas-SNP
PFN3	345456	hgsc.bcm.edu	hg19	5	176827232	176827232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PFN3	NM_001029886	exon1	c.G346A	p.V116I	CATGTACGCCGCG	.	195.0	75.0	249.0	0.0	.	4	.	.	Atlas-SNP
ZNF354B	117608	hgsc.bcm.edu	hg19	5	178310742	178310742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF354B	NM_058230	exon5	c.T1289A	p.I430K	ACCGAATAATTCA	.	214.0	79.0	235.0	0.0	.	67	.	.	Atlas-SNP
MAML1	9794	hgsc.bcm.edu	hg19	5	179201140	179201140	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAML1	NM_014757	exon5	c.G2313A	p.P771P	GCCCCCGCCACAG	.	52.0	18.0	70.0	0.0	.	118	.	.	Atlas-SNP
BTNL9	153579	hgsc.bcm.edu	hg19	5	180472566	180472566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BTNL9	NM_152547	exon2	c.T77C	p.L26P	TGCACCTCCTCCT	.	45.0	15.0	49.0	0.0	.	58	.	.	Atlas-SNP
RREB1	6239	hgsc.bcm.edu	hg19	6	7231535	7231535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RREB1	NM_001003700	exon10	c.T3203C	p.I1068T	CCTCCATTGCCCA	.	73.0	54.0	96.0	0.0	.	242	.	.	Atlas-SNP
MBOAT1	154141	hgsc.bcm.edu	hg19	6	20152967	20152967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MBOAT1	NM_001080480	exon2	c.T133C	p.F45L	CAGCAAACAGAGC	.	198.0	25.0	191.0	0.0	.	48	.	.	Atlas-SNP
HDGFL1	154150	hgsc.bcm.edu	hg19	6	22570437	22570437	+	Silent	SNP	C	C	T	rs371376684	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HDGFL1	NM_138574	exon1	c.C633T	p.G211G	GCCGGGCCTGGTC	.	73.0	13.0	54.0	0.0	.	33	.	.	Atlas-SNP
LRRC16A	55604	hgsc.bcm.edu	hg19	6	25538179	25538179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRC16A	NM_001173977	exon25	c.C2164T	p.R722W	GCAGAGCGGCTCA	.	57.0	11.0	48.0	0.0	.	168	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	hg19	6	26056197	26056197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HIST1H1C	NM_005319	exon1	c.A460G	p.T154A	TCGGTGTTTTCTT	.	146.0	40.0	118.0	0.0	.	80	.	.	Atlas-SNP
ABT1	29777	hgsc.bcm.edu	hg19	6	26598247	26598247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABT1	NM_013375	exon2	c.G347A	p.R116H	ACAAGCGCATAGC	.	394.0	114.0	345.0	0.0	.	39	.	.	Atlas-SNP
HIST1H4I	8294	hgsc.bcm.edu	hg19	6	27107217	27107217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HIST1H4I	NM_003495	exon1	c.G130A	p.V44M	GGCGGCGTGAAGC	.	254.0	41.0	202.0	0.0	.	26	.	.	Atlas-SNP
OR12D2	26529	hgsc.bcm.edu	hg19	6	29365183	29365183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR12D2	NM_013936	exon1	c.C707T	p.A236V	GTAAAGCACTGTC	.	140.0	48.0	116.0	0.0	.	42	.	.	Atlas-SNP
HLA-G	3135	hgsc.bcm.edu	hg19	6	29797328	29797328	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HLA-G	NM_002127	exon5	c.C753T	p.D251D	CCAGGACGTGGAG	.	197.0	55.0	129.0	0.0	.	90	.	.	Atlas-SNP
ZNRD1	30834	hgsc.bcm.edu	hg19	6	30029708	30029708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_170783	exon2	c.G160A	p.V54I	GGGAAGGTTGTGA	.	186.0	65.0	149.0	0.0	.	.	.	.	Atlas-SNP
RNF39	80352	hgsc.bcm.edu	hg19	6	30039027	30039027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RNF39	NM_025236	exon4	c.G1124A	p.R375H	GCCACGCGGCCCC	.	224.0	9.0	148.0	0.0	.	27	.	.	Atlas-SNP
DDR1	780	hgsc.bcm.edu	hg19	6	30864468	30864468	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DDR1	NM_013994	exon12	c.C1695T	p.S565S	GAACAGCGTCCCC	.	309.0	60.0	250.0	0.0	.	213	.	.	Atlas-SNP
GTF2H4	2968	hgsc.bcm.edu	hg19	6	30881751	30881751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GTF2H4	NM_001517	exon14	c.T1380G	p.H460Q	GAAACATAGCTCC	.	283.0	86.0	191.0	0.0	.	38	.	.	Atlas-SNP
CDSN	1041	hgsc.bcm.edu	hg19	6	31084588	31084588	+	Silent	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDSN	NM_001264	exon2	c.T804G	p.V268V	ACCTTGAACCACT	.	107.0	24.0	61.0	0.0	.	48	.	.	Atlas-SNP
DDX39B	7919	hgsc.bcm.edu	hg19	6	31507027	31507027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DDX39B,face,carcinoma,0,1	DDX39B	NM_004640	exon3	c.C236T	p.A79V	AGAATGGCCTGAG	.	143.0	48.0	92.0	0.0	.	38	.	.	Atlas-SNP
AGPAT1	10554	hgsc.bcm.edu	hg19	6	32138331	32138331	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AGPAT1	NM_006411	exon4	c.C381T	p.R127R	TAGCTCGCGCTTG	.	106.0	28.0	84.0	0.0	.	22	.	.	Atlas-SNP
AGER	177	hgsc.bcm.edu	hg19	6	32149317	32149317	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AGER	NM_001206936	exon9	c.T1005C	p.G335G	TTGTTGACCATCC	.	154.0	43.0	115.0	0.0	.	15	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33608281	33608281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITPR3	NM_002224	exon2	c.T110C	p.V37A	GCTGTGTGGTGGA	.	137.0	43.0	114.0	0.0	.	409	.	.	Atlas-SNP
IP6K3	117283	hgsc.bcm.edu	hg19	6	33693356	33693356	+	Silent	SNP	C	C	T	rs200747722		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IP6K3	NM_001142883	exon6	c.G627A	p.T209T	GGGATGCGTGTAC	.	119.0	36.0	118.0	0.0	.	52	.	C|0.999;T|0.001	Atlas-SNP
C6orf89	221477	hgsc.bcm.edu	hg19	6	36867219	36867219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C6orf89	NM_152734	exon2	c.A20T	p.D7V	TGGAAGACATGGA	.	54.0	23.0	113.0	0.0	.	39	.	.	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	hg19	6	42200601	42200601	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRERF1	NM_033502	exon17	c.C3096T	p.G1032G	GGCATGGCCATTC	.	127.0	19.0	55.0	0.0	.	124	.	.	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	hg19	6	42796557	42796557	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_015349	exon5	c.G486A	p.T162T	TCAGACGCTGCAG	.	313.0	76.0	109.0	0.0	.	.	.	.	Atlas-SNP
PPP2R5D	5528	hgsc.bcm.edu	hg19	6	42975948	42975948	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPP2R5D	NM_006245	exon8	c.C867T	p.Y289Y	CATCTACGAGACG	.	281.0	36.0	133.0	0.0	.	47	.	.	Atlas-SNP
MRPL2	51069	hgsc.bcm.edu	hg19	6	43023917	43023917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MRPL2	NM_015950	exon4	c.T422C	p.L141P	GCAACCAGAGCTA	.	172.0	67.0	72.0	0.0	.	30	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43190596	43190596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CUL9	NM_015089	exon38	c.A7112G	p.N2371S	CAGAGAACCTGGA	.	207.0	49.0	94.0	0.0	.	248	.	.	Atlas-SNP
SLC22A7	10864	hgsc.bcm.edu	hg19	6	43267678	43267678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC22A7	NM_153320	exon4	c.T701C	p.V234A	CTGGAGTCCTGAG	.	325.0	31.0	145.0	0.0	.	69	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43402386	43402386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABCC10	NM_001198934	exon4	c.C1408T	p.R470W	GGCATTCGGGTCA	.	193.0	21.0	53.0	0.0	.	118	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43412531	43412531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ABCC10,bladder,carcinoma,0,1	ABCC10	NM_001198934	exon13	c.C2695T	p.R899W	GCCACGCGGAACG	.	139.0	24.0	55.0	1.0	.	118	.	.	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	hg19	6	43526266	43526266	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	XPO5	NM_020750	exon12	c.C1284T	p.S428S	CTCATCGCTATCA	.	459.0	49.0	168.0	0.0	.	79	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RUNX2	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	109.0	5.0	57.0	0.0	.	128	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46656045	46656045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TDRD6	NM_001168359	exon1	c.G180T	p.W60C	CCAGTGGGCGCTG	.	103.0	11.0	63.0	0.0	.	205	.	.	Atlas-SNP
GPR116	221395	hgsc.bcm.edu	hg19	6	46874483	46874483	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	GPR116,colon,carcinoma,0,1	GPR116	NM_015234	exon2	c.G17C	p.R6T	GTGGTTCTCCTTG	.	222.0	74.0	154.0	0.0	.	133	.	.	Atlas-SNP
GPR115	221393	hgsc.bcm.edu	hg19	6	47682484	47682484	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPR115	NM_153838	exon6	c.A1503G	p.G501G	TTATGGAATATTG	.	155.0	54.0	75.0	0.0	.	140	.	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70866035	70866035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL19A1	NM_001858	exon32	c.G2096A	p.C699Y	GCAACTGCCAAGC	.	72.0	6.0	152.0	0.0	.	232	.	.	Atlas-SNP
B3GAT2	135152	hgsc.bcm.edu	hg19	6	71603972	71603972	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	B3GAT2,NS,carcinoma,0,1	B3GAT2	NM_080742	exon2	c.C595T	p.R199X	TGGTTCGCATCTA	.	117.0	99.0	186.0	0.0	.	33	.	.	Atlas-SNP
SYNCRIP	10492	hgsc.bcm.edu	hg19	6	86333797	86333797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SYNCRIP	NM_006372	exon7	c.A700G	p.I234V	CACCAATATGTTT	.	55.0	5.0	79.0	0.0	.	80	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138576784	138576784	+	Missense_Mutation	SNP	G	G	A	rs370057378		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	KIAA1244_ENST00000251691,NS,carcinoma,0,2	KIAA1244	NM_020340	exon10	c.G982A	p.E328K	GCAGCCGAGCTGG	.	52.0	26.0	103.0	0.0	.	236	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138584499	138584499	+	Missense_Mutation	SNP	G	G	A	rs376236619		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1244	NM_020340	exon12	c.G1879A	p.V627M	TCCGACGTGTCAG	.	86.0	33.0	124.0	0.0	.	236	.	.	Atlas-SNP
ESR1	2099	hgsc.bcm.edu	hg19	6	152332874	152332874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ESR1	NM_000125	exon5	c.C1180T	p.R394C	GTCTGGCGCTCCA	.	69.0	17.0	117.0	0.0	.	94	.	.	Atlas-SNP
TFB1M	51106	hgsc.bcm.edu	hg19	6	155578991	155578991	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TFB1M	NM_016020	exon7	c.C1020T	p.D340D	CTCTGCGTCATCC	.	54.0	27.0	73.0	0.0	.	30	.	.	Atlas-SNP
TTLL2	83887	hgsc.bcm.edu	hg19	6	167754936	167754936	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TTLL2	NM_031949	exon3	c.G1548A	p.T516T	GCACACGCCTCAC	.	61.0	40.0	135.0	0.0	.	82	.	.	Atlas-SNP
PRKAR1B	5575	hgsc.bcm.edu	hg19	7	618965	618965	+	Silent	SNP	G	G	T	rs199622718	bycluster;by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PRKAR1B	NM_001164760	exon9	c.C819A	p.P273P	CTGGACGGGCTCC	.	140.0	42.0	103.0	0.0	.	32	.	G|1.000;A|0.000	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	hg19	7	1518116	1518116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	INTS1	NM_001080453	exon33	c.G4516A	p.E1506K	GGGCCTCGGCCAG	.	273.0	145.0	253.0	0.0	.	145	.	.	Atlas-SNP
AP5Z1	9907	hgsc.bcm.edu	hg19	7	4825084	4825084	+	Splice_Site	SNP	G	G	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_014855	exon8	c.969+1G>C	.	AAAGCTGTAAGTG	.	119.0	31.0	101.0	0.0	.	.	.	.	Atlas-SNP
AIMP2	7965	hgsc.bcm.edu	hg19	7	6054890	6054890	+	Silent	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AIMP2	NM_006303	exon2	c.A249C	p.P83P	AACACCAGATGCA	.	219.0	68.0	183.0	0.0	.	32	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12381716	12381716	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VWDE	NM_001135924	exon23	c.A4239G	p.K1413K	GCCAGGTTTGCAC	.	93.0	47.0	79.0	0.0	.	123	.	.	Atlas-SNP
AVL9	23080	hgsc.bcm.edu	hg19	7	32612909	32612909	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AVL9	NM_015060	exon12	c.C1449T	p.H483H	GAGGCACGTGACT	.	209.0	119.0	177.0	0.0	.	66	.	.	Atlas-SNP
SEPT7	989	hgsc.bcm.edu	hg19	7	35913370	35913370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SEPT7	NM_001011553	exon5	c.C494A	p.A165D	TCATTGCTCCTTC	.	212.0	76.0	136.0	0.0	.	24	.	.	Atlas-SNP
STK17A	9263	hgsc.bcm.edu	hg19	7	43664380	43664380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STK17A	NM_004760	exon7	c.C1184T	p.S395F	CCATTTCCAAACG	.	118.0	40.0	163.0	0.0	.	31	.	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	hg19	7	45743231	45743231	+	Silent	SNP	C	C	T	rs138836914		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADCY1	NM_021116	exon16	c.C2604T	p.G868G	GGTGGGCGTCATG	.	148.0	47.0	165.0	0.0	.	187	.	C|1.000;T|0.000	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50467747	50467747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IKZF1	NM_006060	exon8	c.C982T	p.R328C	TCCCTGCGCCCGC	.	140.0	55.0	124.0	0.0	.	613	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53103947	53103947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	POM121L12,NS,carcinoma,-2,1	POM121L12	NM_182595	exon1	c.C583T	p.P195S	GACGGGCCGTTGT	.	63.0	23.0	72.0	0.0	.	146	.	.	Atlas-SNP
GUSB	2990	hgsc.bcm.edu	hg19	7	65440028	65440028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GUSB	NM_000181	exon6	c.C943A	p.P315T	ACACAGGCCCCAG	.	82.0	8.0	117.0	0.0	.	52	.	.	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	hg19	7	70254962	70254962	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AUTS2	NM_015570	exon19	c.C2760T	p.D920D	GAAGGACGGGCAC	.	89.0	36.0	108.0	0.0	.	173	.	.	Atlas-SNP
DTX2	113878	hgsc.bcm.edu	hg19	7	76131756	76131756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DTX2	NM_001102594	exon8	c.T1372C	p.Y458H	GCCATGTACTGCA	.	110.0	42.0	128.0	0.0	.	64	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81579773	81579773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CACNA2D1	NM_000722	exon39	c.T3211C	p.Y1071H	TGATATACCACAG	.	111.0	38.0	114.0	0.0	.	191	.	.	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92970851	92970851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC132	NM_017667	exon23	c.A2171G	p.Y724C	CGCTGTATGGGTT	.	143.0	7.0	132.0	0.0	.	136	.	.	Atlas-SNP
BAIAP2L1	55971	hgsc.bcm.edu	hg19	7	97946608	97946608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BAIAP2L1	NM_018842	exon6	c.C409A	p.Q137K	CAGCTTGGGATTT	.	84.0	26.0	137.0	0.0	.	61	.	.	Atlas-SNP
TAF6	6878	hgsc.bcm.edu	hg19	7	99706132	99706132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TAF6	NM_001190415	exon13	c.G1427A	p.R476H	GGTGGGCGCAGCT	.	100.0	43.0	84.0	0.0	.	55	.	.	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	hg19	7	100084550	100084550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_173564	exon3	c.G175T	p.G59C	AGGATGGGTTTCA	.	162.0	11.0	160.0	0.0	.	.	.	.	Atlas-SNP
AGFG2	3268	hgsc.bcm.edu	hg19	7	100159952	100159952	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	AGFG2,NS,carcinoma,0,2	AGFG2	NM_006076	exon7	c.C948T	p.D316D	CGCAGACGTGGGC	.	132.0	56.0	156.0	0.0	.	44	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100678585	100678585	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MUC17	NM_001040105	exon3	c.C3888T	p.S1296S	GGCTAGCACCCTT	.	49.0	24.0	83.0	0.0	.	804	.	.	Atlas-SNP
SLC26A5	375611	hgsc.bcm.edu	hg19	7	103014890	103014890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SLC26A5,NS,malignant_melanoma,0,1	SLC26A5	NM_198999	exon20	c.G2191A	p.E731K	AGTCCTCCTGGGA	.	89.0	39.0	116.0	0.0	.	231	.	.	Atlas-SNP
DOCK4	9732	hgsc.bcm.edu	hg19	7	111584884	111584884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DOCK4	NM_014705	exon10	c.G826A	p.V276M	TGTGCACGGTGAT	.	118.0	49.0	89.0	0.0	.	365	.	.	Atlas-SNP
AASS	10157	hgsc.bcm.edu	hg19	7	121733126	121733126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AASS	NM_005763	exon16	c.C1742T	p.P581L	AGTGCTGGTGTGA	.	162.0	58.0	191.0	0.0	.	123	.	.	Atlas-SNP
STRA8	346673	hgsc.bcm.edu	hg19	7	134931258	134931258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STRA8	NM_182489	exon6	c.C536T	p.A179V	TCTCCGCGGCCAT	.	114.0	39.0	114.0	0.0	.	39	.	.	Atlas-SNP
FAM131B	9715	hgsc.bcm.edu	hg19	7	143055964	143055964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM131B	NM_001031690	exon5	c.A422G	p.Y141C	TCGGAGTAGGCAT	.	68.0	12.0	90.0	0.0	.	104	.	.	Atlas-SNP
TAS2R41	259287	hgsc.bcm.edu	hg19	7	143175777	143175777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TAS2R41	NM_176883	exon1	c.C812T	p.A271V	AAATTGCAGTCTA	.	111.0	42.0	127.0	0.0	.	43	.	.	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	hg19	7	150648807	150648807	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCNH2	NM_000238	exon7	c.G1674A	p.A558A	GATGAGCGCAAAG	.	87.0	33.0	97.0	0.0	.	157	.	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150772569	150772569	+	Missense_Mutation	SNP	C	C	T	rs370805035		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SLC4A2,NS,carcinoma,0,1	SLC4A2	NM_003040	exon20	c.C3275T	p.T1092M	GGGTGACGGGGCT	.	10.0	6.0	20.0	0.0	.	98	.	.	Atlas-SNP
FASTK	10922	hgsc.bcm.edu	hg19	7	150776623	150776623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FASTK	NM_006712	exon2	c.A469G	p.T157A	GGATGGTGTGAAT	.	246.0	98.0	259.0	1.0	.	29	.	.	Atlas-SNP
SMARCD3	6604	hgsc.bcm.edu	hg19	7	150938679	150938679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SMARCD3	NM_001003801	exon8	c.C838T	p.R280C	CTGAGCGGCTCTG	.	69.0	33.0	68.0	0.0	.	92	.	.	Atlas-SNP
RHEB	6009	hgsc.bcm.edu	hg19	7	151188049	151188049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RHEB	NM_005614	exon2	c.A104G	p.Y35C	GGATCGTAGGAGT	.	99.0	5.0	106.0	0.0	.	30	.	.	Atlas-SNP
LMBR1	64327	hgsc.bcm.edu	hg19	7	156521354	156521354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LMBR1	NM_022458	exon11	c.T899G	p.L300R	AGAAGGAGAACCA	.	280.0	93.0	314.0	0.0	.	35	.	.	Atlas-SNP
FBXO25	26260	hgsc.bcm.edu	hg19	8	363195	363195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FBXO25	NM_183420	exon2	c.G116A	p.C39Y	ACCGTTGTAACAT	.	175.0	52.0	179.0	0.0	.	25	.	.	Atlas-SNP
CLN8	2055	hgsc.bcm.edu	hg19	8	1719730	1719730	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CLN8	NM_018941	exon2	c.G510A	p.T170T	GAGCACGCCCTTT	.	47.0	6.0	61.0	0.0	.	64	.	.	Atlas-SNP
ARHGEF10	9639	hgsc.bcm.edu	hg19	8	1842674	1842674	+	Missense_Mutation	SNP	C	C	T	rs144726787		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGEF10	NM_014629	exon13	c.C1376T	p.A459V	AGATCGCGCTGGC	.	119.0	29.0	116.0	0.0	.	255	.	C|1.000;T|0.000	Atlas-SNP
AGPAT5	55326	hgsc.bcm.edu	hg19	8	6590108	6590108	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AGPAT5	NM_018361	exon4	c.T432C	p.S144S	GCGCAGTGCCAAA	.	569.0	37.0	539.0	0.0	.	31	.	.	Atlas-SNP
KIAA1456	57604	hgsc.bcm.edu	hg19	8	12879351	12879351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1456	NM_020844	exon5	c.A1163G	p.N388S	ATTTCAACCCAGA	.	156.0	48.0	154.0	0.0	.	20	.	.	Atlas-SNP
PPP2R2A	5520	hgsc.bcm.edu	hg19	8	26223877	26223877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPP2R2A	NM_001177591	exon9	c.A1049G	p.D350G	AAAATGACTGCAT	.	106.0	34.0	112.0	0.0	.	44	.	.	Atlas-SNP
SCARA3	51435	hgsc.bcm.edu	hg19	8	27516318	27516318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SCARA3	NM_182826	exon5	c.C631A	p.Q211K	CTCACCCAGGAGT	.	152.0	7.0	123.0	0.0	.	93	.	.	Atlas-SNP
ESCO2	157570	hgsc.bcm.edu	hg19	8	27646450	27646450	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ESCO2	NM_001017420	exon7	c.G1218A	p.Q406Q	AATGCAGCATGTA	.	108.0	40.0	82.0	0.0	.	50	.	.	Atlas-SNP
PBK	55872	hgsc.bcm.edu	hg19	8	27667883	27667883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PBK	NM_018492	exon8	c.A908T	p.E303V	GGGTCTTCATTAG	.	103.0	51.0	114.0	0.0	.	29	.	.	Atlas-SNP
EXTL3	2137	hgsc.bcm.edu	hg19	8	28608212	28608212	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EXTL3	NM_001440	exon7	c.T2589C	p.P863P	ATGCCCTCAGGCC	.	48.0	21.0	66.0	0.0	.	83	.	.	Atlas-SNP
TMEM66	51669	hgsc.bcm.edu	hg19	8	29924389	29924389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM66	NM_016127	exon4	c.C746T	p.A249V	GTAAAAGCACTGC	.	183.0	19.0	165.0	0.0	.	23	.	.	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	hg19	8	35541099	35541099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UNC5D	NM_080872	exon5	c.C605A	p.S202Y	TTGACTCTGAACA	.	121.0	53.0	124.0	0.0	.	393	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38184373	38184373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WHSC1L1	NM_017778	exon7	c.G1583A	p.G528E	CCAATTCCCTTTA	.	87.0	34.0	73.0	0.0	.	137	.	.	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	hg19	8	53555118	53555118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RB1CC1	NM_001083617	exon18	c.G4130A	p.R1377H	AGCAAACGAGCTC	.	103.0	30.0	110.0	0.0	.	163	.	.	Atlas-SNP
NSMAF	8439	hgsc.bcm.edu	hg19	8	59511898	59511898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NSMAF	NM_001144772	exon19	c.G1571A	p.S524N	TCTTTGCTCTTCT	.	89.0	37.0	93.0	0.0	.	156	.	.	Atlas-SNP
PDE7A	5150	hgsc.bcm.edu	hg19	8	66651737	66651737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PDE7A	NM_001242318	exon6	c.G595T	p.V199F	ACTTACCTAAAAA	.	239.0	92.0	268.0	0.0	.	78	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69020402	69020402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PREX2	NM_024870	exon24	c.T2774A	p.I925N	CTAAAATCTCCCC	.	114.0	40.0	87.0	0.0	.	614	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77776151	77776151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZFHX4	NM_024721	exon11	c.T10201C	p.Y3401H	GTCAAGTATGAGT	.	71.0	31.0	70.0	0.0	.	878	.	.	Atlas-SNP
PSKH2	85481	hgsc.bcm.edu	hg19	8	87076416	87076416	+	Silent	SNP	G	G	A	rs376242267		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PSKH2,rectum,carcinoma,0,1	PSKH2	NM_033126	exon2	c.C630T	p.S210S	TTTCCCGGAGTAT	.	130.0	52.0	127.0	0.0	.	79	.	.	Atlas-SNP
ESRP1	54845	hgsc.bcm.edu	hg19	8	95680213	95680213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ESRP1	NM_001122827	exon10	c.A968G	p.E323G	CCAAGGAAAATCA	.	121.0	45.0	131.0	0.0	.	148	.	.	Atlas-SNP
CTHRC1	115908	hgsc.bcm.edu	hg19	8	104394725	104394725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CTHRC1	NM_138455	exon4	c.A629T	p.D210V	TAGTGGATGTTGC	.	121.0	48.0	152.0	0.0	.	29	.	.	Atlas-SNP
DCAF13	25879	hgsc.bcm.edu	hg19	8	104447934	104447934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DCAF13	NM_015420	exon8	c.A1322G	p.D441G	ATGTGGATTACTC	.	63.0	24.0	46.0	0.0	.	66	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124340665	124340665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATAD2	NM_014109	exon25	c.T3633A	p.D1211E	ATTATGATCTACA	.	141.0	58.0	124.0	0.0	.	160	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124383532	124383532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATAD2	NM_014109	exon5	c.C583T	p.R195C	GTCTACGCATCTT	.	198.0	71.0	212.0	0.0	.	160	.	.	Atlas-SNP
TMEM71	137835	hgsc.bcm.edu	hg19	8	133764034	133764034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM71	NM_144649	exon4	c.T311G	p.V104G	TACCTAACTAAGT	.	119.0	40.0	126.0	0.0	.	55	.	.	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	hg19	8	133848922	133848922	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	Q86U89_HUMAN,NS,carcinoma,0,4	PHF20L1	NM_016018	exon16	c.C2047T	p.R683X	ATTGTGCGATGTA	.	158.0	55.0	159.0	0.0	.	129	.	.	Atlas-SNP
LYNX1	66004	hgsc.bcm.edu	hg19	8	143857040	143857040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LYNX1	NM_177477	exon3	c.T125C	p.M42T	GCAACCATAGCCG	.	99.0	40.0	116.0	0.0	.	40	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144809309	144809309	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM83H	NM_198488	exon5	c.G2322A	p.A774A	TGGGGCCGCCACC	.	952.0	247.0	914.0	1.0	.	68	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144812634	144812634	+	Missense_Mutation	SNP	G	G	A	rs371078447		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM83H	NM_198488	exon2	c.C119T	p.S40L	GCCTCCGAGCCAC	.	1310.0	554.0	1440.0	2.0	.	68	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144942558	144942558	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPPK1	NM_031308	exon1	c.A4864T	p.K1622X	TCAGCTTCCGGTT	.	90.0	15.0	73.0	0.0	.	199	.	.	Atlas-SNP
SPATC1	375686	hgsc.bcm.edu	hg19	8	145095689	145095689	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPATC1	NM_001134374	exon3	c.C987T	p.S329S	CACCTCCCCCACG	.	125.0	40.0	134.0	0.0	.	77	.	.	Atlas-SNP
VPS28	51160	hgsc.bcm.edu	hg19	8	145649444	145649444	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VPS28	NM_016208	exon9	c.C528T	p.G176G	CTGGCGGCCCTCA	.	139.0	62.0	145.0	0.0	.	23	.	.	Atlas-SNP
FOXH1	8928	hgsc.bcm.edu	hg19	8	145700399	145700399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FOXH1	NM_003923	exon3	c.T320C	p.F107S	GCCCAGAAGTTGC	.	96.0	42.0	72.0	0.0	.	17	.	.	Atlas-SNP
LRRC14	9684	hgsc.bcm.edu	hg19	8	145746113	145746113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRC14	NM_001272036	exon4	c.G821A	p.R274H	ACTTCCGCTACTT	.	19.0	9.0	18.0	0.0	.	25	.	.	Atlas-SNP
LRRC14	9684	hgsc.bcm.edu	hg19	8	145746554	145746554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRC14	NM_001272036	exon5	c.T1174C	p.C392R	ACTCAGTGCGCCA	.	49.0	15.0	71.0	0.0	.	25	.	.	Atlas-SNP
LRRC24	441381	hgsc.bcm.edu	hg19	8	145750253	145750253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRC24	NM_001024678	exon2	c.T106C	p.C36R	CGCCACACTCCAC	.	67.0	21.0	62.0	0.0	.	11	.	.	Atlas-SNP
C8orf82	414919	hgsc.bcm.edu	hg19	8	145752948	145752948	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C8orf82	NM_001001795	exon3	c.G429A	p.A143A	CAGGCGCGCCGGC	.	8.0	7.0	15.0	0.0	.	7	.	.	Atlas-SNP
ZNF517	340385	hgsc.bcm.edu	hg19	8	146033090	146033090	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF517	NM_213605	exon5	c.C789T	p.C263C	CGCATGCGGCGAG	.	69.0	29.0	83.0	0.0	.	30	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2047346	2047346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SMARCA2	NM_139045	exon5	c.C908A	p.P303H	CAGTGCCCGGGCC	.	358.0	17.0	367.0	0.0	.	313	.	.	Atlas-SNP
GLIS3	169792	hgsc.bcm.edu	hg19	9	4118184	4118184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GLIS3	NM_001042413	exon4	c.C1294T	p.R432C	CCAGGCGTTCGGT	.	111.0	42.0	114.0	0.0	.	152	.	.	Atlas-SNP
KIAA1432	57589	hgsc.bcm.edu	hg19	9	5772941	5772941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1432	NM_020829	exon25	c.G3844A	p.V1282I	TGCATCGTTATAG	.	88.0	35.0	93.0	0.0	.	97	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13192209	13192209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MPDZ	NM_003829	exon15	c.G1889A	p.C630Y	CGACAGCACACCA	.	110.0	39.0	110.0	0.0	.	324	.	.	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32450103	32450103	+	Silent	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ACO1	NM_002197	exon21	c.C2664G	p.A888A	GATGGCCAAGTAG	.	130.0	60.0	163.0	0.0	.	149	.	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35399263	35399263	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UNC13B	NM_006377	exon33	c.C3933A	p.P1311P	TCTGCCCCCACTC	.	147.0	53.0	138.0	0.0	.	153	.	.	Atlas-SNP
RUSC2	9853	hgsc.bcm.edu	hg19	9	35558293	35558293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RUSC2	NM_014806	exon7	c.G3160A	p.A1054T	CTCAAGGCCTTTG	.	53.0	11.0	64.0	0.0	.	88	.	.	Atlas-SNP
CA9	768	hgsc.bcm.edu	hg19	9	35674060	35674060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CA9	NM_001216	exon1	c.T104G	p.V35G	TGCCTGTCCATCC	.	91.0	32.0	84.0	0.0	.	48	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35705588	35705588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TLN1	NM_006289	exon43	c.C5693T	p.S1898L	GCCTCCGAGGCCA	.	80.0	37.0	80.0	0.0	.	185	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37707440	37707440	+	Silent	SNP	C	C	T	rs139243880		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FRMPD1	NM_014907	exon3	c.C129T	p.P43P	TGGGCCCGCCAGG	.	155.0	68.0	115.0	0.0	.	237	.	C|1.000;T|0.000	Atlas-SNP
SLC25A51	92014	hgsc.bcm.edu	hg19	9	37888305	37888305	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_033412	exon3	c.T243A	p.Y81X	TCCACGATACAAA	.	159.0	52.0	144.0	0.0	.	.	.	.	Atlas-SNP
C9orf135	138255	hgsc.bcm.edu	hg19	9	72435841	72435841	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C9orf135	NM_001010940	exon1	c.C46T	p.Q16X	AGGAAGCAACACT	.	82.0	24.0	84.0	0.0	.	25	.	.	Atlas-SNP
ALDH1A1	216	hgsc.bcm.edu	hg19	9	75567885	75567885	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ALDH1A1	NM_000689	exon1	c.T32A	p.V11D	AGTAGGACAGGTA	.	142.0	51.0	136.0	0.0	.	98	.	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	hg19	9	82333837	82333837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TLE4	NM_007005	exon15	c.A1541T	p.D514V	TCTGGGACATCAG	.	151.0	66.0	122.0	0.0	.	187	.	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84607569	84607569	+	Silent	SNP	T	T	A	rs145735905	bycluster;by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001001670	exon4	c.T2184A	p.I728I	GAGAATTCATGGA	.	342.0	139.0	330.0	0.0	.	.	.	T|0.998;C|0.002	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	hg19	9	86495341	86495341	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIF27	NM_017576	exon11	c.T2514C	p.A838A	CTCATTAGCACGT	.	60.0	27.0	50.0	0.0	.	103	.	.	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90747272	90747272	+	Missense_Mutation	SNP	G	G	A	rs373582239		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001166137	exon4	c.C680T	p.P227L	CCTTTCGGAGGAG	.	106.0	42.0	103.0	0.0	.	.	.	.	Atlas-SNP
NXNL2	158046	hgsc.bcm.edu	hg19	9	91150438	91150438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NXNL2	NM_145283	exon1	c.C89T	p.A30V	TGGTGGCACTGTA	.	122.0	50.0	171.0	0.0	.	13	.	.	Atlas-SNP
S1PR3	1903	hgsc.bcm.edu	hg19	9	91617238	91617238	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	S1PR3	NM_005226	exon2	c.A1123T	p.I375F	AATGGGATCTTCT	.	103.0	40.0	92.0	0.0	.	49	.	.	Atlas-SNP
IARS	3376	hgsc.bcm.edu	hg19	9	95021242	95021242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IARS	NM_013417	exon19	c.A1910G	p.N637S	CGGAGGTTTTCTG	.	78.0	33.0	86.0	0.0	.	74	.	.	Atlas-SNP
ECM2	1842	hgsc.bcm.edu	hg19	9	95263292	95263292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ECM2	NM_001393	exon9	c.G1648A	p.V550I	ACGGGACGTGATA	.	147.0	50.0	159.0	0.0	.	147	.	.	Atlas-SNP
ZNF510	22869	hgsc.bcm.edu	hg19	9	99521523	99521523	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF510	NM_014930	exon6	c.A1589C	p.N530T	CTGAGGTTTGACT	.	91.0	6.0	101.0	0.0	.	59	.	.	Atlas-SNP
ZNF782	158431	hgsc.bcm.edu	hg19	9	99580289	99580289	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF782	NM_001001662	exon6	c.A2016G	p.K672K	ATAGGGTTTCTCC	.	160.0	10.0	166.0	0.0	.	64	.	.	Atlas-SNP
INVS	27130	hgsc.bcm.edu	hg19	9	103054739	103054739	+	Missense_Mutation	SNP	C	C	T	rs370949695		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	INVS,NS,carcinoma,0,1	INVS	NM_014425	exon14	c.C2200T	p.R734W	GATGAGCGGTGTG	.	223.0	91.0	250.0	0.0	.	81	.	.	Atlas-SNP
LPPR1	0	hgsc.bcm.edu	hg19	9	104079724	104079724	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_207299	exon7	c.A891G	p.V297V	TGGAGTACCCCTA	.	155.0	62.0	196.0	0.0	.	.	.	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	hg19	9	104340102	104340102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GRIN3A	NM_133445	exon8	c.T2956A	p.S986T	TAAATGATGTATT	.	45.0	12.0	63.0	0.0	.	186	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114176260	114176260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA0368	NM_001080398	exon21	c.C2528T	p.P843L	ATAACCGGCAAAC	.	91.0	23.0	80.0	0.0	.	144	.	.	Atlas-SNP
SLC46A2	57864	hgsc.bcm.edu	hg19	9	115648748	115648748	+	Silent	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC46A2	NM_033051	exon3	c.T1362A	p.I454I	AATTGGAATGATG	.	164.0	60.0	148.0	0.0	.	30	.	.	Atlas-SNP
ALAD	210	hgsc.bcm.edu	hg19	9	116153902	116153902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ALAD	NM_000031	exon4	c.T166C	p.Y56H	CACCATACCTGTG	.	64.0	28.0	79.0	0.0	.	36	.	.	Atlas-SNP
FBXW2	26190	hgsc.bcm.edu	hg19	9	123533666	123533666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FBXW2	NM_012164	exon7	c.G1036A	p.G346S	AGAGACCAAGTGC	.	98.0	33.0	108.0	0.0	.	34	.	.	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124534910	124534910	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DAB2IP_ENST00000259371,NS,carcinoma,0,2	DAB2IP	NM_032552	exon12	c.G2019A	p.P673P	GTTACCGTCTCCA	.	80.0	27.0	95.0	0.0	.	150	.	.	Atlas-SNP
ANGPTL2	23452	hgsc.bcm.edu	hg19	9	129854031	129854031	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANGPTL2	NM_012098	exon4	c.C1200T	p.Y400Y	GCCATGGTAGCGC	.	99.0	32.0	110.0	0.0	.	46	.	.	Atlas-SNP
GARNL3	84253	hgsc.bcm.edu	hg19	9	130027161	130027161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GARNL3	NM_032293	exon1	c.T5C	p.V2A	AAATGGTAGTTGA	.	113.0	47.0	129.0	0.0	.	83	.	.	Atlas-SNP
CDK9	1025	hgsc.bcm.edu	hg19	9	130551527	130551527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDK9	NM_001261	exon7	c.T824C	p.V275A	GGAAGGTGAAGGA	.	109.0	45.0	93.0	0.0	.	22	.	.	Atlas-SNP
NAIF1	203245	hgsc.bcm.edu	hg19	9	130829075	130829075	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAIF1	NM_197956	exon1	c.C306T	p.D102D	AGCTCCGTCCTCC	.	72.0	29.0	90.0	0.0	.	36	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132637022	132637022	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	USP20	NM_001008563	exon18	c.C1908T	p.H636H	CCACCACGGCACG	.	78.0	33.0	90.0	0.0	.	186	.	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134353960	134353960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PRRC2B_ENST00000357304,rectum,carcinoma,0,2	PRRC2B	NM_013318	exon17	c.G4712A	p.R1571H	AGCAGCGCCGCCT	.	93.0	46.0	114.0	0.0	.	266	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135140223	135140223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	SETX	NM_015046	exon26	c.A7437G	p.I2479M	TGGGGCTATGGTA	.	103.0	50.0	100.0	0.0	.	234	.	.	Atlas-SNP
CACFD1	11094	hgsc.bcm.edu	hg19	9	136330530	136330530	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CACFD1	NM_017586	exon3	c.A281T	p.D94V	AGGTGGACCGGCT	.	69.0	31.0	90.0	0.0	.	1	.	.	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	hg19	9	139231495	139231495	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPSM1	NM_015597	exon4	c.C544T	p.R182X	GATGTCCGAGAGA	.	89.0	29.0	122.0	0.0	.	50	.	.	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	hg19	9	139288750	139288750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SNAPC4	NM_003086	exon6	c.T583C	p.S195P	CCACTGACTTTCG	.	86.0	35.0	86.0	0.0	.	82	.	.	Atlas-SNP
EGFL7	51162	hgsc.bcm.edu	hg19	9	139564144	139564144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EGFL7	NM_016215	exon6	c.C284T	p.T95I	AGAGGACCAGCGG	.	107.0	6.0	113.0	0.0	.	11	.	.	Atlas-SNP
ZMYND19	116225	hgsc.bcm.edu	hg19	9	140477533	140477533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZMYND19	NM_138462	exon5	c.C442T	p.R148W	AATACCGGGTCAC	.	98.0	19.0	107.0	0.0	.	16	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140881287	140881287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CACNA1B	NM_001243812	exon15	c.C1955A	p.A652D	CTGCCGCCATCCT	.	66.0	21.0	82.0	0.0	.	266	.	.	Atlas-SNP
GDI2	2665	hgsc.bcm.edu	hg19	10	5827986	5827986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GDI2	NM_001494	exon5	c.G416A	p.R139H	CTGAAGCGACGTT	.	36.0	13.0	60.0	0.0	.	26	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	hg19	10	7608361	7608361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITIH5	NM_030569	exon13	c.T2159C	p.V720A	CCGTTCACTGTGA	.	35.0	21.0	84.0	0.0	.	343	.	.	Atlas-SNP
RPP38	10557	hgsc.bcm.edu	hg19	10	15145341	15145341	+	Missense_Mutation	SNP	C	C	T	rs138934702		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RPP38	NM_001265601	exon2	c.C28T	p.R10W	CCGGGGCGGGGAT	.	79.0	37.0	130.0	0.0	.	26	.	C|1.000;T|0.000	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15590538	15590538	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITGA8	NM_003638	exon27	c.C2796T	p.I932I	ACAGGAGATTTGT	.	76.0	35.0	90.0	0.0	.	230	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16877086	16877086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CUBN	NM_001081	exon64	c.A10289G	p.N3430S	GTGTGGTTCTGGG	.	111.0	8.0	153.0	0.0	.	515	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21804625	21804625	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	C10orf140_ENST00000449193,colon,carcinoma,0,2	.	NM_207371	exon4	c.C2127T	p.C709C	GCACTCGCACTTT	.	107.0	29.0	109.0	1.0	.	.	.	.	Atlas-SNP
ARMC3	219681	hgsc.bcm.edu	hg19	10	23326257	23326257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARMC3	NM_173081	exon19	c.C2468T	p.A823V	GTAGAGCGTGGAA	.	133.0	52.0	124.0	0.0	.	102	.	.	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29769474	29769474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SVIL	NM_021738	exon29	c.G5369A	p.S1790N	GCCGTGCTCACCA	.	116.0	42.0	117.0	0.0	.	226	.	.	Atlas-SNP
EPC1	80314	hgsc.bcm.edu	hg19	10	32581987	32581987	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	EPC1,colon,carcinoma,0,1	EPC1	NM_025209	exon4	c.C595T	p.R199X	CATCTCGCTTCTC	.	87.0	33.0	92.0	0.0	.	74	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37447483	37447483	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANKRD30A	NM_052997	exon15	c.A1701G	p.L567L	AGCCTTAGAATTG	.	290.0	119.0	268.0	0.0	.	448	.	.	Atlas-SNP
ALOX5	240	hgsc.bcm.edu	hg19	10	45924153	45924153	+	Missense_Mutation	SNP	G	G	A	rs28395872	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ALOX5	NM_000698	exon7	c.G922A	p.A308T	CTGGCCGCTCCCA	.	130.0	43.0	142.0	0.0	.	88	.	G|0.973;T|0.027	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	hg19	10	48388542	48388542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBP3	NM_002900	exon1	c.T2336C	p.V779A	TCGATCACCAGCG	.	110.0	43.0	126.0	0.0	.	152	.	.	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	hg19	10	48414329	48414329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GDF2	NM_016204	exon2	c.A539G	p.D180G	CAGGCATCTGTTC	.	96.0	37.0	80.0	0.0	.	77	.	.	Atlas-SNP
MAPK8	5599	hgsc.bcm.edu	hg19	10	49628362	49628362	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAPK8	NM_139047	exon5	c.C615T	p.N205N	GGAAAACGGTCAG	.	99.0	7.0	108.0	0.0	.	118	.	.	Atlas-SNP
CHAT	1103	hgsc.bcm.edu	hg19	10	50854625	50854625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHAT	NM_020549	exon8	c.G1186A	p.V396M	GGAGGCGTGGAGC	.	161.0	76.0	149.0	0.0	.	162	.	.	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	hg19	10	52587939	52587939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	A1CF	NM_001198820	exon8	c.T745C	p.S249P	AGGTAGACAGCAT	.	63.0	20.0	58.0	0.0	.	190	.	.	Atlas-SNP
CSTF2T	23283	hgsc.bcm.edu	hg19	10	53458564	53458564	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CSTF2T	NM_015235	exon1	c.A746T	p.D249V	GGAATGTCCTTCA	.	65.0	24.0	85.0	0.0	.	64	.	.	Atlas-SNP
SIRT1	23411	hgsc.bcm.edu	hg19	10	69672422	69672422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIRT1	NM_012238	exon8	c.A1549G	p.T517A	CCACGAACACAAA	.	175.0	73.0	182.0	0.0	.	38	.	.	Atlas-SNP
SAR1A	56681	hgsc.bcm.edu	hg19	10	71912317	71912317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SAR1A	NM_020150	exon7	c.G512A	p.R171H	ATGGGGCGAGCAT	.	83.0	38.0	92.0	0.0	.	19	.	.	Atlas-SNP
PSAP	5660	hgsc.bcm.edu	hg19	10	73594212	73594212	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PSAP	NM_001042466	exon2	c.G91C	p.V31L	ACCACACTGCCGA	.	72.0	28.0	99.0	0.0	.	43	.	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	hg19	10	73767711	73767711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHST3	NM_004273	exon3	c.G922A	p.A308T	GTGCTGGCCTCGC	.	195.0	89.0	202.0	0.0	.	36	.	.	Atlas-SNP
ZMIZ1	57178	hgsc.bcm.edu	hg19	10	81065903	81065903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZMIZ1	NM_020338	exon22	c.C2470T	p.P824S	TGGCGGCCGGTGC	.	42.0	14.0	51.0	0.0	.	101	.	.	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88197700	88197700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WAPAL	NM_015045	exon18	c.T3484A	p.F1162I	TCAAAAATTTTTT	.	415.0	133.0	497.0	0.0	.	81	.	.	Atlas-SNP
PANK1	53354	hgsc.bcm.edu	hg19	10	91371568	91371568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PANK1	NM_148977	exon2	c.G941T	p.S314I	GCACAGCTGGGAA	.	128.0	51.0	134.0	0.0	.	35	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91520371	91520371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIF20B	NM_016195	exon28	c.A4649T	p.E1550V	GTTTTGAAATTTC	.	257.0	97.0	307.0	0.0	.	191	.	.	Atlas-SNP
ANKRD1	27063	hgsc.bcm.edu	hg19	10	92675939	92675939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANKRD1	NM_014391	exon6	c.G640A	p.A214T	CTCGGGCGCTAAT	.	76.0	17.0	113.0	0.0	.	50	.	.	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	hg19	10	99131898	99131898	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RRP12	NM_015179	exon20	c.G2275C	p.A759P	CCAAGGCCACGAC	.	77.0	17.0	75.0	0.0	.	97	.	.	Atlas-SNP
PKD2L1	9033	hgsc.bcm.edu	hg19	10	102058491	102058491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PKD2L1	NM_016112	exon4	c.T559C	p.F187L	AGATGAAGGAGTG	.	131.0	35.0	130.0	0.0	.	103	.	.	Atlas-SNP
SEMA4G	57715	hgsc.bcm.edu	hg19	10	102740362	102740362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SEMA4G	NM_001203244	exon11	c.T1379A	p.V460D	CCGTAGTCCTGGG	.	117.0	43.0	108.0	0.0	.	55	.	.	Atlas-SNP
LDB1	8861	hgsc.bcm.edu	hg19	10	103870859	103870859	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LDB1	NM_001113407	exon4	c.T216C	p.F72F	AAGCTCAAATATT	.	67.0	37.0	71.0	0.0	.	61	.	.	Atlas-SNP
LOC729020	0	hgsc.bcm.edu	hg19	10	105005831	105005831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001143909	exon1	c.G78A	p.M26I	CCAGATGCTAGAC	.	157.0	52.0	151.0	0.0	.	.	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105182857	105182857	+	Silent	SNP	C	C	A	rs141472462	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PDCD11	NM_014976	exon18	c.C2610A	p.P870P	AGTGCCCGACCTG	.	133.0	58.0	158.0	0.0	.	160	.	C|1.000;T|0.000	Atlas-SNP
SLK	9748	hgsc.bcm.edu	hg19	10	105762305	105762305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLK	NM_014720	exon9	c.A1369T	p.I457L	ATAATGATAACCT	.	101.0	46.0	107.0	0.0	.	107	.	.	Atlas-SNP
ITPRIP	85450	hgsc.bcm.edu	hg19	10	106075738	106075738	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITPRIP	NM_001272013	exon2	c.G72A	p.P24P	CTCCCGCGGGAAC	.	52.0	17.0	52.0	0.0	.	44	.	.	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	hg19	10	112337617	112337617	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SMC3,NS,carcinoma,0,2	SMC3	NM_005445	exon6	c.C295T	p.R99X	TCACTTCGAAGAG	.	59.0	24.0	88.0	0.0	.	103	.	.	Atlas-SNP
TCF7L2	6934	hgsc.bcm.edu	hg19	10	114901029	114901029	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TCF7L2	NM_001146283	exon6	c.G711A	p.P237P	CACGCCGGGAAAC	.	104.0	32.0	138.0	0.0	.	298	.	.	Atlas-SNP
CCDC172	374355	hgsc.bcm.edu	hg19	10	118116936	118116936	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_198515	exon6	c.C493T	p.Q165X	GAACTTCAAAAAC	.	229.0	10.0	249.0	0.0	.	.	.	.	Atlas-SNP
VAX1	11023	hgsc.bcm.edu	hg19	10	118896110	118896110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VAX1	NM_001112704	exon2	c.A302C	p.K101T	GTCCTCTTAGGCC	.	123.0	59.0	109.0	0.0	.	50	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134628105	134628105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TTC40	NM_001200049	exon53	c.C7261T	p.P2421S	CGTATGGGTCCAC	.	145.0	12.0	180.0	0.0	.	100	.	.	Atlas-SNP
ATHL1	80162	hgsc.bcm.edu	hg19	11	294325	294325	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATHL1	NM_025092	exon13	c.A1867C	p.S623R	AGAGTGAGCGTCT	.	157.0	71.0	101.0	0.0	.	88	.	.	Atlas-SNP
C11orf35	256329	hgsc.bcm.edu	hg19	11	554999	554999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C11orf35	NM_173573	exon14	c.A1886G	p.D629G	CAGGTGTCCGCGG	.	104.0	32.0	100.0	0.0	.	22	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	609548	609548	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PHRF1	NM_020901	exon14	c.G4089A	p.A1363A	TGTGGCGCCTGCG	.	51.0	17.0	53.0	0.0	.	188	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	610607	610607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PHRF1	NM_020901	exon16	c.C4520T	p.P1507L	GCCTGCCGCTAGT	.	111.0	45.0	97.0	0.0	.	188	.	.	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	hg19	11	721123	721123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPS8L2	NM_022772	exon8	c.C617T	p.A206V	GCCCGGCGCCCAT	.	115.0	17.0	103.0	0.0	.	42	.	.	Atlas-SNP
SLC25A22	79751	hgsc.bcm.edu	hg19	11	792953	792953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC25A22	NM_001191061	exon6	c.G329A	p.G110D	CCACAGCCCGCCA	.	98.0	44.0	81.0	0.0	.	19	.	.	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	972110	972110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AP2A2	NM_012305	exon4	c.C328T	p.R110C	CTGATCCGCCTGA	.	66.0	30.0	51.0	0.0	.	50	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1015776	1015776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	MUC6_ENST00000421673,colon,carcinoma,0,2	MUC6	NM_005961	exon31	c.C7025T	p.T2342M	GTGGGCGTAGGTG	.	190.0	73.0	137.0	0.0	.	408	.	.	Atlas-SNP
CDKN1C	1028	hgsc.bcm.edu	hg19	11	2905227	2905227	+	Splice_Site	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDKN1C	NM_001122630	exon4	c.923+2T>C	.	GTACTCACTTGGC	.	154.0	67.0	178.0	0.0	.	4	.	.	Atlas-SNP
RHOG	391	hgsc.bcm.edu	hg19	11	3848965	3848965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RHOG	NM_001665	exon2	c.C404T	p.A135V	ATGGGCGCCTGGC	.	63.0	24.0	98.0	0.0	.	13	.	.	Atlas-SNP
ST5	6764	hgsc.bcm.edu	hg19	11	8751983	8751983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ST5	NM_005418	exon6	c.T854C	p.I285T	TTCTGGATCCGGC	.	42.0	11.0	48.0	0.0	.	85	.	.	Atlas-SNP
DENND5A	23258	hgsc.bcm.edu	hg19	11	9161225	9161225	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DENND5A	NM_015213	exon23	c.A3857C	p.D1286A	CAGATGTCGATGC	.	39.0	13.0	30.0	0.0	.	84	.	.	Atlas-SNP
SPON1	10418	hgsc.bcm.edu	hg19	11	14264943	14264943	+	Splice_Site	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPON1	NM_006108	exon7	c.889+1G>A	.	CAACGTGTAAGTA	.	56.0	25.0	103.0	0.0	.	65	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	20119177	20119177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAV2	NM_001244963	exon33	c.G6244A	p.V2082I	GACAGCGTTCTTG	.	95.0	33.0	126.0	0.0	.	255	.	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	hg19	11	21135203	21135203	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NELL1	NM_006157	exon13	c.T1369C	p.L457L	CCTGGGTTATATC	.	177.0	71.0	148.0	0.0	.	179	.	.	Atlas-SNP
ARL14EP	120534	hgsc.bcm.edu	hg19	11	30354502	30354502	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_152316	exon3	c.A516G	p.K172K	AGAAAAAAGAAGG	.	85.0	37.0	64.0	0.0	.	.	.	.	Atlas-SNP
MPPED2	744	hgsc.bcm.edu	hg19	11	30435807	30435807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MPPED2	NM_001584	exon5	c.C734T	p.P245L	AGCTTGGGCCGGA	.	102.0	44.0	130.0	0.0	.	106	.	.	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45241211	45241211	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PRDM11	NM_001256695	exon6	c.C645T	p.I215I	GGACATCCGGCCT	.	76.0	24.0	90.0	0.0	.	53	.	.	Atlas-SNP
DDB2	1643	hgsc.bcm.edu	hg19	11	47238524	47238524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DDB2	NM_000107	exon3	c.T380C	p.V127A	GCACTGTGGCTGT	.	145.0	11.0	160.0	0.0	.	31	.	.	Atlas-SNP
SPI1	6688	hgsc.bcm.edu	hg19	11	47376855	47376855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPI1	NM_001080547	exon5	c.A739G	p.K247E	GCTTCTTCTTCAC	.	42.0	9.0	32.0	0.0	.	21	.	.	Atlas-SNP
C1QTNF4	114900	hgsc.bcm.edu	hg19	11	47611408	47611408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C1QTNF4	NM_031909	exon2	c.G955A	p.A319T	GCGGGGCGGCGGG	.	173.0	78.0	136.0	0.0	.	19	.	.	Atlas-SNP
OR4C11	219429	hgsc.bcm.edu	hg19	11	55371494	55371494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR4C11	NM_001004700	exon1	c.A356T	p.D119V	TAGCGATCAACAG	.	155.0	64.0	138.0	0.0	.	73	.	.	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	hg19	11	55579121	55579121	+	Missense_Mutation	SNP	A	A	T	rs142577076	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	OR5L1,NS,carcinoma,0,1	OR5L1	NM_001004738	exon1	c.A179T	p.Y60F	CCATGTACTTTTT	.	153.0	62.0	103.0	0.0	.	145	.	A|1.000;G|0.000	Atlas-SNP
OR5D16	390144	hgsc.bcm.edu	hg19	11	55606628	55606628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR5D16	NM_001005496	exon1	c.A401G	p.Y134C	TGCTCTACACAGT	.	84.0	37.0	106.0	0.0	.	94	.	.	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55860942	55860942	+	Silent	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR8I2	NM_001003750	exon1	c.T159G	p.S53S	GGATTCTCAGCTT	.	71.0	36.0	72.0	0.0	.	119	.	.	Atlas-SNP
OR8H3	390152	hgsc.bcm.edu	hg19	11	55890135	55890135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR8H3	NM_001005201	exon1	c.G287A	p.G96D	TCACGGGCTGCTT	.	120.0	7.0	99.0	0.0	.	92	.	.	Atlas-SNP
OR5AR1	219493	hgsc.bcm.edu	hg19	11	56432083	56432083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR5AR1	NM_001004730	exon1	c.A922G	p.K308E	GGAAAAAAATCTC	.	56.0	23.0	56.0	0.0	.	68	.	.	Atlas-SNP
PRG2	5553	hgsc.bcm.edu	hg19	11	57155302	57155302	+	Missense_Mutation	SNP	G	G	A	rs142359007		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PRG2_ENST00000311862,colon,carcinoma,0,1	PRG2	NM_002728	exon5	c.C535T	p.R179C	TCCAGCGGCTGCC	.	161.0	65.0	202.0	0.0	.	65	.	G|1.000;A|0.000	Atlas-SNP
VPS37C	55048	hgsc.bcm.edu	hg19	11	60899319	60899319	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VPS37C	NM_017966	exon5	c.G1041A	p.P347P	CCCCGGCGGTGGT	.	33.0	14.0	23.0	0.0	.	30	.	.	Atlas-SNP
PPP1R32	220004	hgsc.bcm.edu	hg19	11	61249285	61249285	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001170753	exon2	c.A4T	p.M2L	ATCATGATGGGGA	.	58.0	22.0	74.0	0.0	.	.	.	.	Atlas-SNP
FEN1	2237	hgsc.bcm.edu	hg19	11	61563849	61563849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	FEN1,colon,carcinoma,0,1	FEN1	NM_004111	exon2	c.G1016A	p.R339H	AGGGCCGCCTGGA	.	190.0	72.0	227.0	0.0	.	15	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62303477	62303477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AHNAK	NM_001620	exon3	c.G94A	p.V32I	CAAAGACGCCGTC	.	62.0	33.0	45.0	0.0	.	532	.	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62370721	62370721	+	Splice_Site	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EML3	NM_153265	exon21	c.2258-2A>C	.	GTCCCCTGGGGAG	.	25.0	11.0	30.0	0.0	.	61	.	.	Atlas-SNP
CHRM1	1128	hgsc.bcm.edu	hg19	11	62677349	62677349	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHRM1	NM_000738	exon2	c.C1224T	p.Y408Y	GTTGACGTAGCAC	.	128.0	44.0	150.0	0.0	.	29	.	.	Atlas-SNP
MAP4K2	5871	hgsc.bcm.edu	hg19	11	64557055	64557055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAP4K2	NM_004579	exon32	c.C2417T	p.A806V	CTGTGCGCCTCTG	.	114.0	29.0	130.0	0.0	.	83	.	.	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64592001	64592001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CDC42BPG	NM_017525	exon37	c.G4600A	p.V1534I	CTGAGACCTGCAG	.	358.0	138.0	347.0	0.0	.	101	.	.	Atlas-SNP
EHD1	10938	hgsc.bcm.edu	hg19	11	64622239	64622239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EHD1	NM_006795	exon5	c.G1171A	p.A391T	GCCGCGCGATGTC	.	29.0	10.0	32.0	0.0	.	31	.	.	Atlas-SNP
NAALADL1	10004	hgsc.bcm.edu	hg19	11	64813529	64813529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAALADL1	NM_005468	exon16	c.G1913A	p.R638H	GATATGCGTTGGC	.	52.0	20.0	46.0	0.0	.	58	.	.	Atlas-SNP
RELA	5970	hgsc.bcm.edu	hg19	11	65426225	65426225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RELA	NM_021975	exon7	c.G628T	p.D210Y	TCTCATCCCCACC	.	57.0	38.0	78.0	0.0	.	44	.	.	Atlas-SNP
RBM4	5936	hgsc.bcm.edu	hg19	11	66411228	66411228	+	Silent	SNP	C	C	T	rs372104227		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBM4	NM_002896	exon3	c.C720T	p.S240S	TGCCTCCGTGTAT	.	49.0	24.0	50.0	0.0	.	34	.	.	Atlas-SNP
ANKRD13D	338692	hgsc.bcm.edu	hg19	11	67069033	67069033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANKRD13D	NM_207354	exon13	c.C1423T	p.R475C	ATGGAGCGCAACG	.	109.0	42.0	85.0	0.0	.	71	.	.	Atlas-SNP
MRGPRF	116535	hgsc.bcm.edu	hg19	11	68772834	68772834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MRGPRF	NM_001098515	exon3	c.G944A	p.R315Q	CCGTCCCGCAGGG	.	35.0	12.0	47.0	0.0	.	22	.	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	hg19	11	70332826	70332826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SHANK2	NM_133266	exon10	c.C1808T	p.A603V	CTGCTCGCGGAGG	.	73.0	29.0	92.0	0.0	.	340	.	.	Atlas-SNP
DNAJB13	374407	hgsc.bcm.edu	hg19	11	73675956	73675956	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAJB13	NM_153614	exon4	c.T368A	p.L123X	TAGATTTGAACTT	.	97.0	30.0	103.0	0.0	.	28	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73801915	73801915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C2CD3	NM_015531	exon20	c.G3584A	p.R1195Q	ACAGTTCGGGCAG	.	99.0	41.0	94.0	0.0	.	288	.	.	Atlas-SNP
ARRB1	408	hgsc.bcm.edu	hg19	11	74984011	74984011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARRB1	NM_020251	exon12	c.G926A	p.G309D	TTGGCACCTTCCC	.	89.0	37.0	92.0	0.0	.	37	.	.	Atlas-SNP
B3GNT6	192134	hgsc.bcm.edu	hg19	11	76751049	76751049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	B3GNT6	NM_138706	exon2	c.C454T	p.R152C	CCAGTGCGCCGCC	.	35.0	10.0	23.0	0.0	.	27	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76919769	76919769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYO7A	NM_000260	exon44	c.T5972C	p.V1991A	ACCAGGTGTTCTT	.	48.0	23.0	46.0	0.0	.	164	.	.	Atlas-SNP
GAB2	9846	hgsc.bcm.edu	hg19	11	77930356	77930356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GAB2	NM_080491	exon10	c.C1993T	p.R665W	ACTGCCGCACGTC	.	73.0	30.0	80.0	0.0	.	63	.	.	Atlas-SNP
CCDC81	60494	hgsc.bcm.edu	hg19	11	86126223	86126223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCDC81	NM_001156474	exon13	c.A1559G	p.E520G	TGGTGGAAAAGCA	.	216.0	80.0	226.0	0.0	.	89	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93429945	93429945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA1731	NM_033395	exon15	c.A1867G	p.I623V	TCATTGATAACTG	.	122.0	31.0	154.0	0.0	.	173	.	.	Atlas-SNP
GPR83	10888	hgsc.bcm.edu	hg19	11	94113391	94113391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPR83	NM_016540	exon4	c.A1196G	p.N399S	AGGAGGTTATTGG	.	132.0	47.0	154.0	0.0	.	47	.	.	Atlas-SNP
CEP57	9702	hgsc.bcm.edu	hg19	11	95562468	95562468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CEP57	NM_014679	exon10	c.A1245G	p.I415M	CCAAATAACTAAA	.	157.0	8.0	131.0	0.0	.	40	.	.	Atlas-SNP
MTMR2	8898	hgsc.bcm.edu	hg19	11	95580973	95580973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MTMR2	NM_016156	exon10	c.T1084A	p.S362T	GTAATGATTCTCT	.	138.0	41.0	157.0	0.0	.	79	.	.	Atlas-SNP
MMP20	9313	hgsc.bcm.edu	hg19	11	102482511	102482511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MMP20	NM_004771	exon3	c.T498A	p.D166E	CATAATATCCGCT	.	38.0	18.0	54.0	0.0	.	52	.	.	Atlas-SNP
POU2AF1	5450	hgsc.bcm.edu	hg19	11	111225251	111225251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	POU2AF1	NM_006235	exon5	c.A506G	p.E169G	TGGTGCTCTGGGC	.	126.0	50.0	113.0	0.0	.	23	.	.	Atlas-SNP
ZW10	9183	hgsc.bcm.edu	hg19	11	113609090	113609090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZW10	NM_004724	exon13	c.C1780T	p.R594W	GTGCCCGCATTTG	.	73.0	33.0	82.0	0.0	.	49	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118377321	118377321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MLL	NM_001197104	exon27	c.A10714G	p.I3572V	GCACACATTCCAG	.	183.0	81.0	151.0	0.0	.	548	.	.	Atlas-SNP
BCL9L	283149	hgsc.bcm.edu	hg19	11	118779169	118779169	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BCL9L	NM_182557	exon2	c.C222T	p.G74G	CCCCACGCCCTTC	.	100.0	38.0	117.0	0.0	.	254	.	.	Atlas-SNP
CBL	867	hgsc.bcm.edu	hg19	11	119169140	119169140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CBL	NM_005188	exon15	c.A2324T	p.D775V	GGTATGATGTCCC	.	156.0	71.0	130.0	0.0	.	408	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	121039544	121039544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TECTA	NM_005422	exon19	c.C5909T	p.A1970V	CTGACGCCACACA	.	156.0	21.0	184.0	0.0	.	329	.	.	Atlas-SNP
OR8B4	283162	hgsc.bcm.edu	hg19	11	124294491	124294491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR8B4	NM_001005196	exon1	c.T277C	p.Y93H	CCACATAAGAGAT	.	135.0	55.0	139.0	0.0	.	60	.	.	Atlas-SNP
SIAE	54414	hgsc.bcm.edu	hg19	11	124509754	124509754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIAE	NM_170601	exon8	c.G976A	p.D326N	ACAAATCTGAAGA	.	60.0	20.0	56.0	0.0	.	37	.	.	Atlas-SNP
HEPACAM	220296	hgsc.bcm.edu	hg19	11	124791252	124791252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HEPACAM	NM_152722	exon7	c.G1033A	p.A345T	GCACGGCGGGAGA	.	261.0	100.0	307.0	0.0	.	64	.	.	Atlas-SNP
CHEK1	1111	hgsc.bcm.edu	hg19	11	125514027	125514027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CHEK1,colon,carcinoma,0,1	CHEK1	NM_001244846	exon10	c.G965A	p.R322H	AACCCCGCACAGG	.	152.0	65.0	188.0	0.0	.	44	.	.	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128936699	128936699	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGAP32	NM_001142685	exon6	c.T554G	p.L185R	ATACACAGATGAA	.	95.0	42.0	90.0	0.0	.	307	.	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	hg19	11	129734929	129734929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NFRKB	NM_006165	exon24	c.A3781G	p.N1261D	GCTTATTGCCAGC	.	126.0	56.0	136.0	0.0	.	101	.	.	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130784447	130784447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SNX19	NM_014758	exon1	c.C1388T	p.A463V	ACAGAGGCGGTAA	.	85.0	30.0	88.0	0.0	.	84	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133814238	133814238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IGSF9B	NM_014987	exon3	c.G286A	p.A96T	GAGATGCCTTATC	.	60.0	22.0	100.0	0.0	.	290	.	.	Atlas-SNP
TEAD4	7004	hgsc.bcm.edu	hg19	12	3131073	3131073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	TEAD4,NS,carcinoma,0,1	TEAD4	NM_003213	exon10	c.G787A	p.E263K	TACCTCGAAGCCG	.	143.0	65.0	157.0	0.0	.	45	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6128578	6128578	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VWF	NM_000552	exon28	c.C4006T	p.R1336X	ACGGTCGCTTCCG	.	86.0	32.0	104.0	0.0	.	338	.	.	Atlas-SNP
TAPBPL	55080	hgsc.bcm.edu	hg19	12	6562348	6562348	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TAPBPL	NM_018009	exon2	c.C180A	p.A60A	AAGGGCCTCCCTT	.	123.0	43.0	146.0	0.0	.	21	.	.	Atlas-SNP
IFFO1	25900	hgsc.bcm.edu	hg19	12	6657862	6657862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IFFO1	NM_001193457	exon6	c.G1234A	p.E412K	TCTCCTCGTTGAT	.	120.0	38.0	119.0	0.0	.	55	.	.	Atlas-SNP
PTPN6	5777	hgsc.bcm.edu	hg19	12	7069305	7069305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTPN6	NM_080548	exon13	c.G1490A	p.R497H	CGCAGCGCTCGGG	.	78.0	11.0	99.0	0.0	.	42	.	.	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12300444	12300444	+	Missense_Mutation	SNP	G	G	A	rs143966208		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	LRP6,NS,carcinoma,0,1	LRP6	NM_002336	exon15	c.C3253T	p.R1085W	CAGCCCGTTCAAT	.	177.0	61.0	177.0	1.0	.	170	.	G|1.000;A|0.000	Atlas-SNP
DUSP16	80824	hgsc.bcm.edu	hg19	12	12633224	12633224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DUSP16	NM_030640	exon6	c.C748T	p.R250C	CGGAGCGGGAGAT	.	104.0	37.0	109.0	0.0	.	64	.	.	Atlas-SNP
RERG	85004	hgsc.bcm.edu	hg19	12	15262428	15262428	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RERG	NM_032918	exon5	c.G216A	p.G72G	CATGTGCCCCTCC	.	140.0	56.0	173.0	0.0	.	30	.	.	Atlas-SNP
SLCO1B3	28234	hgsc.bcm.edu	hg19	12	20968682	20968682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLCO1B3	NM_019844	exon3	c.C10A	p.H4N	GACCAACATCAAC	.	56.0	30.0	75.0	0.0	.	151	.	.	Atlas-SNP
CAPRIN2	65981	hgsc.bcm.edu	hg19	12	30863317	30863317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CAPRIN2	NM_001002259	exon18	c.G2903A	p.R968H	ATGCTACGGGAGT	.	105.0	43.0	89.0	0.0	.	109	.	.	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	hg19	12	32793225	32793225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FGD4	NM_139241	exon17	c.G2059A	p.A687T	GCCCAGGCCACCA	.	111.0	41.0	136.0	0.0	.	86	.	.	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40441899	40441899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC2A13	NM_052885	exon2	c.A670C	p.S224R	CAACACTTGCAAA	.	86.0	43.0	129.0	0.0	.	91	.	.	Atlas-SNP
IRAK4	51135	hgsc.bcm.edu	hg19	12	44161948	44161948	+	Missense_Mutation	SNP	C	C	T	rs377584435		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	IRAK4_ENST00000448290,caecum,carcinoma,0,5	IRAK4	NM_016123	exon2	c.C34T	p.R12C	TATGTGCGCTGCC	.	219.0	38.0	213.0	0.0	.	77	.	.	Atlas-SNP
ANO6	196527	hgsc.bcm.edu	hg19	12	45725118	45725118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANO6	NM_001204803	exon4	c.A254T	p.D85V	TTAATGATGGCCA	.	527.0	218.0	565.0	0.0	.	163	.	.	Atlas-SNP
SLC38A2	54407	hgsc.bcm.edu	hg19	12	46760702	46760702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC38A2	NM_018976	exon7	c.A508G	p.K170E	CATATTTCACTAT	.	85.0	34.0	72.0	0.0	.	36	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49427950	49427950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	MLL2_ENST00000301067,NS,carcinoma,0,4	MLL2	NM_003482	exon38	c.G10640A	p.R3547H	GCAGTGCGCTGCT	.	47.0	24.0	63.0	0.0	.	1173	.	.	Atlas-SNP
AQP6	363	hgsc.bcm.edu	hg19	12	50367033	50367033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AQP6	NM_001652	exon1	c.C77T	p.A26V	GCAGGGCGCTGTT	.	51.0	13.0	91.0	0.0	.	25	.	.	Atlas-SNP
AQP6	363	hgsc.bcm.edu	hg19	12	50368266	50368266	+	Splice_Site	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AQP6	NM_001652	exon2	c.561+1G>T	.	ATTGGGGTAAGGA	.	46.0	24.0	46.0	0.0	.	25	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50537820	50537820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_147190	exon2	c.C218T	p.A73V	CAGAGTGCACAGG	.	76.0	11.0	60.0	0.0	.	.	.	.	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51512404	51512404	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TFCP2	NM_001173452	exon2	c.G274T	p.G92X	TCTAACCTTGATT	.	89.0	16.0	100.0	0.0	.	49	.	.	Atlas-SNP
SMAGP	57228	hgsc.bcm.edu	hg19	12	51663059	51663059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SMAGP	NM_001031628	exon2	c.A4G	p.T2A	GGCTGGTCATTGT	.	96.0	35.0	104.0	0.0	.	7	.	.	Atlas-SNP
NR4A1	3164	hgsc.bcm.edu	hg19	12	52448156	52448156	+	Missense_Mutation	SNP	C	C	T	rs375396767		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NR4A1	NM_001202233	exon3	c.C83T	p.P28L	CGAGTCCGGGACC	.	72.0	12.0	61.0	0.0	.	77	.	.	Atlas-SNP
KRT82	3888	hgsc.bcm.edu	hg19	12	52799999	52799999	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KRT82	NM_033033	exon1	c.G63A	p.S21S	GACAGCCGAGTAT	.	73.0	5.0	53.0	0.0	.	45	.	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	hg19	12	53041638	53041638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KRT2	NM_000423	exon6	c.A1124G	p.Y375C	TCCTCATACTGAT	.	70.0	31.0	62.0	0.0	.	94	.	.	Atlas-SNP
SMARCC2	6601	hgsc.bcm.edu	hg19	12	56575357	56575357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SMARCC2	NM_139067	exon10	c.C865T	p.R289W	TGTCCCGTCGATC	.	119.0	46.0	156.0	0.0	.	212	.	.	Atlas-SNP
IL23A	51561	hgsc.bcm.edu	hg19	12	56733288	56733288	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	IL23A,NS,carcinoma,0,1	IL23A	NM_016584	exon2	c.G241T	p.G81X	CCCCAAGGACTCA	.	103.0	29.0	119.0	1.0	.	12	.	.	Atlas-SNP
APOF	319	hgsc.bcm.edu	hg19	12	56755672	56755672	+	Silent	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	APOF	NM_001638	exon2	c.T318G	p.A106A	CTGTAGAGCCCAA	.	133.0	9.0	149.0	0.0	.	13	.	.	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56814391	56814391	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TIMELESS	NM_003920	exon26	c.T3190C	p.L1064L	TGCGCAACAGCTG	.	107.0	46.0	112.0	0.0	.	107	.	.	Atlas-SNP
DTX3	196403	hgsc.bcm.edu	hg19	12	58001004	58001004	+	Missense_Mutation	SNP	G	G	A	rs373278710		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DTX3	NM_178502	exon5	c.G358A	p.A120T	CACCGCGCAGGCC	.	67.0	24.0	95.0	0.0	.	27	.	.	Atlas-SNP
USP15	9958	hgsc.bcm.edu	hg19	12	62785110	62785110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	USP15	NM_001252078	exon16	c.T2134C	p.F712L	CGATTGTTTACAT	.	279.0	105.0	269.0	0.0	.	105	.	.	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62938760	62938760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MON2	NM_015026	exon21	c.A2549G	p.N850S	CATTTAACCATGA	.	392.0	155.0	406.0	0.0	.	160	.	.	Atlas-SNP
SLC35E3	55508	hgsc.bcm.edu	hg19	12	69145879	69145879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC35E3	NM_018656	exon3	c.T581C	p.M194T	CTCCGATGTCATC	.	100.0	42.0	123.0	0.0	.	23	.	.	Atlas-SNP
RAB3IP	117177	hgsc.bcm.edu	hg19	12	70188991	70188991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RAB3IP	NM_175623	exon6	c.C803T	p.T268M	CACCTACGCAGGA	.	221.0	74.0	246.0	0.0	.	48	.	.	Atlas-SNP
KCNMB4	27345	hgsc.bcm.edu	hg19	12	70824288	70824288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	KCNMB4,caecum,carcinoma,0,3	KCNMB4	NM_014505	exon3	c.G488A	p.R163H	TGCATCGCACTCA	.	52.0	21.0	68.0	0.0	.	27	.	.	Atlas-SNP
BBS10	79738	hgsc.bcm.edu	hg19	12	76740856	76740856	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BBS10	NM_024685	exon2	c.T909C	p.S303S	ATTCTGACTATGT	.	64.0	24.0	75.0	0.0	.	46	.	.	Atlas-SNP
E2F7	144455	hgsc.bcm.edu	hg19	12	77417817	77417817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	E2F7	NM_203394	exon13	c.T2714A	p.I905N	CTGGGGATTTCTA	.	69.0	32.0	84.0	0.0	.	201	.	.	Atlas-SNP
MGAT4C	25834	hgsc.bcm.edu	hg19	12	86377408	86377408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MGAT4C	NM_013244	exon6	c.A188G	p.Q63R	TTCAGTTGATGTG	.	91.0	4.0	106.0	0.0	.	110	.	.	Atlas-SNP
TMTC3	160418	hgsc.bcm.edu	hg19	12	88582677	88582677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMTC3	NM_181783	exon11	c.A1490G	p.K497R	GAACCAAAGAAGC	.	433.0	101.0	462.0	0.0	.	75	.	.	Atlas-SNP
LUM	4060	hgsc.bcm.edu	hg19	12	91497984	91497984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LUM	NM_002345	exon3	c.G975T	p.M325I	TTCATACATATCC	.	125.0	56.0	91.0	0.0	.	65	.	.	Atlas-SNP
ELK3	2004	hgsc.bcm.edu	hg19	12	96617510	96617510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ELK3	NM_005230	exon2	c.T166C	p.Y56H	ATGAACTATGATA	.	106.0	47.0	106.0	0.0	.	36	.	.	Atlas-SNP
SCYL2	55681	hgsc.bcm.edu	hg19	12	100708368	100708368	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SCYL2	NM_017988	exon8	c.A1071G	p.P357P	ACTGCCAAAGGTT	.	486.0	195.0	578.0	0.0	.	99	.	.	Atlas-SNP
PMCH	5367	hgsc.bcm.edu	hg19	12	102591388	102591388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PMCH	NM_002674	exon1	c.C161T	p.A54V	TTTTCTGCAGTGT	.	82.0	15.0	90.0	0.0	.	10	.	.	Atlas-SNP
HCFC2	29915	hgsc.bcm.edu	hg19	12	104476618	104476618	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HCFC2	NM_013320	exon7	c.T1002C	p.D334D	AAGAGATGGCTAC	.	129.0	53.0	132.0	0.0	.	94	.	.	Atlas-SNP
CMKLR1	1240	hgsc.bcm.edu	hg19	12	108685651	108685651	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CMKLR1	NM_001142344	exon3	c.T1089C	p.T363T	CATAGAAGTCCTC	.	116.0	49.0	137.0	0.0	.	67	.	.	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	hg19	12	114397139	114397139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBM19	NM_001146699	exon5	c.C449T	p.A150V	TCATTCGCCCAAG	.	84.0	32.0	80.0	0.0	.	117	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116420407	116420407	+	Missense_Mutation	SNP	C	C	T	rs151181388		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MED13L	NM_015335	exon22	c.G4957A	p.V1653I	CTGTAACACTGGA	.	124.0	46.0	118.0	0.0	.	193	.	C|1.000;T|0.000	Atlas-SNP
SUDS3	64426	hgsc.bcm.edu	hg19	12	118848915	118848915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SUDS3	NM_022491	exon11	c.G841A	p.D281N	TCAAAGGACAACC	.	71.0	21.0	63.0	0.0	.	26	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120151400	120151400	+	Missense_Mutation	SNP	C	C	T	rs370080702		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CIT_ENST00000392521,colon,carcinoma,+1,1	CIT	NM_001206999	exon34	c.G4360A	p.G1454S	GCAAGCCGCAGGT	.	95.0	35.0	96.0	0.0	.	535	.	.	Atlas-SNP
UNC119B	84747	hgsc.bcm.edu	hg19	12	121157763	121157763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UNC119B	NM_001080533	exon5	c.C684A	p.D228E	CTCTGACAGCTTC	.	91.0	40.0	77.0	0.0	.	21	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122247883	122247883	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SETD1B	NM_015048	exon5	c.C1032T	p.A344A	CACAGCCGCTTTC	.	78.0	38.0	79.0	0.0	.	105	.	.	Atlas-SNP
DIABLO	56616	hgsc.bcm.edu	hg19	12	122693101	122693101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DIABLO	NM_019887	exon7	c.G547A	p.A183T	TCCTGGCGGTTAT	.	46.0	22.0	42.0	0.0	.	16	.	.	Atlas-SNP
GALNT9	50614	hgsc.bcm.edu	hg19	12	132905784	132905784	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GALNT9	NM_001122636	exon1	c.G6A	p.A2A	GGCCACCGCCATG	.	89.0	38.0	114.0	0.0	.	74	.	.	Atlas-SNP
FBRSL1	57666	hgsc.bcm.edu	hg19	12	133151138	133151138	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FBRSL1	NM_001142641	exon12	c.G1818A	p.Q606Q	TCACCAGCAGAAG	.	65.0	24.0	85.0	0.0	.	47	.	.	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	hg19	13	24413824	24413824	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MIPEP	NM_005932	exon12	c.C1302T	p.Y434Y	ATCACAGTAAATG	.	56.0	38.0	91.0	0.0	.	53	.	.	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	hg19	13	24413861	24413861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MIPEP	NM_005932	exon12	c.T1265C	p.V422A	TGAACAACAGCCT	.	41.0	25.0	63.0	0.0	.	53	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24858385	24858385	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPATA13	NM_001166271	exon5	c.C2277T	p.G759G	GCCCGGCGGGGAG	.	33.0	5.0	75.0	0.0	.	92	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35615180	35615180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NBEA	NM_015678	exon2	c.A405T	p.E135D	AGCAGAAATATGG	.	54.0	45.0	123.0	0.0	.	340	.	.	Atlas-SNP
ENOX1	55068	hgsc.bcm.edu	hg19	13	43843689	43843689	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ENOX1	NM_017993	exon13	c.T1471G	p.L491V	TGTTTAACTCCTC	.	32.0	26.0	72.0	0.0	.	158	.	.	Atlas-SNP
PCDH9	5101	hgsc.bcm.edu	hg19	13	67799558	67799558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDH9	NM_203487	exon2	c.G3015T	p.K1005N	GGGGCCCTTTGTC	.	177.0	82.0	157.0	0.0	.	252	.	.	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	hg19	13	96239850	96239850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DZIP1	NM_198968	exon20	c.G2161A	p.A721T	CGTCCGCGTCACT	.	107.0	43.0	102.0	0.0	.	195	.	.	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	hg19	13	96274617	96274617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DZIP1	NM_014934	exon9	c.A1090G	p.M364V	GCTGCATGACATT	.	86.0	18.0	66.0	0.0	.	195	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103384583	103384583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001146197	exon4	c.C18464T	p.P6155L	GTGTGAGGTGAAC	.	144.0	63.0	190.0	0.0	.	.	.	.	Atlas-SNP
MCF2L	23263	hgsc.bcm.edu	hg19	13	113718636	113718636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MCF2L	NM_001112732	exon6	c.G508A	p.V170I	AGCTCCGTACCAG	.	62.0	16.0	78.0	0.0	.	182	.	.	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	hg19	13	114784388	114784388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RASA3	NM_007368	exon10	c.C793A	p.L265I	GCTGGAGGAAGTA	.	102.0	49.0	117.0	0.0	.	83	.	.	Atlas-SNP
TTC5	91875	hgsc.bcm.edu	hg19	14	20757848	20757848	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TTC5	NM_138376	exon10	c.A1261T	p.K421X	GAGGCTTCCCATT	.	78.0	28.0	89.0	0.0	.	34	.	.	Atlas-SNP
RNASE7	84659	hgsc.bcm.edu	hg19	14	21511475	21511475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RNASE7	NM_032572	exon2	c.G324A	p.M108I	GACCATGTGTAAG	.	92.0	42.0	103.0	0.0	.	18	.	.	Atlas-SNP
ZNF219	51222	hgsc.bcm.edu	hg19	14	21560611	21560611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF219	NM_001102454	exon3	c.G845T	p.S282I	GTAAAGCTCTGGC	.	87.0	34.0	99.0	0.0	.	28	.	.	Atlas-SNP
OR4E2	26686	hgsc.bcm.edu	hg19	14	22133945	22133945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR4E2	NM_001001912	exon1	c.T649A	p.S217T	GTCACCTCCTATA	.	187.0	9.0	153.0	0.0	.	44	.	.	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	hg19	14	23315224	23315224	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MMP14	NM_004995	exon10	c.G1725A	p.Q575Q	CTGCCAGCGTTCC	.	54.0	14.0	64.0	0.0	.	40	.	.	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23652042	23652042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC7A8	NM_012244	exon1	c.G82C	p.G28R	CGGAACCAGCCTC	.	70.0	24.0	75.0	0.0	.	54	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23863388	23863388	+	Silent	SNP	G	G	A	rs148596692		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	MYH6,NS,adenoma,0,1	MYH6	NM_002471	exon21	c.C2574T	p.F858F	GCGCCCGAACTCT	.	101.0	51.0	111.0	0.0	.	274	.	G|1.000;A|0.000	Atlas-SNP
CPNE6	9362	hgsc.bcm.edu	hg19	14	24542179	24542179	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CPNE6	NM_006032	exon2	c.C34G	p.P12A	CCTGAGCCCCCAA	.	63.0	23.0	51.0	0.0	.	40	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24806911	24806911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RIPK3	NM_006871	exon7	c.C890T	p.A297V	GAGACAGCAGCAT	.	109.0	37.0	130.0	0.0	.	43	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24877520	24877520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NYNRIN	NM_025081	exon3	c.A644G	p.H215R	ACTCCCACTCCGA	.	38.0	17.0	23.0	0.0	.	120	.	.	Atlas-SNP
DTD2	112487	hgsc.bcm.edu	hg19	14	31926576	31926576	+	Silent	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_080664	exon1	c.T24G	p.P8P	GGCCTGAGGAATC	.	220.0	88.0	223.0	0.0	.	.	.	.	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	hg19	14	45579384	45579384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PRPF39	NM_017922	exon9	c.A1264G	p.M422V	AAACCCATGGTGC	.	180.0	66.0	205.0	0.0	.	46	.	.	Atlas-SNP
SOS2	6655	hgsc.bcm.edu	hg19	14	50597348	50597348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SOS2	NM_006939	exon20	c.C3208T	p.R1070W	CAATCCGACTAAA	.	213.0	90.0	206.0	0.0	.	195	.	.	Atlas-SNP
PTGER2	5732	hgsc.bcm.edu	hg19	14	52781730	52781730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTGER2	NM_000956	exon1	c.C464A	p.A155D	GCCTGGCCGTGCT	.	54.0	26.0	61.0	0.0	.	27	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56094630	56094630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KTN1	NM_004986	exon6	c.T964A	p.S322T	TTGCAGTCAAGTA	.	144.0	56.0	142.0	0.0	.	147	.	.	Atlas-SNP
TMEM260	0	hgsc.bcm.edu	hg19	14	57051736	57051736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_017799	exon2	c.G178A	p.A60T	ACAGCCGCACATG	.	90.0	34.0	115.0	0.0	.	.	.	.	Atlas-SNP
AP5M1	55745	hgsc.bcm.edu	hg19	14	57747061	57747061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_018229	exon3	c.A869G	p.D290G	TGGATGACTCTGC	.	121.0	60.0	144.0	0.0	.	.	.	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	hg19	14	59113492	59113492	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DACT1,NS,carcinoma,0,1	DACT1	NM_016651	exon4	c.C2151T	p.Y717Y	CCCCTACGCCTAC	.	74.0	24.0	94.0	0.0	.	119	.	.	Atlas-SNP
L3HYPDH	112849	hgsc.bcm.edu	hg19	14	59950530	59950530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_144581	exon1	c.A505G	p.T169A	TACCTGTGGCCAG	.	31.0	16.0	40.0	0.0	.	.	.	.	Atlas-SNP
MTHFD1	4522	hgsc.bcm.edu	hg19	14	64921459	64921459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MTHFD1	NM_005956	exon26	c.A2584C	p.I862L	CTCCCCATCTGCA	.	106.0	26.0	101.0	0.0	.	61	.	.	Atlas-SNP
PLEK2	26499	hgsc.bcm.edu	hg19	14	67864501	67864501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PLEK2	NM_016445	exon2	c.C85T	p.R29W	TCTGCCGAAGGAT	.	108.0	47.0	118.0	0.0	.	23	.	.	Atlas-SNP
MAP3K9	4293	hgsc.bcm.edu	hg19	14	71199865	71199865	+	Missense_Mutation	SNP	G	G	A	rs145221753		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAP3K9	NM_033141	exon12	c.C2263T	p.R755W	CGCCCCGCTTGAG	.	84.0	15.0	92.0	0.0	.	109	.	G|1.000;A|0.000	Atlas-SNP
ACOT4	122970	hgsc.bcm.edu	hg19	14	74062092	74062092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ACOT4	NM_152331	exon3	c.T1000C	p.Y334H	GAGTTGTATGCCC	.	126.0	35.0	135.0	0.0	.	25	.	.	Atlas-SNP
SYNDIG1L	646658	hgsc.bcm.edu	hg19	14	74876101	74876101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SYNDIG1L	NM_001105579	exon2	c.C347T	p.T116I	TGGATGGTGACAT	.	61.0	21.0	53.0	0.0	.	24	.	.	Atlas-SNP
KIAA0317	9870	hgsc.bcm.edu	hg19	14	75130470	75130470	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA0317	NM_001039479	exon20	c.C2425T	p.L809L	GCTGCAGCATCCT	.	87.0	41.0	95.0	0.0	.	68	.	.	Atlas-SNP
EIF2B2	8892	hgsc.bcm.edu	hg19	14	75471454	75471454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EIF2B2	NM_014239	exon4	c.A448G	p.N150D	ATGGAGAACATTG	.	43.0	17.0	63.0	0.0	.	22	.	.	Atlas-SNP
KIAA1737	85457	hgsc.bcm.edu	hg19	14	77580248	77580248	+	Missense_Mutation	SNP	G	G	A	rs201665496	by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	KIAA1737,NS,carcinoma,0,1	KIAA1737	NM_033426	exon4	c.G787A	p.A263T	TCCCCCGCCAGTC	.	81.0	32.0	73.0	0.0	.	26	.	G|1.000;C|0.000	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86088965	86088965	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FLRT2	NM_013231	exon2	c.C1107A	p.L369L	GCCTCTCTTCACC	.	71.0	26.0	69.0	0.0	.	168	.	.	Atlas-SNP
TTC7B	145567	hgsc.bcm.edu	hg19	14	91155976	91155976	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TTC7B	NM_001010854	exon7	c.G858A	p.P286P	CTGGCACGGTGGA	.	131.0	65.0	114.0	0.0	.	93	.	.	Atlas-SNP
CHGA	1113	hgsc.bcm.edu	hg19	14	93397934	93397934	+	Missense_Mutation	SNP	A	A	C	rs71430778	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHGA	NM_001275	exon6	c.A695C	p.E232A	AGGAGGAGGAGGA	.	169.0	69.0	174.0	0.0	.	32	.	A|0.500;T|0.500	Atlas-SNP
BDKRB1	623	hgsc.bcm.edu	hg19	14	96730967	96730967	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BDKRB1	NM_000710	exon3	c.C948T	p.G316G	TGTGGGCCGGCTC	.	108.0	44.0	111.0	0.0	.	41	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96781801	96781801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATG2B	NM_018036	exon22	c.G3481A	p.D1161N	CTCCATCTGAAGA	.	377.0	26.0	366.0	0.0	.	169	.	.	Atlas-SNP
C14orf177	283598	hgsc.bcm.edu	hg19	14	99183450	99183450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C14orf177	NM_182560	exon4	c.T217C	p.F73L	ACCTGTTTCTGTA	.	81.0	29.0	92.0	0.0	.	37	.	.	Atlas-SNP
SETD3	84193	hgsc.bcm.edu	hg19	14	99929899	99929899	+	Silent	SNP	C	C	T	rs146095518		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SETD3	NM_032233	exon3	c.G120A	p.A40A	GCCAGGCGCCGGA	.	36.0	14.0	46.0	0.0	.	56	.	C|1.000;T|0.000	Atlas-SNP
WDR20	91833	hgsc.bcm.edu	hg19	14	102675272	102675272	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WDR20	NM_001242417	exon4	c.C858T	p.H286H	GCTGCACGGTACG	.	113.0	7.0	107.0	0.0	.	35	.	.	Atlas-SNP
INF2	64423	hgsc.bcm.edu	hg19	14	105168020	105168020	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	INF2	NM_022489	exon2	c.C318T	p.R106R	CGTGCGCGCCGTC	.	54.0	13.0	66.0	0.0	.	148	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414171	105414171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AHNAK2	NM_138420	exon7	c.C7617A	p.D2539E	CTCCAGGTCAGCG	.	170.0	11.0	217.0	0.0	.	719	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414174	105414174	+	Silent	SNP	A	A	G	rs374363751	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AHNAK2	NM_138420	exon7	c.T7614C	p.A2538A	CAGGTCAGCGGAA	.	165.0	11.0	227.0	0.0	.	719	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414177	105414177	+	Silent	SNP	G	G	A	rs368398841		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AHNAK2	NM_138420	exon7	c.C7611T	p.S2537S	GTCAGCGGAAGGG	.	173.0	11.0	225.0	0.0	.	719	.	.	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	hg19	15	23003033	23003033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CYFIP1	NM_014608	exon31	c.G3755A	p.S1252N	TCGCCAGCAGCTG	.	95.0	41.0	120.0	0.0	.	159	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921255	24921255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_018958	exon1	c.C241T	p.P81S	GCCGCCCCTCTGG	.	97.0	42.0	109.0	0.0	.	.	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29406202	29406202	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	APBA2	NM_005503	exon13	c.T2161A	p.S721T	GCTCTGTCCAACT	.	87.0	37.0	94.0	0.0	.	132	.	.	Atlas-SNP
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32908462	32908462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGAP11A	NM_199357	exon1	c.C50T	p.A17V	TGCGGGCCTTCTA	.	202.0	76.0	192.0	0.0	.	84	.	.	Atlas-SNP
GJD2	57369	hgsc.bcm.edu	hg19	15	35044813	35044813	+	Missense_Mutation	SNP	G	G	A	rs113904860		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	GJD2,NS,carcinoma,+1,1	GJD2	NM_020660	exon2	c.C832T	p.R278C	TCTTGCGCCATCC	.	152.0	61.0	164.0	0.0	.	49	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39874935	39874935	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	THBS1	NM_003246	exon3	c.C609T	p.G203G	GGGGGGCGTCAAT	.	33.0	13.0	35.0	0.0	.	106	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39881519	39881519	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	THBS1	NM_003246	exon12	c.C1890T	p.F630F	GCCCTTCGGCCAG	.	91.0	34.0	92.0	0.0	.	106	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39885371	39885371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	THBS1	NM_003246	exon18	c.C2938T	p.R980C	GTTGTACGCCATC	.	89.0	39.0	102.0	0.0	.	106	.	.	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	hg19	15	40660890	40660890	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DISP2	NM_033510	exon8	c.C2577T	p.C859C	CTGCTGCGGCCAC	.	75.0	27.0	85.0	0.0	.	86	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41804450	41804450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LTK	NM_001135685	exon4	c.G373A	p.G125R	CGGCTCCGTAGGC	.	243.0	90.0	223.0	0.0	.	117	.	.	Atlas-SNP
TGM5	9333	hgsc.bcm.edu	hg19	15	43545733	43545733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TGM5	NM_201631	exon5	c.G655A	p.V219I	CGTAGACGGGGCT	.	46.0	15.0	50.0	0.0	.	88	.	.	Atlas-SNP
TUBGCP4	27229	hgsc.bcm.edu	hg19	15	43668752	43668752	+	Missense_Mutation	SNP	C	C	T	rs200951264	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TUBGCP4	NM_014444	exon3	c.C259T	p.R87W	TACCTGCGGGCCT	.	118.0	42.0	140.0	0.0	.	48	.	C|0.999;A|0.001	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43820753	43820753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAP1A	NM_002373	exon4	c.G7082A	p.G2361D	CCAATGGCCCAAC	.	69.0	28.0	73.0	0.0	.	189	.	.	Atlas-SNP
DUOXA1	90527	hgsc.bcm.edu	hg19	15	45413420	45413420	+	Splice_Site	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DUOXA1	NM_001276264	exon7	c.206-1G>A	.	TCACAGCTGTGGT	.	131.0	24.0	148.0	0.0	.	32	.	.	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45695622	45695622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPATA5L1	NM_024063	exon1	c.C995A	p.A332D	ACGGCGCCAGTGG	.	127.0	63.0	121.0	0.0	.	40	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49030737	49030737	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CEP152	NM_001194998	exon27	c.C4842T	p.S1614S	ATAACCGGATGGT	.	122.0	38.0	102.0	0.0	.	145	.	.	Atlas-SNP
GALK2	2585	hgsc.bcm.edu	hg19	15	49584596	49584596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GALK2	NM_002044	exon8	c.A829T	p.I277F	CTAGGGATTAGTC	.	128.0	44.0	121.0	0.0	.	78	.	.	Atlas-SNP
ATP8B4	79895	hgsc.bcm.edu	hg19	15	50331023	50331023	+	Missense_Mutation	SNP	G	G	A	rs372854928		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATP8B4	NM_024837	exon6	c.C304T	p.R102C	TGTGGCGAAACTG	.	94.0	28.0	141.0	0.0	.	173	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50884115	50884115	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRPM7	NM_017672	exon26	c.A4317G	p.A1439A	TACAAATGCTCCA	.	94.0	4.0	112.0	0.0	.	145	.	.	Atlas-SNP
ADAM10	102	hgsc.bcm.edu	hg19	15	58936169	58936169	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADAM10	NM_001110	exon7	c.T744C	p.S248S	AACATGACTGGAT	.	110.0	5.0	100.0	0.0	.	59	.	.	Atlas-SNP
SLTM	79811	hgsc.bcm.edu	hg19	15	59175873	59175873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLTM	NM_024755	exon20	c.G2948A	p.R983Q	CCCATTCGCCTCG	.	131.0	58.0	133.0	0.0	.	90	.	.	Atlas-SNP
C2CD4B	388125	hgsc.bcm.edu	hg19	15	62456187	62456187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C2CD4B	NM_001007595	exon2	c.G997A	p.A333T	GAACGGCCAGGCG	.	70.0	28.0	69.0	0.0	.	4	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	63009820	63009820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TLN2	NM_015059	exon21	c.G2809A	p.A937T	ATCGCCGCCTCCC	.	224.0	81.0	236.0	0.0	.	253	.	.	Atlas-SNP
PIF1	80119	hgsc.bcm.edu	hg19	15	65111379	65111379	+	Silent	SNP	C	C	T	rs374363106		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PIF1	NM_025049	exon9	c.G1377A	p.L459L	ACTGGCCAGCTCA	.	210.0	91.0	221.0	0.0	.	43	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72338646	72338646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYO9A	NM_006901	exon2	c.A259T	p.M87L	ACAGCATCATTCG	.	108.0	45.0	95.0	0.0	.	203	.	.	Atlas-SNP
ISLR2	57611	hgsc.bcm.edu	hg19	15	74426101	74426101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ISLR2,NS,carcinoma,0,1	ISLR2	NM_001130138	exon4	c.G1006A	p.A336T	GCCCTCGCAAATG	.	113.0	47.0	122.0	0.0	.	78	.	.	Atlas-SNP
EDC3	80153	hgsc.bcm.edu	hg19	15	74932931	74932931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EDC3	NM_001142444	exon6	c.T850C	p.Y284H	GCTCATAGGAAAT	.	114.0	43.0	112.0	0.0	.	32	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77471265	77471265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_024776	exon5	c.G3004A	p.V1002M	GATCCACACTGAG	.	76.0	29.0	55.0	0.0	.	.	.	.	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	hg19	15	83350208	83350208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AP3B2	NM_004644	exon5	c.G485A	p.R162Q	GTTTTCCGCACAT	.	80.0	38.0	76.0	0.0	.	103	.	.	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	hg19	15	85403072	85403072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ALPK3	NM_020778	exon8	c.A4637G	p.Y1546C	GTGTGTATCGGTG	.	82.0	31.0	95.0	0.0	.	289	.	.	Atlas-SNP
MFGE8	4240	hgsc.bcm.edu	hg19	15	89449105	89449105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MFGE8	NM_001114614	exon5	c.G568A	p.A190T	GCACCGCGTTTTT	.	140.0	56.0	163.0	0.0	.	60	.	.	Atlas-SNP
ABHD2	11057	hgsc.bcm.edu	hg19	15	89698708	89698708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABHD2	NM_007011	exon9	c.A481G	p.N161D	GTGCTGAACCACC	.	136.0	68.0	143.0	0.0	.	55	.	.	Atlas-SNP
MESP2	145873	hgsc.bcm.edu	hg19	15	90320134	90320134	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	MESP2,NS,carcinoma,0,1	MESP2	NM_001039958	exon1	c.A546G	p.Q182Q	GGGGCAAGGGCAG	.	20.0	4.0	50.0	1.0	.	20	.	.	Atlas-SNP
ASB7	140460	hgsc.bcm.edu	hg19	15	101152549	101152549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ASB7	NM_024708	exon4	c.G128A	p.R43Q	ATGGCCGAGATGC	.	177.0	76.0	149.0	0.0	.	32	.	.	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	599385	599385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SOLH	NM_005632	exon6	c.C1756T	p.R586W	CAGGTGCGGCTGT	.	56.0	13.0	50.0	0.0	.	47	.	.	Atlas-SNP
SOX8	30812	hgsc.bcm.edu	hg19	16	1033875	1033875	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SOX8	NM_014587	exon2	c.G570A	p.A190A	GGGCGCGGAGCTG	.	209.0	94.0	225.0	0.0	.	29	.	.	Atlas-SNP
UNKL	64718	hgsc.bcm.edu	hg19	16	1464671	1464671	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UNKL	NM_001193388	exon1	c.G22C	p.A8P	CTGCCGCCGCTTT	.	81.0	33.0	62.0	0.0	.	46	.	.	Atlas-SNP
NTHL1	4913	hgsc.bcm.edu	hg19	16	2093714	2093714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NTHL1	NM_002528	exon4	c.A563G	p.Y188C	TTGATGTATTTCA	.	35.0	15.0	46.0	0.0	.	24	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2818134	2818134	+	Silent	SNP	G	G	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SRRM2,bladder,carcinoma,+1,1	SRRM2	NM_016333	exon11	c.G7605C	p.S2535S	CTCCTCGTCGTCG	.	60.0	16.0	43.0	0.0	.	263	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3293875	3293875	+	Missense_Mutation	SNP	C	C	T	rs375665850		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MEFV	NM_000243	exon9	c.G1777A	p.A593T	CCTGAGCGCCAAT	.	194.0	72.0	216.0	0.0	.	170	.	.	Atlas-SNP
TRAP1	10131	hgsc.bcm.edu	hg19	16	3712966	3712966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	TRAP1,colon,carcinoma,0,1	TRAP1	NM_016292	exon15	c.G1711A	p.A571T	ACTCGGCGGCTGC	.	25.0	8.0	16.0	0.0	.	53	.	.	Atlas-SNP
GSPT1	2935	hgsc.bcm.edu	hg19	16	11981478	11981478	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GSPT1	NM_002094	exon7	c.T906C	p.S302S	GACAAAACTCTTG	.	190.0	78.0	212.0	0.0	.	71	.	.	Atlas-SNP
ERCC4	2072	hgsc.bcm.edu	hg19	16	14041629	14041629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ERCC4	NM_005236	exon11	c.C2176T	p.R726C	GTGGAGCGCAAGA	.	106.0	34.0	93.0	0.0	.	100	.	.	Atlas-SNP
PARN	5073	hgsc.bcm.edu	hg19	16	14721031	14721031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PARN	NM_002582	exon5	c.T259G	p.S87A	TAAATGACTTCGT	.	164.0	61.0	142.0	0.0	.	72	.	.	Atlas-SNP
NTAN1	123803	hgsc.bcm.edu	hg19	16	15131931	15131931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	NTAN1	NM_173474	exon10	c.A890C	p.N297T	TCTTCATTTTTTT	.	126.0	10.0	145.0	0.0	.	21	.	.	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	hg19	16	16177388	16177388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABCC1	NM_004996	exon17	c.A2281T	p.I761F	ACAGAGATTGGCG	.	131.0	27.0	161.0	0.0	.	156	.	.	Atlas-SNP
OTOA	146183	hgsc.bcm.edu	hg19	16	21702950	21702950	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OTOA	NM_144672	exon8	c.C681T	p.S227S	TCATTCCCAGAGA	.	117.0	20.0	86.0	0.0	.	144	.	.	Atlas-SNP
OTOA	146183	hgsc.bcm.edu	hg19	16	21702955	21702955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OTOA	NM_144672	exon8	c.G686A	p.R229K	CCCAGAGAGCTCT	.	121.0	21.0	86.0	0.0	.	144	.	.	Atlas-SNP
OTOA	146183	hgsc.bcm.edu	hg19	16	21721362	21721362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OTOA	NM_144672	exon12	c.G1258A	p.V420I	AACCAGGTCTCAG	.	151.0	49.0	120.0	0.0	.	144	.	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27752080	27752080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA0556	NM_015202	exon15	c.A2462G	p.N821S	GTGTCAACACCAA	.	143.0	53.0	133.0	0.0	.	348	.	.	Atlas-SNP
MVP	9961	hgsc.bcm.edu	hg19	16	29848108	29848108	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MVP	NM_017458	exon7	c.G738A	p.G246G	CACTGGGGAGGAG	.	119.0	45.0	106.0	0.0	.	80	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30727435	30727435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SRCAP	NM_006662	exon17	c.C2542T	p.Q848X	GAGAAGCAGATGC	.	87.0	29.0	95.0	0.0	.	298	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30734920	30734920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SRCAP	NM_006662	exon25	c.C4175A	p.A1392D	CCGGAGCTGCCCC	.	82.0	30.0	73.0	0.0	.	298	.	.	Atlas-SNP
STX1B	112755	hgsc.bcm.edu	hg19	16	31008338	31008338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STX1B	NM_052874	exon6	c.T397A	p.Y133N	CGTTATATTCGGT	.	74.0	25.0	64.0	0.0	.	26	.	.	Atlas-SNP
FUS	2521	hgsc.bcm.edu	hg19	16	31196408	31196408	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FUS	NM_004960	exon6	c.C672T	p.G224G	TGGCGGCGGCGGC	.	73.0	29.0	72.0	0.0	.	52	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51173443	51173443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SALL1	NM_002968	exon2	c.T2690C	p.V897A	GTCAGGACATCCC	.	110.0	49.0	82.0	0.0	.	301	.	.	Atlas-SNP
CPNE2	221184	hgsc.bcm.edu	hg19	16	57144691	57144691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CPNE2	NM_152727	exon2	c.G37A	p.G13R	GCAGCGGGGGCAG	.	124.0	50.0	156.0	0.0	.	48	.	.	Atlas-SNP
KIFC3	3801	hgsc.bcm.edu	hg19	16	57794959	57794959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIFC3	NM_001130100	exon15	c.C1997T	p.T666I	CCCGTGGTGCGGA	.	29.0	11.0	40.0	0.0	.	55	.	.	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	hg19	16	57937813	57937813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CNGB1	NM_001297	exon27	c.T2707C	p.Y903H	TCATGTACTTCAC	.	72.0	30.0	71.0	0.0	.	105	.	.	Atlas-SNP
B3GNT9	84752	hgsc.bcm.edu	hg19	16	67184217	67184217	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	B3GNT9	NM_033309	exon2	c.T172C	p.L58L	CGGGTAACTGGAA	.	108.0	39.0	138.0	0.0	.	25	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	hg19	16	67683180	67683180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RLTPR	NM_001013838	exon19	c.A1712G	p.H571R	TCCTGCACCGGAT	.	48.0	19.0	59.0	0.0	.	124	.	.	Atlas-SNP
RANBP10	57610	hgsc.bcm.edu	hg19	16	67765413	67765413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	RANBP10,NS,lymphoid_neoplasm,0,1	RANBP10	NM_020850	exon7	c.C851T	p.P284L	TGAATCGGGGTTT	.	117.0	49.0	169.0	0.0	.	56	.	.	Atlas-SNP
PSKH1	5681	hgsc.bcm.edu	hg19	16	67943147	67943147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PSKH1	NM_006742	exon2	c.G495T	p.Q165H	GACACAGGAGCGG	.	115.0	37.0	129.0	0.0	.	28	.	.	Atlas-SNP
TERF2	7014	hgsc.bcm.edu	hg19	16	69418537	69418537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TERF2	NM_005652	exon3	c.A552T	p.E184D	TGTAAATTCCGTT	.	98.0	39.0	91.0	0.0	.	24	.	.	Atlas-SNP
MTSS1L	92154	hgsc.bcm.edu	hg19	16	70708260	70708260	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MTSS1L	NM_138383	exon11	c.C1002T	p.D334D	GGTGGCGTCCTGG	.	102.0	42.0	123.0	0.0	.	22	.	.	Atlas-SNP
ZNF19	7567	hgsc.bcm.edu	hg19	16	71509598	71509598	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF19	NM_006961	exon6	c.T852C	p.G284G	TGAATTACCAACA	.	111.0	45.0	110.0	0.0	.	46	.	.	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	hg19	16	72157448	72157448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PMFBP1	NM_031293	exon18	c.A2690G	p.Q897R	CACTTCTGCTGTT	.	99.0	32.0	81.0	0.0	.	101	.	.	Atlas-SNP
ZNRF1	84937	hgsc.bcm.edu	hg19	16	75033861	75033861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNRF1	NM_032268	exon1	c.G292A	p.A98T	ACCTATGCCCATG	.	74.0	21.0	93.0	0.0	.	6	.	.	Atlas-SNP
GAN	8139	hgsc.bcm.edu	hg19	16	81411036	81411036	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GAN	NM_022041	exon11	c.C1629T	p.Y543Y	CGACTACGTGCGT	.	136.0	11.0	113.0	0.0	.	59	.	.	Atlas-SNP
CTU2	348180	hgsc.bcm.edu	hg19	16	88779224	88779224	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CTU2	NM_001012759	exon7	c.G648A	p.P216P	AAGACCGCCTGCC	.	120.0	44.0	128.0	0.0	.	66	.	.	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	hg19	16	88793275	88793275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PIEZO1	NM_001142864	exon25	c.A3547G	p.S1183G	AGATGCTGATGCG	.	175.0	52.0	163.0	0.0	.	79	.	.	Atlas-SNP
ZNF276	92822	hgsc.bcm.edu	hg19	16	89804261	89804261	+	Missense_Mutation	SNP	C	C	T	rs149209309	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF276	NM_001113525	exon10	c.C1522T	p.R508W	AAGCAGCGGAAGC	.	166.0	7.0	156.0	0.0	.	70	.	C|1.000;G|0.000	Atlas-SNP
CENPBD1	92806	hgsc.bcm.edu	hg19	16	90037950	90037950	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CENPBD1	NM_145039	exon1	c.C381T	p.G127G	ACCTTCGCCATGT	.	188.0	67.0	215.0	0.0	.	18	.	.	Atlas-SNP
SRR	63826	hgsc.bcm.edu	hg19	17	2227123	2227123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SRR	NM_021947	exon8	c.A979G	p.K327E	TGGGTGAAGCAGG	.	67.0	6.0	99.0	0.0	.	21	.	.	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	hg19	17	2911342	2911342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RAP1GAP2	NM_015085	exon17	c.A1397G	p.D466G	TTCACGATGAGCT	.	52.0	42.0	116.0	0.0	.	90	.	.	Atlas-SNP
OR1A1	8383	hgsc.bcm.edu	hg19	17	3119841	3119841	+	Silent	SNP	G	G	A	rs142898585		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR1A1	NM_014565	exon1	c.G927A	p.S309S	CTCCTCGTAACCA	.	28.0	18.0	72.0	0.0	.	54	.	G|1.000;A|0.000	Atlas-SNP
TM4SF5	9032	hgsc.bcm.edu	hg19	17	4686302	4686302	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TM4SF5	NM_003963	exon4	c.T549C	p.G183G	CATTGGTGTCTTC	.	95.0	28.0	197.0	0.0	.	26	.	.	Atlas-SNP
DVL2	1856	hgsc.bcm.edu	hg19	17	7130768	7130768	+	Missense_Mutation	SNP	G	G	A	rs372746877		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DVL2	NM_004422	exon12	c.C1318T	p.R440W	GGTCCCGGACTTC	.	51.0	39.0	105.0	0.0	.	49	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7667529	7667529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAH2	NM_020877	exon19	c.A3274T	p.I1092F	ACTCAGATCCCTC	.	219.0	149.0	408.0	0.0	.	498	.	.	Atlas-SNP
C17orf59	54785	hgsc.bcm.edu	hg19	17	8092992	8092992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C17orf59	NM_017622	exon1	c.G467A	p.G156D	GAGCGGCCGGCTC	.	23.0	10.0	30.0	0.0	.	19	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10408257	10408257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYH1	NM_005963	exon22	c.C2561T	p.A854V	ATGTTGGCCATCT	.	166.0	43.0	114.0	0.0	.	403	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12906873	12906873	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ELAC2	NM_173717	exon12	c.T1002C	p.D334D	GGGGGCATCTGCC	.	65.0	23.0	59.0	0.0	.	48	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12919138	12919138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ELAC2	NM_001165962	exon4	c.A379G	p.T127A	TTAAAGTAAGAAT	.	132.0	17.0	123.0	0.0	.	48	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12921261	12921261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ELAC2	NM_001165962	exon1	c.T4C	p.W2R	GCGCCCACATGCG	.	46.0	8.0	72.0	0.0	.	48	.	.	Atlas-SNP
LLGL1	3996	hgsc.bcm.edu	hg19	17	18138832	18138832	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LLGL1	NM_004140	exon11	c.C1333T	p.R445X	TCACAGCGAGGGC	.	83.0	34.0	55.0	0.0	.	61	.	.	Atlas-SNP
MAPK7	5598	hgsc.bcm.edu	hg19	17	19284128	19284128	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAPK7	NM_002749	exon4	c.T606C	p.G202G	CTTTGGTATGGCT	.	128.0	61.0	108.0	0.0	.	72	.	.	Atlas-SNP
C17orf51	339263	hgsc.bcm.edu	hg19	17	21438727	21438727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C17orf51	NM_001113434	exon2	c.C500A	p.A167D	TCTGGGGCACTTC	.	54.0	23.0	67.0	0.0	.	24	.	.	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26096024	26096024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NOS2	NM_000625	exon17	c.C2013A	p.S671R	GGCCCAGCTGCGG	.	34.0	15.0	27.0	0.0	.	113	.	.	Atlas-SNP
SLC46A1	113235	hgsc.bcm.edu	hg19	17	26731651	26731651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC46A1	NM_001242366	exon2	c.C1064T	p.T355M	AGAGGCGTGATAG	.	99.0	45.0	96.0	0.0	.	17	.	.	Atlas-SNP
SLC46A1	113235	hgsc.bcm.edu	hg19	17	26732401	26732401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC46A1	NM_001242366	exon2	c.G314A	p.G105E	CAAGCTCCCAGCA	.	182.0	72.0	180.0	0.0	.	17	.	.	Atlas-SNP
NEK8	284086	hgsc.bcm.edu	hg19	17	27061037	27061037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NEK8	NM_178170	exon2	c.G84T	p.K28N	CCAGAAGCTGGTG	.	90.0	24.0	89.0	0.0	.	76	.	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28419089	28419089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	EFCAB5,NS,carcinoma,0,1	EFCAB5	NM_198529	exon21	c.C4138T	p.R1380C	CTAGTGCGTGACA	.	143.0	43.0	163.0	0.0	.	122	.	.	Atlas-SNP
PSMD11	5717	hgsc.bcm.edu	hg19	17	30806365	30806365	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PSMD11	NM_002815	exon10	c.C1009T	p.R337X	CTGATCCGAGTCA	.	93.0	36.0	136.0	0.0	.	41	.	.	Atlas-SNP
LIG3	3980	hgsc.bcm.edu	hg19	17	33325644	33325644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LIG3	NM_013975	exon14	c.C2011T	p.R671W	GGGAAGCGGCACT	.	83.0	33.0	84.0	0.0	.	164	.	.	Atlas-SNP
LIG3	3980	hgsc.bcm.edu	hg19	17	33329755	33329755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LIG3	NM_013975	exon19	c.G2743T	p.V915L	TCTCCAGTGAAAG	.	224.0	89.0	234.0	0.0	.	164	.	.	Atlas-SNP
CCL15	6359	hgsc.bcm.edu	hg19	17	34324830	34324830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCL15	NM_032965	exon4	c.G315A	p.M105I	CTTTTTCATGCAA	.	103.0	7.0	76.0	0.0	.	15	.	.	Atlas-SNP
AATF	26574	hgsc.bcm.edu	hg19	17	35310201	35310201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AATF	NM_012138	exon3	c.A299G	p.D100G	TATCTGATGAGGA	.	165.0	55.0	156.0	0.0	.	36	.	.	Atlas-SNP
AATF	26574	hgsc.bcm.edu	hg19	17	35346611	35346611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AATF	NM_012138	exon7	c.A1215T	p.R405S	AGAGAGATTACTT	.	73.0	25.0	89.0	0.0	.	36	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35620662	35620662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ACACA_ENST00000353139,NS,malignant_melanoma,0,2	ACACA	NM_198834	exon11	c.C1255T	p.R419C	GCCTGCGTTGTAC	.	142.0	62.0	123.0	0.0	.	395	.	.	Atlas-SNP
MED1	5469	hgsc.bcm.edu	hg19	17	37584012	37584012	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MED1	NM_004774	exon10	c.T681C	p.S227S	AGAAGGAGAGACA	.	96.0	36.0	88.0	0.0	.	123	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38183700	38183700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	MED24,NS,carcinoma,0,1	MED24	NM_014815	exon16	c.G1466A	p.R489Q	AGGGCCCGGACGG	.	112.0	53.0	167.0	0.0	.	89	.	.	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	hg19	17	39034421	39034421	+	Missense_Mutation	SNP	C	C	T	rs377652428		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KRT20	NM_019010	exon6	c.G1115A	p.R372H	AGAAGGCGGCGGT	.	90.0	39.0	97.0	0.0	.	38	.	.	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	hg19	17	39041125	39041125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KRT20	NM_019010	exon1	c.T313G	p.W105G	CGTACCACTGCTT	.	122.0	6.0	117.0	0.0	.	38	.	.	Atlas-SNP
KRT31	3881	hgsc.bcm.edu	hg19	17	39551555	39551555	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KRT31	NM_002277	exon5	c.T818A	p.I273N	AGCTCGATGATCT	.	105.0	42.0	107.0	0.0	.	158	.	.	Atlas-SNP
NT5C3B	115024	hgsc.bcm.edu	hg19	17	39983842	39983842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_052935	exon8	c.A604G	p.T202A	TGTATGTGTGTAT	.	184.0	60.0	209.0	0.0	.	.	.	.	Atlas-SNP
DHX58	79132	hgsc.bcm.edu	hg19	17	40263791	40263791	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DHX58	NM_024119	exon3	c.G120T	p.R40R	TAGGTGCCGCTTG	.	108.0	29.0	87.0	0.0	.	39	.	.	Atlas-SNP
VPS25	84313	hgsc.bcm.edu	hg19	17	40928326	40928326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VPS25	NM_032353	exon5	c.A406G	p.T136A	GAAGACACAGAGG	.	145.0	52.0	153.0	0.0	.	11	.	.	Atlas-SNP
MPP3	4356	hgsc.bcm.edu	hg19	17	41907454	41907454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MPP3	NM_001932	exon6	c.G244A	p.A82T	CGGAGGCGGCCTG	.	47.0	25.0	37.0	0.0	.	42	.	.	Atlas-SNP
TMEM101	84336	hgsc.bcm.edu	hg19	17	42089395	42089395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM101	NM_032376	exon4	c.G675T	p.W225C	GTTGTGCCAGTAA	.	88.0	40.0	81.0	0.0	.	18	.	.	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	hg19	17	42171119	42171119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	HDAC5,NS,carcinoma,0,1	HDAC5	NM_001015053	exon4	c.C181T	p.R61W	CCCCCCGTAGCTC	.	143.0	58.0	118.0	0.0	.	67	.	.	Atlas-SNP
NMT1	4836	hgsc.bcm.edu	hg19	17	43171104	43171104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NMT1	NM_021079	exon4	c.G437A	p.R146H	ATATCCGCCAGGA	.	71.0	26.0	66.0	0.0	.	31	.	.	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	hg19	17	44108889	44108889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	KIAA1267,face,carcinoma,0,1	.	NM_001193466	exon15	c.C3271T	p.R1091W	GATGCCGACTCTT	.	88.0	30.0	98.0	0.0	.	.	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45363766	45363766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ITGB3	NM_000212	exon5	c.T755C	p.I252T	ATGCCATCATGCA	.	88.0	32.0	79.0	0.0	.	157	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45895948	45895948	+	Missense_Mutation	SNP	G	G	A	rs368110786		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OSBPL7	NM_145798	exon6	c.C404T	p.A135V	AGCTGCGCCACCC	.	81.0	36.0	72.0	0.0	.	65	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45896429	45896429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OSBPL7	NM_145798	exon5	c.C292T	p.R98W	ACAGCCGGACATC	.	102.0	35.0	110.0	0.0	.	65	.	.	Atlas-SNP
HOXB7	3217	hgsc.bcm.edu	hg19	17	46687954	46687954	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HOXB7	NM_004502	exon1	c.C327T	p.G109G	CTTGGCGCCCGCC	.	199.0	83.0	198.0	0.0	.	15	.	.	Atlas-SNP
HOXB13	10481	hgsc.bcm.edu	hg19	17	46805444	46805444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HOXB13	NM_006361	exon1	c.C512A	p.S171Y	GCCCAAGACTGGT	.	146.0	71.0	112.0	0.0	.	28	.	.	Atlas-SNP
ZNF652	22834	hgsc.bcm.edu	hg19	17	47389292	47389292	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ZNF652,colon,carcinoma,0,1	ZNF652	NM_001145365	exon4	c.C1161T	p.C387C	TACCTCGCATCTA	.	116.0	31.0	121.0	0.0	.	54	.	.	Atlas-SNP
SAMD14	201191	hgsc.bcm.edu	hg19	17	48191303	48191303	+	Silent	SNP	G	G	A	rs367685385		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SAMD14	NM_174920	exon10	c.C1167T	p.D389D	GCTTCCGTCCAGC	.	167.0	79.0	154.0	0.0	.	36	.	.	Atlas-SNP
EME1	146956	hgsc.bcm.edu	hg19	17	48452870	48452870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EME1	NM_152463	exon2	c.A301G	p.T101A	AGGCTTACATGTA	.	156.0	71.0	180.0	0.0	.	39	.	.	Atlas-SNP
NME1	4830	hgsc.bcm.edu	hg19	17	49233116	49233116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NME1	NM_198175	exon3	c.G176A	p.R59H	GATTCCGCCTTGT	.	139.0	32.0	138.0	0.0	.	12	.	.	Atlas-SNP
PPM1D	8493	hgsc.bcm.edu	hg19	17	58740416	58740416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PPM1D,colon,carcinoma,0,1	PPM1D	NM_003620	exon6	c.C1321T	p.R441C	CTGGTTCGTAGCA	.	160.0	65.0	148.0	0.0	.	50	.	.	Atlas-SNP
CD79B	974	hgsc.bcm.edu	hg19	17	62007735	62007735	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CD79B	NM_001039933	exon3	c.T132C	p.C44C	CCGCGAACAAGCA	.	81.0	28.0	62.0	0.0	.	38	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65862621	65862621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BPTF	NM_004459	exon3	c.A1478G	p.Y493C	TTTGGTATTACAG	.	152.0	71.0	175.0	0.0	.	415	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	66972304	66972304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABCA9	NM_080283	exon38	c.A4748G	p.Y1583C	AGGCTGTACTCCT	.	217.0	59.0	197.0	0.0	.	192	.	.	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	hg19	17	72840513	72840513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GRIN2C	NM_000835	exon12	c.G2485A	p.A829T	GCAGGGCCAGCCC	.	133.0	52.0	135.0	0.0	.	144	.	.	Atlas-SNP
KIAA0195	9772	hgsc.bcm.edu	hg19	17	73490855	73490855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA0195	NM_014738	exon19	c.T2555C	p.V852A	GCTTTGTCTACTT	.	127.0	46.0	116.0	0.0	.	102	.	.	Atlas-SNP
GALK1	2584	hgsc.bcm.edu	hg19	17	73754367	73754367	+	Missense_Mutation	SNP	G	G	A	rs371517491		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GALK1	NM_000154	exon7	c.C1031T	p.T344M	CCGCCCGTCATGC	.	94.0	32.0	90.0	0.0	.	17	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73910972	73910972	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FBF1	NM_001080542	exon24	c.C2625T	p.C875C	CTCCCCGCACTTG	.	81.0	28.0	75.0	0.0	.	48	.	.	Atlas-SNP
GALR2	8811	hgsc.bcm.edu	hg19	17	74072920	74072920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GALR2	NM_003857	exon2	c.C572A	p.T191N	TCTGCACCTTCGT	.	52.0	21.0	51.0	0.0	.	17	.	.	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77081342	77081342	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ENGASE	NM_001042573	exon12	c.C1618T	p.R540X	AGCCTCCGACCCC	.	262.0	198.0	502.0	1.0	.	55	.	.	Atlas-SNP
ANAPC11	51529	hgsc.bcm.edu	hg19	17	79857927	79857927	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANAPC11	NM_001002247	exon3	c.A241T	p.K81X	GAATGGAAGTTCA	.	50.0	34.0	97.0	0.0	.	1	.	.	Atlas-SNP
ENOSF1	55556	hgsc.bcm.edu	hg19	18	675343	675343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ENOSF1	NM_202758	exon14	c.G1229A	p.R410Q	GAAGCCCGCTGGA	.	126.0	57.0	103.0	0.0	.	44	.	.	Atlas-SNP
CHMP1B	57132	hgsc.bcm.edu	hg19	18	11851635	11851635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHMP1B	NM_020412	exon1	c.A125C	p.K42T	TTCAGAAGGGCAA	.	107.0	6.0	91.0	0.0	.	16	.	.	Atlas-SNP
ROCK1	6093	hgsc.bcm.edu	hg19	18	18625320	18625320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ROCK1	NM_005406	exon5	c.G523A	p.A175T	ATCGTGCCCATTT	.	69.0	23.0	52.0	0.0	.	162	.	.	Atlas-SNP
NPC1	4864	hgsc.bcm.edu	hg19	18	21136382	21136382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NPC1	NM_000271	exon8	c.C1151T	p.P384L	CTGCTGGGGGCTG	.	182.0	84.0	175.0	0.0	.	114	.	.	Atlas-SNP
DSC3	1825	hgsc.bcm.edu	hg19	18	28584133	28584133	+	Silent	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DSC3	NM_024423	exon13	c.A2088T	p.I696I	CAGTAATATTGCA	.	115.0	41.0	115.0	0.0	.	225	.	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	hg19	18	42532195	42532195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SETBP1	NM_015559	exon4	c.T2890C	p.F964L	ACCAAGTTCCAAG	.	150.0	11.0	176.0	0.0	.	577	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44098132	44098132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LOXHD1	NM_144612	exon33	c.G5173A	p.G1725R	TGCTCCCGTTGAT	.	87.0	42.0	108.0	0.0	.	367	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	52895534	52895534	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TCF4	NM_001243226	exon20	c.C2244T	p.S748S	CTCTGAGGACACC	.	74.0	15.0	65.0	0.0	.	178	.	.	Atlas-SNP
ST8SIA3	51046	hgsc.bcm.edu	hg19	18	55024435	55024435	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ST8SIA3	NM_015879	exon3	c.A594G	p.Q198Q	TTTCCAAAGAGAT	.	151.0	47.0	158.0	0.0	.	73	.	.	Atlas-SNP
VPS4B	9525	hgsc.bcm.edu	hg19	18	61071042	61071042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VPS4B	NM_004869	exon5	c.C382T	p.R128X	TTGGTCGTTCTAT	.	67.0	25.0	66.0	0.0	.	33	.	.	Atlas-SNP
TMX3	54495	hgsc.bcm.edu	hg19	18	66377257	66377257	+	Splice_Site	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMX3	NM_019022	exon5	c.265+1G>C	.	GGCTTACTAGAAT	.	90.0	17.0	96.0	0.0	.	44	.	.	Atlas-SNP
CD226	10666	hgsc.bcm.edu	hg19	18	67614087	67614087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CD226	NM_006566	exon3	c.A265G	p.N89D	TGTTATTGGAAGC	.	210.0	18.0	245.0	0.0	.	51	.	.	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	hg19	18	77488909	77488909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CTDP1,NS,carcinoma,0,1	CTDP1	NM_004715	exon11	c.C2420T	p.A807V	TCAGAGCGGTTCC	.	53.0	9.0	67.0	0.0	.	67	.	.	Atlas-SNP
ADNP2	22850	hgsc.bcm.edu	hg19	18	77895803	77895803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADNP2	NM_014913	exon4	c.A2507T	p.E836V	TTGGGGAGCGGGA	.	49.0	13.0	48.0	0.0	.	102	.	.	Atlas-SNP
SHC2	25759	hgsc.bcm.edu	hg19	19	438994	438994	+	Silent	SNP	G	G	A	rs372414911		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SHC2	NM_012435	exon3	c.C576T	p.G192G	CCGGACGCCAGGC	.	145.0	95.0	244.0	0.0	.	47	.	.	Atlas-SNP
PTBP1	5725	hgsc.bcm.edu	hg19	19	804698	804698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTBP1	NM_031990	exon6	c.A602G	p.H201R	TGCTGCACCAGGT	.	32.0	19.0	68.0	0.0	.	43	.	.	Atlas-SNP
STK11	6794	hgsc.bcm.edu	hg19	19	1218439	1218439	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STK11	NM_000455	exon2	c.T314G	p.L105X	GGAGGTTACGGCA	.	70.0	31.0	94.0	0.0	.	410	.	.	Atlas-SNP
ADAMTSL5	339366	hgsc.bcm.edu	hg19	19	1510710	1510710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADAMTSL5	NM_213604	exon3	c.C119T	p.P40L	ACCCACGGGGTCC	.	84.0	52.0	206.0	0.0	.	24	.	.	Atlas-SNP
TCF3	6929	hgsc.bcm.edu	hg19	19	1625583	1625583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TCF3	NM_003200	exon7	c.G491A	p.G164D	AGGCTGCCGTCTG	.	127.0	87.0	169.0	0.0	.	72	.	.	Atlas-SNP
REXO1	57455	hgsc.bcm.edu	hg19	19	1827184	1827184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	REXO1	NM_020695	exon2	c.T1604C	p.V535A	CTCGGCACCCCTG	.	28.0	18.0	61.0	0.0	.	55	.	.	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2193778	2193778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DOT1L	NM_032482	exon6	c.C584T	p.A195V	AGTATGCGGAGGT	.	26.0	16.0	54.0	0.0	.	205	.	.	Atlas-SNP
LINGO3	645191	hgsc.bcm.edu	hg19	19	2290416	2290416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LINGO3	NM_001101391	exon2	c.G1360A	p.A454T	GGCCCGCGCTGGT	.	13.0	11.0	25.0	0.0	.	19	.	.	Atlas-SNP
SEMA6B	10501	hgsc.bcm.edu	hg19	19	4548377	4548377	+	Missense_Mutation	SNP	G	G	A	rs145507498		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SEMA6B	NM_032108	exon13	c.C1352T	p.A451V	GTCCCCGCCTCAG	.	140.0	61.0	122.0	0.0	.	51	.	G|1.000;A|0.000	Atlas-SNP
ARRDC5	645432	hgsc.bcm.edu	hg19	19	4891359	4891359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARRDC5	NM_001080523	exon3	c.C728T	p.S243F	AGCCGAGACCGCC	.	48.0	17.0	56.0	0.0	.	19	.	.	Atlas-SNP
ARRDC5	645432	hgsc.bcm.edu	hg19	19	4891371	4891371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARRDC5	NM_001080523	exon3	c.C716A	p.A239E	CGCTCTGCACTGG	.	51.0	17.0	55.0	0.0	.	19	.	.	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	hg19	19	5119732	5119732	+	Missense_Mutation	SNP	C	C	T	rs374489612		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KDM4B	NM_015015	exon11	c.C1184T	p.T395M	AGGGTACGGCTGG	.	181.0	155.0	194.0	1.0	.	120	.	.	Atlas-SNP
SAFB2	9667	hgsc.bcm.edu	hg19	19	5604862	5604862	+	Missense_Mutation	SNP	G	G	A	rs142026681		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SAFB2	NM_014649	exon10	c.C1382T	p.A461V	TTGGTCGCCTCGT	.	62.0	18.0	83.0	0.0	.	90	.	G|1.000;A|0.000	Atlas-SNP
SAFB	6294	hgsc.bcm.edu	hg19	19	5661679	5661679	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SAFB	NM_002967	exon15	c.C2013T	p.R671R	GGAGCGCGAACGC	.	118.0	10.0	129.0	0.0	.	74	.	.	Atlas-SNP
TRIP10	9322	hgsc.bcm.edu	hg19	19	6743585	6743585	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIP10	NM_004240	exon6	c.C489T	p.N163N	TATCAACGCCACC	.	65.0	20.0	53.0	0.0	.	104	.	.	Atlas-SNP
ZNF358	140467	hgsc.bcm.edu	hg19	19	7585482	7585482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF358	NM_018083	exon2	c.C1354A	p.L452I	TTGGGCCTCAGCC	.	110.0	49.0	93.0	0.0	.	41	.	.	Atlas-SNP
XAB2	56949	hgsc.bcm.edu	hg19	19	7687717	7687717	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	XAB2,NS,carcinoma,0,2	XAB2	NM_020196	exon10	c.C1302T	p.S434S	CCACACGCTTGCC	.	103.0	9.0	101.0	0.0	.	69	.	.	Atlas-SNP
CERS4	79603	hgsc.bcm.edu	hg19	19	8320763	8320763	+	Silent	SNP	C	C	T	rs368700192		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_024552	exon6	c.C468T	p.H156H	GTACCACGTGAGT	.	52.0	19.0	47.0	0.0	.	.	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9071612	9071612	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MUC16	NM_024690	exon3	c.T15834C	p.S5278S	CGATGCAGACTCA	.	116.0	5.0	93.0	0.0	.	4315	.	.	Atlas-SNP
ZNF266	10781	hgsc.bcm.edu	hg19	19	9524021	9524021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF266	NM_001271314	exon11	c.A1580C	p.K527T	AAGGCTTTCCCGC	.	124.0	43.0	127.0	0.0	.	65	.	.	Atlas-SNP
PPAN-P2RY11	692312	hgsc.bcm.edu	hg19	19	10225062	10225062	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPAN-P2RY11	NM_001040664	exon13	c.C2033G	p.A678G	TCTACGCCAGCTC	.	57.0	29.0	59.0	0.0	.	81	.	.	Atlas-SNP
ICAM5	7087	hgsc.bcm.edu	hg19	19	10405166	10405166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ICAM5	NM_003259	exon9	c.G2080A	p.G694S	GCCCGGGGTCGCC	.	130.0	51.0	142.0	0.0	.	53	.	.	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	hg19	19	10748543	10748543	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC44A2	NM_020428	exon18	c.C1707T	p.Y569Y	CATCTACGGCACC	.	99.0	34.0	118.0	0.0	.	56	.	.	Atlas-SNP
LDLR	3949	hgsc.bcm.edu	hg19	19	11217304	11217304	+	Missense_Mutation	SNP	G	G	A	rs139507589		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LDLR	NM_001195798	exon5	c.G758A	p.R253Q	GCAGCCGGCAGTG	.	118.0	46.0	136.0	0.0	.	72	.	G|1.000;A|0.000	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	hg19	19	12059373	12059373	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF700	NM_001271848	exon4	c.C543T	p.R181R	GTATCGCCCATCC	.	161.0	8.0	156.0	0.0	.	81	.	.	Atlas-SNP
NANOS3	342977	hgsc.bcm.edu	hg19	19	13988407	13988407	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NANOS3	NM_001098622	exon1	c.C345T	p.C115C	CCAGTGCGGCGCC	.	56.0	24.0	69.0	0.0	.	19	.	.	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14024359	14024359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CC2D1A,NS,carcinoma,0,1	CC2D1A	NM_017721	exon6	c.C656T	p.A219V	GAATCGCGTCAGC	.	171.0	64.0	180.0	1.0	.	67	.	.	Atlas-SNP
TPM4	7171	hgsc.bcm.edu	hg19	19	16192750	16192750	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TPM4	NM_001145160	exon3	c.C268T	p.R90X	CTCAACCGACGCA	.	48.0	23.0	55.0	0.0	.	28	.	.	Atlas-SNP
TMEM38A	79041	hgsc.bcm.edu	hg19	19	16797152	16797152	+	Missense_Mutation	SNP	G	G	A	rs78725797	bycluster	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM38A	NM_024074	exon5	c.G608A	p.R203H	AGACCCGCTGGCT	.	44.0	13.0	48.0	0.0	.	32	.	.	Atlas-SNP
ANO8	57719	hgsc.bcm.edu	hg19	19	17434419	17434419	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANO8	NM_020959	exon18	c.A3606G	p.L1202L	GGGCGGTAGCGGT	.	44.0	4.0	48.0	0.0	.	67	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22155265	22155265	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF208	NM_007153	exon4	c.A2571G	p.G857G	TTTCTCTCCAGTA	.	42.0	15.0	52.0	0.0	.	817	.	.	Atlas-SNP
URI1	8725	hgsc.bcm.edu	hg19	19	30503420	30503420	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_003796	exon10	c.C1407A	p.P469P	TTTGCCCTTATCA	.	106.0	41.0	88.0	0.0	.	.	.	.	Atlas-SNP
CHST8	64377	hgsc.bcm.edu	hg19	19	34263780	34263780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CHST8	NM_001127895	exon5	c.C1087T	p.R363C	CTCATCCGCGCGC	.	91.0	41.0	102.0	0.0	.	70	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36357195	36357195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIRREL2	NM_199180	exon15	c.A1928G	p.N643S	ACTTCAACCCACA	.	82.0	33.0	67.0	0.0	.	170	.	.	Atlas-SNP
ZNF461	92283	hgsc.bcm.edu	hg19	19	37130266	37130266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF461	NM_153257	exon6	c.A981C	p.K327N	ATAGGGTTTTTCA	.	104.0	38.0	117.0	0.0	.	73	.	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	hg19	19	38573540	38573540	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIPA1L3	NM_015073	exon3	c.C1335T	p.S445S	CTTCTCCCGGGCT	.	85.0	39.0	96.0	0.0	.	150	.	.	Atlas-SNP
MAP4K1	11184	hgsc.bcm.edu	hg19	19	39096218	39096218	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAP4K1	NM_007181	exon18	c.C1353T	p.T451T	ATGGGCGGTGAGG	.	81.0	33.0	108.0	0.0	.	165	.	.	Atlas-SNP
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39329068	39329068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HNRNPL	NM_001533	exon10	c.C1526T	p.P509L	TCCAGCGGGGCGT	.	109.0	39.0	78.0	0.0	.	67	.	.	Atlas-SNP
ADCK4	79934	hgsc.bcm.edu	hg19	19	41219998	41219998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADCK4	NM_001142555	exon4	c.G263A	p.R88H	CTGATGCGGGAGG	.	142.0	28.0	145.0	0.0	.	92	.	.	Atlas-SNP
SNRPA	6626	hgsc.bcm.edu	hg19	19	41268862	41268862	+	Silent	SNP	G	G	A	rs374030639		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SNRPA	NM_004596	exon4	c.G483A	p.P161P	CCAGCCGCCCTAC	.	154.0	7.0	125.0	0.0	.	20	.	.	Atlas-SNP
EGLN2	112398	hgsc.bcm.edu	hg19	19	41307129	41307129	+	Missense_Mutation	SNP	C	C	T	rs140368149		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EGLN2	NM_053046	exon2	c.C652T	p.R218C	GGTGGGCGCCTGC	.	125.0	63.0	118.0	0.0	.	31	.	C|1.000;T|0.000	Atlas-SNP
GSK3A	2931	hgsc.bcm.edu	hg19	19	42744195	42744195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GSK3A	NM_019884	exon2	c.G383A	p.G128D	AATGAGCCATTGC	.	111.0	12.0	129.0	0.0	.	45	.	.	Atlas-SNP
CNFN	84518	hgsc.bcm.edu	hg19	19	42893103	42893103	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CNFN	NM_032488	exon2	c.G87A	p.T29T	GCAGTCCGTGAGA	.	39.0	19.0	39.0	0.0	.	5	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44739561	44739561	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ZNF227,NS,carcinoma,0,1	ZNF227	NM_182490	exon6	c.C978T	p.C326C	TAGATGCGACAGT	.	57.0	27.0	77.0	0.0	.	62	.	.	Atlas-SNP
ZNF235	9310	hgsc.bcm.edu	hg19	19	44791785	44791785	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF235	NM_004234	exon5	c.T1803C	p.C601C	TGCATCACACTTG	.	159.0	74.0	161.0	0.0	.	60	.	.	Atlas-SNP
PVR	5817	hgsc.bcm.edu	hg19	19	45162189	45162189	+	Missense_Mutation	SNP	C	C	T	rs35385129	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PVR	NM_001135770	exon6	c.C1171T	p.R391C	AGCTGCCGTAATT	.	68.0	31.0	64.0	0.0	.	23	.	C|0.834;A|0.166	Atlas-SNP
APOE	348	hgsc.bcm.edu	hg19	19	45411140	45411140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	APOE	NM_000041	exon3	c.G167A	p.R56H	ACCTGCGCTGGGT	.	107.0	46.0	106.0	0.0	.	11	.	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48202008	48202008	+	Silent	SNP	C	C	T	rs371897707		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GLTSCR1	NM_015711	exon12	c.C3366T	p.G1122G	CCAGGGCGCCCTC	.	47.0	22.0	67.0	0.0	.	79	.	.	Atlas-SNP
CA11	770	hgsc.bcm.edu	hg19	19	49148722	49148722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CA11	NM_001217	exon2	c.C80T	p.P27L	GGTGCTGGTCCGA	.	88.0	31.0	82.0	0.0	.	29	.	.	Atlas-SNP
FUT1	2523	hgsc.bcm.edu	hg19	19	49254381	49254381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FUT1	NM_000148	exon4	c.C158A	p.A53D	AAGATGGCCACTG	.	113.0	43.0	142.0	0.0	.	44	.	.	Atlas-SNP
ALDH16A1	126133	hgsc.bcm.edu	hg19	19	49965147	49965147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ALDH16A1,colon,carcinoma,0,1	ALDH16A1	NM_153329	exon7	c.C766T	p.R256C	GAAGGGCGTGCCC	.	149.0	67.0	137.0	0.0	.	54	.	.	Atlas-SNP
TBC1D17	79735	hgsc.bcm.edu	hg19	19	50391714	50391714	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TBC1D17	NM_024682	exon17	c.C1780T	p.L594L	CTGGGGCTGGCCC	.	81.0	11.0	99.0	0.0	.	39	.	.	Atlas-SNP
ZNF473	25888	hgsc.bcm.edu	hg19	19	50542425	50542425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF473	NM_015428	exon3	c.T17C	p.V6A	AATTTGTGACCCT	.	76.0	28.0	103.0	0.0	.	86	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50794187	50794187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	MYH14_ENST00000262269,colon,carcinoma,0,1	MYH14	NM_001145809	exon36	c.G5009A	p.R1670H	AGCAGCGCACTCT	.	137.0	54.0	117.0	0.0	.	261	.	.	Atlas-SNP
KLK10	5655	hgsc.bcm.edu	hg19	19	51520382	51520382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KLK10	NM_145888	exon3	c.G253A	p.A85T	AGTGCGCGGCCGT	.	149.0	64.0	117.0	0.0	.	32	.	.	Atlas-SNP
VSIG10L	147645	hgsc.bcm.edu	hg19	19	51840531	51840531	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VSIG10L	NM_001163922	exon7	c.C2266T	p.Q756X	CTGGCTGGCCCCC	.	129.0	52.0	128.0	0.0	.	40	.	.	Atlas-SNP
SIGLEC6	946	hgsc.bcm.edu	hg19	19	52034864	52034864	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIGLEC6	NM_001177549	exon1	c.A39G	p.L13L	CAGCGGTAGCATC	.	188.0	62.0	213.0	0.0	.	142	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52569919	52569919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF841	NM_001136499	exon7	c.T1216C	p.C406R	TGCCACATTCATT	.	112.0	50.0	96.0	0.0	.	183	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53014578	53014578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001099694	exon6	c.A944G	p.Y315C	AACCTTACAAGTG	.	177.0	71.0	160.0	0.0	.	.	.	.	Atlas-SNP
LILRB3	11025	hgsc.bcm.edu	hg19	19	54721271	54721271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LILRB3	NM_001081450	exon12	c.G1669A	p.A557T	GAGAGGCCATTTC	.	217.0	52.0	235.0	0.0	.	67	.	.	Atlas-SNP
LENG8	114823	hgsc.bcm.edu	hg19	19	54967527	54967527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LENG8	NM_052925	exon10	c.G1328A	p.S443N	CCGACAGCTCCTA	.	60.0	26.0	62.0	0.0	.	73	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55591068	55591068	+	Missense_Mutation	SNP	C	C	T	rs373089208		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPS8L1	NM_133180	exon5	c.C128T	p.T43M	TGGTGACGTTCTG	.	94.0	30.0	110.0	0.0	.	122	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55693151	55693151	+	Missense_Mutation	SNP	C	C	T	rs201369294		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTPRH	NM_002842	exon20	c.G3319A	p.A1107T	GGATGGCGGCCAC	.	95.0	40.0	116.0	0.0	.	139	.	C|0.999;T|0.001	Atlas-SNP
RPL28	6158	hgsc.bcm.edu	hg19	19	55899324	55899324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RPL28	NM_000991	exon4	c.G232A	p.V78M	TCCTATGTGCGGA	.	80.0	33.0	89.0	0.0	.	31	.	.	Atlas-SNP
ZNF628	89887	hgsc.bcm.edu	hg19	19	55992668	55992668	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF628	NM_033113	exon3	c.C108T	p.Y36Y	CCAGTACGAATGT	.	148.0	56.0	129.0	0.0	.	75	.	.	Atlas-SNP
U2AF2	11338	hgsc.bcm.edu	hg19	19	56185355	56185355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	U2AF2,bile_duct,carcinoma,0,1	U2AF2	NM_007279	exon12	c.C1349T	p.T450M	GCCTGACGGGCCG	.	99.0	37.0	117.0	0.0	.	62	.	.	Atlas-SNP
ZNF835	90485	hgsc.bcm.edu	hg19	19	57175770	57175770	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF835	NM_001005850	exon2	c.T797A	p.I266N	TGGCGGATGAGCG	.	123.0	51.0	128.0	0.0	.	106	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58384994	58384994	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF814	NM_001144989	exon3	c.C1764T	p.I588I	GTGCCCGATTGAA	.	102.0	47.0	122.0	0.0	.	93	.	.	Atlas-SNP
ZNF544	27300	hgsc.bcm.edu	hg19	19	58773536	58773536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF544	NM_014480	exon7	c.T1564C	p.C522R	TATGAGTGCAACC	.	158.0	59.0	165.0	0.0	.	57	.	.	Atlas-SNP
SLC27A5	10998	hgsc.bcm.edu	hg19	19	59011917	59011917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC27A5	NM_012254	exon5	c.C1339T	p.R447C	CGCAGCGCCCCAC	.	56.0	18.0	65.0	0.0	.	58	.	.	Atlas-SNP
TRIM28	10155	hgsc.bcm.edu	hg19	19	59059077	59059077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIM28	NM_005762	exon5	c.G836A	p.S279N	TTCGCAGCTCGTA	.	125.0	39.0	165.0	0.0	.	46	.	.	Atlas-SNP
NOP56	10528	hgsc.bcm.edu	hg19	20	2635511	2635511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NOP56	NM_006392	exon5	c.C487T	p.R163W	GTGAACCGGGTGG	.	95.0	29.0	102.0	0.0	.	73	.	.	Atlas-SNP
UBOX5	22888	hgsc.bcm.edu	hg19	20	3102753	3102753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UBOX5	NM_014948	exon3	c.A532G	p.T178A	CATGGGTGATACA	.	99.0	42.0	110.0	0.0	.	47	.	.	Atlas-SNP
ATRN	8455	hgsc.bcm.edu	hg19	20	3556555	3556555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATRN	NM_139321	exon13	c.A2174C	p.D725A	GCAATGACCATTG	.	67.0	26.0	66.0	0.0	.	118	.	.	Atlas-SNP
ATRN	8455	hgsc.bcm.edu	hg19	20	3575207	3575207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATRN	NM_139321	exon20	c.A3404G	p.D1135G	AGGGGGACGAGTG	.	145.0	41.0	146.0	0.0	.	118	.	.	Atlas-SNP
BMP2	650	hgsc.bcm.edu	hg19	20	6759209	6759209	+	Missense_Mutation	SNP	G	G	A	rs140884062		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	BMP2,caecum,carcinoma,0,1	BMP2	NM_001200	exon3	c.G664A	p.A222T	GGACACGCCAACC	.	116.0	5.0	133.0	1.0	.	45	.	G|1.000;A|0.000	Atlas-SNP
JAG1	182	hgsc.bcm.edu	hg19	20	10620156	10620156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	JAG1	NM_000214	exon26	c.A3647G	p.Y1216C	ACGATGTACTCCA	.	120.0	46.0	128.0	0.0	.	213	.	.	Atlas-SNP
FLRT3	23767	hgsc.bcm.edu	hg19	20	14307168	14307168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FLRT3	NM_013281	exon2	c.G985A	p.V329M	CACGCACGTTGAC	.	210.0	77.0	221.0	0.0	.	67	.	.	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	hg19	20	18365673	18365673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DZANK1,caecum,carcinoma,0,4	DZANK1	NM_001099407	exon20	c.G2080A	p.A694T	AAGTGGCGGTGCT	.	88.0	29.0	100.0	0.0	.	65	.	.	Atlas-SNP
C20orf78	100128496	hgsc.bcm.edu	hg19	20	18805926	18805926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C20orf78	NM_001242671	exon2	c.A100G	p.K34E	GGCTCTTGTGGGA	.	79.0	26.0	94.0	0.0	.	2	.	.	Atlas-SNP
PAX1	5075	hgsc.bcm.edu	hg19	20	21687178	21687178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PAX1	NM_006192	exon2	c.G389A	p.G130D	AGCTGGGCATCCG	.	86.0	27.0	72.0	0.0	.	152	.	.	Atlas-SNP
NANP	140838	hgsc.bcm.edu	hg19	20	25604493	25604493	+	Splice_Site	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NANP	NM_152667	exon2	c.90+2T>A	.	GACGTTACCTCCA	.	143.0	47.0	155.0	0.0	.	10	.	.	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	hg19	20	31671633	31671633	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_182519	exon3	c.C630T	p.G210G	CCTGGGCGTGCTC	.	87.0	28.0	88.0	0.0	.	.	.	.	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	hg19	20	33588879	33588879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYH7B	NM_020884	exon41	c.G5519A	p.R1840H	CGGTGCGCGAGCT	.	243.0	100.0	201.0	0.0	.	145	.	.	Atlas-SNP
EDEM2	55741	hgsc.bcm.edu	hg19	20	33719574	33719574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EDEM2	NM_018217	exon7	c.A715G	p.I239V	CATCAATGTGGTT	.	102.0	32.0	111.0	0.0	.	46	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34090970	34090970	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CEP250	NM_007186	exon30	c.C4773T	p.T1591T	TTTGACCCACCTT	.	128.0	51.0	124.0	0.0	.	141	.	.	Atlas-SNP
RALGAPB	57148	hgsc.bcm.edu	hg19	20	37182643	37182643	+	Missense_Mutation	SNP	C	C	T	rs138852733	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RALGAPB	NM_020336	exon22	c.C3296T	p.P1099L	AGCCCCCGCCTCC	.	208.0	47.0	176.0	0.0	.	134	.	C|1.000;A|0.000	Atlas-SNP
PPP1R16B	26051	hgsc.bcm.edu	hg19	20	37536807	37536807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPP1R16B	NM_015568	exon10	c.A1165T	p.T389S	AGGGAGACCAGGA	.	338.0	126.0	373.0	0.0	.	103	.	.	Atlas-SNP
SPINT3	10816	hgsc.bcm.edu	hg19	20	44141453	44141453	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPINT3	NM_006652	exon2	c.C108T	p.C36C	AAAAGCGCATACA	.	58.0	19.0	84.0	0.0	.	12	.	.	Atlas-SNP
SNX21	90203	hgsc.bcm.edu	hg19	20	44469566	44469566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SNX21	NM_033421	exon4	c.C736T	p.R246W	CTGCGGCGGGCAC	.	73.0	39.0	84.0	0.0	.	23	.	.	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44596429	44596429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ZNF335,colon,carcinoma,0,1	ZNF335	NM_022095	exon5	c.G758A	p.R253Q	CTGCTCCGGTACT	.	57.0	28.0	56.0	0.0	.	115	.	.	Atlas-SNP
CD40	958	hgsc.bcm.edu	hg19	20	44750964	44750964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CD40	NM_152854	exon3	c.A223G	p.T75A	AGAGAGACACACT	.	102.0	39.0	119.0	0.0	.	33	.	.	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	hg19	20	46307534	46307534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SULF2	NM_001161841	exon8	c.T1079C	p.V360A	TTGAGGACGATGT	.	56.0	29.0	34.0	0.0	.	131	.	.	Atlas-SNP
PTGIS	5740	hgsc.bcm.edu	hg19	20	48156217	48156217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	PTGIS,NS,carcinoma,0,1	PTGIS	NM_000961	exon5	c.G563A	p.R188H	TGGGTGCGTGGCA	.	49.0	20.0	41.0	0.0	.	60	.	.	Atlas-SNP
KCNG1	3755	hgsc.bcm.edu	hg19	20	49626762	49626762	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCNG1	NM_002237	exon2	c.G114A	p.A38A	GTAGAACGCGCCC	.	30.0	9.0	40.0	0.0	.	86	.	.	Atlas-SNP
SALL4	57167	hgsc.bcm.edu	hg19	20	50408386	50408386	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SALL4	NM_020436	exon2	c.G636A	p.P212P	GACCCACGGGATG	.	51.0	29.0	42.0	0.0	.	168	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52192757	52192757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF217	NM_006526	exon3	c.C2546T	p.P849L	GGTGCAGGGGAAA	.	65.0	33.0	87.0	0.0	.	227	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52198883	52198883	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	ZNF217_ENST00000371471,colon,carcinoma,0,2	ZNF217	NM_006526	exon1	c.C483T	p.C161C	TCTTCCGCACATG	.	79.0	34.0	94.0	0.0	.	227	.	.	Atlas-SNP
CSTF1	1477	hgsc.bcm.edu	hg19	20	54978541	54978541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CSTF1,NS,carcinoma,0,1	CSTF1	NM_001033522	exon6	c.C1054T	p.R352C	AGTGGACGCCAGG	.	102.0	42.0	103.0	0.0	.	29	.	.	Atlas-SNP
STX16	8675	hgsc.bcm.edu	hg19	20	57242608	57242608	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	STX16	NM_001001433	exon3	c.T207C	p.G69G	GATTGGTGTGACA	.	146.0	70.0	121.0	0.0	.	36	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60887270	60887270	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LAMA5	NM_005560	exon69	c.A9463C	p.S3155R	GGGCGCTGTGGAA	.	175.0	72.0	231.0	0.0	.	268	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61527589	61527589	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DIDO1	NM_080797	exon8	c.A2210T	p.N737I	ACCTGATTTTTAG	.	128.0	47.0	117.0	0.0	.	321	.	.	Atlas-SNP
SLC17A9	63910	hgsc.bcm.edu	hg19	20	61588143	61588143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC17A9	NM_022082	exon2	c.C86T	p.T29M	CGGGGACGCTGCT	.	54.0	21.0	65.0	0.0	.	54	.	.	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	hg19	20	61834090	61834090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	YTHDF1	NM_017798	exon4	c.A1202G	p.D401G	TGGATGTCGTCCT	.	106.0	39.0	91.0	0.0	.	66	.	.	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62198473	62198473	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001037335	exon7	c.G2238A	p.T746T	GGCGTCCGTGCAG	.	51.0	4.0	79.0	0.0	.	.	.	.	Atlas-SNP
URB1	9875	hgsc.bcm.edu	hg19	21	33687279	33687279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	URB1	NM_014825	exon39	c.G6766A	p.A2256T	CGATGGCCTCCTC	.	155.0	63.0	175.0	0.0	.	176	.	.	Atlas-SNP
TCP10L	140290	hgsc.bcm.edu	hg19	21	33951121	33951121	+	Silent	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TCP10L	NM_144659	exon4	c.A381T	p.G127G	AATTTTTCCAAAA	.	223.0	80.0	242.0	0.0	.	24	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37600040	37600040	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DOPEY2	NM_005128	exon13	c.G1530A	p.V510V	CCTGGTGCAGCCT	.	49.0	19.0	81.0	0.0	.	184	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37603120	37603120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DOPEY2	NM_005128	exon14	c.A2038G	p.N680D	AGGAAGAACTCTT	.	138.0	66.0	131.0	0.0	.	184	.	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46910776	46910776	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL18A1	NM_030582	exon20	c.G2598A	p.R866R	CAGCCGGGGAGAA	.	169.0	83.0	142.0	0.0	.	129	.	.	Atlas-SNP
COL6A1	1291	hgsc.bcm.edu	hg19	21	47422161	47422161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL6A1	NM_001848	exon32	c.G2096A	p.G699D	TGGCGGGCGGCAC	.	97.0	21.0	90.0	0.0	.	101	.	.	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47551948	47551948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL6A2	NM_001849	exon28	c.A2542G	p.N848D	GAGCAGAACTTCC	.	112.0	54.0	107.0	0.0	.	351	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47848330	47848330	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCNT	NM_006031	exon35	c.C7516T	p.L2506L	AAGTCCCTGGAGC	.	114.0	48.0	127.0	0.0	.	283	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47848382	47848382	+	Missense_Mutation	SNP	C	C	A	rs368569999	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCNT	NM_006031	exon35	c.C7568A	p.A2523E	TCCAGGCGCTGCG	.	91.0	43.0	107.0	0.0	.	283	.	.	Atlas-SNP
IL17RA	23765	hgsc.bcm.edu	hg19	22	17588634	17588634	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IL17RA	NM_014339	exon12	c.T1063A	p.Y355N	GAAAAATACAGTG	.	86.0	32.0	110.0	0.0	.	62	.	.	Atlas-SNP
SLC25A1	6576	hgsc.bcm.edu	hg19	22	19165655	19165655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC25A1	NM_001256534	exon1	c.C214T	p.R72W	TGCCCCGGTACCG	.	117.0	8.0	132.0	0.0	.	14	.	.	Atlas-SNP
C22orf29	79680	hgsc.bcm.edu	hg19	22	19839777	19839777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C22orf29	NM_024627	exon3	c.G8A	p.R3H	CGGCCACGAGGCA	.	144.0	52.0	155.0	0.0	.	23	.	.	Atlas-SNP
RTN4R	65078	hgsc.bcm.edu	hg19	22	20229291	20229291	+	Silent	SNP	G	G	A	rs374126911		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RTN4R	NM_023004	exon2	c.C1365T	p.C455C	GAGGCTGCAGGTG	.	139.0	57.0	136.0	0.0	.	14	.	.	Atlas-SNP
RIMBP3	85376	hgsc.bcm.edu	hg19	22	20458139	20458139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RIMBP3	NM_015672	exon1	c.C3163T	p.R1055W	CCACCCGCGCCCG	.	1049.0	170.0	1061.0	0.0	.	42	.	.	Atlas-SNP
GNAZ	2781	hgsc.bcm.edu	hg19	22	23438309	23438309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GNAZ	NM_002073	exon2	c.C427T	p.R143C	TTCAGCCGCTCCA	.	42.0	8.0	74.0	0.0	.	45	.	.	Atlas-SNP
SLC2A11	66035	hgsc.bcm.edu	hg19	22	24219966	24219966	+	Missense_Mutation	SNP	G	G	A	rs144951215		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC2A11	NM_030807	exon7	c.G616A	p.G206R	GTGCCCGGGGCGC	.	106.0	38.0	126.0	0.0	.	32	.	G|1.000;A|0.000	Atlas-SNP
GGT5	2687	hgsc.bcm.edu	hg19	22	24628858	24628858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GGT5	NM_001099781	exon4	c.G529A	p.A177T	CAGGGGCCACCAC	.	220.0	72.0	256.0	0.0	.	61	.	.	Atlas-SNP
ADRBK2	157	hgsc.bcm.edu	hg19	22	26100174	26100174	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ADRBK2	NM_005160	exon15	c.C1326T	p.G442G	CGGAGGCGGGTAG	.	134.0	58.0	166.0	0.0	.	78	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26306993	26306993	+	Silent	SNP	C	C	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MYO18B	NM_032608	exon33	c.C5340A	p.G1780G	GGAAGGCTTGATC	.	100.0	29.0	104.0	0.0	.	322	.	.	Atlas-SNP
GAS2L1	10634	hgsc.bcm.edu	hg19	22	29706652	29706652	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GAS2L1	NM_152237	exon4	c.C766T	p.R256X	ATGGTGCGAGTGG	.	47.0	24.0	63.0	0.0	.	54	.	.	Atlas-SNP
SEC14L6	730005	hgsc.bcm.edu	hg19	22	30928661	30928661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SEC14L6	NM_001193336	exon5	c.G274A	p.D92N	CACCGTCGTGGCC	.	111.0	42.0	112.0	0.0	.	6	.	.	Atlas-SNP
SLC35E4	339665	hgsc.bcm.edu	hg19	22	31042723	31042723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC35E4	NM_001001479	exon2	c.G758A	p.R253H	ACTCTCGCCTCTG	.	59.0	29.0	61.0	0.0	.	22	.	.	Atlas-SNP
DUSP18	150290	hgsc.bcm.edu	hg19	22	31059555	31059555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DUSP18,NS,carcinoma,0,1	DUSP18	NM_152511	exon2	c.G436A	p.G146S	AAAAGCCGCTGTT	.	108.0	41.0	102.0	1.0	.	10	.	.	Atlas-SNP
SMTN	6525	hgsc.bcm.edu	hg19	22	31484696	31484696	+	Silent	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SMTN	NM_001207018	exon4	c.T474C	p.A158A	AAGCGCTGGTGAG	.	154.0	13.0	172.0	0.0	.	219	.	.	Atlas-SNP
RFPL2	10739	hgsc.bcm.edu	hg19	22	32586994	32586994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RFPL2	NM_001098527	exon5	c.G902A	p.R301H	AACTTGCGGTCTA	.	218.0	108.0	234.0	0.0	.	81	.	.	Atlas-SNP
GGA1	26088	hgsc.bcm.edu	hg19	22	38016853	38016853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GGA1	NM_001001560	exon6	c.A461G	p.D154G	CAGATGACACTAC	.	110.0	37.0	118.0	0.0	.	39	.	.	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	hg19	22	38315101	38315101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MICALL1	NM_033386	exon5	c.G485A	p.S162N	CCAGCAGCACGTG	.	101.0	47.0	96.0	0.0	.	53	.	.	Atlas-SNP
PICK1	9463	hgsc.bcm.edu	hg19	22	38470413	38470413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PICK1	NM_012407	exon12	c.C934T	p.R312C	CAGATGCGCAAGG	.	191.0	42.0	200.0	0.0	.	30	.	.	Atlas-SNP
CBX6	23466	hgsc.bcm.edu	hg19	22	39262901	39262901	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CBX6	NM_014292	exon5	c.C552T	p.G184G	GCCAGCGCCCTTG	.	73.0	17.0	86.0	0.0	.	26	.	.	Atlas-SNP
SMCR7L	54471	hgsc.bcm.edu	hg19	22	39908399	39908399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SMCR7L	NM_019008	exon5	c.T485C	p.V162A	CTGCTGTGGACAT	.	64.0	23.0	58.0	0.0	.	33	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	44067890	44067890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EFCAB6	NM_022785	exon15	c.G1603A	p.V535I	AGAAGACGTGCAT	.	156.0	58.0	174.0	0.0	.	177	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46829297	46829297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CELSR1	NM_014246	exon5	c.A4604G	p.Y1535C	TTGTTGTAGTACT	.	42.0	11.0	51.0	0.0	.	242	.	.	Atlas-SNP
PLCXD1	55344	hgsc.bcm.edu	hg19	X	209880	209880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PLCXD1	NM_018390	exon6	c.G728A	p.R243H	GCGGCCGCCCAGG	.	181.0	38.0	208.0	0.0	.	18	.	.	Atlas-SNP
CSF2RA	1438	hgsc.bcm.edu	hg19	X	1424529	1424529	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CSF2RA	NM_001161531	exon13	c.G1134A	p.P378P	GGGACCGCAGCGT	.	576.0	250.0	600.0	0.0	.	153	.	.	Atlas-SNP
SHROOM2	357	hgsc.bcm.edu	hg19	X	9866241	9866241	+	Silent	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SHROOM2	NM_001649	exon5	c.C2802T	p.V934V	TTCTGTCGAACTG	.	244.0	137.0	268.0	0.0	.	139	.	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765564	27765564	+	Silent	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DCAF8L2	NM_001136533	exon1	c.A552G	p.R184R	GCCCCGACCTCGC	.	109.0	87.0	136.0	1.0	.	79	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31496268	31496268	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DMD	NM_004006	exon59	c.C8892T	p.G2964G	GAGATCGCCCACG	.	48.0	35.0	56.0	0.0	.	2127	.	.	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	hg19	X	49127168	49127168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPP1R3F	NM_033215	exon1	c.G836A	p.R279H	ACGGCCGCAACTA	.	83.0	66.0	78.0	0.0	.	56	.	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54321142	54321142	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WNK3	NM_001002838	exon8	c.T1537A	p.S513T	CCATAGACTTGCA	.	49.0	46.0	42.0	0.0	.	218	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73963111	73963111	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KIAA2022	NM_001008537	exon3	c.C1281T	p.G427G	AAGATGGCCCTGC	.	47.0	39.0	44.0	0.0	.	262	.	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	hg19	X	76920179	76920179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATRX	NM_000489	exon11	c.A3898G	p.K1300E	TTTTTTTCCCTTC	.	34.0	25.0	58.0	0.0	.	833	.	.	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	hg19	X	79965042	79965042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BRWD3	NM_153252	exon21	c.G2360A	p.R787H	GTCCTGCGTAAAG	.	87.0	64.0	72.0	0.0	.	251	.	.	Atlas-SNP
KLHL4	56062	hgsc.bcm.edu	hg19	X	86877225	86877225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KLHL4	NM_019117	exon5	c.G939T	p.E313D	CATTGAGGTAATA	.	247.0	172.0	273.0	0.0	.	263	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91873881	91873881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDH11X	NM_032968	exon7	c.G3986A	p.R1329H	CTCCACGCCAACA	.	199.0	24.0	225.0	0.0	.	714	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108691376	108691376	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GUCY2F	NM_001522	exon6	c.C1491T	p.I497I	CAACTGGATTTTA	.	73.0	63.0	76.0	0.0	.	178	.	.	Atlas-SNP
NXT2	55916	hgsc.bcm.edu	hg19	X	108779154	108779154	+	Nonsense_Mutation	SNP	G	G	T	rs142540133	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NXT2	NM_018698	exon1	c.G43T	p.G15X	AGAGAAGGATACC	.	394.0	31.0	373.0	0.0	.	16	.	G|1.000;C|0.000	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	hg19	X	112033910	112033910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AMOT	NM_001113490	exon7	c.C2027A	p.A676D	ATATCAGCTTCCA	.	98.0	73.0	108.0	0.0	.	204	.	.	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	hg19	X	129185838	129185838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BCORL1	NM_021946	exon11	c.A4700G	p.E1567G	CAGAGGAAAAAGA	.	102.0	91.0	91.0	0.0	.	213	.	.	Atlas-SNP
PNMA5	114824	hgsc.bcm.edu	hg19	X	152158844	152158844	+	Silent	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PNMA5	NM_001103150	exon2	c.C1299T	p.N433N	TGCCTCGTTTCCC	.	70.0	51.0	61.0	0.0	.	63	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153138119	153138119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	L1CAM	NM_000425	exon3	c.C125T	p.P42L	CGCCGTGGAGACT	.	101.0	73.0	115.0	0.0	.	189	.	.	Atlas-SNP
MECP2	4204	hgsc.bcm.edu	hg19	X	153296806	153296806	+	Missense_Mutation	SNP	G	G	A	rs28934906	bycluster	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MECP2	NM_001110792	exon3	c.C509T	p.T170M	GTTACCGTGAAGT	.	79.0	68.0	98.0	0.0	.	41	.	G|1.000;|0.000	Atlas-SNP
FLNA	2316	hgsc.bcm.edu	hg19	X	153599342	153599342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FLNA	NM_001456	exon2	c.G272A	p.R91H	TGCTTGCGGTGCA	.	86.0	4.0	87.0	0.0	.	373	.	.	Atlas-SNP
SPRY3	10251	hgsc.bcm.edu	hg19	X	155004148	155004148	+	Silent	SNP	C	C	T	rs368582313		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SPRY3	NM_005840	exon2	c.C615T	p.N205N	AGACAACTGTGCT	.	154.0	57.0	154.0	0.0	.	52	.	.	Atlas-SNP
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	5369160	5369160	+	Silent	SNP	A	A	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDH11Y	NM_032973	exon3	c.A3192T	p.G1064G	TGGTGGACTGGGA	.	411.0	288.0	413.0	2.0	.	163	.	.	Atlas-SNP
DDX3Y	8653	hgsc.bcm.edu	hg19	Y	15026814	15026814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DDX3Y	NM_004660	exon9	c.C778T	p.R260C	TATGGGCGCCGCA	.	148.0	121.0	179.0	0.0	.	13	.	.	Atlas-SNP
NLGN4Y	22829	hgsc.bcm.edu	hg19	Y	16942179	16942179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NLGN4Y	NM_014893	exon5	c.G1381A	p.A461T	CTGCACGCGCAGT	.	197.0	163.0	247.0	0.0	.	44	.	.	Atlas-SNP
DIRAS1	148252	hgsc.bcm.edu	hg19	19	2717762	2717762	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DIRAS1,NS,carcinoma,0,1	DIRAS1	NM_145173	exon2	c.44delC	p.A15fs	.	.	23.0	17.0	46.0	0.0	.	26	.	.	Atlas-Indel,Pindel
KAT6B	23522	hgsc.bcm.edu	hg19	10	76784946	76784949	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	ACAA	ACAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_012330	exon17	c.3602_3605del	p.1201_1202del	.	.	211.0	73.0	272.0	0.0	.	.	.	.	Atlas-Indel,Pindel
KCNK17	89822	hgsc.bcm.edu	hg19	6	39272281	39272281	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCNK17	NM_001135111	exon3	c.504delC	p.G168fs	.	.	233.0	47.0	148.0	0.0	.	61	.	.	Atlas-Indel,Pindel
SLC26A7	115111	hgsc.bcm.edu	hg19	8	92352747	92352747	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLC26A7	NM_052832	exon8	c.993delC	p.A331fs	.	.	80.0	33.0	77.0	0.0	.	207	.	.	Atlas-Indel,Pindel
SCAP	22937	hgsc.bcm.edu	hg19	3	47455478	47455481	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SCAP	NM_012235	exon23	c.3704_3707del	p.1235_1236del	.	.	90.0	36.0	77.0	0.0	.	88	.	.	Atlas-Indel,Pindel
NAIP	4671	hgsc.bcm.edu	hg19	5	70280772	70280772	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAIP	NM_004536	exon12	c.2105delC	p.S702fs	.	.	214.0	22.0	248.0	0.0	.	38	.	.	Atlas-INDEL
MLL4	8085	hgsc.bcm.edu	hg19	19	36223002	36223002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MLL4	NM_014727	exon27	c.5630delT	p.L1877fs	.	.	66.0	27.0	90.0	0.0	.	229	.	.	Atlas-Indel,Pindel
PADI1	29943	hgsc.bcm.edu	hg19	1	17555492	17555492	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PADI1	NM_013358	exon8	c.874delG	p.A292fs	.	.	52.0	23.0	56.0	0.0	.	77	.	.	Atlas-Indel,Pindel
AGBL2	79841	hgsc.bcm.edu	hg19	11	47701557	47701557	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AGBL2	NM_024783	exon13	c.1985delT	p.L662fs	.	.	109.0	45.0	140.0	0.0	.	73	.	.	Atlas-Indel,Pindel
RIMBP3C	150221	hgsc.bcm.edu	hg19	22	21902792	21902792	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RIMBP3C	NM_001128633	exon1	c.2475delC	p.G825fs	.	.	169.0	17.0	174.0	0.0	.	6	.	.	Atlas-INDEL
DHRS4L2	317749	hgsc.bcm.edu	hg19	14	24470144	24470144	+	Splice_Site	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DHRS4L2	NM_001193636	exon4	c.176+1T>-	.	.	.	577.0	209.0	555.0	0.0	.	29	.	.	Atlas-Indel,Pindel
EPHA3	2042	hgsc.bcm.edu	hg19	3	89499362	89499363	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EPHA3	NM_005233	exon15	c.2532_2533insC	p.P844fs	.	.	272.0	112.0	226.0	0.0	.	501	.	.	Atlas-Indel,Pindel
LRRC37A3	374819	hgsc.bcm.edu	hg19	17	62882287	62882288	+	Splice_Site	DEL	AA	AA	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRRC37A3	.	.	.	.	.	.	234.0	22.0	264.0	0.0	.	75	.	.	Atlas-INDEL
OR5D18	219438	hgsc.bcm.edu	hg19	11	55587264	55587264	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR5D18	NM_001001952	exon1	c.158delA	p.N53fs	.	.	143.0	32.0	112.0	0.0	.	121	.	.	Atlas-Indel,Pindel
LRRC72	100506049	hgsc.bcm.edu	hg19	7	16577286	16577286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001195280	exon3	c.198delT	p.F66fs	.	.	927.0	273.0	616.0	0.0	.	.	.	.	Atlas-Indel,Pindel
FOXK2	3607	hgsc.bcm.edu	hg19	17	80521292	80521293	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FOXK2	NM_004514	exon2	c.481_482del	p.161_161del	.	.	73.0	45.0	140.0	0.0	.	46	.	.	Atlas-Indel,Pindel
COL1A2	1278	hgsc.bcm.edu	hg19	7	94052290	94052290	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL1A2	NM_000089	exon40	c.2424delT	p.G808fs	.	.	178.0	11.0	169.0	0.0	.	240	.	.	Atlas-INDEL
SORCS3	22986	hgsc.bcm.edu	hg19	10	106401491	106401491	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SORCS3	NM_014978	exon1	c.405delG	p.Q135fs	.	.	72.0	30.0	68.0	0.0	.	282	.	.	Atlas-Indel,Pindel
MARCH4	57574	hgsc.bcm.edu	hg19	2	217124185	217124186	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MARCH4	NM_020814	exon4	c.1083_1084insC	p.P361fs	.	.	89.0	31.0	113.0	0.0	.	50	.	.	Atlas-Indel,Pindel
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38852951	38852951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DYRK1A	NM_001396	exon4	c.338delC	p.A113fs	.	.	225.0	70.0	216.0	0.0	.	85	.	.	Atlas-Indel,Pindel
GPC2	221914	hgsc.bcm.edu	hg19	7	99769524	99769525	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPC2	NM_152742	exon7	c.1048_1049insC	p.D350fs	.	.	59.0	19.0	71.0	0.0	.	49	.	.	Atlas-Indel,Pindel
BHLHE41	79365	hgsc.bcm.edu	hg19	12	26275589	26275590	+	In_Frame_Ins	INS	-	-	GCT	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	BHLHE41	NM_030762	exon5	c.859_860insAGC	p.G287delinsSG	.	.	26.0	10.0	46.0	0.0	.	20	.	.	Atlas-INDEL
RPN2	6185	hgsc.bcm.edu	hg19	20	35860726	35860726	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RPN2	NM_002951	exon14	c.1608delG	p.R536fs	.	.	81.0	33.0	72.0	0.0	.	45	.	.	Atlas-Indel,Pindel
SSH2	85464	hgsc.bcm.edu	hg19	17	27959374	27959375	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SSH2	NM_033389	exon15	c.2757_2758insC	p.P919fs	.	.	70.0	22.0	63.0	0.0	.	107	.	.	Atlas-Indel,Pindel
PIGZ	80235	hgsc.bcm.edu	hg19	3	196674301	196674301	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PIGZ	NM_025163	exon3	c.1468delA	p.T490fs	.	.	56.0	17.0	64.0	0.0	.	34	.	.	Atlas-Indel,Pindel
ATF4	468	hgsc.bcm.edu	hg19	22	39918267	39918267	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATF4	NM_182810	exon3	c.715delA	p.R239fs	.	.	348.0	136.0	411.0	0.0	.	27	.	.	Atlas-Indel,Pindel
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89348566	89348568	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANKRD11	NM_001256182	exon10	c.4383_4385del	p.1461_1462del	.	.	63.0	29.0	70.0	0.0	.	195	.	.	Atlas-Indel,Pindel
UBA2	10054	hgsc.bcm.edu	hg19	19	34949675	34949675	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UBA2	NM_005499	exon13	c.1246delA	p.I416fs	.	.	142.0	12.0	170.0	0.0	.	53	.	.	Atlas-Indel,Pindel
CNGB1	1258	hgsc.bcm.edu	hg19	16	57918254	57918254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CNGB1	NM_001297	exon33	c.3571delG	p.E1191fs	.	.	75.0	27.0	73.0	0.0	.	105	.	.	Atlas-Indel,Pindel
RIMBP3C	150221	hgsc.bcm.edu	hg19	22	21740616	21740616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RIMBP3C	NM_001128633	exon1	c.2468delT	p.M823fs	.	.	159.0	19.0	200.0	0.0	.	6	.	.	Atlas-INDEL
CSN1S1	1446	hgsc.bcm.edu	hg19	4	70810695	70810695	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CSN1S1	NM_001890	exon15	c.529delG	p.E177fs	.	.	154.0	68.0	141.0	0.0	.	20	.	.	Atlas-Indel,Pindel
PML	5371	hgsc.bcm.edu	hg19	15	74337203	74337203	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PML	NM_033238	exon9	c.2502delG	p.L834fs	.	.	82.0	28.0	75.0	0.0	.	169	.	.	Atlas-Indel,Pindel
RSF1	51773	hgsc.bcm.edu	hg19	11	77411876	77411876	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RSF1	NM_016578	exon6	c.2399delG	p.R800fs	.	.	36.0	14.0	40.0	0.0	.	105	.	.	Atlas-Indel,Pindel
DNAH10	196385	hgsc.bcm.edu	hg19	12	124403305	124403305	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAH10	NM_207437	exon64	c.10960delA	p.R3654fs	.	.	97.0	23.0	76.0	0.0	.	888	.	.	Atlas-Indel,Pindel
PPYR1	5540	hgsc.bcm.edu	hg19	10	47087814	47087814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PPYR1	NM_005972	exon3	c.1030delG	p.A344fs	.	.	224.0	25.0	215.0	0.0	.	54	.	.	Atlas-Indel,Pindel
NOVA2	4858	hgsc.bcm.edu	hg19	19	46476610	46476610	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NOVA2	NM_002516	exon1	c.1delA	p.M1fs	.	.	27.0	11.0	36.0	0.0	.	38	.	.	Atlas-INDEL
LY6G6D	58530	hgsc.bcm.edu	hg19	6	31683313	31683313	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LY6G6D	NM_021246	exon2	c.89delG	p.S30fs	.	.	136.0	11.0	110.0	0.0	.	11	.	.	Atlas-INDEL
ARAP1	116985	hgsc.bcm.edu	hg19	11	72437830	72437830	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARAP1	NM_001040118	exon3	c.345delA	p.P115fs	.	.	174.0	59.0	166.0	0.0	.	168	.	.	Atlas-Indel,Pindel
RIC3	79608	hgsc.bcm.edu	hg19	11	8159886	8159887	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RIC3	NM_001206672	exon3	c.360_361insA	p.K120fs	.	.	60.0	26.0	62.0	0.0	.	42	.	.	Atlas-Indel,Pindel
RBBP6	5930	hgsc.bcm.edu	hg19	16	24580479	24580479	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBBP6	NM_006910	exon17	c.2467delG	p.E823fs	.	.	317.0	119.0	336.0	0.0	.	158	.	.	Atlas-Indel,Pindel
CEACAM5	1048	hgsc.bcm.edu	hg19	19	42224866	42224866	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CEACAM5	NM_004363	exon8	c.1795delT	p.S599fs	.	.	176.0	64.0	156.0	0.0	.	84	.	.	Atlas-Indel,Pindel
ZNF500	26048	hgsc.bcm.edu	hg19	16	4802884	4802885	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF500	NM_021646	exon6	c.936_937insC	p.P312fs	.	.	73.0	24.0	52.0	0.0	.	45	.	.	Atlas-Indel,Pindel
USP38	84640	hgsc.bcm.edu	hg19	4	144135967	144135968	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	USP38	NM_032557	exon9	c.2838_2839insA	p.Y946fs	.	.	280.0	107.0	313.0	0.0	.	92	.	.	Atlas-Indel,Pindel
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140857742	140857742	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PCDHGC3	NM_032402	exon1	c.2058delG	p.Q686fs	.	.	82.0	28.0	78.0	0.0	.	173	.	.	Atlas-Indel,Pindel
LAMA5	3911	hgsc.bcm.edu	hg19	20	60885264	60885264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LAMA5	NM_005560	exon77	c.10705delT	p.Y3569fs	.	.	78.0	18.0	74.0	0.0	.	268	.	.	Atlas-Indel,Pindel
PHF10	55274	hgsc.bcm.edu	hg19	6	170123958	170123959	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PHF10	NM_018288	exon1	c.70_71insC	p.G24fs	.	.	29.0	19.0	21.0	0.0	.	76	.	.	Atlas-Indel,Pindel
FBXL7	23194	hgsc.bcm.edu	hg19	5	15928504	15928504	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	FBXL7,right_upper_lobe,carcinoma,0,1	FBXL7	NM_012304	exon3	c.632delG	p.C211fs	.	.	126.0	20.0	124.0	0.0	.	138	.	.	Atlas-Indel,Pindel
LYST	1130	hgsc.bcm.edu	hg19	1	235860518	235860519	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LYST	NM_000081	exon46	c.10429_10430insC	p.S3477fs	.	.	483.0	147.0	469.0	0.0	.	370	.	.	Atlas-Indel,Pindel
DMTF1	9988	hgsc.bcm.edu	hg19	7	86817443	86817444	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DMTF1	NM_001142327	exon13	c.1237_1238insA	p.Q413fs	.	.	168.0	60.0	158.0	0.0	.	48	.	.	Atlas-Indel,Pindel
SPATA31A1	647060	hgsc.bcm.edu	hg19	9	39890593	39890593	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001085452	exon4	c.3579delG	p.V1193fs	.	.	139.0	34.0	119.0	0.0	.	.	.	.	Atlas-INDEL
TRIM15	89870	hgsc.bcm.edu	hg19	6	30139690	30139692	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIM15	NM_033229	exon7	c.961_963del	p.321_321del	.	.	375.0	108.0	275.0	0.0	.	34	.	.	Atlas-Indel,Pindel
RAB42	115273	hgsc.bcm.edu	hg19	1	28920546	28920547	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	RAB42	NM_001193532	exon2	c.574_575insG	p.W192fs	.	.	92.0	31.0	137.0	0.0	.	10	.	.	Atlas-Indel,Pindel
EVC2	132884	hgsc.bcm.edu	hg19	4	5696122	5696122	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	EVC2	NM_147127	exon3	c.391delA	p.I131fs	.	.	398.0	161.0	371.0	0.0	.	202	.	.	Atlas-Indel,Pindel
LZTS3	0	hgsc.bcm.edu	hg19	20	3145661	3145663	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_014731	exon3	c.1460_1462del	p.487_488del	.	.	56.0	18.0	74.0	0.0	.	.	.	.	Atlas-Indel,Pindel
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327684	16327684	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ATXN1	NM_000332	exon8	c.859delT	p.S287fs	.	.	206.0	58.0	174.0	0.0	.	117	.	.	Atlas-Indel,Pindel
NAP1L5	266812	hgsc.bcm.edu	hg19	4	89618583	89618583	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NAP1L5	NM_153757	exon1	c.324delG	p.K108fs	.	.	83.0	31.0	72.0	0.0	.	23	.	.	Atlas-Indel,Pindel
COL1A1	1277	hgsc.bcm.edu	hg19	17	48276626	48276626	+	Frame_Shift_Del	DEL	G	G	-	rs72667016		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL1A1	NM_000088	exon5	c.433delG	p.G145fs	.	.	260.0	54.0	287.0	0.0	.	158	.	.	Atlas-Indel,Pindel
CADM2	253559	hgsc.bcm.edu	hg19	3	85961535	85961536	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CADM2	NM_001167675	exon6	c.542_543insA	p.L181fs	.	.	397.0	145.0	389.0	0.0	.	195	.	.	Atlas-Indel,Pindel
ZC3H14	79882	hgsc.bcm.edu	hg19	14	89039079	89039079	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZC3H14	NM_001160104	exon6	c.588delG	p.Q196fs	.	.	156.0	58.0	176.0	0.0	.	71	.	.	Atlas-Indel,Pindel
POLD1	5424	hgsc.bcm.edu	hg19	19	50905061	50905061	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	POLD1	NM_002691	exon4	c.342delG	p.G114fs	.	.	77.0	28.0	90.0	0.0	.	174	.	.	Atlas-Indel,Pindel
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183952090	183952090	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	VWA5B2	NM_138345	exon5	c.724delG	p.A242fs	.	.	109.0	50.0	100.0	0.0	.	47	.	.	Atlas-Indel,Pindel
NUP214	8021	hgsc.bcm.edu	hg19	9	134073007	134073008	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,3	NUP214	NM_005085	exon29	c.4126_4127insC	p.A1376fs	.	.	157.0	52.0	173.0	0.0	.	166	.	.	Atlas-Indel,Pindel
DCHS2	54798	hgsc.bcm.edu	hg19	4	155158059	155158059	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DCHS2	NM_017639	exon25	c.6381delC	p.N2127fs	.	.	75.0	25.0	93.0	0.0	.	594	.	.	Atlas-Indel,Pindel
SYT2	127833	hgsc.bcm.edu	hg19	1	202568405	202568407	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SYT2	NM_001136504	exon8	c.993_995del	p.331_332del	.	.	122.0	43.0	114.0	0.0	.	51	.	.	Atlas-Indel,Pindel
SIRPB1	10326	hgsc.bcm.edu	hg19	20	1600524	1600524	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIRPB1	NM_001083910	exon1	c.68delG	p.R23fs	.	.	96.0	39.0	99.0	0.0	.	83	.	.	Atlas-Indel,Pindel
SIGLEC5	8778	hgsc.bcm.edu	hg19	19	52133551	52133551	+	Splice_Site	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SIGLEC5	NM_003830	exon2	c.37+2G>-	.	.	.	142.0	28.0	159.0	0.0	.	67	.	.	Atlas-INDEL
RBM27	54439	hgsc.bcm.edu	hg19	5	145609290	145609290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RBM27	NM_018989	exon5	c.405delG	p.E135fs	.	.	114.0	49.0	130.0	0.0	.	119	.	.	Atlas-Indel,Pindel
C1orf127	148345	hgsc.bcm.edu	hg19	1	11007833	11007833	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C1orf127	NM_001170754	exon12	c.2360delC	p.A787fs	.	.	97.0	37.0	87.0	0.0	.	134	.	.	Atlas-Indel,Pindel
APOB	338	hgsc.bcm.edu	hg19	2	21225513	21225514	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	APOB	NM_000384	exon29	c.12781_12782del	p.4261_4261del	.	.	123.0	48.0	138.0	0.0	.	761	.	.	Atlas-Indel,Pindel
IPO7	10527	hgsc.bcm.edu	hg19	11	9435806	9435806	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IPO7	NM_006391	exon5	c.483delT	p.Y161X	.	.	97.0	23.0	83.0	0.0	.	72	.	.	Atlas-Indel,Pindel
LILRB5	10990	hgsc.bcm.edu	hg19	19	54754663	54754664	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LILRB5	NM_001081442	exon13	c.1763_1764insC	p.L588fs	.	.	120.0	44.0	94.0	0.0	.	176	.	.	Atlas-Indel,Pindel
ICT1	3396	hgsc.bcm.edu	hg19	17	73008822	73008822	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ICT1	NM_001545	exon1	c.40delG	p.A14fs	.	.	82.0	33.0	88.0	0.0	.	17	.	.	Atlas-Indel,Pindel
FAM98C	147965	hgsc.bcm.edu	hg19	19	38893823	38893823	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM98C	NM_174905	exon1	c.29delA	p.E10fs	.	.	105.0	52.0	123.0	0.0	.	39	.	.	Atlas-Indel,Pindel
DGCR8	54487	hgsc.bcm.edu	hg19	22	20074009	20074009	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DGCR8	NM_001190326	exon2	c.522delA	p.I174fs	.	.	67.0	20.0	70.0	0.0	.	53	.	.	Atlas-Indel,Pindel
COL6A1	1291	hgsc.bcm.edu	hg19	21	47414118	47414119	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL6A1	NM_001848	exon20	c.1373_1374insC	p.G458fs	.	.	255.0	87.0	263.0	0.0	.	101	.	.	Atlas-Indel,Pindel
IL17C	27189	hgsc.bcm.edu	hg19	16	88705522	88705522	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	IL17C	NM_013278	exon2	c.139delG	p.A47fs	.	.	107.0	45.0	96.0	0.0	.	6	.	.	Atlas-Indel,Pindel
LRP1	4035	hgsc.bcm.edu	hg19	12	57556223	57556223	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LRP1	NM_002332	exon14	c.2325delA	p.A775fs	.	.	68.0	28.0	72.0	0.0	.	428	.	.	Atlas-Indel,Pindel
MPZ	4359	hgsc.bcm.edu	hg19	1	161276499	161276499	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MPZ	NM_000530	exon3	c.448delG	p.V150fs	.	.	145.0	11.0	173.0	0.0	.	29	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7578275	7578277	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	TP53_ENST00000545858,NS,carcinoma,-1,2	TP53	NM_001126112	exon6	c.573_575del	p.191_192del	.	.	85.0	63.0	215.0	0.0	.	33396	.	.	Atlas-Indel,Pindel
FOXE1	2304	hgsc.bcm.edu	hg19	9	100617015	100617015	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FOXE1	NM_004473	exon1	c.818delA	p.N273fs	.	.	162.0	29.0	234.0	0.0	.	19	.	.	Atlas-Indel,Pindel
TCF7L2	6934	hgsc.bcm.edu	hg19	10	114900984	114900984	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TCF7L2	NM_001146283	exon6	c.665delA	p.H222fs	.	.	127.0	42.0	148.0	0.0	.	298	.	.	Atlas-Indel,Pindel
NXN	64359	hgsc.bcm.edu	hg19	17	726873	726874	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NXN	NM_022463	exon3	c.611_612insT	p.W204fs	.	.	74.0	52.0	125.0	0.0	.	32	.	.	Atlas-Indel,Pindel
AVPR1A	552	hgsc.bcm.edu	hg19	12	63541343	63541343	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AVPR1A	NM_000706	exon2	c.1054delA	p.S352fs	.	.	173.0	63.0	155.0	0.0	.	85	.	.	Atlas-Indel,Pindel
PTPN23	25930	hgsc.bcm.edu	hg19	3	47451532	47451532	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTPN23	NM_015466	exon20	c.2243delT	p.L748fs	.	.	245.0	23.0	260.0	0.0	.	85	.	.	Atlas-Indel,Pindel
RLTPR	146206	hgsc.bcm.edu	hg19	16	67688265	67688265	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	RLTPR	NM_001013838	exon31	c.3251delA	p.E1084fs	.	.	128.0	65.0	137.0	0.0	.	124	.	.	Atlas-Indel,Pindel
DNAJC2	27000	hgsc.bcm.edu	hg19	7	102953447	102953447	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAJC2	NM_014377	exon16	c.1739delT	p.I580fs	.	.	133.0	24.0	131.0	0.0	.	46	.	.	Atlas-Indel,Pindel
TRIM66	9866	hgsc.bcm.edu	hg19	11	8642705	8642705	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIM66	NM_014818	exon15	c.2892delA	p.P964fs	.	.	129.0	51.0	134.0	0.0	.	45	.	.	Atlas-Indel,Pindel
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86916149	86916149	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ARHGAP24	NM_001025616	exon9	c.1341delG	p.E447fs	.	.	162.0	59.0	158.0	0.0	.	116	.	.	Atlas-Indel,Pindel
SOX8	30812	hgsc.bcm.edu	hg19	16	1034924	1034924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SOX8	NM_014587	exon3	c.878delG	p.G293fs	.	.	209.0	19.0	232.0	0.0	.	29	.	.	Atlas-Indel,Pindel
GLI1	2735	hgsc.bcm.edu	hg19	12	57865761	57865761	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GLI1	NM_005269	exon12	c.3237delG	p.G1079fs	.	.	129.0	56.0	149.0	0.0	.	141	.	.	Atlas-Indel,Pindel
COBL	23242	hgsc.bcm.edu	hg19	7	51095511	51095511	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COBL	NM_015198	exon10	c.3283delT	p.F1095fs	.	.	155.0	50.0	197.0	0.0	.	167	.	.	Atlas-Indel,Pindel
GUSB	2990	hgsc.bcm.edu	hg19	7	65426023	65426023	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GUSB	NM_000181	exon12	c.1818delG	p.K606fs	.	.	80.0	31.0	72.0	0.0	.	52	.	.	Atlas-Indel,Pindel
C19orf38	255809	hgsc.bcm.edu	hg19	19	10961063	10961063	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C19orf38	NM_001136482	exon2	c.159delA	p.R53fs	.	.	97.0	46.0	93.0	0.0	.	14	.	.	Atlas-Indel,Pindel
ZNF490	57474	hgsc.bcm.edu	hg19	19	12692077	12692077	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF490	NM_020714	exon5	c.813delT	p.N271fs	.	.	83.0	29.0	82.0	0.0	.	42	.	.	Atlas-Indel,Pindel
IBTK	25998	hgsc.bcm.edu	hg19	6	82891683	82891683	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	IBTK	NM_015525	exon26	c.3639delG	p.K1213fs	.	.	65.0	44.0	111.0	0.0	.	128	.	.	Atlas-Indel,Pindel
GPR101	83550	hgsc.bcm.edu	hg19	X	136112908	136112909	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GPR101	NM_054021	exon1	c.926_927del	p.309_309del	.	.	47.0	40.0	51.0	0.0	.	96	.	.	Atlas-Indel,Pindel
NEB	4703	hgsc.bcm.edu	hg19	2	152467281	152467281	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NEB	NM_001271208	exon79	c.11906delG	p.S3969fs	.	.	70.0	32.0	124.0	0.0	.	1697	.	.	Atlas-Indel,Pindel
C1QTNF4	114900	hgsc.bcm.edu	hg19	11	47612245	47612245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	C1QTNF4,NS,carcinoma,0,1	C1QTNF4	NM_031909	exon2	c.119delT	p.L40fs	.	.	156.0	52.0	128.0	0.0	.	19	.	.	Atlas-Indel,Pindel
CLDN9	9080	hgsc.bcm.edu	hg19	16	3063895	3063895	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CLDN9	NM_020982	exon1	c.531delC	p.G177fs	.	.	77.0	36.0	72.0	0.0	.	33	.	.	Atlas-Indel,Pindel
GNRHR2	114814	hgsc.bcm.edu	hg19	1	145509916	145509916	+	RNA	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	.	.	.	.	.	.	142.0	29.0	105.0	0.0	.	.	.	.	Atlas-INDEL
C15orf37	283687	hgsc.bcm.edu	hg19	15	80216041	80216042	+	RNA	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	C15orf37	.	.	.	.	.	.	77.0	24.0	100.0	0.0	.	6	.	.	Atlas-Indel,Pindel
PLCXD3	345557	hgsc.bcm.edu	hg19	5	41382215	41382215	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PLCXD3	NM_001005473	exon2	c.526delG	p.A176fs	.	.	149.0	56.0	170.0	0.0	.	86	.	.	Atlas-Indel,Pindel
FAM178B	51252	hgsc.bcm.edu	hg19	2	97587274	97587275	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FAM178B	NM_001122646	exon11	c.1405_1406insA	p.V469fs	.	.	281.0	107.0	270.0	0.0	.	35	.	.	Atlas-Indel,Pindel
CNBD2	140894	hgsc.bcm.edu	hg19	20	34618504	34618504	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_080834	exon12	c.1652delT	p.L551fs	.	.	219.0	69.0	294.0	0.0	.	.	.	.	Atlas-Indel,Pindel
TBCC	6903	hgsc.bcm.edu	hg19	6	42713333	42713333	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TBCC	NM_003192	exon1	c.480delG	p.P160fs	.	.	488.0	85.0	173.0	0.0	.	31	.	.	Atlas-Indel,Pindel
MAML3	55534	hgsc.bcm.edu	hg19	4	140811112	140811123	+	In_Frame_Del	DEL	TGCTGCTGCTGT	TGCTGCTGCTGT	-	rs66794549	alternate_allele	TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	TGCTGCTGCTGT	TGCTGCTGCTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAML3	NM_018717	exon2	c.1468_1479del	p.490_493del	.	.	80.0	12.0	70.0	0.0	.	192	.	.	Atlas-INDEL
SCAP	22937	hgsc.bcm.edu	hg19	3	47461047	47461048	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SCAP	NM_012235	exon13	c.1711_1712insC	p.S571fs	.	.	155.0	58.0	168.0	0.0	.	88	.	.	Atlas-Indel,Pindel
PTPRD	5789	hgsc.bcm.edu	hg19	9	8521421	8521421	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTPRD	NM_130391	exon9	c.818delC	p.A273fs	.	.	85.0	35.0	96.0	0.0	.	1348	.	.	Atlas-Indel,Pindel
COL4A1	1282	hgsc.bcm.edu	hg19	13	110864792	110864792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL4A1	NM_001845	exon6	c.360delA	p.P120fs	.	.	103.0	46.0	107.0	0.0	.	372	.	.	Atlas-Indel,Pindel
OR5D13	390142	hgsc.bcm.edu	hg19	11	55541296	55541296	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	OR5D13	NM_001001967	exon1	c.382delG	p.V128fs	.	.	156.0	62.0	134.0	0.0	.	96	.	.	Atlas-Indel,Pindel
TRIP6	7205	hgsc.bcm.edu	hg19	7	100465745	100465746	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TRIP6	NM_003302	exon3	c.253_254insG	p.R85fs	.	.	202.0	82.0	206.0	0.0	.	45	.	.	Atlas-Indel,Pindel
MAK	4117	hgsc.bcm.edu	hg19	6	10764807	10764808	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MAK	NM_001242957	exon15	c.1825_1826insG	p.Q609fs	.	.	118.0	28.0	98.0	0.0	.	47	.	.	Atlas-Indel,Pindel
MIA3	375056	hgsc.bcm.edu	hg19	1	222824056	222824056	+	Splice_Site	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MIA3	NM_198551	exon10	c.3798+2A>-	.	.	.	409.0	159.0	471.0	0.0	.	167	.	.	Atlas-Indel,Pindel
OARD1	221443	hgsc.bcm.edu	hg19	6	41039018	41039018	+	Splice_Site	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	.	NM_145063	exon4	c.40-2T>-	.	.	.	339.0	139.0	147.0	0.0	.	.	.	.	Atlas-Indel,Pindel
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25497864	25497864	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNMT3A	NM_175629	exon6	c.586delT	p.Y196fs	.	.	136.0	53.0	126.0	0.0	.	1807	.	.	Atlas-Indel,Pindel
CACNA2D3	55799	hgsc.bcm.edu	hg19	3	54354484	54354484	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CACNA2D3	NM_018398	exon3	c.219delT	p.Y73X	.	.	85.0	38.0	84.0	0.0	.	159	.	.	Atlas-Indel,Pindel
SF3A1	10291	hgsc.bcm.edu	hg19	22	30736780	30736782	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SF3A1	NM_005877	exon8	c.1092_1094del	p.364_365del	.	.	65.0	20.0	88.0	0.0	.	61	.	.	Atlas-Indel,Pindel
UPK3B	80761	hgsc.bcm.edu	hg19	7	76140138	76140139	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	UPK3B	NM_030570	exon1	c.169_170insC	p.A57fs	.	.	182.0	63.0	169.0	0.0	.	15	.	.	Atlas-Indel,Pindel
SLITRK6	84189	hgsc.bcm.edu	hg19	13	86369655	86369655	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	SLITRK6	NM_032229	exon2	c.990delT	p.P330fs	.	.	62.0	26.0	61.0	0.0	.	150	.	.	Atlas-Indel,Pindel
ZNF503	84858	hgsc.bcm.edu	hg19	10	77159849	77159849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF503	NM_032772	exon2	c.600delC	p.G200fs	.	.	74.0	28.0	75.0	0.0	.	25	.	.	Atlas-Indel,Pindel
AKAP8	10270	hgsc.bcm.edu	hg19	19	15483896	15483896	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	AKAP8	NM_005858	exon5	c.628delT	p.F210fs	.	.	175.0	66.0	151.0	0.0	.	68	.	.	Atlas-Indel,Pindel
SALL4	57167	hgsc.bcm.edu	hg19	20	50408677	50408678	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	SALL4,NS,carcinoma,0,1	SALL4	NM_020436	exon2	c.345_346insT	p.F115fs	.	.	287.0	113.0	278.0	0.0	.	168	.	.	Atlas-Indel,Pindel
ALMS1	7840	hgsc.bcm.edu	hg19	2	73718037	73718038	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ALMS1	NM_015120	exon10	c.8948_8949insT	p.H2983fs	.	.	193.0	80.0	187.0	0.0	.	384	.	.	Atlas-Indel,Pindel
PRR14	78994	hgsc.bcm.edu	hg19	16	30667498	30667498	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PRR14	NM_024031	exon12	c.1623delA	p.A541fs	.	.	86.0	38.0	91.0	0.0	.	45	.	.	Atlas-Indel,Pindel
ASPM	259266	hgsc.bcm.edu	hg19	1	197070523	197070524	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	ASPM	NM_018136	exon18	c.7858_7859insA	p.Q2620fs	.	.	35.0	10.0	36.0	0.0	.	444	.	.	Atlas-Indel,Pindel
NCOA1	8648	hgsc.bcm.edu	hg19	2	24952369	24952369	+	Splice_Site	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NCOA1	NM_147233	exon15	c.2887-2G>-	.	.	.	125.0	11.0	129.0	0.0	.	210	.	.	Atlas-INDEL
WRN	7486	hgsc.bcm.edu	hg19	8	30977943	30977943	+	Splice_Site	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	WRN	NM_000553	exon21	c.2630+2A>-	.	.	.	99.0	38.0	110.0	0.0	.	116	.	.	Atlas-Indel,Pindel
PTPRS	5802	hgsc.bcm.edu	hg19	19	5221076	5221076	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PTPRS	NM_002850	exon20	c.3391delA	p.K1131fs	.	.	46.0	16.0	71.0	0.0	.	169	.	.	Atlas-Indel,Pindel
SPATA31A1	647060	hgsc.bcm.edu	hg19	9	39361342	39361342	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	NM_001085452	exon4	c.3579delG	p.V1193fs	.	.	163.0	28.0	146.0	0.0	.	.	.	.	Atlas-INDEL
TNIP1	10318	hgsc.bcm.edu	hg19	5	150410290	150410290	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TNIP1	NM_001258454	exon18	c.1896delT	p.R632fs	.	.	158.0	58.0	155.0	0.0	.	51	.	.	Atlas-Indel,Pindel
HDAC5	10014	hgsc.bcm.edu	hg19	17	42157801	42157801	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HDAC5	NM_001015053	exon22	c.2797delA	p.I933fs	.	.	84.0	39.0	79.0	0.0	.	67	.	.	Atlas-Indel,Pindel
CBFA2T2	9139	hgsc.bcm.edu	hg19	20	32224505	32224505	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	CBFA2T2_ENST00000342704,colon,carcinoma,0,2	CBFA2T2	NM_005093	exon10	c.1314delG	p.W438X	.	.	92.0	47.0	79.0	0.0	.	93	.	.	Atlas-Indel,Pindel
DHX9	1660	hgsc.bcm.edu	hg19	1	182812563	182812563	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DHX9	NM_001357	exon3	c.245delC	p.A82fs	.	.	82.0	32.0	70.0	0.0	.	114	.	.	Atlas-Indel,Pindel
NTS	4922	hgsc.bcm.edu	hg19	12	86276037	86276037	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NTS	NM_006183	exon4	c.396delC	p.D132fs	.	.	378.0	122.0	372.0	0.0	.	25	.	.	Atlas-Indel,Pindel
CARS	833	hgsc.bcm.edu	hg19	11	3026609	3026612	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	TCTC	TCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CARS	NM_001014437	exon20	c.2202_2205del	p.734_735del	.	.	99.0	40.0	109.0	0.0	.	114	.	.	Atlas-Indel,Pindel
HYDIN	54768	hgsc.bcm.edu	hg19	16	71094473	71094474	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	HYDIN	NM_001198542	exon18	c.2544_2545del	p.848_849del	.	.	133.0	18.0	156.0	0.0	.	788	.	.	Atlas-INDEL
TMEM225	338661	hgsc.bcm.edu	hg19	11	123754903	123754903	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM225	NM_001013743	exon3	c.343delT	p.W115fs	.	.	65.0	24.0	61.0	0.0	.	56	.	.	Atlas-Indel,Pindel
CCBL2	56267	hgsc.bcm.edu	hg19	1	89453938	89453940	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	CCBL2	NM_001008661	exon2	c.95_97del	p.32_33del	.	.	552.0	104.0	594.0	0.0	.	138	.	.	Atlas-Indel,Pindel
NKX6-1	4825	hgsc.bcm.edu	hg19	4	85419145	85419145	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	NKX6-1	NM_006168	exon1	c.238delC	p.L80fs	.	.	89.0	40.0	71.0	0.0	.	38	.	.	Atlas-Indel,Pindel
GJC2	57165	hgsc.bcm.edu	hg19	1	228345912	228345913	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GJC2	NM_020435	exon2	c.453_454insGAG	p.G151delinsGE	.	.	364.0	88.0	349.0	0.0	.	20	.	.	Atlas-Indel,Pindel
PAPPA	5069	hgsc.bcm.edu	hg19	9	119130003	119130003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PAPPA	NM_002581	exon19	c.4574delT	p.I1525fs	.	.	150.0	23.0	165.0	0.0	.	243	.	.	Atlas-Indel,Pindel
LILRA2	11027	hgsc.bcm.edu	hg19	19	55087325	55087325	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	LILRA2	NM_001130917	exon6	c.1003delG	p.A335fs	.	.	135.0	53.0	116.0	0.0	.	99	.	.	Atlas-Indel,Pindel
GLIPR1L2	144321	hgsc.bcm.edu	hg19	12	75816819	75816843	+	Frame_Shift_Del	DEL	GAAAAATAAGCGATTGAACACTAGT	GAAAAATAAGCGATTGAACACTAGT	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	GAAAAATAAGCGATTGAACACTAGT	GAAAAATAAGCGATTGAACACTAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GLIPR1L2	NM_152436	exon4	c.719_743del	p.240_248del	.	.	125.0	27.0	158.0	0.0	.	54	.	.	Pindel
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44556938	44556938	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NPC1L1	NM_013389	exon16	c.3237delT	p.Y1079fs	.	.	48.0	15.0	51.0	0.0	.	141	.	.	Pindel
ZNRF1	84937	hgsc.bcm.edu	hg19	16	75033762	75033762	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNRF1	NM_032268	exon1	c.192delC	p.A64fs	.	.	70.0	18.0	57.0	0.0	.	6	.	.	Pindel
JARID2	3720	hgsc.bcm.edu	hg19	6	15496635	15496636	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	JARID2,NS,carcinoma,0,1	JARID2	NM_004973	exon7	c.1179_1180insG	p.L393fs	.	.	254.0	55.0	246.0	0.0	.	135	.	.	Pindel
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1434830	1434830	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	DAZAP1,colon,carcinoma,0,1	DAZAP1	NM_018959	exon12	c.1142delC	p.S381fs	.	.	83.0	14.0	126.0	0.0	.	52	.	.	Pindel
COL28A1	340267	hgsc.bcm.edu	hg19	7	7412846	7412846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL28A1	NM_001037763	exon32	c.2692delG	p.V898fs	.	.	127.0	11.0	104.0	0.0	.	113	.	.	Pindel
COL7A1	1294	hgsc.bcm.edu	hg19	3	48605066	48605066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	COL7A1	NM_000094	exon108	c.7988delA	p.E2663fs	.	.	205.0	56.0	188.0	0.0	.	320	.	.	Pindel
GTPBP1	9567	hgsc.bcm.edu	hg19	22	39125562	39125562	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	GTPBP1	NM_004286	exon11	c.1811delA	p.E604fs	.	.	180.0	20.0	179.0	0.0	.	51	.	.	Pindel
KCNH1	3756	hgsc.bcm.edu	hg19	1	210857113	210857113	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	KCNH1	NM_172362	exon11	c.2481delC	p.G827fs	.	.	43.0	11.0	50.0	0.0	.	199	.	.	Pindel
TCP10L	140290	hgsc.bcm.edu	hg19	21	33949091	33949091	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,2	TCP10L	NM_144659	exon5	c.642delT	p.G214fs	.	.	106.0	40.0	102.0	0.0	.	24	.	.	Pindel
NES	10763	hgsc.bcm.edu	hg19	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	NES	NM_006617	exon4	c.1177delA	p.T393fs	.	.	84.0	21.0	90.0	0.0	.	196	.	.	Pindel
FKBP15	23307	hgsc.bcm.edu	hg19	9	115941002	115941002	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	FKBP15	NM_015258	exon20	c.1995delG	p.K665fs	.	.	59.0	12.0	52.0	0.0	.	128	.	.	Pindel
PVRIG	79037	hgsc.bcm.edu	hg19	7	99817848	99817848	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PVRIG	NM_024070	exon3	c.229delT	p.W77fs	.	.	55.0	11.0	46.0	0.0	.	20	.	.	Pindel
ANKRD30BL	554226	hgsc.bcm.edu	hg19	2	132912268	132912268	+	RNA	DEL	T	T	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ANKRD30BL	.	.	.	.	.	.	320.0	70.0	348.0	0.0	.	36	.	.	Pindel
ZNF236	7776	hgsc.bcm.edu	hg19	18	74587535	74587535	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ZNF236	NM_007345	exon6	c.748delG	p.E250fs	.	.	134.0	42.0	117.0	0.0	.	325	.	.	Pindel
ABLIM2	84448	hgsc.bcm.edu	hg19	4	8031388	8031389	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	ABLIM2	NM_001130087	exon12	c.1196_1197insC	p.R399fs	.	.	139.0	38.0	140.0	0.0	.	59	.	.	Pindel
DLK2	65989	hgsc.bcm.edu	hg19	6	43418413	43418413	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DLK2	NM_206539	exon6	c.1017delT	p.P339fs	.	.	599.0	71.0	222.0	0.0	.	22	.	.	Pindel
PP14571	0	hgsc.bcm.edu	hg19	2	241390099	241390100	+	RNA	INS	-	-	G	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	.	.	.	.	.	.	.	171.0	23.0	170.0	0.0	.	.	.	.	Pindel
PLOD3	8985	hgsc.bcm.edu	hg19	7	100856126	100856126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	PLOD3	NM_001084	exon8	c.877delC	p.Q293fs	.	.	52.0	11.0	52.0	0.0	.	79	.	.	Pindel
TNXB	7148	hgsc.bcm.edu	hg19	6	32029263	32029263	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TNXB	NM_019105	exon21	c.7404delC	p.G2468fs	.	.	198.0	30.0	131.0	0.0	.	553	.	.	Pindel
TMEM232	642987	hgsc.bcm.edu	hg19	5	110003053	110003054	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	TMEM232	NM_001039763	exon2	c.1_2insT	p.M1fs	.	.	237.0	63.0	263.0	0.0	.	57	.	.	Pindel
DNAH14	127602	hgsc.bcm.edu	hg19	1	225211543	225211543	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	DNAH14	NM_001145154	exon11	c.1333delG	p.E445fs	.	.	250.0	23.0	224.0	0.0	.	300	.	.	Pindel
IQCC	55721	hgsc.bcm.edu	hg19	1	32673443	32673443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.,1	IQCC	NM_001160042	exon5	c.1400delT	p.L467fs	.	.	314.0	83.0	361.0	0.0	.	46	.	.	Pindel
MMEL1	79258	hgsc.bcm.edu	hg19	1	2560839	2560840	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-4R-AA8I-01A-11D-A382-10	TCGA-4R-AA8I-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8dba9681-e78c-40e4-a7d9-b031da622799	9ab82c20-518e-4e2e-9744-d813c8ecf079	.	MMEL1	NM_033467	exon2	c.85_86insG	p.L29fs	.	.	246.0	63.0	258.0	0.0	.	64	.	.	Pindel
