Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MFN2	9927	hgsc.bcm.edu	hg19	1	12069707	12069707	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MFN2	NM_014874	exon18	c.C2128G	p.L710V	GAGAACCTGGAGC	.	95.0	13.0	182.0	0.0	.	83	.	.	Atlas-SNP
PLA2G2F	64600	hgsc.bcm.edu	hg19	1	20474797	20474797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PLA2G2F	NM_022819	exon5	c.A539G	p.Y180C	ATGTCTACTGCCA	.	119.0	40.0	318.0	0.0	.	28	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35857909	35857909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZMYM4	NM_005095	exon16	c.C2684A	p.A895D	CAAGTGCCCCTGC	.	226.0	95.0	225.0	0.0	.	143	.	.	Atlas-SNP
GJA9	81025	hgsc.bcm.edu	hg19	1	39340262	39340262	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GJA9	NM_030772	exon2	c.T1509C	p.N503N	AATGAGATTGTTC	.	142.0	62.0	133.0	0.0	.	55	.	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	hg19	1	60505838	60505838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C1orf87	NM_152377	exon5	c.C498A	p.S166R	ACTTGGGCTCTGG	.	87.0	44.0	56.0	0.0	.	55	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62267337	62267337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	INADL	NM_176877	exon12	c.C1445G	p.T482S	TTCTAACTGGAGC	.	261.0	47.0	194.0	0.0	.	179	.	.	Atlas-SNP
CACHD1	57685	hgsc.bcm.edu	hg19	1	65139104	65139104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CACHD1	NM_020925	exon19	c.A2531G	p.D844G	TCAGTGACAGAAC	.	169.0	18.0	166.0	0.0	.	125	.	.	Atlas-SNP
SETDB1	9869	hgsc.bcm.edu	hg19	1	150900277	150900277	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SETDB1	NM_012432	exon2	c.G87A	p.V29V	GGCAGTGGTTGAG	.	378.0	32.0	322.0	0.0	.	204	.	.	Atlas-SNP
COLGALT2	23127	hgsc.bcm.edu	hg19	1	183942845	183942845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_015101	exon4	c.C532T	p.L178F	GATTGAGGGTCTG	.	79.0	7.0	69.0	0.0	.	.	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207791472	207791472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CR1	NM_000651	exon42	c.C6946A	p.L2316I	GTATCTCTATATC	.	212.0	87.0	293.0	0.0	.	354	.	.	Atlas-SNP
PRADC1	84279	hgsc.bcm.edu	hg19	2	73456048	73456048	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PRADC1	NM_032319	exon4	c.C321T	p.H107H	CCCGCCGTGCTCC	.	28.0	10.0	120.0	0.0	.	15	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141055500	141055500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRP1B	NM_018557	exon84	c.C12844A	p.P4282T	AGTTTGGCCCAGT	.	257.0	24.0	361.0	0.0	.	1315	.	.	Atlas-SNP
TBR1	10716	hgsc.bcm.edu	hg19	2	162276744	162276744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TBR1	NM_006593	exon5	c.A1166T	p.K389I	TTGCAAAAGGATT	.	127.0	70.0	130.0	0.0	.	59	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162807235	162807235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC4A10	NM_001178015	exon19	c.A2418T	p.L806F	GCCTTTAGGTCCA	.	167.0	32.0	160.0	0.0	.	309	.	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166223741	166223741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SCN2A	NM_001040143	exon18	c.T3535C	p.F1179L	CGGAAGTTCAAGT	.	84.0	4.0	119.0	0.0	.	589	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168105466	168105466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	XIRP2,NS,carcinoma,0,1	XIRP2	NM_152381	exon9	c.C7564A	p.H2522N	AAATCTCATTCAT	.	93.0	49.0	95.0	0.0	.	914	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179404631	179404631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	TTN_ENST00000359218,NS,carcinoma,0,4	TTN	NM_001267550	exon352	c.G98161A	p.V32721I	TGATGACGCCACC	.	127.0	55.0	172.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179596523	179596523	+	Silent	SNP	G	G	A	rs372588069	alternate_allele	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TTN	NM_001267550	exon58	c.C17079T	p.S5693S	CTGCAGGCTAACC	.	111.0	24.0	134.0	0.0	.	18412	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179718305	179718305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	CCDC141_ENST00000420890,mucosal,malignant_melanoma,0,4	CCDC141	NM_173648	exon20	c.G3107A	p.G1036E	TATTTTCCAACTC	.	57.0	12.0	50.0	0.0	.	362	.	.	Atlas-SNP
SGOL2	151246	hgsc.bcm.edu	hg19	2	201437093	201437093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	SGOL2,NS,carcinoma,0,1	SGOL2	NM_001160046	exon7	c.G2024A	p.R675K	CTACTAGAGATAA	.	162.0	16.0	181.0	1.0	.	126	.	.	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	hg19	2	207527925	207527925	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DYTN	NM_001093730	exon11	c.T1335C	p.N445N	CTCTGCATTTGTG	.	165.0	44.0	229.0	0.0	.	168	.	.	Atlas-SNP
SPAG16	79582	hgsc.bcm.edu	hg19	2	214727353	214727353	+	Splice_Site	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SPAG16	NM_024532	exon11	c.1214+1G>T	.	TCCCAGGTCAGTG	.	85.0	11.0	160.0	0.0	.	134	.	.	Atlas-SNP
CYP27A1	1593	hgsc.bcm.edu	hg19	2	219679131	219679131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYP27A1	NM_000784	exon7	c.C1213T	p.R405W	AACTCCCGGATCA	.	84.0	11.0	137.0	0.0	.	52	.	.	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	56183107	56183107	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ERC2	NM_015576	exon5	c.C1203T	p.I401I	CATCTGGATCTCA	.	173.0	60.0	179.0	0.0	.	221	.	.	Atlas-SNP
LSAMP	4045	hgsc.bcm.edu	hg19	3	115805264	115805264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LSAMP	NM_002338	exon2	c.C295G	p.Q99E	CCTTCTGGATTCG	.	270.0	105.0	321.0	0.0	.	62	.	.	Atlas-SNP
ADPRH	141	hgsc.bcm.edu	hg19	3	119306692	119306692	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADPRH	NM_001125	exon5	c.C1041A	p.L347L	TTCTCTCGGGTCA	.	62.0	32.0	53.0	0.0	.	33	.	.	Atlas-SNP
AADACL2	344752	hgsc.bcm.edu	hg19	3	151475327	151475327	+	Missense_Mutation	SNP	G	G	A	rs373909154		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	AADACL2	NM_207365	exon5	c.G1151A	p.R384H	ATTTACGTCTAGG	.	148.0	16.0	144.0	0.0	.	102	.	.	Atlas-SNP
GHSR	2693	hgsc.bcm.edu	hg19	3	172162985	172162985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GHSR	NM_198407	exon2	c.C1067A	p.S356Y	GCCCGAGAACTTT	.	193.0	31.0	93.0	0.0	.	104	.	.	Atlas-SNP
DNAJC19	131118	hgsc.bcm.edu	hg19	3	180706002	180706002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DNAJC19	NM_145261	exon2	c.G19T	p.A7S	CAACTGCTACCAC	.	217.0	24.0	250.0	0.0	.	4	.	.	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39439384	39439384	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	KLB	NM_175737	exon3	c.T1374C	p.T458T	TTATACTGCCTGG	.	123.0	11.0	155.0	0.0	.	95	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54256750	54256750	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FIP1L1	NM_030917	exon7	c.G460C	p.E154Q	CTCTTAGAGGTAG	.	61.0	11.0	57.0	0.0	.	60	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104065713	104065713	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CENPE	NM_001813	exon33	c.G4920A	p.Q1640Q	TTTCTCCTGAGTC	.	37.0	21.0	40.0	0.0	.	253	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115754838	115754838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	NDST4	NM_022569	exon12	c.G2320C	p.D774H	CTGGGTCAGATCT	.	104.0	9.0	192.0	0.0	.	193	.	.	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	hg19	4	145567924	145567924	+	Missense_Mutation	SNP	G	G	A	rs199961348		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	HHIP,caecum,carcinoma,0,1	HHIP	NM_022475	exon1	c.G97A	p.G33R	GGGAGCGGAGCAA	.	43.0	18.0	207.0	0.0	.	100	.	.	Atlas-SNP
FAM160A1	729830	hgsc.bcm.edu	hg19	4	152498952	152498952	+	Silent	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FAM160A1	NM_001109977	exon5	c.A456T	p.G152G	TTCAGGAACAACC	.	135.0	37.0	240.0	0.0	.	60	.	.	Atlas-SNP
RAPGEF2	9693	hgsc.bcm.edu	hg19	4	160262813	160262813	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAPGEF2	NM_014247	exon14	c.A2149T	p.S717C	CAGCTCAGCACTG	.	172.0	45.0	257.0	0.0	.	171	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183650121	183650121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001080477	exon13	c.G2372A	p.G791E	CAGATGGACTCAT	.	106.0	6.0	168.0	0.0	.	.	.	.	Atlas-SNP
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7867391	7867391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FASTKD3	NM_024091	exon2	c.A806T	p.K269I	TCCACTTTTTCAG	.	33.0	5.0	18.0	0.0	.	88	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13871081	13871081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DNAH5	NM_001369	exon24	c.C3629T	p.T1210I	GCCTTTGTCTCAG	.	235.0	100.0	325.0	0.0	.	868	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26902658	26902658	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CDH9	NM_016279	exon7	c.G1180T	p.E394X	CATCTTCATCTAC	.	83.0	45.0	73.0	0.0	.	305	.	.	Atlas-SNP
EMB	133418	hgsc.bcm.edu	hg19	5	49699137	49699137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EMB	NM_198449	exon6	c.A752T	p.E251V	ACAAGCTCAATGT	.	269.0	85.0	378.0	0.0	.	42	.	.	Atlas-SNP
ATG10	83734	hgsc.bcm.edu	hg19	5	81548458	81548458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ATG10	NM_001131028	exon7	c.G531T	p.K177N	ATTAAAGAATTCT	.	102.0	21.0	128.0	0.0	.	23	.	.	Atlas-SNP
PJA2	9867	hgsc.bcm.edu	hg19	5	108714875	108714875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PJA2	NM_014819	exon4	c.T313G	p.C105G	AACCACAAGTGGG	.	82.0	5.0	96.0	0.0	.	53	.	.	Atlas-SNP
SYCP2L	221711	hgsc.bcm.edu	hg19	6	10924837	10924837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SYCP2L	NM_001040274	exon15	c.C1181T	p.S394L	ACATATCACAAGT	.	103.0	33.0	69.0	0.0	.	101	.	.	Atlas-SNP
HIST1H2BD	3017	hgsc.bcm.edu	hg19	6	26158526	26158526	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HIST1H2BD	NM_021063	exon1	c.C129G	p.Y43X	TGTGTACAAGGTG	.	104.0	13.0	201.0	0.0	.	45	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33652419	33652419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ITPR3	NM_002224	exon38	c.C5091A	p.N1697K	CCAGAACCGGAAG	.	38.0	11.0	211.0	0.0	.	409	.	.	Atlas-SNP
BTBD9	114781	hgsc.bcm.edu	hg19	6	38565731	38565731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BTBD9	NM_052893	exon3	c.T140C	p.F47S	GCAGGAAAACGTT	.	198.0	25.0	221.0	0.0	.	85	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76024440	76024440	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FILIP1	NM_015687	exon5	c.G1108T	p.E370X	CACATTCTCCTTT	.	108.0	26.0	148.0	0.0	.	173	.	.	Atlas-SNP
IFNGR1	3459	hgsc.bcm.edu	hg19	6	137522034	137522034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IFNGR1	NM_000416	exon6	c.T845C	p.I282T	GGTAATATTATGC	.	152.0	9.0	117.0	0.0	.	46	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84727158	84727158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SEMA3D	NM_152754	exon2	c.T275C	p.L92P	CTGAGTAGAAAGA	.	159.0	16.0	178.0	0.0	.	177	.	.	Atlas-SNP
MUC12	10071	hgsc.bcm.edu	hg19	7	100646199	100646199	+	Missense_Mutation	SNP	T	T	C	rs4632981		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	MUC12,NS,carcinoma,0,1	MUC12	NM_001164462	exon2	c.T12355C	p.F4119L	ACACACTTTTCTG	.	4.0	4.0	0.0	0.0	.	140	.	C|1.000;|0.000	Atlas-SNP
LRRC4	64101	hgsc.bcm.edu	hg19	7	127670230	127670230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	LRRC4,colon,carcinoma,0,1	LRRC4	NM_022143	exon2	c.G464A	p.R155H	TTGTTGCGAAGCC	.	30.0	16.0	81.0	0.0	.	72	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140301984	140301984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	DENND2A	NM_015689	exon1	c.G214T	p.E72X	AATCCTCCTGTCC	.	94.0	37.0	179.0	0.0	.	132	.	.	Atlas-SNP
USP17L7	392197	hgsc.bcm.edu	hg19	8	11990062	11990062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	.	NM_001256869	exon1	c.T1457C	p.L486P	TTTAGCAGGGAGC	.	212.0	61.0	292.0	0.0	.	.	.	.	Atlas-SNP
LPL	4023	hgsc.bcm.edu	hg19	8	19809442	19809442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LPL	NM_000237	exon3	c.T412A	p.F138I	GCCCGGTTTATCA	.	73.0	7.0	192.0	0.0	.	78	.	.	Atlas-SNP
ADAMDEC1	27299	hgsc.bcm.edu	hg19	8	24256455	24256455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ADAMDEC1	NM_014479	exon9	c.A831G	p.I277M	TAAGATAAAGGTG	.	115.0	93.0	227.0	0.0	.	69	.	.	Atlas-SNP
RAB11FIP1	80223	hgsc.bcm.edu	hg19	8	37729417	37729417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RAB11FIP1	NM_001002814	exon4	c.A2903G	p.D968G	TCATCATCCGATG	.	106.0	6.0	292.0	0.0	.	105	.	.	Atlas-SNP
LRRC69	100130742	hgsc.bcm.edu	hg19	8	92201773	92201773	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRRC69	NM_001129890	exon6	c.A675G	p.E225E	GAGGGAATTCTAC	.	70.0	19.0	80.0	0.0	.	24	.	.	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	hg19	8	105509410	105509410	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LRP12	NM_013437	exon5	c.A1370C	p.H457P	TTACAATGGAAAT	.	96.0	13.0	155.0	0.0	.	124	.	.	Atlas-SNP
SLC30A8	169026	hgsc.bcm.edu	hg19	8	118175765	118175765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC30A8	NM_173851	exon6	c.G825A	p.M275I	ACTCATGGAAGGT	.	42.0	22.0	68.0	0.0	.	102	.	.	Atlas-SNP
SLC30A8	169026	hgsc.bcm.edu	hg19	8	118175766	118175766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC30A8	NM_173851	exon6	c.G826T	p.E276X	CTCATGGAAGGTA	.	42.0	22.0	67.0	0.0	.	102	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767486	105767486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYLC2	NM_001340	exon5	c.A573T	p.K191N	CAAAAAAGATAAA	.	166.0	44.0	130.0	0.0	.	109	.	.	Atlas-SNP
GARNL3	84253	hgsc.bcm.edu	hg19	9	130073954	130073954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	GARNL3	NM_032293	exon3	c.G259A	p.V87M	ACAGACGTGCACT	.	186.0	23.0	143.0	0.0	.	83	.	.	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	hg19	9	131764256	131764256	+	Splice_Site	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	NUP188,colon,carcinoma,0,1	NUP188	NM_015354	exon36	c.4137+1G>A	.	GCACAGGTGAGTG	.	49.0	7.0	134.0	0.0	.	140	.	.	Atlas-SNP
ATP5C1	509	hgsc.bcm.edu	hg19	10	7839122	7839122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ATP5C1	NM_001001973	exon3	c.A204G	p.I68M	TCGAATATATGGA	.	93.0	28.0	88.0	0.0	.	32	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	hg19	10	8006085	8006085	+	Silent	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	TAF3,NS,carcinoma,0,1	TAF3	NM_031923	exon3	c.G612T	p.T204T	GGACACGCTAGAT	.	144.0	51.0	270.0	2.0	.	93	.	.	Atlas-SNP
MSMB	4477	hgsc.bcm.edu	hg19	10	51562361	51562361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MSMB	NM_138634	exon3	c.C200T	p.T67I	GAAGGACCCAAAA	.	98.0	7.0	101.0	0.0	.	16	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55955547	55955547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	PCDH15	NM_001142763	exon12	c.C1216G	p.Q406E	AGCCTTGATAACT	.	89.0	45.0	139.0	0.0	.	1715	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106959827	106959827	+	Missense_Mutation	SNP	C	C	T	rs202188584	bycluster;alternate_allele	TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	SORCS3,colon,carcinoma,0,2	SORCS3	NM_014978	exon15	c.C2080T	p.R694W	TTCAGCCGGCATT	.	76.0	27.0	218.0	0.0	.	282	.	.	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	hg19	11	4944787	4944787	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	OR51G1,NS,carcinoma,0,1	OR51G1	NM_001005237	exon1	c.T783C	p.S261S	CACAAGAGACAAG	.	113.0	9.0	199.0	0.0	.	74	.	.	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	hg19	11	22380967	22380967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLC17A6	NM_020346	exon4	c.G467T	p.G156V	TTTTCGGAGCTGC	.	94.0	11.0	102.0	0.0	.	135	.	.	Atlas-SNP
CUL5	8065	hgsc.bcm.edu	hg19	11	107920728	107920728	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CUL5	NM_003478	exon4	c.A346T	p.I116F	CTAGAGATTACTT	.	124.0	11.0	113.0	0.0	.	71	.	.	Atlas-SNP
ZNF202	7753	hgsc.bcm.edu	hg19	11	123601551	123601551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZNF202	NM_003455	exon4	c.G46A	p.E16K	TTCCCTCTTCTTC	.	96.0	21.0	168.0	0.0	.	72	.	.	Atlas-SNP
TAS2R10	50839	hgsc.bcm.edu	hg19	12	10978718	10978718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TAS2R10	NM_023921	exon1	c.G151A	p.A51T	AAATAGCTAAGCC	.	91.0	35.0	98.0	0.0	.	44	.	.	Atlas-SNP
EPS8	2059	hgsc.bcm.edu	hg19	12	15813579	15813579	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EPS8	NM_004447	exon10	c.A906G	p.K302K	CTTGTTTTTCTTC	.	75.0	15.0	71.0	0.0	.	70	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72017915	72017915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ZFC3H1	NM_144982	exon23	c.G4475A	p.G1492E	CATCTTCCAGTAA	.	80.0	5.0	59.0	0.0	.	172	.	.	Atlas-SNP
TMTC2	160335	hgsc.bcm.edu	hg19	12	83290361	83290361	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TMTC2	NM_152588	exon3	c.G1419A	p.R473R	GATCAGGAATGGA	.	124.0	17.0	60.0	0.0	.	100	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109629713	109629713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ACACB	NM_001093	exon14	c.T2357A	p.M786K	ATGCGATGTTCAG	.	187.0	35.0	242.0	0.0	.	330	.	.	Atlas-SNP
OAS2	4939	hgsc.bcm.edu	hg19	12	113444385	113444385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OAS2	NM_002535	exon8	c.G1636T	p.V546L	CGCCTGGTGAAGC	.	118.0	43.0	132.0	0.0	.	86	.	.	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	hg19	12	115118767	115118767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TBX3	NM_005996	exon2	c.G574T	p.A192S	CAGTAGCGGGGCT	.	299.0	113.0	368.0	1.0	.	106	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120222843	120222843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CIT	NM_001206999	exon11	c.C1322A	p.P441H	TTGGCAGGGGAGT	.	107.0	5.0	149.0	0.0	.	535	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39266353	39266353	+	Silent	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FREM2	NM_207361	exon1	c.C4872A	p.T1624T	TGGCACCCATACA	.	111.0	22.0	204.0	0.0	.	385	.	.	Atlas-SNP
OXA1L	5018	hgsc.bcm.edu	hg19	14	23235798	23235798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OXA1L	NM_005015	exon1	c.C68T	p.P23L	TTTTACCGCCTGA	.	84.0	4.0	195.0	0.0	.	49	.	.	Atlas-SNP
SRSF5	6430	hgsc.bcm.edu	hg19	14	70237779	70237779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SRSF5	NM_001039465	exon7	c.A508T	p.N170Y	GAAATAAATGGGA	.	92.0	46.0	84.0	0.0	.	45	.	.	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	hg19	14	92436115	92436115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TRIP11	NM_004239	exon21	c.C5842G	p.L1948V	GTTTCAGAAGAAG	.	221.0	9.0	270.0	0.0	.	184	.	.	Atlas-SNP
EML1	2009	hgsc.bcm.edu	hg19	14	100361092	100361092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EML1	NM_001008707	exon7	c.G731T	p.W244L	TGGAATGGGTGTA	.	66.0	18.0	107.0	0.0	.	97	.	.	Atlas-SNP
EID1	23741	hgsc.bcm.edu	hg19	15	49170689	49170689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EID1	NM_014335	exon1	c.G316C	p.E106Q	GACTGGGAGGACG	.	50.0	4.0	124.0	0.0	.	16	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577142	7577142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	TP53_ENST00000455263,NS,carcinoma,+1,1	TP53	NM_000546	exon8	c.G796A	p.G266R	TCCGTCCCAGTAG	.	60.0	7.0	123.0	0.0	.	33396	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27421037	27421037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MYO18A	NM_078471	exon31	c.T4782A	p.D1594E	CTCCTCATCCCGA	.	63.0	29.0	108.0	0.0	.	217	.	.	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	hg19	17	33770885	33770885	+	Missense_Mutation	SNP	C	C	T	rs370603090		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	SLFN13	NM_144682	exon4	c.G1121A	p.S374N	GAAGGACTGTCAG	.	183.0	51.0	83.0	0.0	.	79	.	.	Atlas-SNP
TADA2A	6871	hgsc.bcm.edu	hg19	17	35836972	35836972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	TADA2A	NM_001488	exon16	c.A1217G	p.N406S	AATGTAACAAGCA	.	159.0	24.0	111.0	0.0	.	91	.	.	Atlas-SNP
LEPREL4	10609	hgsc.bcm.edu	hg19	17	39959557	39959557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	LEPREL4,NS,carcinoma,0,1	LEPREL4	NM_006455	exon7	c.G1273A	p.G425S	CGTCACCCTTGGC	.	11.0	6.0	217.0	1.0	.	20	.	.	Atlas-SNP
C18orf8	29919	hgsc.bcm.edu	hg19	18	21089229	21089229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C18orf8	NM_013326	exon5	c.A394G	p.I132V	CAAGGAATCGAAT	.	145.0	21.0	144.0	0.0	.	58	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6904085	6904085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	EMR1	NM_001256253	exon8	c.C841G	p.P281A	TGTGGTCCTAATT	.	108.0	12.0	101.0	0.0	.	153	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9018487	9018487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC16	NM_024690	exon24	c.C37687T	p.R12563C	CAGGGCGATGCAT	.	177.0	12.0	305.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9038131	9038131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MUC16	NM_024690	exon8	c.G36145T	p.V12049L	AAGTCACTGGAGC	.	114.0	8.0	103.0	0.0	.	4315	.	.	Atlas-SNP
ILF3	3609	hgsc.bcm.edu	hg19	19	10791742	10791742	+	Silent	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	ILF3	NM_017620	exon10	c.C1005T	p.G335G	CCTAGGCATGGAC	.	35.0	11.0	107.0	0.0	.	99	.	.	Atlas-SNP
OR7A10	390892	hgsc.bcm.edu	hg19	19	14952528	14952528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	OR7A10	NM_001005190	exon1	c.C162A	p.H54Q	GTGGAGGTGGGAG	.	112.0	8.0	126.0	0.0	.	33	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17068704	17068704	+	Silent	SNP	A	A	G	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CPAMD8	NM_015692	exon19	c.T2376C	p.T792T	GAAGAAAGTCCTT	.	102.0	26.0	92.0	0.0	.	192	.	.	Atlas-SNP
HAUS8	93323	hgsc.bcm.edu	hg19	19	17160925	17160925	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	HAUS8	NM_033417	exon11	c.C991G	p.Q331E	CTTCCTGGTTTGC	.	51.0	21.0	127.0	0.0	.	31	.	.	Atlas-SNP
BIRC8	112401	hgsc.bcm.edu	hg19	19	53793408	53793408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	BIRC8	NM_033341	exon1	c.G220A	p.G74R	CATGTCCCTTCTC	.	145.0	59.0	187.0	0.0	.	54	.	.	Atlas-SNP
RBL1	5933	hgsc.bcm.edu	hg19	20	35684006	35684006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RBL1	NM_183404	exon11	c.G1417A	p.E473K	CAGTCTCTAGTAT	.	99.0	12.0	59.0	0.0	.	114	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19207465	19207465	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CLTCL1	NM_001835	exon18	c.A2848T	p.R950X	CCTTTCTGCATAC	.	106.0	37.0	150.0	0.0	.	115	.	.	Atlas-SNP
C22orf29	79680	hgsc.bcm.edu	hg19	22	19839038	19839038	+	Silent	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	C22orf29	NM_024627	exon3	c.A747G	p.V249V	TCTAGATACAGAG	.	17.0	8.0	77.0	0.0	.	23	.	.	Atlas-SNP
FAM47B	170062	hgsc.bcm.edu	hg19	X	34961245	34961245	+	Silent	SNP	G	G	A	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	FAM47B	NM_152631	exon1	c.G297A	p.K99K	GCTCAAGAAAGCG	.	85.0	43.0	132.0	0.0	.	209	.	.	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83359655	83359655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	RPS6KA6	NM_014496	exon17	c.A1466G	p.D489G	CTACCATCATCAA	.	174.0	155.0	106.0	0.0	.	116	.	.	Atlas-SNP
MAGEA12	4111	hgsc.bcm.edu	hg19	X	151900290	151900290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MAGEA12	NM_005367	exon2	c.C511A	p.R171S	CGATGCGGACCAC	.	311.0	245.0	398.0	2.0	.	125	.	.	Atlas-SNP
IARS2	55699	hgsc.bcm.edu	hg19	1	220307815	220307816	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	IARS2	NM_018060	exon15	c.1908_1909del	p.636_637del	.	.	120.0	48.0	125.0	0.0	.	106	.	.	Atlas-Indel,Pindel
MTMR14	64419	hgsc.bcm.edu	hg19	3	9712791	9712791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	MTMR14	NM_001077525	exon6	c.613delT	p.Y205fs	.	.	145.0	66.0	148.0	0.0	.	43	.	.	Atlas-Indel,Pindel
CYB561D1	284613	hgsc.bcm.edu	hg19	1	110038869	110038871	+	In_Frame_Del	DEL	AAT	AAT	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	CYB561D1	NM_001134400	exon3	c.743_745del	p.248_249del	.	.	127.0	45.0	201.0	0.0	.	13	.	.	Atlas-Indel,Pindel
LBP	3929	hgsc.bcm.edu	hg19	20	36999383	36999383	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LBP	NM_004139	exon11	c.1150delG	p.A384fs	.	.	185.0	15.0	204.0	0.0	.	60	.	.	Atlas-INDEL
LDB3	11155	hgsc.bcm.edu	hg19	10	88478564	88478564	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BW-A5NO-01A-11D-A27I-10	TCGA-BW-A5NO-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	81a8b064-e735-455f-b2db-af7ae11daac4	3033ae06-ebb4-4dbb-9f60-b9b9d5c72805	.	LDB3	NM_001171610	exon12	c.1952delG	p.S651fs	.	.	60.0	24.0	148.0	0.0	.	164	.	.	Atlas-Indel,Pindel
