Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HENMT1	113802	hgsc.bcm.edu	hg19	1	109191371	109191371	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	HENMT1	NM_144584	exon8	c.C999T	p.F333F	AACACAGAAGGGT	.	77.0	51.0	180.0	1.0	.	38	.	.	Atlas-SNP
VPS45	11311	hgsc.bcm.edu	hg19	1	150053492	150053492	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	VPS45	NM_007259	exon8	c.G756T	p.V252V	CAGAGTGCCGGGA	.	194.0	47.0	144.0	0.0	.	47	.	.	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154201144	154201144	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	UBAP2L	NM_001127320	exon4	c.C222T	p.D74D	GCATGACTGCAAT	.	62.0	12.0	44.0	0.0	.	197	.	.	Atlas-SNP
FLAD1	80308	hgsc.bcm.edu	hg19	1	154962718	154962718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	FLAD1	NM_025207	exon4	c.A1349T	p.Q450L	TTCTACAGGACAC	.	215.0	94.0	134.0	0.0	.	52	.	.	Atlas-SNP
TBX19	9095	hgsc.bcm.edu	hg19	1	168250458	168250458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TBX19	NM_005149	exon1	c.A130G	p.I44V	CAGATCATCCTGG	.	232.0	53.0	174.0	0.0	.	68	.	.	Atlas-SNP
FMO2	2327	hgsc.bcm.edu	hg19	1	171176859	171176859	+	Silent	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	FMO2	NM_001460	exon8	c.T1186C	p.L396L	TTAGGCTTGTGTA	.	423.0	98.0	283.0	0.0	.	66	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176564000	176564000	+	Silent	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PAPPA2	NM_021936	exon3	c.T1260C	p.R420R	TTTCCGTGGACAC	.	161.0	39.0	104.0	0.0	.	665	.	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	hg19	1	218578606	218578606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TGFB2	NM_001135599	exon3	c.G526C	p.E176Q	AAAGCAGAGTTCA	.	160.0	30.0	135.0	0.0	.	102	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245862336	245862336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	KIF26B	NM_018012	exon14	c.G6175C	p.E2059Q	CTCAGTGAATGTA	.	148.0	67.0	102.0	0.0	.	343	.	.	Atlas-SNP
PQLC3	130814	hgsc.bcm.edu	hg19	2	11300609	11300609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PQLC3	NM_152391	exon2	c.G161T	p.R54L	TTCTGCGGTACCA	.	52.0	16.0	73.0	0.0	.	8	.	.	Atlas-SNP
SEMA4F	10505	hgsc.bcm.edu	hg19	2	74900921	74900921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	SEMA4F,NS,carcinoma,0,1	SEMA4F	NM_004263	exon7	c.G788A	p.R263H	ACGAGCGCATTAA	.	58.0	24.0	71.0	0.0	.	89	.	.	Atlas-SNP
PROC	5624	hgsc.bcm.edu	hg19	2	128184696	128184696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PROC	NM_000312	exon8	c.T694A	p.S232T	CTGGACTCAAAGA	.	53.0	22.0	56.0	0.0	.	31	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179596477	179596477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TTN	NM_001267550	exon58	c.T17125C	p.C5709R	CCCGACACTGGTA	.	73.0	26.0	93.0	0.0	.	18412	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204031020	204031020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	NBEAL1	NM_001114132	exon36	c.G5776A	p.G1926R	GAAGATGGTGAGG	.	216.0	55.0	218.0	0.0	.	266	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238253721	238253721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	COL6A3	NM_004369	exon34	c.A7142G	p.Q2381R	ATGCTTTGGATGA	.	183.0	89.0	223.0	0.0	.	608	.	.	Atlas-SNP
SHISA5	51246	hgsc.bcm.edu	hg19	3	48520585	48520585	+	Splice_Site	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SHISA5	NM_016479	exon4	c.314+1G>A	.	TACTTACCCTGAC	.	55.0	19.0	59.0	0.0	.	10	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77147199	77147199	+	Silent	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ROBO2	NM_002942	exon2	c.G96A	p.R32R	CCCGCGGATTGTG	.	86.0	34.0	116.0	0.0	.	527	.	.	Atlas-SNP
TRAT1	50852	hgsc.bcm.edu	hg19	3	108572654	108572654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TRAT1	NM_016388	exon6	c.A491G	p.E164G	CAGTAGAGGAAAA	.	280.0	107.0	393.0	0.0	.	48	.	.	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	hg19	4	5399957	5399957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	STK32B	NM_018401	exon5	c.T458C	p.L153P	ATATCCTGCTGGA	.	68.0	27.0	87.0	0.0	.	87	.	.	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39280267	39280267	+	Silent	SNP	G	G	C	rs371200402	alternate_allele	TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	WDR19	NM_025132	exon36	c.G4026C	p.L1342L	GGAACTGTGATTG	.	157.0	70.0	187.0	0.0	.	96	.	.	Atlas-SNP
BEND4	389206	hgsc.bcm.edu	hg19	4	42154069	42154069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	BEND4,NS,carcinoma,0,1	BEND4	NM_001159547	exon2	c.C92A	p.P31H	TTGCTGGGGAACG	.	82.0	29.0	113.0	0.0	.	67	.	.	Atlas-SNP
GSTCD	79807	hgsc.bcm.edu	hg19	4	106766631	106766631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GSTCD	NM_001031720	exon12	c.G1799T	p.R600L	TGGATCGAGCAAG	.	74.0	30.0	78.0	0.0	.	69	.	.	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	hg19	4	186544464	186544464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SORBS2	NM_001270771	exon16	c.C2407A	p.P803T	GCACAGGACTGAC	.	44.0	18.0	56.0	0.0	.	300	.	.	Atlas-SNP
TMEM174	134288	hgsc.bcm.edu	hg19	5	72469952	72469952	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	TMEM174,NS,malignant_melanoma,0,1	TMEM174	NM_153217	exon2	c.C692G	p.S231C	GCTTCTCTCCTCC	.	106.0	29.0	122.0	0.0	.	22	.	.	Atlas-SNP
PCDHB12	56124	hgsc.bcm.edu	hg19	5	140589288	140589288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PCDHB12	NM_018932	exon1	c.A809T	p.D270V	ATTTAGACTCTGG	.	115.0	44.0	132.0	0.0	.	179	.	.	Atlas-SNP
PCDH1	5097	hgsc.bcm.edu	hg19	5	141248468	141248468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PCDH1	NM_032420	exon2	c.C569T	p.P190L	GCCAGCGGGATGG	.	182.0	77.0	185.0	0.0	.	119	.	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12121246	12121246	+	Silent	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	HIVEP1	NM_002114	exon4	c.T1218C	p.Y406Y	AAAATATATTTGT	.	84.0	29.0	91.0	0.0	.	242	.	.	Atlas-SNP
SLC17A3	10786	hgsc.bcm.edu	hg19	6	25850803	25850803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SLC17A3	NM_001098486	exon8	c.T877C	p.S293P	GTAGAGATCTGAG	.	114.0	39.0	119.0	0.0	.	95	.	.	Atlas-SNP
PRRT1	80863	hgsc.bcm.edu	hg19	6	32117406	32117406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PRRT1	NM_030651	exon3	c.C652A	p.R218S	GCGGGCGCCTCGG	.	61.0	30.0	89.0	0.0	.	14	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32190405	32190405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	NOTCH4	NM_004557	exon3	c.G334A	p.E112K	ATCTCTCACCAGT	.	153.0	51.0	172.0	0.0	.	201	.	.	Atlas-SNP
GLP1R	2740	hgsc.bcm.edu	hg19	6	39048499	39048499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GLP1R	NM_002062	exon12	c.G1208A	p.C403Y	TATACTGCTTTGT	.	70.0	23.0	83.0	0.0	.	64	.	.	Atlas-SNP
GLP1R	2740	hgsc.bcm.edu	hg19	6	39048500	39048500	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GLP1R	NM_002062	exon12	c.C1209A	p.C403X	ATACTGCTTTGTC	.	70.0	23.0	82.0	0.0	.	64	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76023250	76023250	+	Silent	SNP	C	C	T	rs147346630	alternate_allele	TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	FILIP1	NM_015687	exon5	c.G2298A	p.G766G	CTCCTGCCCCATG	.	79.0	27.0	113.0	0.0	.	173	.	C|1.000;A|0.000	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	hg19	7	6547714	6547714	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GRID2IP	NM_001145118	exon13	c.C2446A	p.R816R	GGCCCCGGGACAG	.	27.0	8.0	39.0	0.0	.	82	.	.	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47408695	47408695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TNS3	NM_022748	exon17	c.C1548A	p.S516R	GTTCTGGCTGCTC	.	78.0	23.0	78.0	0.0	.	140	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	152132847	152132847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	MLL3	NM_170606	exon1	c.G25A	p.V9M	GCTCCACGCTCTT	.	137.0	42.0	141.0	0.0	.	1564	.	.	Atlas-SNP
PINX1	54984	hgsc.bcm.edu	hg19	8	10690495	10690495	+	Splice_Site	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PINX1	NM_017884	exon4	c.130-1G>A	.	TAAACCCTGTGGA	.	29.0	13.0	76.0	0.0	.	38	.	.	Atlas-SNP
MCM4	4173	hgsc.bcm.edu	hg19	8	48883923	48883923	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	MCM4	NM_182746	exon13	c.A1823T	p.N608I	AGCTCAATGCGCG	.	152.0	31.0	86.0	0.0	.	97	.	.	Atlas-SNP
JRK	8629	hgsc.bcm.edu	hg19	8	143747230	143747230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	.	NM_003724	exon2	c.C248T	p.T83M	TTGGGCGTGTGCA	.	112.0	23.0	62.0	0.0	.	.	.	.	Atlas-SNP
TIGD5	84948	hgsc.bcm.edu	hg19	8	144681433	144681433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TIGD5	NM_032862	exon1	c.C1360A	p.L454I	TTCATGCTCAAGG	.	174.0	37.0	98.0	0.0	.	22	.	.	Atlas-SNP
IFNB1	3456	hgsc.bcm.edu	hg19	9	21077442	21077442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	IFNB1	NM_002176	exon1	c.C427A	p.L143M	TTTTCAGGTGCAG	.	71.0	41.0	159.0	0.0	.	33	.	.	Atlas-SNP
GPR144	347088	hgsc.bcm.edu	hg19	9	127218951	127218951	+	Silent	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GPR144	NM_001161808	exon8	c.C1500G	p.P500P	GGCACCCCTGCTG	.	17.0	10.0	56.0	0.0	.	33	.	.	Atlas-SNP
ST8SIA6	338596	hgsc.bcm.edu	hg19	10	17363172	17363172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ST8SIA6	NM_001004470	exon8	c.C902T	p.P301L	TACTTGGGATGGA	.	128.0	54.0	195.0	0.0	.	85	.	.	Atlas-SNP
PRKG1	5592	hgsc.bcm.edu	hg19	10	54042015	54042015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	PRKG1,ear,carcinoma,0,1	PRKG1	NM_006258	exon14	c.C1648T	p.H550Y	AAAGGCCATGACA	.	109.0	41.0	164.0	0.0	.	167	.	.	Atlas-SNP
DDIT4	54541	hgsc.bcm.edu	hg19	10	74034129	74034129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	DDIT4	NM_019058	exon2	c.C155G	p.S52W	AGAGCTCGGACTG	.	45.0	20.0	40.0	0.0	.	14	.	.	Atlas-SNP
SH3PXD2A	9644	hgsc.bcm.edu	hg19	10	105361743	105361743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SH3PXD2A	NM_014631	exon14	c.G3148A	p.V1050I	TAGAGACGTACAC	.	70.0	29.0	74.0	0.0	.	90	.	.	Atlas-SNP
CCDC147	159686	hgsc.bcm.edu	hg19	10	106163548	106163548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	CCDC147	NM_001008723	exon14	c.G2101A	p.E701K	GCCCTGGAGGAGG	.	78.0	35.0	88.0	0.0	.	137	.	.	Atlas-SNP
MRGPRX4	117196	hgsc.bcm.edu	hg19	11	18195075	18195075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	MRGPRX4	NM_054032	exon1	c.G272C	p.S91T	ATATCAGCCATCT	.	90.0	27.0	105.0	0.0	.	68	.	.	Atlas-SNP
ARFGAP2	84364	hgsc.bcm.edu	hg19	11	47193261	47193261	+	Missense_Mutation	SNP	G	G	A	rs138040761		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ARFGAP2	NM_032389	exon9	c.C763T	p.R255C	GCTCACGGAGCTT	.	54.0	5.0	46.0	0.0	.	43	.	G|1.000;A|0.000	Atlas-SNP
OR1S1	219959	hgsc.bcm.edu	hg19	11	57983067	57983067	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	OR1S1	NM_001004458	exon1	c.A851T	p.D284V	ACACTGATAAGAT	.	107.0	27.0	141.0	0.0	.	139	.	.	Atlas-SNP
MFRP	83552	hgsc.bcm.edu	hg19	11	119213689	119213689	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	MFRP	NM_031433	exon10	c.C1149A	p.P383P	GAGGTGGGGGGGT	.	50.0	21.0	74.0	0.0	.	63	.	.	Atlas-SNP
BLID	414899	hgsc.bcm.edu	hg19	11	121986326	121986326	+	Missense_Mutation	SNP	T	T	A	rs375451446	alternate_allele	TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	BLID	NM_001001786	exon1	c.A305T	p.N102I	GAGGAATTGCATA	.	100.0	41.0	107.0	0.0	.	20	.	.	Atlas-SNP
ESAM	90952	hgsc.bcm.edu	hg19	11	124626226	124626226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ESAM	NM_138961	exon4	c.G484T	p.G162C	GCACACCCTGGAG	.	40.0	10.0	59.0	0.0	.	31	.	.	Atlas-SNP
ZNF384	171017	hgsc.bcm.edu	hg19	12	6787570	6787570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ZNF384	NM_133476	exon6	c.G409T	p.A137S	TCTGAGCTGATGA	.	116.0	38.0	117.0	0.0	.	102	.	.	Atlas-SNP
TAS2R20	259295	hgsc.bcm.edu	hg19	12	11150332	11150332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TAS2R20	NM_176889	exon1	c.T143C	p.I48T	GCAGCAATAATTT	.	218.0	80.0	292.0	0.0	.	17	.	.	Atlas-SNP
DAZAP2	9802	hgsc.bcm.edu	hg19	12	51634874	51634874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	DAZAP2	NM_001136269	exon3	c.G352T	p.A118S	TTTGGAGCTGGGG	.	31.0	12.0	52.0	0.0	.	6	.	.	Atlas-SNP
CSAD	51380	hgsc.bcm.edu	hg19	12	53566426	53566426	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	CSAD	NM_015989	exon5	c.G214C	p.E72Q	TCCACTCACAGAC	.	23.0	10.0	43.0	0.0	.	66	.	.	Atlas-SNP
SRGAP1	57522	hgsc.bcm.edu	hg19	12	64377754	64377754	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SRGAP1	NM_020762	exon2	c.A95T	p.Q32L	AACAACAAAAATG	.	82.0	38.0	83.0	0.0	.	146	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25378454	25378454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	RNF17	NM_001184993	exon15	c.T1978A	p.F660I	AGTCACTTTGAAA	.	81.0	29.0	103.0	0.0	.	259	.	.	Atlas-SNP
OLFM4	10562	hgsc.bcm.edu	hg19	13	53608515	53608515	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	OLFM4	NM_006418	exon2	c.C237T	p.D79D	GGATGACCGTGGG	.	68.0	18.0	103.0	0.0	.	94	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77836229	77836229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	MYCBP2	NM_015057	exon11	c.G1606A	p.A536T	GTCCTGCACCAAG	.	44.0	13.0	44.0	0.0	.	1029	.	.	Atlas-SNP
SPATA7	55812	hgsc.bcm.edu	hg19	14	88857749	88857749	+	Missense_Mutation	SNP	G	G	T	rs200551653	alternate_allele	TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SPATA7	NM_018418	exon2	c.G44T	p.R15I	TTCCCAGATATGG	.	69.0	25.0	93.0	0.0	.	58	.	G|0.999;C|0.001	Atlas-SNP
DUOXA2	405753	hgsc.bcm.edu	hg19	15	45410034	45410034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	DUOXA2	NM_207581	exon6	c.C890T	p.P297L	GCTCACCTCTTAT	.	77.0	39.0	106.0	0.0	.	38	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75968199	75968199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	CSPG4	NM_001897	exon10	c.A6661G	p.N2221D	ACATGTTGGCCTC	.	30.0	9.0	38.0	0.0	.	175	.	.	Atlas-SNP
GP2	2813	hgsc.bcm.edu	hg19	16	20335564	20335564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GP2	NM_001502	exon3	c.A109G	p.I37V	CTTCAATGGGGTT	.	143.0	65.0	199.0	0.0	.	122	.	.	Atlas-SNP
ITFG1	81533	hgsc.bcm.edu	hg19	16	47292650	47292650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ITFG1	NM_030790	exon12	c.G1223T	p.G408V	AAGATTCCCTGGA	.	42.0	8.0	40.0	0.0	.	49	.	.	Atlas-SNP
VPS4A	27183	hgsc.bcm.edu	hg19	16	69356497	69356497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	VPS4A	NM_013245	exon10	c.T1106C	p.M369T	GCATGATGATTGA	.	64.0	5.0	85.0	0.0	.	18	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81232485	81232485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PKD1L2	NM_001076780	exon7	c.T1325C	p.I442T	ACTGTAATGTTTC	.	145.0	43.0	191.0	0.0	.	361	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	hg19	17	29162604	29162604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ATAD5	NM_024857	exon2	c.A1505G	p.K502R	CTCAAAAGAAAGA	.	205.0	87.0	240.0	0.0	.	150	.	.	Atlas-SNP
PIGW	284098	hgsc.bcm.edu	hg19	17	34893442	34893442	+	Silent	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PIGW	NM_178517	exon2	c.A492G	p.T164T	TGGGACAGGAGCA	.	102.0	32.0	135.0	0.0	.	50	.	.	Atlas-SNP
SOCS7	30837	hgsc.bcm.edu	hg19	17	36508540	36508540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SOCS7	NM_014598	exon1	c.G413A	p.S138N	AGCTCAGCAGCCC	.	194.0	81.0	217.0	0.0	.	22	.	.	Atlas-SNP
SOCS7	30837	hgsc.bcm.edu	hg19	17	36508541	36508541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	SOCS7	NM_014598	exon1	c.C414G	p.S138R	GCTCAGCAGCCCG	.	189.0	80.0	220.0	0.0	.	22	.	.	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41246777	41246777	+	Silent	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	BRCA1	NM_007298	exon9	c.T771C	p.H257H	TTCTGGATGCCTC	.	53.0	25.0	71.0	0.0	.	304	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65174829	65174829	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	HELZ,NS,carcinoma,0,2	HELZ	NM_014877	exon13	c.G1376C	p.R459P	TGTAACCGTGACT	.	78.0	21.0	126.0	0.0	.	160	.	.	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	hg19	17	77808906	77808906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	CBX4	NM_003655	exon5	c.G535T	p.E179X	GCGCCTCCTTGTG	.	49.0	17.0	61.0	0.0	.	40	.	.	Atlas-SNP
SMAD4	4089	hgsc.bcm.edu	hg19	18	48604747	48604747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	SMAD4,NS,carcinoma,0,3	SMAD4	NM_005359	exon12	c.C1569G	p.C523W	ACCTTGCTGGATT	.	52.0	33.0	103.0	0.0	.	822	.	.	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	hg19	18	77474844	77474844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	CTDP1	NM_004715	exon8	c.A1384T	p.S462C	AGCAGCAGTGAGT	.	58.0	31.0	152.0	0.0	.	67	.	.	Atlas-SNP
LPPR3	0	hgsc.bcm.edu	hg19	19	813388	813388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	.	NM_024888	exon7	c.G1423A	p.E475K	CGTCCTCCTCCTC	.	34.0	13.0	36.0	0.0	.	.	.	.	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	hg19	19	3449113	3449113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	NFIC	NM_001245004	exon7	c.C1060T	p.R354W	CACCACCGGCCCG	.	65.0	29.0	82.0	0.0	.	36	.	.	Atlas-SNP
FCER2	2208	hgsc.bcm.edu	hg19	19	7763670	7763670	+	Silent	SNP	G	G	T	rs376326260	alternate_allele	TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	FCER2	NM_002002	exon3	c.C93A	p.T31T	AGCGGCGGTCACC	.	101.0	35.0	113.0	0.0	.	19	.	.	Atlas-SNP
C19orf57	79173	hgsc.bcm.edu	hg19	19	14006250	14006250	+	Silent	SNP	C	C	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	C19orf57	NM_024323	exon3	c.G141A	p.E47E	TTTGCCCTCTGGC	.	113.0	44.0	163.0	0.0	.	34	.	.	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	hg19	19	39915656	39915656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PLEKHG2	NM_022835	exon19	c.G3883C	p.G1295R	CGGCAGGGGCCTG	.	40.0	19.0	65.0	0.0	.	329	.	.	Atlas-SNP
BPIFA2	140683	hgsc.bcm.edu	hg19	20	31760750	31760750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	.	NM_080574	exon3	c.A170G	p.K57R	TTGAGAAACTGAA	.	83.0	33.0	101.0	0.0	.	.	.	.	Atlas-SNP
DLGAP4	22839	hgsc.bcm.edu	hg19	20	35060202	35060202	+	Missense_Mutation	SNP	G	G	A	rs374922768		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	DLGAP4	NM_014902	exon2	c.G82A	p.D28N	GGGACCGACCGCA	.	197.0	98.0	250.0	0.0	.	111	.	.	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	hg19	21	22782741	22782741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	NCAM2	NM_004540	exon10	c.A1343G	p.N448S	CGACCAATTTAAA	.	245.0	95.0	318.0	1.0	.	220	.	.	Atlas-SNP
UPRT	139596	hgsc.bcm.edu	hg19	X	74494410	74494410	+	Silent	SNP	G	G	T	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	UPRT	NM_145052	exon1	c.G321T	p.G107G	GATCGGGGCGCAG	.	102.0	86.0	157.0	0.0	.	46	.	.	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	hg19	X	151818999	151818999	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GABRQ	NM_018558	exon7	c.C857A	p.S286X	GGATATCGTTTTG	.	115.0	83.0	118.0	0.0	.	131	.	.	Atlas-SNP
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	4967469	4967469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	PCDH11Y	NM_032972	exon2	c.G1850A	p.R617K	TTCCAAGGCATGG	.	154.0	109.0	226.0	0.0	.	163	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7695	7695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	.	ENST00000361739	exon1	c.T110C	p.L37P	GCTTCCTAGTCCT	.	26.0	22.0	20.0	0.0	.	.	.	.	Atlas-SNP
GZMH	2999	hgsc.bcm.edu	hg19	14	25076509	25076509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	GZMH,NS,carcinoma,0,1	GZMH	NM_033423	exon4	c.444delT	p.G148fs	.	.	32.0	16.0	40.0	0.0	.	24	.	.	Atlas-Indel,Pindel
ITPKB	3707	hgsc.bcm.edu	hg19	1	226923826	226923826	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ITPKB	NM_002221	exon2	c.1335delA	p.G445fs	.	.	87.0	13.0	84.0	0.0	.	158	.	.	Atlas-Indel,Pindel
CHRM1	1128	hgsc.bcm.edu	hg19	11	62677923	62677927	+	Frame_Shift_Del	DEL	TTCTC	TTCTC	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	TTCTC	TTCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	CHRM1	NM_000738	exon2	c.647_651del	p.216_217del	.	.	37.0	18.0	60.0	0.0	.	29	.	.	Atlas-Indel,Pindel
TACR3	6870	hgsc.bcm.edu	hg19	4	104640792	104640792	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	TACR3	NM_001059	exon1	c.42delT	p.G14fs	.	.	46.0	18.0	55.0	0.0	.	102	.	.	Atlas-Indel,Pindel
ZSCAN16	80345	hgsc.bcm.edu	hg19	6	28093436	28093445	+	Frame_Shift_Del	DEL	CAGAATGCCA	CAGAATGCCA	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	CAGAATGCCA	CAGAATGCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	ZSCAN16	NM_025231	exon2	c.214_223del	p.72_75del	.	.	123.0	29.0	177.0	0.0	.	24	.	.	Atlas-Indel,Pindel
GDNF	2668	hgsc.bcm.edu	hg19	5	37834855	37834855	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	GDNF	NM_001190469	exon2	c.96delC	p.H32fs	.	.	187.0	47.0	209.0	0.0	.	56	.	.	Atlas-Indel,Pindel
RAI14	26064	hgsc.bcm.edu	hg19	5	34823606	34823607	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	RAI14	NM_001145525	exon17	c.1667_1668del	p.556_556del	.	.	142.0	52.0	133.0	0.0	.	100	.	.	Atlas-Indel,Pindel
NUAK2	81788	hgsc.bcm.edu	hg19	1	205290603	205290626	+	In_Frame_Del	DEL	GGTGCCGCAGGTTGTGCTTGTGGT	GGTGCCGCAGGTTGTGCTTGTGGT	-	novel		TCGA-5C-A9VH-01A-11D-A36X-10	TCGA-5C-A9VH-10A-01D-A370-10	GGTGCCGCAGGTTGTGCTTGTGGT	GGTGCCGCAGGTTGTGCTTGTGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	44e358dc-cbf5-4177-89a4-3d0d0fe2ff38	b56ae97e-c498-4223-a583-2b86e313f4bb	.	NUAK2	NM_030952	exon1	c.132_155del	p.44_52del	.	.	147.0	12.0	148.0	0.0	.	107	.	.	Pindel
