Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SPTA1	6708	hgsc.bcm.edu	hg19	1	158651408	158651408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SPTA1	NM_003126	exon4	c.C440T	p.T147I	TCCAGGGTCAGCT	.	224.0	16.0	281.0	0.0	.	720	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214557735	214557735	+	Missense_Mutation	SNP	G	G	T	rs144475962	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	PTPN14,NS,malignant_melanoma,0,1	PTPN14	NM_005401	exon13	c.C1463A	p.P488Q	ATCTCCGGTTGGC	.	329.0	23.0	392.0	1.0	.	168	.	G|0.999;A|0.001	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	hg19	1	223568584	223568584	+	Silent	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C1orf65	NM_152610	exon1	c.C1767T	p.L589L	GAAGCTCCCTCAG	.	115.0	9.0	138.0	0.0	.	71	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228495849	228495849	+	Silent	SNP	G	G	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OBSCN	NM_001271223	exon58	c.G15375T	p.A5125A	TGATGCGGAGGTG	.	129.0	9.0	168.0	0.0	.	2142	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71658550	71658550	+	Missense_Mutation	SNP	T	T	G	rs201989581	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ZNF638	NM_014497	exon26	c.T5744G	p.V1915G	CTGATGTCCCTGA	.	292.0	12.0	404.0	0.0	.	179	.	T|0.999;C|0.001	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232325420	232325420	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCL	NM_005381	exon4	c.T771A	p.D257E	TTCATCATCATCA	.	322.0	41.0	258.0	0.0	.	80	.	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232325423	232325423	+	Missense_Mutation	SNP	A	A	T	rs375194579	alternate_allele	TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	NCL	NM_005381	exon4	c.T768A	p.D256E	ATCATCATCATCT	.	384.0	36.0	473.0	0.0	.	80	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234394446	234394446	+	Silent	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	USP40	NM_018218	exon28	c.C3408T	p.P1136P	CTTTTCGGGAAAG	.	335.0	21.0	438.0	0.0	.	174	.	.	Atlas-SNP
IFT57	55081	hgsc.bcm.edu	hg19	3	107937444	107937444	+	Silent	SNP	T	T	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT57	NM_018010	exon3	c.A432G	p.V144V	ATAGCATACATGT	.	307.0	13.0	393.0	0.0	.	44	.	.	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148886196	148886196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARHGAP10	NM_024605	exon17	c.G1472A	p.R491H	AATCTCGTGTTAA	.	466.0	23.0	561.0	0.0	.	92	.	.	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	hg19	5	64976616	64976616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SGTB	NM_019072	exon7	c.C485T	p.A162V	GTGAGGGCCAGCC	.	136.0	9.0	182.0	0.0	.	22	.	.	Atlas-SNP
C6orf106	64771	hgsc.bcm.edu	hg19	6	34574641	34574641	+	Silent	SNP	A	A	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	C6orf106	NM_024294	exon4	c.T552G	p.L184L	TCCTAAAAGTCCA	.	67.0	8.0	91.0	0.0	.	29	.	.	Atlas-SNP
GJB7	375519	hgsc.bcm.edu	hg19	6	87994213	87994213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GJB7	NM_198568	exon3	c.G418A	p.V140I	ATAAAACAAGGAA	.	79.0	16.0	99.0	0.0	.	28	.	.	Atlas-SNP
GUSB	2990	hgsc.bcm.edu	hg19	7	65440043	65440043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	GUSB	NM_000181	exon6	c.C928T	p.Q310X	ACGTCTGTGCAGT	.	68.0	9.0	80.0	0.0	.	52	.	.	Atlas-SNP
LRRCC1	85444	hgsc.bcm.edu	hg19	8	86057622	86057622	+	Splice_Site	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	LRRCC1_ENST00000414626,NS,carcinoma,0,2	LRRCC1	NM_033402	exon19	c.2977-2A>T	.	CGATTTAGGTCCA	.	438.0	27.0	463.0	2.0	.	212	.	.	Atlas-SNP
CTHRC1	115908	hgsc.bcm.edu	hg19	8	104388131	104388131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	CTHRC1	NM_138455	exon2	c.T316A	p.Y106N	CCCAACTACAAGC	.	143.0	8.0	147.0	0.0	.	29	.	.	Atlas-SNP
ABRA	137735	hgsc.bcm.edu	hg19	8	107782232	107782232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	ABRA,NS,carcinoma,0,1	ABRA	NM_139166	exon1	c.C187G	p.P63A	GTTTAGGAGCTTG	.	354.0	32.0	573.0	0.0	.	57	.	.	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	hg19	9	127561615	127561615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	OLFML2A	NM_182487	exon4	c.C514A	p.R172S	AGCGTGCGCCACC	.	125.0	10.0	159.0	0.0	.	61	.	.	Atlas-SNP
HIF1A	3091	hgsc.bcm.edu	hg19	14	62207716	62207716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HIF1A	NM_001243084	exon12	c.A1975T	p.I659F	GAAGACATTAAAA	.	159.0	9.0	235.0	0.0	.	120	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105419292	105419292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	AHNAK2	NM_138420	exon7	c.G2496T	p.K832N	TTTGAACTTGCTG	.	228.0	13.0	323.0	0.0	.	719	.	.	Atlas-SNP
URI1	8725	hgsc.bcm.edu	hg19	19	30476164	30476164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_003796	exon3	c.G187A	p.E63K	CTTCGAGAAAGAC	.	263.0	15.0	359.0	0.0	.	.	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34925206	34925206	+	Silent	SNP	T	T	A	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SON	NM_032195	exon3	c.T3669A	p.P1223P	GGAGCCTTCAGCA	.	237.0	14.0	282.0	0.0	.	343	.	.	Atlas-SNP
HMGB3	3149	hgsc.bcm.edu	hg19	X	150155724	150155724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	HMGB3	NM_005342	exon4	c.A414T	p.E138D	CAGTGAAAAGCAG	.	158.0	11.0	219.0	0.0	.	27	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76018525	76018526	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	FILIP1	NM_015687	exon6	c.3524_3525insG	p.A1175fs	.	.	214.0	17.0	455.0	0.0	.	173	.	.	Atlas-INDEL
ARFGAP2	84364	hgsc.bcm.edu	hg19	11	47187860	47187861	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARFGAP2	NM_032389	exon15	c.1504_1505insG	p.K502fs	.	.	121.0	16.0	210.0	0.0	.	43	.	.	Atlas-INDEL
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57077359	57077360	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TNKS1BP1	NM_033396	exon6	c.2826_2827insG	p.S942fs	.	.	118.0	10.0	158.0	0.0	.	148	.	.	Atlas-INDEL
SMARCC1	6599	hgsc.bcm.edu	hg19	3	47629720	47629721	+	Frame_Shift_Ins	INS	-	-	G	rs35867350		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SMARCC1	NM_003074	exon28	c.3297_3298insC	p.P1099fs	.	.	116.0	11.0	151.0	0.0	.	85	.	.	Atlas-INDEL
ZNF233	353355	hgsc.bcm.edu	hg19	19	44778797	44778797	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.,8	ZNF233	NM_001207005	exon5	c.1983delG	p.S661fs	.	.	88.0	81.0	109.0	0.0	.	73	.	.	Atlas-INDEL
COL17A1	1308	hgsc.bcm.edu	hg19	10	105837253	105837254	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	COL17A1	NM_000494	exon4	c.129_130insC	p.T43fs	.	.	101.0	10.0	144.0	0.0	.	149	.	.	Atlas-INDEL
TENM2	57451	hgsc.bcm.edu	hg19	5	167645298	167645299	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	.	NM_001122679	exon23	c.4375_4376insT	p.L1459fs	.	.	115.0	12.0	174.0	0.0	.	.	.	.	Atlas-INDEL
SUMF2	25870	hgsc.bcm.edu	hg19	7	56144554	56144555	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	SUMF2	NM_015411	exon6	c.620_621insC	p.F207fs	.	.	140.0	10.0	207.0	0.0	.	56	.	.	Atlas-INDEL
IFT88	8100	hgsc.bcm.edu	hg19	13	21219024	21219025	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	IFT88	NM_175605	exon22	c.1903_1904insT	p.L635fs	.	.	279.0	17.0	300.0	0.0	.	83	.	.	Atlas-INDEL
KRTAP19-8	728299	hgsc.bcm.edu	hg19	21	32410712	32410713	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	KRTAP19-8	NM_001099219	exon1	c.51_52insG	p.G17fs	.	.	134.0	10.0	216.0	0.0	.	9	.	.	Atlas-INDEL
MSH5	4439	hgsc.bcm.edu	hg19	6	31729664	31729665	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	MSH5	NM_172165	exon23	c.2254_2255insC	p.A752fs	.	.	169.0	11.0	224.0	0.0	.	108	.	.	Atlas-INDEL
ARAP1	116985	hgsc.bcm.edu	hg19	11	72407643	72407644	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	ARAP1	NM_001040118	exon23	c.3223_3224insG	p.P1075fs	.	.	54.0	10.0	109.0	0.0	.	168	.	.	Atlas-INDEL
PKP1	5317	hgsc.bcm.edu	hg19	1	201293599	201293600	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.,2	PKP1	NM_000299	exon11	c.1787_1788insC	p.G596fs	.	.	78.0	10.0	106.0	0.0	.	127	.	.	Atlas-INDEL
TLN1	7094	hgsc.bcm.edu	hg19	9	35725253	35725254	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BC-A110-01A-11D-A12Z-10	TCGA-BC-A110-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7df1cd46-d00e-474c-9815-b41edb5ccf20	10045d1f-6bbd-4855-878e-90705d76e6f8	.	TLN1	NM_006289	exon3	c.196_197insG	p.K66fs	.	.	136.0	12.0	175.0	0.0	.	185	.	.	Atlas-INDEL
