Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DNAJB4	11080	hgsc.bcm.edu	hg19	1	78479088	78479088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DNAJB4	NM_007034	exon2	c.G565A	p.D189N	AACGCTGATGGAA	.	108.0	46.0	59.0	0.0	.	30	.	.	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156618360	156618360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	BCAN	NM_198427	exon6	c.G770C	p.G257A	ACCCAGGAGAACT	.	85.0	32.0	75.0	0.0	.	174	.	.	Atlas-SNP
CD244	51744	hgsc.bcm.edu	hg19	1	160801203	160801203	+	Missense_Mutation	SNP	T	T	G	rs146201991	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CD244	NM_001166663	exon9	c.A1047C	p.Q349H	TTTAGGTTGACTC	.	115.0	17.0	74.0	0.0	.	77	.	T|1.000;C|0.000	Atlas-SNP
LRRN2	10446	hgsc.bcm.edu	hg19	1	204588961	204588961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRN2	NM_006338	exon3	c.G160T	p.D54Y	TGCAGTCCACAGT	.	83.0	36.0	80.0	0.0	.	81	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207739189	207739189	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CR1	NM_000651	exon24	c.A3873G	p.Q1291Q	ATTTCAATTAAAA	.	525.0	218.0	379.0	0.0	.	354	.	.	Atlas-SNP
SLC30A1	7779	hgsc.bcm.edu	hg19	1	211749145	211749145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC30A1	NM_021194	exon2	c.A1109T	p.H370L	AATTCATGAACTT	.	60.0	25.0	39.0	0.0	.	27	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216420124	216420124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USH2A	NM_007123	exon13	c.A2612T	p.K871I	CCTAATTTGCAAG	.	236.0	86.0	157.0	0.0	.	1168	.	.	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	hg19	2	39213099	39213099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SOS1	NM_005633	exon23	c.C3868T	p.P1290S	CAGGCGGCCCAGC	.	536.0	206.0	426.0	0.0	.	134	.	.	Atlas-SNP
GPR75	10936	hgsc.bcm.edu	hg19	2	54081699	54081699	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR75	NM_006794	exon2	c.G195A	p.L65L	GAAGGACAAGAAG	.	230.0	96.0	174.0	0.0	.	55	.	.	Atlas-SNP
NCKAP1	10787	hgsc.bcm.edu	hg19	2	183847561	183847561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP1	NM_205842	exon13	c.A1214G	p.D405G	ATAAAGTCGTCTG	.	208.0	93.0	109.0	0.0	.	105	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220354314	220354314	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEG	NM_005876	exon36	c.G8574A	p.A2858A	GCCAGCGGAGCCC	.	109.0	34.0	88.0	0.0	.	272	.	.	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	hg19	3	47453376	47453376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTPN23	NM_015466	exon21	c.A3992T	p.E1331V	ATGTGGAGCGCGT	.	226.0	93.0	169.0	0.0	.	85	.	.	Atlas-SNP
USP19	10869	hgsc.bcm.edu	hg19	3	49153563	49153563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	USP19	NM_001199160	exon10	c.G1388A	p.C463Y	GTGAAACAGAAGG	.	177.0	80.0	100.0	0.0	.	158	.	.	Atlas-SNP
TF	7018	hgsc.bcm.edu	hg19	3	133476713	133476713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.,3	TF	NM_001063	exon8	c.T971C	p.V324A	TAAAAGTCCCCCC	.	151.0	52.0	100.0	0.0	.	116	.	.	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	hg19	3	196509495	196509495	+	Splice_Site	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PAK2	.	.	.	.	AATTCCAGGCCAT	.	124.0	6.0	80.0	0.0	.	113	.	.	Atlas-SNP
G3BP2	9908	hgsc.bcm.edu	hg19	4	76579227	76579227	+	Silent	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	G3BP2	NM_012297	exon8	c.T765G	p.P255P	ACTAGGAGGCAGG	.	43.0	29.0	57.0	0.0	.	52	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85711036	85711036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDFY3	NM_014991	exon22	c.C3512T	p.S1171L	TAAAATGAGGACT	.	113.0	82.0	139.0	1.0	.	314	.	.	Atlas-SNP
MAD2L1	4085	hgsc.bcm.edu	hg19	4	120982128	120982128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAD2L1	NM_002358	exon4	c.C346A	p.P116T	CTCTGGGTGCACT	.	156.0	62.0	113.0	0.0	.	17	.	.	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	hg19	5	35793440	35793440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SPEF2	NM_024867	exon32	c.G4734T	p.M1578I	GTATATGCAGGTT	.	202.0	71.0	161.0	0.0	.	324	.	.	Atlas-SNP
SLC38A9	153129	hgsc.bcm.edu	hg19	5	54952566	54952566	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLC38A9	NM_173514	exon9	c.T734G	p.L245R	GTACTCAGTATAG	.	107.0	38.0	86.0	0.0	.	50	.	.	Atlas-SNP
CDKN1A	1026	hgsc.bcm.edu	hg19	6	36652024	36652024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	CDKN1A,bladder,carcinoma,0,2	CDKN1A	NM_001220778	exon2	c.G146T	p.W49L	AGCGATGGAACTT	.	78.0	44.0	32.0	0.0	.	27	.	.	Atlas-SNP
KLHL32	114792	hgsc.bcm.edu	hg19	6	97562045	97562045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KLHL32	NM_052904	exon7	c.C1014A	p.H338Q	GAGCCACCATTGT	.	81.0	25.0	43.0	0.0	.	85	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129571345	129571345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LAMA2	NM_000426	exon13	c.T1871C	p.M624T	AGCTTATGATTAT	.	97.0	60.0	53.0	0.0	.	481	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82784756	82784756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PCLO	NM_014510	exon2	c.C1201A	p.P401T	GAGCTGGAGTCTT	.	209.0	73.0	145.0	0.0	.	1506	.	.	Atlas-SNP
TAS2R41	259287	hgsc.bcm.edu	hg19	7	143175217	143175217	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAS2R41	NM_176883	exon1	c.C252T	p.F84F	ACAGTTCTTCCAT	.	91.0	11.0	81.0	0.0	.	43	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28971063	28971063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIF13B	NM_015254	exon32	c.C3847G	p.Q1283E	GACTCTGTGCAAA	.	60.0	19.0	30.0	0.0	.	192	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113668402	113668402	+	Silent	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSMD3	NM_198123	exon18	c.T2985C	p.G995G	CTTGAAACCATTA	.	115.0	37.0	72.0	0.0	.	2325	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141684416	141684416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PTK2	NM_005607	exon29	c.G2756A	p.S919N	TTGTAGCTGTCAG	.	76.0	29.0	75.0	0.0	.	311	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144808725	144808725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAM83H	NM_198488	exon5	c.T2906G	p.L969R	TGCCTAAGACGCA	.	59.0	24.0	34.0	0.0	.	68	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2039826	2039826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SMARCA2	NM_139045	exon4	c.C716A	p.P239Q	AGCAGCCGCAGCA	.	49.0	5.0	57.0	0.0	.	313	.	.	Atlas-SNP
LRRC19	64922	hgsc.bcm.edu	hg19	9	26995539	26995539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	LRRC19	NM_022901	exon5	c.G1093T	p.E365X	ATAATTCATGGAT	.	92.0	39.0	56.0	0.0	.	24	.	.	Atlas-SNP
C9orf85	138241	hgsc.bcm.edu	hg19	9	74586499	74586499	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C9orf85	NM_182505	exon3	c.C288T	p.C96C	AGTTTGCGCAAAA	.	65.0	33.0	48.0	0.0	.	28	.	.	Atlas-SNP
ORM1	5004	hgsc.bcm.edu	hg19	9	117086007	117086007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ORM1	NM_000607	exon2	c.A179T	p.Q60L	CGGTTCAGGAGAT	.	353.0	156.0	222.0	0.0	.	20	.	.	Atlas-SNP
ENG	2022	hgsc.bcm.edu	hg19	9	130587248	130587248	+	Silent	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ENG	NM_001114753	exon7	c.T822A	p.T274T	TTCTCCAGTGGTC	.	40.0	17.0	34.0	0.0	.	44	.	.	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88259978	88259978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WAPAL	NM_015045	exon3	c.G1022A	p.G341D	CTTACACCCCCTT	.	69.0	46.0	67.0	0.0	.	81	.	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	hg19	11	17418492	17418492	+	Missense_Mutation	SNP	C	C	A	rs138642224	bycluster;byfrequency;alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ABCC8	NM_000352	exon33	c.G4090T	p.V1364F	CATTGACGTGCTT	.	195.0	78.0	135.0	0.0	.	170	.	C|0.999;T|0.001	Atlas-SNP
AGBL2	79841	hgsc.bcm.edu	hg19	11	47712149	47712149	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AGBL2	NM_024783	exon10	c.G1110A	p.G370G	CTGCTGCCCATCA	.	216.0	97.0	157.0	0.0	.	73	.	.	Atlas-SNP
ADAMTS15	170689	hgsc.bcm.edu	hg19	11	130343256	130343256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS15	NM_139055	exon8	c.T2393G	p.F798C	ACTCCTTCTATCT	.	150.0	74.0	122.0	0.0	.	103	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2558277	2558277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CACNA1C	NM_001129831	exon4	c.G613T	p.V205L	GTGGTTGTGGGGT	.	97.0	60.0	118.0	0.0	.	1023	.	.	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14650961	14650961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ATF7IP	NM_018179	exon15	c.G3767T	p.C1256F	CTTTCTGTGATCC	.	56.0	38.0	85.0	0.0	.	136	.	.	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50190101	50190101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCKAP5L	NM_001037806	exon8	c.G1542C	p.E514D	CGCCCCCTCTGGG	.	126.0	52.0	85.0	0.0	.	142	.	.	Atlas-SNP
FAIM2	23017	hgsc.bcm.edu	hg19	12	50291319	50291319	+	Silent	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	FAIM2	NM_012306	exon4	c.G363A	p.V121V	GAGAGCCACGACA	.	178.0	69.0	136.0	0.0	.	32	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124915190	124915190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NCOR2	NM_006312	exon11	c.G1026T	p.K342N	GCGCTGCTTGCGG	.	85.0	43.0	63.0	0.0	.	475	.	.	Atlas-SNP
CYSLTR2	57105	hgsc.bcm.edu	hg19	13	49281716	49281716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CYSLTR2	NM_020377	exon1	c.A763G	p.I255V	TTGATCATCTTCT	.	49.0	15.0	25.0	0.0	.	55	.	.	Atlas-SNP
CLYBL	171425	hgsc.bcm.edu	hg19	13	100515304	100515304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CLYBL	NM_206808	exon4	c.A498C	p.L166F	GAATTTAATCCCT	.	65.0	20.0	38.0	0.0	.	48	.	.	Atlas-SNP
ING1	3621	hgsc.bcm.edu	hg19	13	111371870	111371870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ING1	NM_005537	exon2	c.A860G	p.K287R	CTGACAAGCCCAA	.	55.0	4.0	43.0	0.0	.	106	.	.	Atlas-SNP
PRKCH	5583	hgsc.bcm.edu	hg19	14	61909960	61909960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PRKCH	NM_006255	exon3	c.C559G	p.H187D	TGCTCTCACTGCA	.	133.0	71.0	85.0	0.0	.	89	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34109151	34109151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RYR3	NM_001036	exon75	c.G10591T	p.D3531Y	GTACAGGATTTGG	.	128.0	42.0	95.0	0.0	.	760	.	.	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	hg19	15	34640560	34640560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C15orf55	NM_175741	exon2	c.C407T	p.A136V	TGACAGCATCTAA	.	112.0	39.0	117.0	0.0	.	110	.	.	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	hg19	15	45440496	45440496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	DUOX1	NM_017434	exon22	c.G2669C	p.C890S	ACAACTGCCTGTC	.	147.0	68.0	126.0	0.0	.	125	.	.	Atlas-SNP
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81234212	81234212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KIAA1199	NM_018689	exon25	c.G3430T	p.A1144S	CTGAAAGCTCAGA	.	78.0	30.0	54.0	0.0	.	118	.	.	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	hg19	15	92459662	92459662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SLCO3A1	NM_013272	exon2	c.G620A	p.R207Q	ACGTGCGGAGGAA	.	122.0	50.0	109.0	0.0	.	84	.	.	Atlas-SNP
VWA3A	146177	hgsc.bcm.edu	hg19	16	22120822	22120822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	VWA3A	NM_173615	exon7	c.G503A	p.G168E	TCAAAGGGGCCAG	.	55.0	18.0	33.0	0.0	.	115	.	.	Atlas-SNP
PLK1	5347	hgsc.bcm.edu	hg19	16	23700573	23700573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	PLK1	NM_005030	exon8	c.G1285C	p.D429H	CTCTGTGATAACA	.	226.0	29.0	135.0	0.0	.	67	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74566050	74566050	+	Missense_Mutation	SNP	G	G	A	rs201232267		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GLG1	NM_001145667	exon2	c.C440T	p.P147L	TTTTCAGGCTAGA	.	147.0	6.0	103.0	0.0	.	106	.	.	Atlas-SNP
WDR59	79726	hgsc.bcm.edu	hg19	16	74943789	74943789	+	Silent	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	WDR59	NM_030581	exon15	c.A1416G	p.K472K	CTTCACTTTCTGC	.	203.0	95.0	123.0	0.0	.	66	.	.	Atlas-SNP
MON1B	22879	hgsc.bcm.edu	hg19	16	77228317	77228317	+	Silent	SNP	G	G	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MON1B	NM_014940	exon4	c.G561T	p.R187R	GCTGCGGGGGGAG	.	90.0	37.0	46.0	0.0	.	55	.	.	Atlas-SNP
SDR42E1	93517	hgsc.bcm.edu	hg19	16	82033315	82033315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SDR42E1	NM_145168	exon3	c.A583G	p.R195G	GGTGTCTTTGTTC	.	128.0	6.0	105.0	0.0	.	26	.	.	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26110007	26110007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	NOS2	NM_000625	exon6	c.C593T	p.P198L	CAGCGTGGGGCAT	.	318.0	116.0	233.0	0.0	.	113	.	.	Atlas-SNP
CISD3	284106	hgsc.bcm.edu	hg19	17	36889706	36889706	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CISD3	NM_001136498	exon4	c.T382G	p.X128G	CCACTCTGAGGGG	.	53.0	29.0	35.0	0.0	.	12	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62020305	62020305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	SCN4A	NM_000334	exon23	c.T4169C	p.M1390T	AAGATCATGTTGA	.	394.0	152.0	359.0	0.0	.	205	.	.	Atlas-SNP
GPR142	350383	hgsc.bcm.edu	hg19	17	72363763	72363763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPR142	NM_181790	exon1	c.C119T	p.S40F	TGGTGTCCCATGC	.	108.0	34.0	90.0	0.0	.	74	.	.	Atlas-SNP
RHBDF2	79651	hgsc.bcm.edu	hg19	17	74473344	74473344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	RHBDF2	NM_024599	exon8	c.T925A	p.S309T	GGGGGGACTCAAA	.	70.0	22.0	49.0	0.0	.	57	.	.	Atlas-SNP
MEX3C	51320	hgsc.bcm.edu	hg19	18	48723394	48723394	+	Silent	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MEX3C	NM_016626	exon1	c.G297T	p.G99G	CGGGGCCCCGGGC	.	14.0	7.0	12.0	0.0	.	77	.	.	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	hg19	19	12978549	12978549	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MAST1	NM_014975	exon20	c.G2324C	p.R775P	GCAAGCGATTCTC	.	55.0	13.0	41.0	0.0	.	214	.	.	Atlas-SNP
GPI	2821	hgsc.bcm.edu	hg19	19	34887542	34887542	+	Silent	SNP	C	C	A	rs373085760	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	GPI	NM_001184722	exon14	c.C1282A	p.R428R	CCCATACGGAAGG	.	109.0	32.0	74.0	0.0	.	63	.	.	Atlas-SNP
HIF3A	64344	hgsc.bcm.edu	hg19	19	46812017	46812017	+	Silent	SNP	G	G	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	HIF3A	NM_152795	exon5	c.G546A	p.K182K	CCTCAAGGCGGCC	.	67.0	22.0	43.0	0.0	.	154	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20177325	20177325	+	Missense_Mutation	SNP	C	C	T	rs142308308		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C20orf26	NM_015585	exon16	c.C1702T	p.R568W	ATTTTCCGGCACT	.	199.0	113.0	108.0	0.0	.	188	.	C|1.000;T|0.000	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	hg19	21	28211905	28211905	+	Splice_Site	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ADAMTS1	NM_006988	exon8	c.2028+1G>T	.	GAACTACCTTGGG	.	27.0	12.0	27.0	0.0	.	131	.	.	Atlas-SNP
KRTAP13-4	284827	hgsc.bcm.edu	hg19	21	31802993	31802993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	KRTAP13-4	NM_181600	exon1	c.C400A	p.P134T	TGCTACCCAAACT	.	193.0	92.0	127.0	0.0	.	46	.	.	Atlas-SNP
C21orf59	56683	hgsc.bcm.edu	hg19	21	33976524	33976524	+	Missense_Mutation	SNP	C	C	A	rs367724246	alternate_allele	TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C21orf59	NM_021254	exon4	c.G445T	p.A149S	TCACCGCGCCTCG	.	172.0	78.0	108.0	0.0	.	11	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70604840	70604840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TAF1	NM_004606	exon14	c.A2227G	p.T743A	GGGGAAACTGTTT	.	104.0	82.0	74.0	0.0	.	439	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	148037577	148037577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	AFF2	NM_002025	exon11	c.A2002G	p.R668G	CCACCAAGAGGCC	.	50.0	42.0	30.0	0.0	.	679	.	.	Atlas-SNP
ROCK1	6093	hgsc.bcm.edu	hg19	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	-	A	rs35810558		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.,1	ROCK1	NM_005406	exon4	c.363_364insT	p.F121fs	.	.	127.0	13.0	83.0	0.0	.	162	.	.	Atlas-INDEL
ZNF638	27332	hgsc.bcm.edu	hg19	2	71592562	71592563	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	ZNF638	NM_001252612	exon6	c.1721_1722insA	p.R574fs	.	.	65.0	23.0	31.0	0.0	.	179	.	.	Atlas-INDEL
TF	7018	hgsc.bcm.edu	hg19	3	133476711	133476712	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	TF	NM_001063	exon8	c.969_970insG	p.K323fs	.	.	153.0	54.0	99.0	0.0	.	116	.	.	Atlas-INDEL
PTEN	5728	hgsc.bcm.edu	hg19	10	89720811	89720812	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.,1	PTEN	NM_000314	exon8	c.962_963insA	p.T321fs	.	.	170.0	110.0	171.0	0.0	.	3652	.	.	Atlas-INDEL
ADPRM	56985	hgsc.bcm.edu	hg19	17	10614393	10614393	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	.	NM_020233	exon4	c.960delG	p.M320fs	.	.	63.0	39.0	66.0	0.0	.	.	.	.	Atlas-Indel,Pindel
CSNK2A1	1457	hgsc.bcm.edu	hg19	20	489179	489184	+	In_Frame_Del	DEL	GGCACG	GGCACG	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	GGCACG	GGCACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	CSNK2A1	NM_001895	exon2	c.13_18del	p.5_6del	.	.	199.0	37.0	141.0	0.0	.	36	.	.	Atlas-Indel,Pindel
C11orf35	256329	hgsc.bcm.edu	hg19	11	556881	556881	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	C11orf35	NM_173573	exon8	c.931delG	p.E311fs	.	.	37.0	13.0	25.0	0.0	.	22	.	.	Atlas-INDEL
MUSK	4593	hgsc.bcm.edu	hg19	9	113550088	113550088	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BD-A2L6-01A-11D-A20W-10	TCGA-BD-A2L6-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	45885dc7-e1ae-4db7-a384-59865f009277	c37989ed-705e-458e-a38d-819266a434f5	.	MUSK	NM_005592	exon13	c.1896delA	p.E632fs	.	.	124.0	52.0	89.0	0.0	.	112	.	.	Atlas-Indel,Pindel
