Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLEKHG5	57449	hgsc.bcm.edu	hg19	1	6530878	6530878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PLEKHG5	NM_001265592	exon15	c.C1696T	p.R566W	TGAGCCGCTGGTG	.	75.0	47.0	52.0	0.0	.	66	.	.	Atlas-SNP
ST6GALNAC5	81849	hgsc.bcm.edu	hg19	1	77333366	77333366	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ST6GALNAC5	NM_030965	exon1	c.G6A	p.K2K	AATGAAGACCCTG	.	118.0	52.0	115.0	0.0	.	59	.	.	Atlas-SNP
RUSC1-AS1	284618	hgsc.bcm.edu	hg19	1	155290718	155290718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	NM_001039517	exon2	c.G562T	p.G188W	GTGCCCCGCCGGG	.	41.0	13.0	18.0	0.0	.	.	.	.	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9676045	9676045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ADAM17	NM_003183	exon4	c.C368A	p.P123H	GAGTCAGGCTCAC	.	108.0	8.0	122.0	0.0	.	61	.	.	Atlas-SNP
MYCN	4613	hgsc.bcm.edu	hg19	2	16082220	16082220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYCN	NM_005378	exon2	c.A34G	p.M12V	CCGGGCATGATCT	.	268.0	120.0	162.0	0.0	.	63	.	.	Atlas-SNP
TRABD2A	129293	hgsc.bcm.edu	hg19	2	85066338	85066338	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	C2orf89_ENST00000335459,extremity,malignant_melanoma,0,1	.	NM_001080824	exon3	c.A779C	p.Y260S	CGCTTCCCTATTC	.	193.0	23.0	130.0	0.0	.	.	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179472788	179472788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TTN	NM_001267550	exon276	c.C52726T	p.P17576S	CTCTTGGGATAGG	.	172.0	78.0	120.0	0.0	.	18412	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	hg19	3	9776191	9776191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BRPF1	NM_001003694	exon2	c.G367A	p.E123K	GAGGATGAGGAAG	.	116.0	72.0	88.0	0.0	.	104	.	.	Atlas-SNP
PRRT3	285368	hgsc.bcm.edu	hg19	3	9988526	9988526	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PRRT3	NM_207351	exon4	c.G2331T	p.S777S	ACCCAACGACGCA	.	12.0	11.0	2.0	0.0	.	35	.	.	Atlas-SNP
ZCWPW2	152098	hgsc.bcm.edu	hg19	3	28566047	28566047	+	Silent	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZCWPW2	NM_001040432	exon9	c.A939T	p.A313A	TCCTGCAGGCAGT	.	326.0	79.0	323.0	0.0	.	49	.	.	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37366808	37366808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GOLGA4	NM_001172713	exon15	c.A3497G	p.N1166S	ACTTGAATAAGTC	.	225.0	123.0	207.0	0.0	.	173	.	.	Atlas-SNP
GMPS	8833	hgsc.bcm.edu	hg19	3	155643090	155643090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GMPS	NM_003875	exon12	c.A1495T	p.M499L	AAGCTGATGCAAA	.	1011.0	681.0	643.0	1.0	.	70	.	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180381668	180381668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC39	NM_181426	exon2	c.T197G	p.L66R	ATTGAGAGCTCTT	.	168.0	13.0	137.0	0.0	.	242	.	.	Atlas-SNP
KIAA1239	57495	hgsc.bcm.edu	hg19	4	37447823	37447823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	KIAA1239	NM_001144990	exon7	c.A4213C	p.I1405L	CTGCTGATTACAC	.	48.0	21.0	48.0	0.0	.	79	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86637134	86637134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RASA1	NM_002890	exon6	c.A1045T	p.K349X	GAAGGAAAAATGT	.	145.0	49.0	167.0	0.0	.	213	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141036086	141036086	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARAP3	NM_022481	exon27	c.G3774T	p.L1258L	CTTGAGCAGCAGC	.	92.0	35.0	86.0	0.0	.	139	.	.	Atlas-SNP
B3GAT2	135152	hgsc.bcm.edu	hg19	6	71603895	71603895	+	Silent	SNP	G	G	A	rs371527631	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	B3GAT2	NM_080742	exon2	c.C672T	p.N224N	TTTGCCGTTTTCC	.	67.0	18.0	61.0	0.0	.	33	.	.	Atlas-SNP
HDAC2	3066	hgsc.bcm.edu	hg19	6	114264582	114264582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HDAC2	NM_001527	exon12	c.T1311A	p.D437E	CTTATGATCAGCC	.	194.0	71.0	198.0	0.0	.	102	.	.	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	hg19	7	43484350	43484350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	HECW1	NM_015052	exon11	c.T1579A	p.S527T	CGGGCCTCGGTGA	.	73.0	20.0	58.0	0.0	.	540	.	.	Atlas-SNP
MYO1G	64005	hgsc.bcm.edu	hg19	7	45005391	45005391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MYO1G	NM_033054	exon17	c.G2226A	p.W742X	CCGGAACCAGCGC	.	23.0	14.0	16.0	0.0	.	86	.	.	Atlas-SNP
ASNS	440	hgsc.bcm.edu	hg19	7	97498423	97498423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ASNS	NM_133436	exon3	c.G46C	p.V16L	ACTGAACAGAAAG	.	186.0	55.0	221.0	0.0	.	97	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113662399	113662399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	CSMD3_ENST00000343508,colon,carcinoma,0,2	CSMD3	NM_198123	exon19	c.A3184G	p.T1062A	CACAGGTTGGAAG	.	363.0	84.0	143.0	1.0	.	2325	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116616801	116616801	+	Silent	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TRPS1	NM_014112	exon4	c.A1395T	p.L465L	ATGTTCTAGCAGT	.	238.0	63.0	106.0	0.0	.	516	.	.	Atlas-SNP
OC90	729330	hgsc.bcm.edu	hg19	8	133053841	133053841	+	Missense_Mutation	SNP	C	C	A	rs372434452	alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OC90	NM_001080399	exon5	c.G275T	p.R92L	AAGTCTCGGGGGC	.	270.0	85.0	151.0	0.0	.	163	.	.	Atlas-SNP
LCN2	3934	hgsc.bcm.edu	hg19	9	130912582	130912582	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCN2	NM_005564	exon2	c.G204A	p.P68P	AGACCCGCAAAAG	.	232.0	111.0	178.0	0.0	.	12	.	.	Atlas-SNP
C9orf96	169436	hgsc.bcm.edu	hg19	9	136269044	136269044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	C9orf96	NM_153710	exon16	c.G1604T	p.G535V	CTGCAGGCTGCAT	.	49.0	14.0	34.0	0.0	.	77	.	.	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	hg19	10	94784	94784	+	Silent	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TUBB8	NM_177987	exon2	c.G126T	p.L42L	CAGCTGCAGGTGG	.	63.0	30.0	38.0	0.0	.	62	.	.	Atlas-SNP
USP54	159195	hgsc.bcm.edu	hg19	10	75277370	75277370	+	Silent	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	USP54	NM_152586	exon18	c.A2814G	p.P938P	TGACTCTGGAGAT	.	260.0	137.0	170.0	0.0	.	178	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	hg19	11	281055	281055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NLRP6	NM_138329	exon4	c.G1321C	p.D441H	CAGGGCGACCTGC	.	72.0	17.0	44.0	0.0	.	4	.	.	Atlas-SNP
BBOX1	8424	hgsc.bcm.edu	hg19	11	27137031	27137031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	BBOX1	NM_003986	exon6	c.C566A	p.A189E	TCGATGCAAACAA	.	67.0	24.0	43.0	0.0	.	46	.	.	Atlas-SNP
EFCAB4B	84766	hgsc.bcm.edu	hg19	12	3736844	3736844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	EFCAB4B	NM_001144958	exon16	c.T1764G	p.N588K	GTCCACATTCAAC	.	59.0	15.0	46.0	0.0	.	100	.	.	Atlas-SNP
CCND2	894	hgsc.bcm.edu	hg19	12	4383263	4383263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCND2	NM_001759	exon1	c.C57A	p.N19K	CCGCAACCTGCTC	.	75.0	18.0	42.0	0.0	.	50	.	.	Atlas-SNP
TMTC2	160335	hgsc.bcm.edu	hg19	12	83250808	83250808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	TMTC2	NM_152588	exon2	c.C103T	p.Q35X	ACTAATCAGGACC	.	158.0	57.0	134.0	0.0	.	100	.	.	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20215599	20215599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4Q3	NM_172194	exon1	c.C13G	p.Q5E	AAAGAACAAGATT	.	822.0	172.0	869.0	0.0	.	117	.	.	Atlas-SNP
OR4N5	390437	hgsc.bcm.edu	hg19	14	20612767	20612767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	OR4N5	NM_001004724	exon1	c.C873A	p.N291K	TCGCAACCAGGAG	.	130.0	65.0	106.0	0.0	.	72	.	.	Atlas-SNP
DDHD1	80821	hgsc.bcm.edu	hg19	14	53540463	53540463	+	Silent	SNP	A	A	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	DDHD1	NM_001160147	exon6	c.T1413C	p.D471D	ACCTCCATCAAGA	.	191.0	77.0	214.0	0.0	.	202	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64520042	64520042	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	SYNE2	NM_182914	exon48	c.C9411T	p.L3137L	AGTTCTCCAAAAC	.	169.0	68.0	213.0	0.0	.	577	.	.	Atlas-SNP
POMT2	29954	hgsc.bcm.edu	hg19	14	77746417	77746417	+	Missense_Mutation	SNP	G	G	A	rs148466370	bycluster	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	POMT2,colon,carcinoma,0,1	POMT2	NM_013382	exon17	c.C1732T	p.R578C	AGAAGCGTAGGCC	.	96.0	37.0	74.0	0.0	.	47	.	G|1.000;A|0.000	Atlas-SNP
CHRNB4	1143	hgsc.bcm.edu	hg19	15	78927919	78927919	+	Silent	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	CHRNB4,NS,carcinoma,0,2	CHRNB4	NM_000750	exon2	c.C66G	p.R22R	GGCCACGCGGCAG	.	123.0	108.0	49.0	0.0	.	59	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88472662	88472662	+	Silent	SNP	G	G	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NTRK3	NM_001012338	exon17	c.C1893A	p.A631A	CCCATGGGCCCTG	.	74.0	39.0	51.0	0.0	.	587	.	.	Atlas-SNP
IL21R	50615	hgsc.bcm.edu	hg19	16	27448870	27448870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL21R	NM_181079	exon5	c.C280A	p.H94N	TCGGCCCACAATG	.	38.0	27.0	37.0	0.0	.	95	.	.	Atlas-SNP
ZDHHC1	29800	hgsc.bcm.edu	hg19	16	67432171	67432171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZDHHC1	NM_013304	exon8	c.G871C	p.A291P	CCTTGGCCTCCTG	.	92.0	74.0	74.0	0.0	.	28	.	.	Atlas-SNP
OR1A2	26189	hgsc.bcm.edu	hg19	17	3101458	3101458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	OR1A2,NS,neuroblastoma,0,1	OR1A2	NM_012352	exon1	c.T646C	p.S216P	ATTGTCTCCTATG	.	354.0	32.0	620.0	0.0	.	52	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12896302	12896302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ELAC2	NM_018127	exon24	c.G2314C	p.A772P	CGCCAGCAAACAG	.	25.0	19.0	16.0	0.0	.	48	.	.	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	hg19	17	34072948	34072948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GAS2L2	NM_139285	exon6	c.C1568T	p.T523I	CCACTTGTAGCAC	.	27.0	9.0	14.0	0.0	.	94	.	.	Atlas-SNP
STRADA	92335	hgsc.bcm.edu	hg19	17	61784645	61784645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	STRADA	NM_001003787	exon9	c.A715G	p.K239E	GAACCTTGACACT	.	73.0	48.0	29.0	0.0	.	27	.	.	Atlas-SNP
LMAN1	3998	hgsc.bcm.edu	hg19	18	57026472	57026472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LMAN1	NM_005570	exon1	c.C5T	p.A2V	GATCCCGCCATCT	.	39.0	27.0	52.0	0.0	.	57	.	.	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	hg19	19	2120931	2120931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	AP3D1,colon,carcinoma,0,1	AP3D1	NM_001261826	exon14	c.A1411C	p.S471R	TGCTGCTGGCCAG	.	66.0	24.0	38.0	0.0	.	81	.	.	Atlas-SNP
YIPF2	78992	hgsc.bcm.edu	hg19	19	11034659	11034659	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	YIPF2	NM_024029	exon7	c.C501T	p.I167I	GATGCTGATGCCT	.	22.0	10.0	27.0	0.0	.	13	.	.	Atlas-SNP
RFX1	5989	hgsc.bcm.edu	hg19	19	14092957	14092957	+	Silent	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RFX1	NM_002918	exon5	c.C597T	p.T199T	CTGCTGGGTACCA	.	103.0	50.0	87.0	0.0	.	63	.	.	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	hg19	19	36339602	36339602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	NPHS1	NM_004646	exon9	c.G1107A	p.R369R	CAGAACCCGCGGG	.	197.0	50.0	63.0	0.0	.	165	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38378503	38378503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	WDR87	NM_031951	exon6	c.G5691C	p.Q1897H	CTTTTCCTGTGTC	.	451.0	124.0	302.0	0.0	.	191	.	.	Atlas-SNP
ZNF234	10780	hgsc.bcm.edu	hg19	19	44661606	44661606	+	Silent	SNP	C	C	G	rs182811010	bycluster;by1000genomes;alternate_allele	TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ZNF234	NM_006630	exon6	c.C1437G	p.T479T	CCATACCGGTGAG	.	148.0	42.0	126.0	0.0	.	132	.	C|0.999;T|0.001	Atlas-SNP
CCDC8	83987	hgsc.bcm.edu	hg19	19	46914889	46914889	+	Silent	SNP	C	C	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.G1179A	p.A393A	GGCCTCCGCCCTC	.	325.0	141.0	182.0	0.0	.	56	.	.	Atlas-SNP
JPH2	57158	hgsc.bcm.edu	hg19	20	42815335	42815335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	JPH2	NM_175913	exon1	c.G11T	p.G4V	AAGCGGCCCCCAC	.	15.0	11.0	9.0	0.0	.	86	.	.	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	hg19	20	58560154	58560154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CDH26	NM_177980	exon7	c.C807A	p.N269K	AGGCAACAACCAC	.	80.0	20.0	41.0	0.0	.	229	.	.	Atlas-SNP
CHAF1B	8208	hgsc.bcm.edu	hg19	21	37785409	37785409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CHAF1B	NM_005441	exon12	c.C1289A	p.P430H	GCAGCCCCGGCAC	.	54.0	20.0	35.0	0.0	.	47	.	.	Atlas-SNP
IL17REL	400935	hgsc.bcm.edu	hg19	22	50439551	50439551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL17REL	NM_001001694	exon4	c.C69G	p.C23W	CATCGCGCAGCCG	.	78.0	46.0	43.0	0.0	.	21	.	.	Atlas-SNP
GPR64	10149	hgsc.bcm.edu	hg19	X	19017392	19017392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	GPR64	NM_001184834	exon26	c.G2336T	p.W779L	TTGATCCAGCAGC	.	209.0	20.0	152.0	0.0	.	102	.	.	Atlas-SNP
RLIM	51132	hgsc.bcm.edu	hg19	X	73811891	73811891	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RLIM	NM_183353	exon5	c.T1259A	p.M420K	CTGTACATAAAAT	.	185.0	88.0	160.0	0.0	.	90	.	.	Atlas-SNP
RAB40A	142684	hgsc.bcm.edu	hg19	X	102755566	102755566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	RAB40A	NM_080879	exon3	c.A119T	p.E40V	GGGGACTCAGCTG	.	281.0	104.0	236.0	0.0	.	30	.	.	Atlas-SNP
FRMD7	90167	hgsc.bcm.edu	hg19	X	131212315	131212315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FRMD7	NM_194277	exon12	c.C1730T	p.A577V	ACAAATGCATCTT	.	245.0	113.0	202.0	0.0	.	69	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10197	10197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	.	ENST00000361227	exon1	c.G139A	p.A47T	TCCCCCGCCCGCG	.	169.0	49.0	72.0	0.0	.	.	.	.	Atlas-SNP
FKBP10	60681	hgsc.bcm.edu	hg19	17	39969300	39969301	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.,2	FKBP10	NM_021939	exon1	c.14_15insC	p.G5fs	.	.	104.0	10.0	28.0	0.0	.	57	.	.	Atlas-INDEL
IL6ST	3572	hgsc.bcm.edu	hg19	5	55260049	55260057	+	In_Frame_Del	DEL	CAATGTTGA	CAATGTTGA	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAATGTTGA	CAATGTTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	IL6ST	NM_002184	exon6	c.576_584del	p.192_195del	.	.	271.0	73.0	296.0	0.0	.	75	.	.	Atlas-Indel,Pindel
ARID1A	8289	hgsc.bcm.edu	hg19	1	27107084	27107085	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	ARID1A	NM_006015	exon20	c.6695_6696insGC	p.R2232fs	.	.	22.0	13.0	18.0	0.0	.	842	.	.	Atlas-INDEL
FAM45B	55855	hgsc.bcm.edu	hg19	X	129629661	129629666	+	RNA	DEL	CTGATG	CTGATG	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CTGATG	CTGATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	FAM45B	.	.	.	.	.	.	311.0	53.0	326.0	0.0	.	26	.	.	Atlas-Indel,Pindel
PCDH15	65217	hgsc.bcm.edu	hg19	10	56106175	56106177	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	PCDH15	NM_001142763	exon7	c.558_560del	p.186_187del	.	.	158.0	62.0	134.0	0.0	.	1715	.	.	Atlas-Indel,Pindel
LCE1E	353135	hgsc.bcm.edu	hg19	1	152759968	152759968	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	LCE1E	NM_178353	exon2	c.192delT	p.S64fs	.	.	146.0	39.0	111.0	0.0	.	26	.	.	Atlas-Indel,Pindel
KALRN	8997	hgsc.bcm.edu	hg19	3	124044866	124044867	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.,2	KALRN	NM_003947	exon7	c.1126_1127insTC	p.S376fs	.	.	241.0	25.0	107.0	0.0	.	556	.	.	Atlas-INDEL
MTRF1L	54516	hgsc.bcm.edu	hg19	6	153316373	153316374	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	MTRF1L	NM_001114184	exon3	c.421_422insAA	p.E141fs	.	.	339.0	32.0	360.0	0.0	.	21	.	.	Atlas-INDEL
CCDC8	83987	hgsc.bcm.edu	hg19	19	46914871	46914942	+	In_Frame_Del	DEL	CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT	CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT	-	novel		TCGA-CC-A123-01A-11D-A12Z-10	TCGA-CC-A123-10A-01D-A12Z-10	CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT	CTGGTCAGCTGGGGCCTCCGCCCTCTGATTATCTGCAGCCTCTTCCCTGTGGTTATCTGTGCCCTGTGACCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b962e0d4-7df3-46f3-82a3-9a9a6bf09d4b	69282336-dc29-494e-a63e-b8aef9c80bed	.	CCDC8	NM_032040	exon1	c.1127_1198del	p.376_400del	.	.	302.0	16.0	190.0	0.0	.	56	.	.	Pindel
