Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRDM16	63976	hgsc.bcm.edu	hg19	1	3342300	3342300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PRDM16	NM_022114	exon13	c.A3095T	p.H1032L	ACGAGCACGAGAA	.	114.0	38.0	44.0	0.0	.	147	.	.	Atlas-SNP
MASP2	10747	hgsc.bcm.edu	hg19	1	11107262	11107262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MASP2	NM_139208	exon1	c.G3A	p.M1I	CTACCTCATGGTG	.	112.0	36.0	47.0	0.0	.	71	.	.	Atlas-SNP
SRM	6723	hgsc.bcm.edu	hg19	1	11119332	11119332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SRM	NM_003132	exon2	c.C238T	p.Q80X	TCTCCTGGTAGGA	.	337.0	95.0	98.0	0.0	.	18	.	.	Atlas-SNP
TMEM82	388595	hgsc.bcm.edu	hg19	1	16073479	16073479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM82	NM_001013641	exon5	c.T875A	p.L292H	GCATCCTTGTCTC	.	400.0	114.0	159.0	0.0	.	30	.	.	Atlas-SNP
FBXO42	54455	hgsc.bcm.edu	hg19	1	16577289	16577289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FBXO42	NM_018994	exon10	c.G2030T	p.S677I	TGCAGGCTGGTTT	.	393.0	133.0	236.0	0.0	.	53	.	.	Atlas-SNP
RCC1	1104	hgsc.bcm.edu	hg19	1	28863318	28863318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RCC1	NM_001048194	exon10	c.G1090A	p.E364K	GGTGCTGAGGAGA	.	264.0	149.0	97.0	0.0	.	61	.	.	Atlas-SNP
RBM8A	9939	hgsc.bcm.edu	hg19	1	145508934	145508934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RBM8A	NM_005105	exon5	c.T361C	p.Y121H	GTTGAATATGAAA	.	483.0	184.0	215.0	0.0	.	18	.	.	Atlas-SNP
IFI16	3428	hgsc.bcm.edu	hg19	1	159015214	159015214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	IFI16	NM_001206567	exon7	c.A1289T	p.Q430L	CTCCTCAGATGCC	.	1731.0	213.0	1314.0	0.0	.	111	.	.	Atlas-SNP
KISS1	3814	hgsc.bcm.edu	hg19	1	204159887	204159887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KISS1	NM_002256	exon3	c.G142T	p.E48X	TCTGCTCCCCGGG	.	101.0	50.0	26.0	0.0	.	6	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209789918	209789918	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMB3	NM_000228	exon22	c.C3280T	p.Q1094X	AACTCTGACCCAA	.	631.0	221.0	166.0	0.0	.	136	.	.	Atlas-SNP
GUK1	2987	hgsc.bcm.edu	hg19	1	228336430	228336430	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GUK1	NM_001242840	exon7	c.C603T	p.P201P	CGGGCCCATACAG	.	101.0	50.0	20.0	0.0	.	34	.	.	Atlas-SNP
EXO1	9156	hgsc.bcm.edu	hg19	1	242045224	242045224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	EXO1	NM_006027	exon12	c.G2116A	p.D706N	GAATCTGATTGCA	.	210.0	77.0	467.0	1.0	.	103	.	.	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9667941	9667941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAM17	NM_003183	exon5	c.G593A	p.G198E	ACTAACCCTTTTG	.	92.0	28.0	155.0	0.0	.	61	.	.	Atlas-SNP
TRMT61B	55006	hgsc.bcm.edu	hg19	2	29092901	29092901	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TRMT61B	NM_017910	exon1	c.T243C	p.C81C	CGAAAGACATCCA	.	311.0	152.0	86.0	0.0	.	28	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141250227	141250227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRP1B	NM_018557	exon57	c.G9070A	p.E3024K	TTATCTCATGATG	.	59.0	15.0	113.0	0.0	.	1315	.	.	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	hg19	2	225266346	225266346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	FAM124B_ENST00000409685,NS,carcinoma,0,2	FAM124B	NM_024785	exon1	c.G140C	p.R47P	CTGGCCCGTTCAG	.	65.0	53.0	59.0	0.0	.	71	.	.	Atlas-SNP
GLB1	2720	hgsc.bcm.edu	hg19	3	33106973	33106973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GLB1	NM_001135602	exon3	c.G322A	p.A108T	AACTGGCCCTCCA	.	428.0	230.0	314.0	0.0	.	51	.	.	Atlas-SNP
SLC22A14	9389	hgsc.bcm.edu	hg19	3	38347844	38347844	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SLC22A14	NM_004803	exon1	c.C327T	p.H109H	CCCCCACCTGTCC	.	273.0	20.0	115.0	0.0	.	64	.	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	hg19	3	57678508	57678508	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_152678	exon2	c.237+1G>T	.	GCCTCACCTCCAC	.	48.0	29.0	16.0	0.0	.	.	.	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	hg19	3	57678509	57678509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_152678	exon1	c.G237T	p.E79D	CCTCACCTCCACG	.	52.0	31.0	17.0	0.0	.	.	.	.	Atlas-SNP
KY	339855	hgsc.bcm.edu	hg19	3	134369796	134369796	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KY	NM_178554	exon1	c.C7T	p.L3L	TCTTCAGCTCCAT	.	325.0	85.0	138.0	0.0	.	92	.	.	Atlas-SNP
PLS1	5357	hgsc.bcm.edu	hg19	3	142405170	142405170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLS1	NM_001172312	exon9	c.A933T	p.K311N	CCCTAAAGGTGGG	.	116.0	32.0	87.0	0.0	.	71	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	156009791	156009791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KCNAB1	NM_172159	exon1	c.T95A	p.V32E	CCAATGTGGTGAA	.	313.0	27.0	141.0	0.0	.	176	.	.	Atlas-SNP
TLR1	7096	hgsc.bcm.edu	hg19	4	38799406	38799406	+	Silent	SNP	C	C	A	rs375416156	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	TLR1,right_upper_lobe,carcinoma,0,1	TLR1	NM_003263	exon4	c.G1047T	p.P349P	CAGGAACGGGCTA	.	79.0	16.0	84.0	0.0	.	70	.	.	Atlas-SNP
YIPF7	285525	hgsc.bcm.edu	hg19	4	44631480	44631480	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	YIPF7	NM_182592	exon4	c.T438C	p.N146N	CGTTTCATTCATA	.	104.0	58.0	158.0	0.0	.	33	.	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	hg19	4	46930408	46930408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GABRA4	NM_000809	exon9	c.C1499A	p.S500X	GTAGCTGACAACT	.	99.0	63.0	196.0	1.0	.	129	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55599301	55599301	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIT	NM_000222	exon17	c.T2427A	p.C809X	GATTTGTGATTTT	.	82.0	17.0	174.0	0.0	.	7396	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123268886	123268886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1109	NM_015312	exon74	c.G13081C	p.A4361P	TCCCCAGCTTCCA	.	60.0	17.0	138.0	0.0	.	424	.	.	Atlas-SNP
FAM198B	51313	hgsc.bcm.edu	hg19	4	159048703	159048703	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	FAM198B	NM_001031700	exon6	c.T1440A	p.S480S	AAACAGAGACTGA	.	76.0	64.0	134.0	0.0	.	134	.	.	Atlas-SNP
HAND2	9464	hgsc.bcm.edu	hg19	4	174450187	174450187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HAND2	NM_021973	exon1	c.C254A	p.P85Q	GCGCCCGGCGGCA	.	22.0	22.0	7.0	0.0	.	25	.	.	Atlas-SNP
ZDHHC11	79844	hgsc.bcm.edu	hg19	5	837587	837587	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZDHHC11	NM_024786	exon6	c.A793T	p.K265X	TCATCTTCTTGGC	.	1986.0	262.0	491.0	0.0	.	97	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37186475	37186475	+	Missense_Mutation	SNP	C	C	A	rs373443151	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	C5orf42	NM_023073	exon24	c.G4102T	p.A1368S	GAAATGCTTTCAC	.	567.0	136.0	217.0	0.0	.	422	.	.	Atlas-SNP
ERAP2	64167	hgsc.bcm.edu	hg19	5	96219543	96219543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ERAP2	NM_001130140	exon3	c.T623C	p.F208S	TGGCTTTCCCTTG	.	175.0	149.0	250.0	0.0	.	77	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148411195	148411195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SH3TC2	NM_024577	exon9	c.G1057T	p.G353X	CACTTCCCAGGGC	.	153.0	131.0	103.0	0.0	.	178	.	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	hg19	5	170610173	170610173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	RANBP17	NM_022897	exon17	c.A1868G	p.Y623C	TTACTTATATCCT	.	56.0	44.0	288.0	0.0	.	108	.	.	Atlas-SNP
OR2W1	26692	hgsc.bcm.edu	hg19	6	29012335	29012335	+	Silent	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR2W1	NM_030903	exon1	c.T618A	p.I206I	GAGGACAATTATA	.	257.0	77.0	226.0	0.0	.	36	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138550956	138550956	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KIAA1244	NM_020340	exon5	c.T387C	p.D129D	ATTTGATCTGAAT	.	406.0	181.0	302.0	0.0	.	236	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157502282	157502282	+	Silent	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARID1B	NM_020732	exon12	c.C3315G	p.V1105V	CTACGTCTGCGTC	.	111.0	40.0	40.0	0.0	.	320	.	.	Atlas-SNP
SHFM1	7979	hgsc.bcm.edu	hg19	7	96324155	96324155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	SHFM1,NS,carcinoma,0,1	SHFM1	NM_006304	exon2	c.A125C	p.N42T	TCCCAATTATCCT	.	147.0	17.0	143.0	0.0	.	12	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107836240	107836240	+	Silent	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NRCAM	NM_001037132	exon12	c.T1428C	p.C476C	GAAGGCACAGTCT	.	359.0	177.0	223.0	0.0	.	267	.	.	Atlas-SNP
PNPLA8	50640	hgsc.bcm.edu	hg19	7	108155899	108155899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PNPLA8	NM_001256008	exon2	c.C37T	p.L13F	TAAGGAGGTAAAT	.	82.0	43.0	87.0	0.0	.	82	.	.	Atlas-SNP
AASS	10157	hgsc.bcm.edu	hg19	7	121756964	121756964	+	Silent	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	AASS	NM_005763	exon7	c.C735G	p.P245P	TTCATGGGGCTCC	.	118.0	19.0	94.0	0.0	.	123	.	.	Atlas-SNP
TACC1	6867	hgsc.bcm.edu	hg19	8	38678084	38678084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TACC1	NM_006283	exon3	c.G1322C	p.C441S	ACTTTTGTTCTCC	.	60.0	10.0	16.0	0.0	.	98	.	.	Atlas-SNP
ZMAT4	79698	hgsc.bcm.edu	hg19	8	40683185	40683185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZMAT4	NM_024645	exon2	c.C11T	p.S4F	ATATCGGAGGACT	.	87.0	37.0	35.0	0.0	.	47	.	.	Atlas-SNP
OPRK1	4986	hgsc.bcm.edu	hg19	8	54147486	54147486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OPRK1	NM_000912	exon3	c.C443G	p.T148S	GTCAAGGTGAAGA	.	225.0	64.0	99.0	0.0	.	90	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68934295	68934295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PREX2	NM_025170	exon4	c.G361C	p.E121Q	TATGATGAATATT	.	43.0	16.0	75.0	0.0	.	614	.	.	Atlas-SNP
DCAF4L2	138009	hgsc.bcm.edu	hg19	8	88886016	88886016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DCAF4L2	NM_152418	exon1	c.C184T	p.H62Y	AGCTATGAATCTG	.	544.0	271.0	199.0	0.0	.	187	.	.	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	hg19	9	107457698	107457698	+	Silent	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR13D1	NM_001004484	exon1	c.T996A	p.A332A	AGAGGCTGTAAAG	.	131.0	36.0	122.0	0.0	.	42	.	.	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	hg19	9	109687219	109687219	+	Silent	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF462	NM_021224	exon3	c.T1026G	p.S342S	CATGTCTTACCCT	.	197.0	35.0	54.0	0.0	.	322	.	.	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131476850	131476850	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PKN3	NM_013355	exon12	c.G1491A	p.L497L	TTTCCTGCCCAAG	.	275.0	111.0	89.0	0.0	.	62	.	.	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	hg19	9	133948175	133948175	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LAMC3	NM_006059	exon19	c.T3370A	p.S1124T	CTGGAGTCCTCGG	.	283.0	127.0	94.0	0.0	.	167	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13239672	13239672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MCM10	NM_182751	exon15	c.C2027T	p.T676I	CAAAAACAAACCC	.	287.0	118.0	148.0	0.0	.	76	.	.	Atlas-SNP
CCDC6	8030	hgsc.bcm.edu	hg19	10	61572436	61572436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	CCDC6	NM_005436	exon5	c.A804C	p.E268D	TTCCACTTCATTC	.	96.0	82.0	153.0	0.0	.	44	.	.	Atlas-SNP
OR10A2	341276	hgsc.bcm.edu	hg19	11	6891293	6891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	OR10A2	NM_001004460	exon1	c.C308T	p.A103V	TCCTGGCTACCAT	.	265.0	114.0	134.0	0.0	.	55	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43833853	43833853	+	Silent	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADAMTS20	NM_025003	exon17	c.G2310T	p.G770G	AAAATTCCCTTCA	.	38.0	16.0	45.0	0.0	.	635	.	.	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	hg19	12	52056826	52056826	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	SCN8A	NM_014191	exon2	c.C225T	p.G75G	CCAAGGCCTGGTT	.	254.0	123.0	151.0	0.0	.	331	.	.	Atlas-SNP
KRT6C	286887	hgsc.bcm.edu	hg19	12	52863028	52863028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KRT6C	NM_173086	exon9	c.A1513T	p.S505C	AGCCACTGCCGAC	.	135.0	29.0	72.0	0.0	.	55	.	.	Atlas-SNP
HOXC8	3224	hgsc.bcm.edu	hg19	12	54405067	54405067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HOXC8	NM_022658	exon2	c.G631T	p.D211Y	AACAAGGATAAAC	.	146.0	33.0	43.0	0.0	.	15	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124829344	124829344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	NCOR2_ENST00000405201,NS,carcinoma,0,2	NCOR2	NM_006312	exon34	c.G4513A	p.E1505K	TCTCCTCGTAGCA	.	72.0	18.0	17.0	0.0	.	475	.	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	128899692	128899692	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TMEM132C	NM_001136103	exon2	c.G501A	p.L167L	GAAGCTGCCATGC	.	156.0	26.0	60.0	0.0	.	142	.	.	Atlas-SNP
MAP4K5	11183	hgsc.bcm.edu	hg19	14	50915494	50915494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MAP4K5	NM_006575	exon15	c.A1072G	p.M358V	TTACCATTTCATC	.	39.0	29.0	200.0	0.0	.	48	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68238928	68238928	+	Splice_Site	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFYVE26	NM_015346	exon29	c.5321-1G>A	.	AGATACCTGGGAG	.	90.0	71.0	148.0	0.0	.	223	.	.	Atlas-SNP
VWA3A	146177	hgsc.bcm.edu	hg19	16	22126725	22126725	+	Silent	SNP	G	G	A	rs368919567		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	VWA3A	NM_173615	exon9	c.G747A	p.L249L	CAACCTGCTACAA	.	173.0	79.0	98.0	0.0	.	115	.	.	Atlas-SNP
ZNF668	79759	hgsc.bcm.edu	hg19	16	31072640	31072640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF668	NM_001172669	exon4	c.T1678A	p.S560T	GGTGTGAGCGCTC	.	147.0	28.0	51.0	0.0	.	121	.	.	Atlas-SNP
TSNAXIP1	55815	hgsc.bcm.edu	hg19	16	67859123	67859123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TSNAXIP1	NM_018430	exon7	c.C600A	p.D200E	CGCAGACCTGAAT	.	165.0	69.0	68.0	0.0	.	66	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72831362	72831362	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFHX3	NM_006885	exon9	c.A5219C	p.Q1740P	GCTTGTTGTTGTT	.	407.0	19.0	106.0	0.0	.	404	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72831363	72831363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFHX3	NM_006885	exon9	c.C5218G	p.Q1740E	CTTGTTGTTGTTG	.	404.0	21.0	105.0	0.0	.	404	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319829	21319829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_001194958	exon3	c.C1175A	p.A392E	ATGAGGCGGACGG	.	100.0	21.0	25.0	0.0	.	.	.	.	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	hg19	17	36622999	36622999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ARHGAP23	NM_001199417	exon7	c.A1075T	p.T359S	CGGGCCACCCGTT	.	108.0	44.0	39.0	0.0	.	48	.	.	Atlas-SNP
GJC1	10052	hgsc.bcm.edu	hg19	17	42883077	42883077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	GJC1	NM_005497	exon3	c.G109C	p.A37P	CTACAGCTGTAAG	.	230.0	96.0	139.0	0.0	.	45	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76421607	76421607	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	DNAH17	NM_173628	exon80	c.T12961A	p.W4321R	CCAGCCACACGGT	.	100.0	12.0	31.0	0.0	.	347	.	.	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77075702	77075702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ENGASE	NM_001042573	exon4	c.A548G	p.H183R	ACAGGCATGGGGT	.	197.0	82.0	65.0	0.0	.	55	.	.	Atlas-SNP
LRRC45	201255	hgsc.bcm.edu	hg19	17	79982609	79982609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LRRC45	NM_144999	exon3	c.A323G	p.K108R	TGGGAAAACTCCT	.	108.0	46.0	51.0	0.0	.	22	.	.	Atlas-SNP
MBD3	53615	hgsc.bcm.edu	hg19	19	1578491	1578491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MBD3	NM_003926	exon6	c.G724T	p.A242S	TCAGCGCCTCCTC	.	98.0	20.0	39.0	0.0	.	22	.	.	Atlas-SNP
LONP1	9361	hgsc.bcm.edu	hg19	19	5699211	5699211	+	Silent	SNP	G	G	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	LONP1	NM_004793	exon10	c.C1512T	p.S504S	GGCAATGAACTCC	.	43.0	27.0	22.0	0.0	.	66	.	.	Atlas-SNP
ZNF565	147929	hgsc.bcm.edu	hg19	19	36673862	36673862	+	Nonsense_Mutation	SNP	C	C	A	rs373289614	bycluster;alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF565	NM_001042474	exon5	c.G1006T	p.E336X	TACACTCGTAGGG	.	163.0	49.0	94.0	0.0	.	46	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38378936	38378936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	WDR87	NM_031951	exon6	c.A5258T	p.E1753V	GCCTCCTCTTCCT	.	359.0	121.0	329.0	0.0	.	191	.	.	Atlas-SNP
ZFP36	7538	hgsc.bcm.edu	hg19	19	39898413	39898413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP36	NM_003407	exon2	c.G73T	p.V25L	GTGCCCGTGCCAT	.	72.0	18.0	24.0	0.0	.	19	.	.	Atlas-SNP
B9D2	80776	hgsc.bcm.edu	hg19	19	41860879	41860879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	B9D2	NM_030578	exon4	c.G254T	p.S85I	CCAAAGCTGTCCT	.	72.0	43.0	32.0	0.0	.	9	.	.	Atlas-SNP
KDELR1	10945	hgsc.bcm.edu	hg19	19	48886580	48886580	+	Silent	SNP	T	T	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	KDELR1	NM_006801	exon5	c.A609G	p.L203L	CCCCTTTAGGACT	.	107.0	56.0	49.0	0.0	.	26	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55493601	55493601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NLRP2	NM_017852	exon6	c.A535T	p.S179C	GGAGATAGCAAAG	.	239.0	124.0	104.0	0.0	.	161	.	.	Atlas-SNP
ZIK1	284307	hgsc.bcm.edu	hg19	19	58101688	58101688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZIK1	NM_001010879	exon4	c.G509T	p.W170L	GCAAATGGGAGGT	.	147.0	49.0	83.0	0.0	.	94	.	.	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	hg19	20	4202228	4202228	+	Missense_Mutation	SNP	G	G	T	rs371559421	alternate_allele	TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADRA1D	NM_000678	exon2	c.C1661A	p.A554D	CAGGTGGCGCCCT	.	236.0	102.0	62.0	0.0	.	36	.	.	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	hg19	20	4202229	4202229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ADRA1D	NM_000678	exon2	c.G1660A	p.A554T	AGGTGGCGCCCTC	.	236.0	102.0	60.0	0.0	.	36	.	.	Atlas-SNP
BMP7	655	hgsc.bcm.edu	hg19	20	55840845	55840845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	BMP7	NM_001719	exon1	c.A334T	p.S112C	GGGTACTGAAGAC	.	177.0	79.0	61.0	0.0	.	60	.	.	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	hg19	X	12904609	12904609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	TLR7	NM_016562	exon3	c.A982G	p.K328E	TTGGCCAAAGAAA	.	95.0	82.0	86.0	0.0	.	125	.	.	Atlas-SNP
MORF4L2	9643	hgsc.bcm.edu	hg19	X	102931737	102931737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	MORF4L2	NM_001142422	exon5	c.G219T	p.R73S	GGTCTTCCTCACG	.	219.0	206.0	82.0	0.0	.	35	.	.	Atlas-SNP
ZFP92	139735	hgsc.bcm.edu	hg19	X	152685756	152685756	+	Silent	SNP	C	C	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZFP92	NM_001136273	exon3	c.C231T	p.I77I	AGACATCCCCAGA	.	307.0	291.0	65.0	0.0	.	26	.	.	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34826481	34826482	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	RAI14,NS,carcinoma,0,1	RAI14	NM_001145525	exon18	c.2705_2706insC	p.N902fs	.	.	298.0	19.0	86.0	0.0	.	100	.	.	Atlas-INDEL
ZNF395	55893	hgsc.bcm.edu	hg19	8	28210928	28210928	+	Splice_Site	DEL	G	G	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	ZNF395	NM_018660	exon6	c.584-2C>-	.	.	.	164.0	80.0	55.0	0.0	.	54	.	.	Atlas-Indel,Pindel
PLCG1	5335	hgsc.bcm.edu	hg19	20	39792450	39792451	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PLCG1	NM_182811	exon10	c.987_988insT	p.Y329fs	.	.	353.0	140.0	112.0	0.0	.	111	.	.	Atlas-Indel,Pindel
NFYA	4800	hgsc.bcm.edu	hg19	6	41065105	41065106	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	NFYA	NM_002505	exon10	c.1000_1001insA	p.Q334fs	.	.	264.0	16.0	144.0	0.0	.	33	.	.	Atlas-INDEL
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6360967	6360970	+	Frame_Shift_Del	DEL	AGGC	AGGC	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	AGGC	AGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	PITPNM3	NM_031220	exon19	c.2564_2567del	p.855_856del	.	.	54.0	41.0	52.0	0.0	.	91	.	.	Atlas-Indel,Pindel
QSOX2	169714	hgsc.bcm.edu	hg19	9	139108510	139108511	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	QSOX2	NM_181701	exon9	c.1145_1146insG	p.A382fs	.	.	119.0	13.0	33.0	0.0	.	63	.	.	Atlas-INDEL
GSE1	23199	hgsc.bcm.edu	hg19	16	85687939	85687940	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	.	NM_014615	exon4	c.481_482del	p.161_161del	.	.	147.0	121.0	93.0	0.0	.	.	.	.	Atlas-Indel,Pindel
HEATR2	54919	hgsc.bcm.edu	hg19	7	769380	769381	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	HEATR2	NM_017802	exon2	c.676_677insC	p.A226fs	.	.	226.0	15.0	56.0	0.0	.	62	.	.	Atlas-INDEL
UBXN7	26043	hgsc.bcm.edu	hg19	3	196134222	196134222	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-5264-01A-01D-A12Z-10	TCGA-CC-5264-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7ebf24cf-16a5-4dd3-b594-062b8d626dc3	b864a5b7-de17-4b12-b93e-4246ea56a3d6	.	UBXN7	NM_015562	exon2	c.117delC	p.N39fs	.	.	278.0	93.0	196.0	0.0	.	43	.	.	Atlas-Indel,Pindel
