Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ANKRD34A	284615	hgsc.bcm.edu	hg19	1	145474788	145474788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD34A	NM_001039888	exon4	c.G1460T	p.S487I	TCCAGAGTCTAGG	.	125.0	28.0	35.0	0.0	.	52	.	.	Atlas-SNP
OR10R2	343406	hgsc.bcm.edu	hg19	1	158450031	158450031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	OR10R2	NM_001004472	exon1	c.T364C	p.F122L	CAAATGTTCTTCT	.	657.0	53.0	396.0	0.0	.	81	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160106761	160106761	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ATP1A2	NM_000702	exon20	c.A2780T	p.Q927L	TGGTGCAGTGGGC	.	286.0	52.0	116.0	0.0	.	167	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	GTCCGCGCGAAGT	.	172.0	8.0	76.0	0.0	.	343	.	.	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	hg19	2	128075798	128075798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	MAP3K2_ENST00000409947,NS,carcinoma,0,5	MAP3K2	NM_006609	exon12	c.G1141T	p.E381X	CCAATTCTCTTCC	.	114.0	13.0	118.0	0.0	.	78	.	.	Atlas-SNP
PIKFYVE	200576	hgsc.bcm.edu	hg19	2	209190043	209190043	+	Silent	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PIKFYVE	NM_015040	exon20	c.C2508T	p.G836G	CCTAGGCTGTACA	.	158.0	23.0	153.0	0.0	.	223	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38150949	38150949	+	Silent	SNP	T	T	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DLEC1	NM_007337	exon22	c.T3156A	p.P1052P	CCTCCCTTGTCAC	.	78.0	11.0	65.0	0.0	.	278	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77607249	77607249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ROBO2	NM_002942	exon9	c.T1386A	p.D462E	TAGAGATCCAAGA	.	165.0	65.0	114.0	0.0	.	527	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77607250	77607250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ROBO2	NM_002942	exon9	c.C1387T	p.P463S	AGAGATCCAAGAG	.	163.0	64.0	116.0	0.0	.	527	.	.	Atlas-SNP
GTPBP8	29083	hgsc.bcm.edu	hg19	3	112711969	112711969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GTPBP8	NM_014170	exon2	c.C433A	p.P145T	AAAAAACCAGTAT	.	284.0	17.0	360.0	0.0	.	22	.	.	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	hg19	4	8605903	8605903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPZ	NM_001014447	exon4	c.C697T	p.Q233X	CCCGGCCAGCACG	.	88.0	46.0	55.0	0.0	.	95	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127873149	127873149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	FBN2	NM_001999	exon1	c.G148T	p.A50S	CTGTAGCGGACCG	.	51.0	16.0	17.0	0.0	.	858	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148407322	148407322	+	Missense_Mutation	SNP	C	C	T	rs138040787	bycluster	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SH3TC2	NM_024577	exon11	c.G1973A	p.R658H	TGCAGGCGCTCGG	.	60.0	14.0	46.0	0.0	.	178	.	C|1.000;T|0.000	Atlas-SNP
PRSS16	10279	hgsc.bcm.edu	hg19	6	27218849	27218849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	PRSS16	NM_005865	exon6	c.C620T	p.A207V	CGGTCGCCTCCTC	.	115.0	26.0	69.0	0.0	.	66	.	.	Atlas-SNP
C6orf136	221545	hgsc.bcm.edu	hg19	6	30615170	30615170	+	Silent	SNP	C	C	T	rs372110822		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C6orf136	NM_001161376	exon1	c.C162T	p.S54S	GGGTTCCGCGCAG	.	16.0	5.0	1.0	0.0	.	31	.	.	Atlas-SNP
ALDH8A1	64577	hgsc.bcm.edu	hg19	6	135265052	135265052	+	Missense_Mutation	SNP	C	C	T	rs200812012		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ALDH8A1	NM_022568	exon2	c.G191A	p.R64H	GGGCTGCGGGATG	.	41.0	27.0	33.0	0.0	.	68	.	.	Atlas-SNP
NMBR	4829	hgsc.bcm.edu	hg19	6	142396836	142396836	+	Silent	SNP	G	G	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NMBR	NM_002511	exon3	c.C1122G	p.T374T	AGAATTGGTCACC	.	169.0	46.0	168.0	0.0	.	62	.	.	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	hg19	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	TGATGATCTAGGT	.	214.0	12.0	269.0	0.0	.	147	.	.	Atlas-SNP
GALNTL5	168391	hgsc.bcm.edu	hg19	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	CTGTCAGCTTGGT	.	203.0	12.0	264.0	0.0	.	87	.	.	Atlas-SNP
C8orf34	116328	hgsc.bcm.edu	hg19	8	69434170	69434170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	C8orf34	NM_052958	exon6	c.G902T	p.W301L	ACCAATGGGAAAG	.	95.0	7.0	128.0	0.0	.	170	.	.	Atlas-SNP
TRHR	7201	hgsc.bcm.edu	hg19	8	110131528	110131528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TRHR	NM_003301	exon2	c.C1041G	p.N347K	TGCTAACTACAGT	.	222.0	27.0	163.0	0.0	.	74	.	.	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	hg19	8	143994118	143994118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CYP11B2	NM_000498	exon8	c.C1226T	p.S409L	CCCAGCGAGTAGA	.	106.0	15.0	92.0	0.0	.	107	.	.	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	hg19	10	125639753	125639753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	CPXM2	NM_198148	exon2	c.G377T	p.R126L	GCCACACGGACAC	.	203.0	61.0	207.0	0.0	.	120	.	.	Atlas-SNP
BRSK2	9024	hgsc.bcm.edu	hg19	11	1472640	1472640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	BRSK2	NM_001256630	exon15	c.C1673T	p.S558L	CAGAGTCGTCCCC	.	50.0	20.0	43.0	0.0	.	97	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36046548	36046548	+	Missense_Mutation	SNP	C	C	T	rs371213802	alternate_allele	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	NBEA	NM_015678	exon41	c.C6460T	p.L2154F	GTGGTTCTCAGCA	.	32.0	12.0	22.0	0.0	.	340	.	.	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	hg19	13	42303780	42303780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	.	NM_015058	exon23	c.G2536C	p.V846L	CATCTACTACCAG	.	227.0	24.0	297.0	0.0	.	.	.	.	Atlas-SNP
VPS39	23339	hgsc.bcm.edu	hg19	15	42492106	42492106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	VPS39	NM_015289	exon2	c.C127T	p.R43W	CCTTCCGAATCCT	.	162.0	29.0	180.0	0.0	.	53	.	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	hg19	15	79069906	79069906	+	Silent	SNP	G	G	A	rs377763034	bycluster	TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ADAMTS7	NM_014272	exon9	c.C1347T	p.D449D	AGGGTCGTCCAGG	.	61.0	17.0	55.0	0.0	.	142	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89350737	89350737	+	Missense_Mutation	SNP	C	C	T	rs370690185		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ANKRD11	NM_001256183	exon9	c.G2213A	p.R738H	TTCGAACGGTCTT	.	426.0	206.0	578.0	0.0	.	195	.	.	Atlas-SNP
ABR	29	hgsc.bcm.edu	hg19	17	973210	973210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.G1015C	p.G339R	CTCACCCTGCAGA	.	94.0	35.0	69.0	0.0	.	119	.	.	Atlas-SNP
ABR	29	hgsc.bcm.edu	hg19	17	973214	973214	+	Silent	SNP	A	A	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	ABR	NM_021962	exon9	c.T1011A	p.S337S	CCCTGCAGAGGTC	.	101.0	41.0	70.0	0.0	.	119	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23807168	23807168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	TAF4B	NM_005640	exon1	c.C271T	p.P91S	CCTGCTCCTCAGA	.	200.0	33.0	155.0	0.0	.	71	.	.	Atlas-SNP
LBP	3929	hgsc.bcm.edu	hg19	20	36999419	36999419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	LBP	NM_004139	exon11	c.G1187A	p.S396N	ATACCAGCAAGAT	.	233.0	22.0	135.0	0.0	.	60	.	.	Atlas-SNP
DGCR6L	85359	hgsc.bcm.edu	hg19	22	20302911	20302911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	DGCR6L	NM_033257	exon4	c.G461A	p.S154N	AGTGTGCTCTGCT	.	134.0	10.0	91.0	0.0	.	9	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	hg19	X	24741360	24741360	+	Silent	SNP	G	G	A	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	POLA1	NM_016937	exon11	c.G1158A	p.T386T	GCGAACGCTTTAC	.	194.0	131.0	175.0	1.0	.	117	.	.	Atlas-SNP
HTATSF1	27336	hgsc.bcm.edu	hg19	X	135593320	135593320	+	Silent	SNP	C	C	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	HTATSF1	NM_001163280	exon10	c.C1416G	p.P472P	CTGCCCCAAAAGA	.	72.0	14.0	66.0	0.0	.	66	.	.	Atlas-SNP
KCNQ4	9132	hgsc.bcm.edu	hg19	1	41285601	41285602	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	KCNQ4	NM_004700	exon6	c.889_890insG	p.R297fs	.	.	155.0	10.0	163.0	0.0	.	58	.	.	Atlas-INDEL
SBNO2	22904	hgsc.bcm.edu	hg19	19	1113608	1113609	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SBNO2	NM_014963	exon19	c.2173_2174insG	p.L725fs	.	.	148.0	10.0	69.0	0.0	.	112	.	.	Atlas-INDEL
XRCC5	7520	hgsc.bcm.edu	hg19	2	217012804	217012813	+	Splice_Site	DEL	TTTCCAACAG	TTTCCAACAG	-	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	TTTCCAACAG	TTTCCAACAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	XRCC5	.	.	.	.	.	.	289.0	22.0	305.0	0.0	.	64	.	.	Atlas-Indel,Pindel
SP6	80320	hgsc.bcm.edu	hg19	17	45924716	45924716	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-5261-01A-01D-A12Z-10	TCGA-CC-5261-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a2f143d6-ba07-4ff0-960d-b29c3c716665	5ad24cf2-db35-428a-a10f-50b2decbe482	.	SP6	NM_199262	exon2	c.1081delG	p.G361fs	.	.	105.0	22.0	36.0	0.0	.	26	.	.	Pindel
