Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
INADL	10207	hgsc.bcm.edu	hg19	1	62330235	62330235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INADL	NM_176877	exon20	c.A2765C	p.Q922P	AGTCTCAAGAGGC	.	35.0	19.0	83.0	0.0	.	179	.	.	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114380695	114380695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PTPN22	NM_015967	exon13	c.C1327A	p.P443T	TTATTGGCACCTT	.	38.0	14.0	129.0	0.0	.	90	.	.	Atlas-SNP
GJA8	2703	hgsc.bcm.edu	hg19	1	147380863	147380863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GJA8	NM_005267	exon2	c.C781T	p.Q261X	TCCATCCAGAAAG	.	66.0	31.0	74.0	0.0	.	108	.	.	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155723018	155723018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GON4L	NM_001037533	exon29	c.G5819A	p.R1940K	CCCTTTCTGGTGG	.	223.0	28.0	264.0	0.0	.	392	.	.	Atlas-SNP
DUSP10	11221	hgsc.bcm.edu	hg19	1	221912367	221912367	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DUSP10	NM_007207	exon2	c.C720T	p.T240T	TTCATTGGTATTC	.	156.0	19.0	234.0	0.0	.	64	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237948157	237948157	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RYR2	NM_001035	exon90	c.T13145A	p.L4382Q	TTGGCCTGGATCT	.	77.0	23.0	84.0	0.0	.	1273	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248525606	248525606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2T4	NM_001004696	exon1	c.C724A	p.P242T	CTCATCCCTGTGG	.	1004.0	67.0	1155.0	0.0	.	126	.	.	Atlas-SNP
OR2T6	254879	hgsc.bcm.edu	hg19	1	248551626	248551626	+	Silent	SNP	C	C	T	rs148186126		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	OR2T6,arm,malignant_melanoma,0,1	OR2T6	NM_001005471	exon1	c.C717T	p.A239A	CTTTGCCACCTGC	.	310.0	86.0	307.0	0.0	.	101	.	.	Atlas-SNP
OR2G6	391211	hgsc.bcm.edu	hg19	1	248684959	248684959	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	OR2G6,NS,carcinoma,0,1	OR2G6	NM_001013355	exon1	c.C12T	p.T4T	GGAAACCAACAAC	.	215.0	74.0	250.0	0.0	.	124	.	.	Atlas-SNP
OR2T10	127069	hgsc.bcm.edu	hg19	1	248756794	248756794	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OR2T10	NM_001004693	exon1	c.C276A	p.I92I	GACCGAGATGGTC	.	175.0	30.0	219.0	0.0	.	58	.	.	Atlas-SNP
SMPD4	55627	hgsc.bcm.edu	hg19	2	130930247	130930247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SMPD4	NM_017751	exon7	c.C575A	p.P192Q	TCGAACGGATCTG	.	158.0	34.0	184.0	0.0	.	67	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160807990	160807990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PLA2R1	NM_001195641	exon24	c.C3401A	p.T1134N	TACCAAGTCATAT	.	434.0	137.0	574.0	0.0	.	153	.	.	Atlas-SNP
TRAF3IP1	26146	hgsc.bcm.edu	hg19	2	239237694	239237694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TRAF3IP1	NM_015650	exon5	c.G626T	p.G209V	ATGGCGGAAACAG	.	203.0	34.0	217.0	0.0	.	58	.	.	Atlas-SNP
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50220186	50220186	+	Silent	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SEMA3F	NM_004186	exon9	c.G873T	p.A291A	CCCCGCGGTGTAC	.	24.0	11.0	47.0	0.0	.	62	.	.	Atlas-SNP
MRPS22	56945	hgsc.bcm.edu	hg19	3	139062905	139062905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MRPS22	NM_020191	exon1	c.C37T	p.L13F	TGGAGCCTCTTGA	.	54.0	16.0	49.0	0.0	.	40	.	.	Atlas-SNP
PLS1	5357	hgsc.bcm.edu	hg19	3	142388293	142388293	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PLS1	NM_001172312	exon3	c.C132T	p.S44S	AGCAAGCCTTCCT	.	79.0	9.0	107.0	0.0	.	71	.	.	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184039489	184039489	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	EIF4G1	NM_001194946	exon11	c.G1138T	p.E380X	GAACCAGAGGTGG	.	135.0	21.0	163.0	0.0	.	151	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	hg19	4	651215	651215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PDE6B	NM_001145291	exon10	c.A1333G	p.K445E	AACCGCAAGGACA	.	192.0	32.0	173.0	0.0	.	80	.	.	Atlas-SNP
CRMP1	1400	hgsc.bcm.edu	hg19	4	5837733	5837733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CRMP1	NM_001014809	exon11	c.G1532A	p.R511K	CCTTTCCTTGGGT	.	91.0	18.0	142.0	0.0	.	118	.	.	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	hg19	4	42580401	42580401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ATP8A1	NM_001105529	exon12	c.G1004A	p.G335D	GCGCCACCATCTG	.	91.0	14.0	117.0	0.0	.	206	.	.	Atlas-SNP
PABPC4L	132430	hgsc.bcm.edu	hg19	4	135121364	135121364	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PABPC4L	NM_001114734	exon2	c.C985T	p.R329X	CCTGTCGCTCGAC	.	41.0	7.0	94.0	0.0	.	60	.	.	Atlas-SNP
FAM134B	54463	hgsc.bcm.edu	hg19	5	16474884	16474884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FAM134B	NM_001034850	exon9	c.C1460T	p.S487L	AAACCTGAAGACT	.	115.0	54.0	135.0	0.0	.	72	.	.	Atlas-SNP
C5orf22	55322	hgsc.bcm.edu	hg19	5	31534433	31534433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C5orf22	NM_018356	exon2	c.G136C	p.V46L	AGTAATGTAAGTT	.	328.0	64.0	505.0	0.0	.	48	.	.	Atlas-SNP
TMEM173	340061	hgsc.bcm.edu	hg19	5	138855859	138855859	+	Missense_Mutation	SNP	G	G	T	rs370381358	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TMEM173	NM_198282	exon8	c.C1127A	p.T376K	AAATCCGTGCGGA	.	67.0	31.0	116.0	0.0	.	19	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140237874	140237874	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDHA10	NM_031859	exon1	c.T2241C	p.S747S	CTGGTCTTACTCG	.	134.0	29.0	285.0	0.0	.	358	.	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140746244	140746244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCDHGA5	NM_032054	exon1	c.G2347A	p.E783K	AGTGAAGAGAGCT	.	81.0	16.0	161.0	0.0	.	215	.	.	Atlas-SNP
HOXA4	3201	hgsc.bcm.edu	hg19	7	27168891	27168891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	HOXA4,NS,carcinoma,0,1	HOXA4	NM_002141	exon2	c.C916T	p.P306S	GGTGGGGATGGAG	.	343.0	56.0	321.0	1.0	.	21	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84666319	84666319	+	Silent	SNP	C	C	G	rs143217112	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SEMA3D	NM_152754	exon10	c.G1077C	p.V359V	GCTATACACACAA	.	66.0	15.0	117.0	0.0	.	177	.	C|1.000;T|0.000	Atlas-SNP
ZSCAN25	221785	hgsc.bcm.edu	hg19	7	99227217	99227217	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_145115	exon8	c.C1209T	p.Y403Y	GCCCTACGTGTGC	.	46.0	11.0	77.0	0.0	.	.	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128489494	128489494	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FLNC	NM_001127487	exon30	c.G5061A	p.G1687G	GGATGGGGCAGAG	.	73.0	10.0	94.0	0.0	.	339	.	.	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	hg19	7	135107050	135107050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CNOT4	NM_001190850	exon3	c.A227G	p.Q76R	ATCCTTTGCAGCT	.	206.0	34.0	272.0	0.0	.	146	.	.	Atlas-SNP
GSTK1	373156	hgsc.bcm.edu	hg19	7	142964755	142964755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GSTK1	NM_001143679	exon5	c.C634A	p.L212M	GGACTTCTGGAAA	.	108.0	42.0	103.0	0.0	.	36	.	.	Atlas-SNP
CYP7A1	1581	hgsc.bcm.edu	hg19	8	59409293	59409293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CYP7A1	NM_000780	exon3	c.C778T	p.R260C	ACATGCGCAGGCT	.	172.0	41.0	203.0	0.0	.	76	.	.	Atlas-SNP
FOXH1	8928	hgsc.bcm.edu	hg19	8	145700607	145700607	+	Missense_Mutation	SNP	C	C	A	rs150426097	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	FOXH1	NM_003923	exon2	c.G212T	p.R71M	TCTTCCCTGAAGA	.	58.0	13.0	59.0	0.0	.	17	.	C|1.000;T|0.000	Atlas-SNP
IFNW1	3467	hgsc.bcm.edu	hg19	9	21141286	21141286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	IFNW1	NM_002177	exon1	c.G284T	p.R95L	GAGGAGCGCTCTG	.	30.0	9.0	113.0	0.0	.	20	.	.	Atlas-SNP
NOL6	65083	hgsc.bcm.edu	hg19	9	33468831	33468831	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	NOL6	NM_022917	exon8	c.G1066C	p.V356L	AGACAACCAGCAT	.	63.0	22.0	114.0	0.0	.	85	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7285628	7285628	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SFMBT2	NM_001029880	exon9	c.C1012T	p.L338L	GTCTTAGGTCATC	.	104.0	11.0	93.0	0.0	.	209	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13212934	13212934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MCM10	NM_182751	exon3	c.A20G	p.N7S	AAGACAATCTGTC	.	247.0	127.0	168.0	0.0	.	76	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37505198	37505198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	ANKRD30A_ENST00000602533,NS,carcinoma,-1,1	ANKRD30A	NM_052997	exon32	c.G2791C	p.G931R	CGTACAGGAAAAA	.	576.0	57.0	475.0	0.0	.	448	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85955343	85955343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CDHR1	NM_001171971	exon2	c.T149C	p.V50A	CCCCTGTAGGTGA	.	66.0	17.0	96.0	0.0	.	122	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135025036	135025036	+	Missense_Mutation	SNP	G	G	T	rs151235501	alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KNDC1	NM_152643	exon22	c.G4019T	p.G1340V	ACAGCGGGCTGCT	.	65.0	23.0	74.0	0.0	.	155	.	G|1.000;A|0.000	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5154891	5154891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KCNA5	NM_002234	exon1	c.A1578T	p.E526D	CCGGGAAACGGAT	.	64.0	14.0	114.0	0.0	.	138	.	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	hg19	12	48135289	48135289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RAPGEF3	NM_001098531	exon19	c.T1922C	p.L641P	CCTACCAGCTCAT	.	143.0	30.0	141.0	0.0	.	98	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80732951	80732951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OTOGL	NM_173591	exon42	c.G4930A	p.G1644R	CCAGCTGGACTAA	.	105.0	14.0	186.0	0.0	.	235	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109637260	109637260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ACACB	NM_001093	exon17	c.C2681T	p.P894L	ACGATCCTACAGT	.	83.0	15.0	91.0	0.0	.	330	.	.	Atlas-SNP
HPD	3242	hgsc.bcm.edu	hg19	12	122284995	122284995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	HPD	NM_002150	exon10	c.A722G	p.N241S	GGCTCATTGATGG	.	105.0	14.0	125.0	0.0	.	46	.	.	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	hg19	13	25459431	25459431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CENPJ	NM_018451	exon13	c.A3460T	p.S1154C	GATGACTGATTTC	.	115.0	31.0	258.0	0.0	.	116	.	.	Atlas-SNP
TTC5	91875	hgsc.bcm.edu	hg19	14	20763925	20763925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TTC5	NM_138376	exon7	c.A785G	p.Q262R	TCTCGTTGCCGGG	.	106.0	18.0	138.0	0.0	.	34	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23851737	23851737	+	Missense_Mutation	SNP	C	C	A	rs61731171	bycluster;alternate_allele	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	MYH6,NS,carcinoma,0,1	MYH6	NM_002471	exon38	c.G5696T	p.R1899L	ACCTTGCGGAACT	.	132.0	26.0	199.0	0.0	.	274	.	C|0.986;T|0.014	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94052959	94052959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	UNC79,NS,carcinoma,0,2	UNC79	NM_020818	exon21	c.G2290A	p.E764K	GATACCGAAAGAA	.	69.0	19.0	208.0	0.0	.	366	.	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	hg19	14	104488538	104488538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TDRD9	NM_153046	exon24	c.C2477T	p.T826I	TTAAAACCCTTCC	.	123.0	39.0	268.0	0.0	.	175	.	.	Atlas-SNP
GABRA5	2558	hgsc.bcm.edu	hg19	15	27114447	27114447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	GABRA5,NS,carcinoma,0,1	GABRA5	NM_001165037	exon3	c.T52G	p.F18V	CTTCTCTTTTGTA	.	234.0	48.0	409.0	1.0	.	127	.	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31295063	31295063	+	Silent	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TRPM1	NM_001252020	exon27	c.T3891G	p.L1297L	CCGGAGAAGATAC	.	82.0	17.0	138.0	0.0	.	183	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34105063	34105063	+	Splice_Site	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RYR3	NM_001243996	exon72	c.10243-1G>C	.	TTTTCAGTCTGAT	.	56.0	11.0	87.0	0.0	.	760	.	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41377743	41377743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	INO80	NM_017553	exon7	c.G697A	p.E233K	GTTCTTCATCTCT	.	315.0	62.0	548.0	0.0	.	122	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75968322	75968322	+	Missense_Mutation	SNP	C	C	T	rs370893364		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CSPG4	NM_001897	exon10	c.G6538A	p.E2180K	CGGCCTCGGGGAC	.	33.0	12.0	23.0	0.0	.	175	.	.	Atlas-SNP
RPL13	6137	hgsc.bcm.edu	hg19	16	89629361	89629361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	RPL13	NM_000977	exon6	c.C547T	p.R183C	AGTCTCCGTATGG	.	120.0	13.0	165.0	0.0	.	11	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578524	7578524	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	TP53_ENST00000545858,NS,carcinoma,0,4	TP53	NM_000546	exon5	c.C406T	p.Q136X	CCAGTTGGCAAAA	.	35.0	21.0	48.0	0.0	.	33396	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	hg19	17	12666487	12666487	+	Silent	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYOCD	NM_001146312	exon14	c.C2487T	p.P829P	CAAGCCCTCGGCT	.	56.0	34.0	121.0	0.0	.	291	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27449219	27449219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MYO18A	NM_078471	exon3	c.A1052C	p.K351T	CACACCTTCTCCG	.	126.0	74.0	262.0	0.0	.	217	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38189358	38189358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MED24	NM_014815	exon8	c.G773A	p.G258D	GTCTCGCCTGTCA	.	37.0	18.0	87.0	0.0	.	89	.	.	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	hg19	17	56582147	56582147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MTMR4	NM_004687	exon12	c.C1292T	p.T431M	TCCAACGTCCTGT	.	47.0	12.0	81.0	0.0	.	91	.	.	Atlas-SNP
METTL2A	339175	hgsc.bcm.edu	hg19	17	60501620	60501620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	METTL2A	NM_181725	exon2	c.G151A	p.E51K	GCGGCGGAGAGAA	.	76.0	20.0	127.0	0.0	.	31	.	.	Atlas-SNP
ENPP7	339221	hgsc.bcm.edu	hg19	17	77711821	77711821	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ENPP7	NM_178543	exon5	c.G1353A	p.V451V	GACCGTGATTCTT	.	38.0	16.0	43.0	0.0	.	63	.	.	Atlas-SNP
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992724	67992724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SOCS6	NM_004232	exon2	c.G820C	p.V274L	GACCTAGTTGTCG	.	164.0	55.0	279.0	0.0	.	54	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	756999	756999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C19orf21	NM_173481	exon2	c.G53C	p.G18A	ACCGTGGCACCGG	.	116.0	15.0	113.0	0.0	.	56	.	.	Atlas-SNP
PCSK4	54760	hgsc.bcm.edu	hg19	19	1484101	1484101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PCSK4	NM_017573	exon9	c.G1094A	p.C365Y	TCTGTGCACCCGT	.	128.0	71.0	68.0	0.0	.	44	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11143994	11143994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	SMARCA4_ENST00000358026,NS,carcinoma,+1,2	SMARCA4	NM_003072	exon26	c.G3575A	p.R1192H	CCCACCGCATCGG	.	77.0	15.0	90.0	0.0	.	502	.	.	Atlas-SNP
C19orf80	55908	hgsc.bcm.edu	hg19	19	11350899	11350899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C19orf80	NM_018687	exon2	c.G386T	p.S129I	GGGACAGCGTGCA	.	65.0	26.0	89.0	0.0	.	8	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41073984	41073984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SPTBN4	NM_020971	exon31	c.G6752A	p.R2251Q	CTGAGCGGCAAGA	.	50.0	15.0	41.0	0.0	.	213	.	.	Atlas-SNP
PSG11	5680	hgsc.bcm.edu	hg19	19	43529064	43529064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PSG11	NM_002785	exon2	c.G209A	p.G70E	ATTTGCCCTTTGT	.	203.0	27.0	250.0	0.0	.	57	.	.	Atlas-SNP
PSG9	5678	hgsc.bcm.edu	hg19	19	43763032	43763032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PSG9	NM_002784	exon4	c.A965C	p.N322T	ACTGGGTTACTGC	.	124.0	29.0	96.0	0.0	.	77	.	.	Atlas-SNP
LMTK3	114783	hgsc.bcm.edu	hg19	19	49013717	49013717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	LMTK3	NM_001080434	exon3	c.A296C	p.K99T	CTCACCTTGAAGC	.	125.0	19.0	143.0	0.0	.	125	.	.	Atlas-SNP
TFPT	29844	hgsc.bcm.edu	hg19	19	54611472	54611472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TFPT	NM_013342	exon5	c.C503T	p.P168L	CTGGGCGGGGACA	.	93.0	16.0	106.0	0.0	.	17	.	.	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	hg19	20	1629885	1629885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SIRPG	NM_001039508	exon2	c.A243C	p.K81N	GCCTTCTTTTTGA	.	816.0	294.0	1118.0	2.0	.	61	.	.	Atlas-SNP
C20orf27	54976	hgsc.bcm.edu	hg19	20	3735113	3735113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	C20orf27	NM_001039140	exon5	c.G430A	p.E144K	GTATCTCCTCTTT	.	83.0	30.0	61.0	0.0	.	17	.	.	Atlas-SNP
RTFDC1	51507	hgsc.bcm.edu	hg19	20	55048453	55048453	+	Splice_Site	SNP	T	T	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_016407	exon2	c.164+2T>A	.	GGCAGGTATGGTT	.	48.0	11.0	84.0	0.0	.	.	.	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	hg19	21	34022586	34022586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SYNJ1	NM_203446	exon23	c.G3062A	p.S1021N	TCTAAACTCATTT	.	237.0	77.0	406.0	0.0	.	253	.	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18358243	18358243	+	Silent	SNP	G	G	A	rs201286172		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	MICAL3	NM_001136004	exon19	c.C2475T	p.P825P	AGAGGCGGGGCGG	.	59.0	12.0	73.0	0.0	.	53	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42606748	42606748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	TCF20	NM_181492	exon1	c.T4564A	p.S1522T	TCGGTGAAATCGT	.	323.0	22.0	352.0	0.0	.	164	.	.	Atlas-SNP
SCML2	10389	hgsc.bcm.edu	hg19	X	18283818	18283818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SCML2	NM_006089	exon8	c.C835G	p.Q279E	TGACCTGCTGTGT	.	290.0	62.0	461.0	0.0	.	81	.	.	Atlas-SNP
PHKA2	5256	hgsc.bcm.edu	hg19	X	18972509	18972509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PHKA2	NM_000292	exon2	c.T100G	p.S34A	TGGCTGACAGCAG	.	60.0	14.0	95.0	0.0	.	122	.	.	Atlas-SNP
PRICKLE3	4007	hgsc.bcm.edu	hg19	X	49032070	49032070	+	Silent	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PRICKLE3	NM_006150	exon9	c.C1800T	p.R600R	CCCTGCGCGAGAG	.	94.0	19.0	102.0	0.0	.	59	.	.	Atlas-SNP
SSX7	280658	hgsc.bcm.edu	hg19	X	52677345	52677345	+	Silent	SNP	T	T	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	SSX7	NM_173358	exon6	c.A432G	p.K144K	ACTTGGTTTTCCT	.	1049.0	178.0	1399.0	1.0	.	34	.	.	Atlas-SNP
KLF8	11279	hgsc.bcm.edu	hg19	X	56291629	56291629	+	Missense_Mutation	SNP	G	G	A	rs144407506	bycluster	TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	KLF8	NM_001159296	exon4	c.G98A	p.R33Q	CTGTTCGGAACAG	.	108.0	17.0	175.0	0.0	.	38	.	G|1.000;A|0.000	Atlas-SNP
ABCD1	215	hgsc.bcm.edu	hg19	X	153001604	153001604	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ABCD1	NM_000033	exon3	c.G1120C	p.E374Q	AAGAAGGAGGAGG	.	129.0	29.0	193.0	0.0	.	59	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13718	13718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	ENST00000361567	exon1	c.G1382A	p.S461N	CCGGAAGCCTATT	.	78.0	26.0	624.0	1.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14607	14607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	ENST00000361681	exon1	c.C67T	p.P23S	GAGAAGGCTTAGA	.	175.0	11.0	1100.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15357	15357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	ENST00000361789	exon1	c.G611A	p.G204E	AAACGGGATCAAA	.	94.0	53.0	714.0	1.0	.	.	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52436687	52436688	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	BAP1,bladder,carcinoma,0,1	BAP1	NM_004656	exon16	c.1987_1988insT	p.D663_D664delinsX	.	.	89.0	65.0	226.0	0.0	.	371	.	.	Atlas-Indel,Pindel
GAB2	9846	hgsc.bcm.edu	hg19	11	77937959	77937960	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	GAB2	NM_080491	exon4	c.759_760insA	p.K253fs	.	.	77.0	13.0	123.0	0.0	.	63	.	.	Atlas-INDEL
COMMD3-BMI1	0	hgsc.bcm.edu	hg19	10	22606865	22606866	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	.	NM_001204062	exon2	c.192_193insG	p.A64fs	.	.	368.0	63.0	305.0	0.0	.	.	.	.	Atlas-Indel,Pindel
PREX1	57580	hgsc.bcm.edu	hg19	20	47307517	47307518	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	PREX1	NM_020820	exon9	c.1154_1155insG	p.D385fs	.	.	161.0	10.0	185.0	0.0	.	441	.	.	Atlas-INDEL
REXO1	57455	hgsc.bcm.edu	hg19	19	1828274	1828275	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	REXO1	NM_020695	exon2	c.514_515insC	p.A172fs	.	.	51.0	11.0	58.0	0.0	.	55	.	.	Atlas-INDEL
DHX36	170506	hgsc.bcm.edu	hg19	3	154042059	154042060	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	DHX36	NM_020865	exon1	c.147_148insG	p.G49fs	.	.	244.0	15.0	223.0	0.0	.	98	.	.	Atlas-INDEL
ATP9B	374868	hgsc.bcm.edu	hg19	18	77108133	77108134	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	ATP9B	NM_198531	exon25	c.2840_2841insTG	p.A947fs	.	.	242.0	63.0	392.0	0.0	.	96	.	.	Atlas-Indel,Pindel
OTOP1	133060	hgsc.bcm.edu	hg19	4	4199089	4199090	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	OTOP1	NM_177998	exon5	c.1472_1473insC	p.Q491fs	.	.	157.0	13.0	219.0	0.0	.	118	.	.	Atlas-INDEL
CPXM1	56265	hgsc.bcm.edu	hg19	20	2776314	2776315	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	CPXM1	NM_019609	exon11	c.1651_1652insC	p.C551fs	.	.	137.0	13.0	123.0	0.0	.	107	.	.	Atlas-INDEL
LARP4B	23185	hgsc.bcm.edu	hg19	10	858938	858939	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.,1	LARP4B	NM_015155	exon18	c.2145_2146insG	p.G715fs	.	.	129.0	12.0	66.0	0.0	.	110	.	.	Atlas-INDEL
LGALS14	56891	hgsc.bcm.edu	hg19	19	40196577	40196757	+	Frame_Shift_Del	DEL	CAAGTACTGGGGCTGTGCTGTCAGTAATGTGTGCCGCTTCTGGGAAGGACGTCCATTGCCCTTGATGATTGTGGTGCGTGTACATCCCACACACAGGGGTTTCCTGTTCTTTCGTCATTTCCCTTTCTCTTTCAACAAGTGTTGTTTCTCACTGGAGTGAATTTTTAAATTCTTTCACCCT	CAAGTACTGGGGCTGTGCTGTCAGTAATGTGTGCCGCTTCTGGGAAGGACGTCCATTGCCCTTGATGATTGTGGTGCGTGTACATCCCACACACAGGGGTTTCCTGTTCTTTCGTCATTTCCCTTTCTCTTTCAACAAGTGTTGTTTCTCACTGGAGTGAATTTTTAAATTCTTTCACCCT	-	novel		TCGA-BC-A10R-01A-11D-A12Z-10	TCGA-BC-A10R-11A-11D-A12Z-10	CAAGTACTGGGGCTGTGCTGTCAGTAATGTGTGCCGCTTCTGGGAAGGACGTCCATTGCCCTTGATGATTGTGGTGCGTGTACATCCCACACACAGGGGTTTCCTGTTCTTTCGTCATTTCCCTTTCTCTTTCAACAAGTGTTGTTTCTCACTGGAGTGAATTTTTAAATTCTTTCACCCT	CAAGTACTGGGGCTGTGCTGTCAGTAATGTGTGCCGCTTCTGGGAAGGACGTCCATTGCCCTTGATGATTGTGGTGCGTGTACATCCCACACACAGGGGTTTCCTGTTCTTTCGTCATTTCCCTTTCTCTTTCAACAAGTGTTGTTTCTCACTGGAGTGAATTTTTAAATTCTTTCACCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e98ae9b4-4696-4b17-a6ed-b072d679ba40	a458c859-a526-4bd8-a5ff-ed71b5ce571b	.	LGALS14	NM_203471	exon2	c.29_102del	p.10_34del	.	.	106.0	10.0	171.0	0.0	.	38	.	.	Pindel
