Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA2013	90231	hgsc.bcm.edu	hg19	1	11983301	11983301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIAA2013	NM_138346	exon2	c.T1279C	p.S427P	GGTCAGAGAGCTG	.	89.0	4.0	161.0	0.0	.	25	.	.	Atlas-SNP
IGSF21	84966	hgsc.bcm.edu	hg19	1	18691796	18691796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGSF21	NM_032880	exon6	c.A620G	p.Q207R	CCCTACAGGACAG	.	68.0	4.0	135.0	0.0	.	87	.	.	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19186095	19186095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TAS1R2	NM_152232	exon1	c.G60C	p.E20D	AGCCGGCTCAGCC	.	135.0	90.0	186.0	0.0	.	134	.	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	hg19	1	24997900	24997900	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SRRM1	NM_005839	exon16	c.A2424G	p.G808G	AGGTGGAAAGAAA	.	66.0	4.0	100.0	0.0	.	81	.	.	Atlas-SNP
SLFNL1	200172	hgsc.bcm.edu	hg19	1	41481866	41481866	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLFNL1	NM_001168247	exon6	c.A1136T	p.K379M	TTCATCTTCTCTT	.	176.0	12.0	138.0	0.0	.	37	.	.	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	hg19	1	43076653	43076653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC30	NM_001080850	exon10	c.T1388C	p.V463A	AGCATGTCAAAAG	.	65.0	4.0	82.0	0.0	.	78	.	.	Atlas-SNP
WDR65	149465	hgsc.bcm.edu	hg19	1	43649297	43649297	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDR65	NM_152498	exon4	c.T510C	p.C170C	GGTGTGTGTCACT	.	119.0	5.0	87.0	0.0	.	76	.	.	Atlas-SNP
TESK2	10420	hgsc.bcm.edu	hg19	1	45811552	45811552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TESK2	NM_007170	exon10	c.A994G	p.R332G	TACCCCTGGCTGT	.	110.0	5.0	104.0	0.0	.	60	.	.	Atlas-SNP
DMBX1	127343	hgsc.bcm.edu	hg19	1	46976674	46976674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMBX1	NM_147192	exon3	c.A416G	p.Q139R	AGCTCCAGAAGCA	.	117.0	43.0	124.0	0.0	.	50	.	.	Atlas-SNP
CDKN2C	1031	hgsc.bcm.edu	hg19	1	51436144	51436144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDKN2C	NM_001262	exon2	c.A104G	p.N35S	CACAAAATGGATT	.	94.0	4.0	89.0	0.0	.	24	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104	bycluster	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NRD1	NM_001101662	exon2	c.A449T	p.E150V	TCTTCCTCCACCT	.	233.0	36.0	235.0	0.0	.	89	.	T|0.024;A|0.976	Atlas-SNP
ACADM	34	hgsc.bcm.edu	hg19	1	76216192	76216192	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACADM	NM_001127328	exon10	c.T918C	p.Y306Y	CAAGTATGCCCTG	.	86.0	4.0	75.0	0.0	.	50	.	.	Atlas-SNP
GBP5	115362	hgsc.bcm.edu	hg19	1	89728392	89728392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GBP5	NM_052942	exon10	c.T1439C	p.L480P	TCTGTGAGAGCCT	.	75.0	4.0	102.0	0.0	.	65	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103491481	103491481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	COL11A1,NS,carcinoma,0,1	COL11A1	NM_080629	exon6	c.A808G	p.M270V	TCCTCATCTTCTT	.	35.0	2.0	63.0	0.0	.	972	.	.	Atlas-SNP
ADORA3	140	hgsc.bcm.edu	hg19	1	112033360	112033360	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	ADORA3_ENST00000369716,NS,carcinoma,0,1	ADORA3	NM_020683	exon2	c.G375A	p.G125G	AATGCACCCAGGG	.	43.0	2.0	29.0	0.0	.	104	.	.	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161989875	161989875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OLFML2B	NM_015441	exon2	c.G272T	p.R91M	TTGATCCTCTGGC	.	223.0	49.0	127.0	0.0	.	114	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	179972310	179972310	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CEP350	NM_014810	exon7	c.T1020C	p.G340G	ATTAGGTTTCAAC	.	117.0	5.0	68.0	0.0	.	418	.	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186919790	186919790	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	PLA2G4A,NS,carcinoma,0,1	PLA2G4A	NM_024420	exon13	c.A1266G	p.E422E	CACAGAAAATATT	.	73.0	3.0	38.0	0.0	.	125	.	.	Atlas-SNP
ZBTB41	360023	hgsc.bcm.edu	hg19	1	197169179	197169179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB41	NM_194314	exon1	c.T425C	p.F142S	TAAAGAAATTCAA	.	83.0	4.0	42.0	0.0	.	116	.	.	Atlas-SNP
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204401382	204401382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3C2B	NM_002646	exon28	c.C4101G	p.I1367M	ATCACTGATTCGG	.	360.0	81.0	184.0	0.0	.	142	.	.	Atlas-SNP
WDR26	80232	hgsc.bcm.edu	hg19	1	224621626	224621626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDR26	NM_001115113	exon1	c.C182T	p.P61L	GCGGAAGGCAGGA	.	4.0	4.0	1.0	0.0	.	104	.	.	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226923808	226923808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITPKB	NM_002221	exon2	c.G1352A	p.G451D	AGCAAGCCCAGCG	.	84.0	4.0	55.0	0.0	.	158	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21250701	21250701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	APOB	NM_000384	exon14	c.A2066G	p.E689G	CTTACCTCGATGA	.	98.0	4.0	92.0	0.0	.	761	.	.	Atlas-SNP
PPM1G	5496	hgsc.bcm.edu	hg19	2	27608639	27608639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPM1G	NM_177983	exon4	c.A384T	p.K128N	TTTTTCTTTTTCA	.	166.0	26.0	149.0	0.0	.	42	.	.	Atlas-SNP
PPM1G	5496	hgsc.bcm.edu	hg19	2	27608641	27608641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPM1G	NM_177983	exon4	c.A382G	p.K128E	TTTCTTTTTCATC	.	168.0	25.0	152.0	0.0	.	42	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48915345	48915345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LHCGR	NM_000233	exon11	c.A1591G	p.I531V	TCAGGATGGTTAA	.	87.0	4.0	113.0	0.0	.	154	.	.	Atlas-SNP
EFEMP1	2202	hgsc.bcm.edu	hg19	2	56145028	56145028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EFEMP1	NM_001039349	exon4	c.G289A	p.A97T	TGGTTGCCCCTGA	.	199.0	78.0	217.0	0.0	.	81	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84806671	84806671	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH6	NM_001370	exon14	c.T2097C	p.P699P	GCTTCCTCGTCAA	.	90.0	4.0	81.0	0.0	.	194	.	.	Atlas-SNP
CLASP1	23332	hgsc.bcm.edu	hg19	2	122159109	122159109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CLASP1	NM_015282	exon27	c.T2876C	p.V959A	TTTTGAACTTTTG	.	122.0	5.0	95.0	0.0	.	135	.	.	Atlas-SNP
UGGT1	56886	hgsc.bcm.edu	hg19	2	128930206	128930206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UGGT1	NM_020120	exon29	c.A3164G	p.K1055R	TTGCTAAGGGTCC	.	97.0	4.0	83.0	0.0	.	126	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141092035	141092035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRP1B	NM_018557	exon79	c.A12210G	p.L4070L	TCTCTGTAAGTTC	.	252.0	94.0	288.0	0.0	.	1315	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179628973	179628973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TTN	NM_001267550	exon43	c.A10045G	p.T3349A	GCGGGGTGATGAT	.	93.0	6.0	123.0	0.0	.	18412	.	.	Atlas-SNP
TMEFF2	23671	hgsc.bcm.edu	hg19	2	193056689	193056689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMEFF2	NM_016192	exon2	c.T199C	p.F67L	AGAGGAAGAGATC	.	91.0	4.0	86.0	0.0	.	54	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196750895	196750895	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH7	NM_018897	exon34	c.A5508G	p.R1836R	ATCATTTCTCTCC	.	100.0	4.0	58.0	0.0	.	512	.	.	Atlas-SNP
STK17B	9262	hgsc.bcm.edu	hg19	2	197021354	197021354	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STK17B	NM_004226	exon3	c.A144G	p.R48R	ACATTGTCTAACC	.	98.0	4.0	102.0	0.0	.	28	.	.	Atlas-SNP
SGOL2	151246	hgsc.bcm.edu	hg19	2	201437542	201437542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGOL2	NM_001160046	exon7	c.A2473G	p.I825V	AACCAAATATATG	.	119.0	5.0	116.0	0.0	.	126	.	.	Atlas-SNP
CYP27A1	1593	hgsc.bcm.edu	hg19	2	219646908	219646908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CYP27A1	NM_000784	exon1	c.G3C	p.M1I	ACCCATGGCTGCG	.	10.0	6.0	3.0	0.0	.	52	.	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232325414	232325414	+	Missense_Mutation	SNP	T	T	A	rs199689485	bycluster	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NCL	NM_005381	exon4	c.A777T	p.E259D	ATCATCTTCATCA	.	206.0	18.0	209.0	0.0	.	80	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233684562	233684562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GIGYF2	NM_001103147	exon23	c.A2459G	p.E820G	AGCGGGAGCAAGA	.	87.0	6.0	79.0	0.0	.	288	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238244875	238244875	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,7	COL6A3	NM_004369	exon40	c.T8868C	p.A2956A	AGCAGCAGCGGGG	.	65.0	3.0	73.0	0.0	.	608	.	.	Atlas-SNP
CAPN10	11132	hgsc.bcm.edu	hg19	2	241534647	241534647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CAPN10	NM_023085	exon7	c.G1204T	p.D402Y	GTGGGTGACAGTC	.	293.0	72.0	222.0	0.0	.	105	.	.	Atlas-SNP
NEU4	129807	hgsc.bcm.edu	hg19	2	242756278	242756278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NEU4	NM_001167599	exon3	c.G430T	p.D144Y	AGCCGTGACGCCG	.	38.0	18.0	2.0	0.0	.	39	.	.	Atlas-SNP
TRNT1	51095	hgsc.bcm.edu	hg19	3	3189269	3189269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRNT1	NM_182916	exon7	c.T938C	p.L313S	TGAGGTTGAAGAT	.	102.0	5.0	148.0	0.0	.	34	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9106232	9106232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SRGAP3	NM_014850	exon5	c.A520G	p.S174G	TGATGCTCTCTGC	.	101.0	5.0	180.0	0.0	.	146	.	.	Atlas-SNP
ZNF860	344787	hgsc.bcm.edu	hg19	3	32031946	32031946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF860	NM_001137674	exon2	c.T1375C	p.C459R	AATGAGTGTGGCA	.	33.0	4.0	49.0	0.0	.	96	.	.	Atlas-SNP
ZNF662	389114	hgsc.bcm.edu	hg19	3	42954744	42954744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF662	NM_207404	exon4	c.A203G	p.E68G	TGGAAGAGCCATT	.	62.0	4.0	127.0	0.0	.	112	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46021198	46021198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FYCO1	NM_024513	exon4	c.A287G	p.E96G	CTTACCTCTGAGA	.	125.0	5.0	210.0	0.0	.	115	.	.	Atlas-SNP
P4HTM	54681	hgsc.bcm.edu	hg19	3	49041657	49041657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	P4HTM	NM_177938	exon5	c.A851G	p.E284G	AGGGTGAGGGTGC	.	35.0	4.0	96.0	0.0	.	71	.	.	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	hg19	3	56667646	56667646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM208A	NM_001112736	exon18	c.T3173C	p.M1058T	CGTTTCATCTTCT	.	26.0	4.0	38.0	0.0	.	113	.	.	Atlas-SNP
DNAH12	201625	hgsc.bcm.edu	hg19	3	57343779	57343779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAH12	NM_178504	exon53	c.T8396C	p.L2799P	TGGGTGAGGAGCA	.	93.0	4.0	150.0	0.0	.	182	.	.	Atlas-SNP
SLMAP	7871	hgsc.bcm.edu	hg19	3	57846497	57846497	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLMAP	NM_007159	exon8	c.A759G	p.T253T	GACAACAGCCAAA	.	115.0	5.0	158.0	0.0	.	46	.	.	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69079080	69079080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMF1	NM_007114	exon11	c.A2480G	p.Q827R	GACATCTGAATTT	.	77.0	4.0	132.0	0.0	.	77	.	.	Atlas-SNP
CNTN3	5067	hgsc.bcm.edu	hg19	3	74418520	74418520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CNTN3	NM_020872	exon7	c.A766G	p.I256V	GAGGTATGGGACT	.	81.0	4.0	184.0	0.0	.	174	.	.	Atlas-SNP
PROS1	5627	hgsc.bcm.edu	hg19	3	93611837	93611837	+	Silent	SNP	A	A	G	rs199469491	bycluster;by1000genomes;alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PROS1	NM_000313	exon10	c.T1095C	p.N365N	ATGTTCATTCTTA	.	421.0	172.0	371.0	0.0	.	126	.	A|0.999;C|0.001	Atlas-SNP
OR5H6	79295	hgsc.bcm.edu	hg19	3	97983495	97983495	+	Missense_Mutation	SNP	A	A	C	rs149984587		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR5H6	NM_001005479	exon1	c.A367C	p.T123P	GTAACCACTGTAA	.	126.0	6.0	125.0	0.0	.	89	.	.	Atlas-SNP
HCLS1	3059	hgsc.bcm.edu	hg19	3	121351335	121351335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	HCLS1,NS,carcinoma,0,1	HCLS1	NM_005335	exon12	c.G1084C	p.A362P	GCTCTGCTTCGTA	.	134.0	10.0	103.0	0.0	.	78	.	.	Atlas-SNP
KLF15	28999	hgsc.bcm.edu	hg19	3	126071499	126071499	+	Silent	SNP	G	G	A	rs376071138		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLF15	NM_014079	exon2	c.C267T	p.G89G	GCCCCCGCCACTG	.	130.0	60.0	64.0	0.0	.	40	.	.	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	hg19	3	127379378	127379378	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PODXL2	NM_015720	exon3	c.A507G	p.E169E	AGAGGAAGAGGAG	.	72.0	4.0	68.0	0.0	.	53	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129546658	129546658	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMCC1	NM_001017395	exon3	c.A564G	p.G188G	CGCAGTTCCCTCC	.	80.0	5.0	58.0	0.0	.	105	.	.	Atlas-SNP
PIK3R4	30849	hgsc.bcm.edu	hg19	3	130449233	130449233	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIK3R4	NM_014602	exon5	c.T1504C	p.L502L	TTTTTAACTGTAC	.	86.0	4.0	85.0	0.0	.	145	.	.	Atlas-SNP
SERPINI1	5274	hgsc.bcm.edu	hg19	3	167506954	167506954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SERPINI1	NM_005025	exon2	c.A38G	p.Q13R	TTCTGCAAAGTAT	.	75.0	4.0	67.0	0.0	.	52	.	.	Atlas-SNP
GOLIM4	27333	hgsc.bcm.edu	hg19	3	167747641	167747641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,1	GOLIM4	NM_014498	exon10	c.G1360C	p.V454L	TTGCCACCTGCTG	.	67.0	7.0	75.0	0.0	.	71	.	.	Atlas-SNP
KLHL24	54800	hgsc.bcm.edu	hg19	3	183381420	183381420	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KLHL24	NM_017644	exon4	c.T1095C	p.I365I	TGACATTCTTGTT	.	71.0	4.0	95.0	0.0	.	56	.	.	Atlas-SNP
FBXL5	26234	hgsc.bcm.edu	hg19	4	15629615	15629615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FBXL5	NM_012161	exon7	c.A934G	p.M312V	TTTCCATTTGTGC	.	82.0	4.0	86.0	0.0	.	52	.	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	hg19	4	47685795	47685795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CORIN	NM_006587	exon7	c.G974A	p.C325Y	CCATCACACACAA	.	67.0	4.0	60.0	0.0	.	154	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48545872	48545872	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FRYL	NM_015030	exon44	c.T5544C	p.V1848V	GGAGAGAACATCA	.	90.0	4.0	68.0	0.0	.	242	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54265931	54265931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FIP1L1	NM_030917	exon10	c.A740G	p.E247G	AGAAAGAAACTGC	.	87.0	5.0	108.0	0.0	.	60	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62936570	62936570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LPHN3	NM_015236	exon23	c.G4354A	p.G1452R	AAAGATGGGACCC	.	83.0	32.0	90.0	0.0	.	800	.	.	Atlas-SNP
MTHFD2L	441024	hgsc.bcm.edu	hg19	4	75023925	75023925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MTHFD2L	NM_001144978	exon1	c.A70G	p.S24G	GGCAGAAGCACAG	.	101.0	5.0	36.0	0.0	.	41	.	.	Atlas-SNP
ART3	419	hgsc.bcm.edu	hg19	4	77003153	77003153	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ART3	NM_001130017	exon3	c.T246C	p.T82T	AAAGACTCAAATC	.	61.0	4.0	62.0	0.0	.	34	.	.	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77663055	77663055	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SHROOM3	NM_020859	exon5	c.T3729C	p.S1243S	GTCATCTCCCGCC	.	153.0	8.0	148.0	0.0	.	134	.	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	hg19	4	90844418	90844418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MMRN1	NM_007351	exon4	c.A950G	p.D317G	GTGGTGACCCAGG	.	123.0	5.0	118.0	0.0	.	174	.	.	Atlas-SNP
GSTCD	79807	hgsc.bcm.edu	hg19	4	106650634	106650634	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GSTCD	NM_001031720	exon5	c.T1218C	p.P406P	TCTCCCTGCAGCA	.	95.0	4.0	96.0	0.0	.	69	.	.	Atlas-SNP
NAF1	92345	hgsc.bcm.edu	hg19	4	164058390	164058390	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NAF1	NM_138386	exon6	c.A891G	p.S297S	TGCATCTGATCCC	.	69.0	4.0	144.0	0.0	.	69	.	.	Atlas-SNP
CEP44	80817	hgsc.bcm.edu	hg19	4	175224972	175224972	+	Missense_Mutation	SNP	A	A	G	rs143573166	bycluster;alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CEP44	NM_001040157	exon5	c.A356G	p.K119R	TGAAAAAGCACAA	.	96.0	4.0	166.0	0.0	.	35	.	A|1.000;C|0.000	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	hg19	4	186544675	186544675	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	SORBS2,NS,haematopoietic_neoplasm,0,1	SORBS2	NM_001270771	exon16	c.C2196T	p.S732S	GCTTTCGGAGGAT	.	45.0	2.0	59.0	0.0	.	300	.	.	Atlas-SNP
CDH6	1004	hgsc.bcm.edu	hg19	5	31305284	31305284	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH6	NM_004932	exon7	c.T1003C	p.L335L	AAGCTCTTGGACT	.	54.0	5.0	61.0	0.0	.	175	.	.	Atlas-SNP
RANBP3L	202151	hgsc.bcm.edu	hg19	5	36301506	36301506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RANBP3L	NM_001161429	exon1	c.C13T	p.P5S	TTCTTGGTATGGT	.	75.0	4.0	86.0	0.0	.	41	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37183712	37183712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C5orf42	NM_023073	exon26	c.A4571G	p.K1524R	TCTTCTTTCTTTG	.	68.0	4.0	90.0	0.0	.	422	.	.	Atlas-SNP
FBXO4	26272	hgsc.bcm.edu	hg19	5	41941379	41941379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	FBXO4,NS,carcinoma,0,1	FBXO4	NM_012176	exon7	c.G1160A	p.R387K	GTGCAAGATGATT	.	97.0	4.0	112.0	0.0	.	42	.	.	Atlas-SNP
ITGA1	3672	hgsc.bcm.edu	hg19	5	52214692	52214692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ITGA1	NM_181501	exon16	c.A2119G	p.K707E	GATGTGAAATTAA	.	90.0	5.0	81.0	0.0	.	112	.	.	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64466487	64466487	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ADAMTS6	NM_197941	exon24	c.G3201A	p.Q1067Q	TTCACACTGCTGC	.	98.0	4.0	106.0	0.0	.	174	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86665661	86665661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASA1	NM_002890	exon12	c.T1642A	p.F548I	CAGCACTTTAGTG	.	142.0	10.0	203.0	0.0	.	213	.	.	Atlas-SNP
RIOK2	55781	hgsc.bcm.edu	hg19	5	96514829	96514829	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RIOK2	NM_001159749	exon2	c.A135G	p.K45K	ACCATGTTTAAGG	.	48.0	4.0	51.0	0.0	.	82	.	.	Atlas-SNP
KLHL3	26249	hgsc.bcm.edu	hg19	5	136963985	136963985	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	KLHL3,NS,carcinoma,0,1	KLHL3	NM_017415	exon14	c.1591+1G>T	.	TCATTACCTGCGT	.	93.0	42.0	99.0	0.0	.	54	.	.	Atlas-SNP
HBEGF	1839	hgsc.bcm.edu	hg19	5	139725515	139725515	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HBEGF	NM_001945	exon2	c.A201G	p.A67A	CAGATCTGCCTCT	.	124.0	5.0	188.0	0.0	.	12	.	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	hg19	5	140559337	140559337	+	Silent	SNP	C	C	T	rs374710779		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	PCDHB8,NS,carcinoma,0,1	PCDHB8	NM_019120	exon1	c.C1722T	p.T574T	CTGCACCGAGCTG	.	99.0	4.0	23.0	0.0	.	199	.	.	Atlas-SNP
HMGXB3	22993	hgsc.bcm.edu	hg19	5	149390055	149390055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HMGXB3	NM_014983	exon4	c.A694G	p.T232A	TACCAGACAAGCC	.	99.0	4.0	124.0	0.0	.	31	.	.	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	hg19	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208	bycluster	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	242.0	25.0	3.0	0.0	.	84	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167689611	167689611	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001122679	exon29	c.C8094G	p.A2698A	CACGGCCTGGGCC	.	63.0	26.0	60.0	0.0	.	.	.	.	Atlas-SNP
CAGE1	285782	hgsc.bcm.edu	hg19	6	7366104	7366104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CAGE1	NM_001170693	exon8	c.A2018G	p.K673R	CTATCTTTATGTT	.	59.0	4.0	71.0	0.0	.	165	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7580098	7580098	+	Silent	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DSP	NM_004415	exon23	c.C3675G	p.S1225S	GATATCCATGCAA	.	91.0	39.0	116.0	0.0	.	306	.	.	Atlas-SNP
ALDH5A1	7915	hgsc.bcm.edu	hg19	6	24523152	24523152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	ALDH5A1,colon,carcinoma,0,1	ALDH5A1	NM_170740	exon8	c.A1211G	p.K404R	TAGAAAAGGTAAG	.	30.0	2.0	30.0	0.0	.	42	.	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31931312	31931312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SKIV2L	NM_006929	exon14	c.C1526T	p.S509F	TGGACTCCCGAGG	.	102.0	5.0	136.0	0.0	.	97	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32187547	32187547	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NOTCH4	NM_004557	exon8	c.T1332C	p.S444S	ACAGGGACTTGGG	.	118.0	5.0	151.0	0.0	.	201	.	.	Atlas-SNP
PTK7	5754	hgsc.bcm.edu	hg19	6	43097478	43097478	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTK7	NM_001270398	exon3	c.T405C	p.G135G	GGCAGGTCCTGTG	.	85.0	4.0	134.0	0.0	.	101	.	.	Atlas-SNP
MAD2L1BP	9587	hgsc.bcm.edu	hg19	6	43604135	43604135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAD2L1BP	NM_001003690	exon3	c.A160G	p.K54E	TATGAGAAGTCCG	.	100.0	4.0	82.0	0.0	.	12	.	.	Atlas-SNP
CRISP3	10321	hgsc.bcm.edu	hg19	6	49705125	49705125	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CRISP3	NM_001190986	exon2	c.T54C	p.G18G	AACAAAACCGGTG	.	115.0	5.0	137.0	0.0	.	67	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	64498005	64498005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EYS	NM_001142800	exon39	c.T7716C	p.G2572G	TTGAAAACCATTT	.	56.0	5.0	58.0	0.0	.	527	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76388329	76388329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SENP6	NM_015571	exon15	c.A1879G	p.S627G	CTTAGAAGCAAAC	.	99.0	4.0	120.0	0.0	.	189	.	.	Atlas-SNP
ME1	4199	hgsc.bcm.edu	hg19	6	84108172	84108172	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ME1	NM_002395	exon3	c.T276C	p.S92S	AATGTCAGATGTC	.	99.0	4.0	128.0	0.0	.	68	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84371275	84371275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNAP91	NM_001242794	exon5	c.A398G	p.E133G	GCCTTTTCATTCA	.	72.0	4.0	134.0	0.0	.	199	.	.	Atlas-SNP
MANEA	79694	hgsc.bcm.edu	hg19	6	96052708	96052708	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MANEA	NM_024641	exon4	c.T660C	p.T220T	GGTTACTTTTCAC	.	92.0	4.0	171.0	0.0	.	58	.	.	Atlas-SNP
HACE1	57531	hgsc.bcm.edu	hg19	6	105244550	105244550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HACE1	NM_020771	exon9	c.G796A	p.E266K	GGTCTTCATTCTG	.	44.0	23.0	114.0	0.0	.	96	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106960807	106960807	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AIM1	NM_001624	exon1	c.A591G	p.R197R	AAGCAGAGAGCTG	.	79.0	4.0	81.0	0.0	.	161	.	.	Atlas-SNP
SNX3	8724	hgsc.bcm.edu	hg19	6	108544209	108544209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SNX3	NM_003795	exon2	c.G203A	p.R68K	CTTCTTCTAACAG	.	50.0	4.0	71.0	0.0	.	11	.	.	Atlas-SNP
DCBLD1	285761	hgsc.bcm.edu	hg19	6	117861869	117861869	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCBLD1	NM_173674	exon10	c.A1140G	p.Q380Q	AGTGCAAAACAAT	.	95.0	4.0	131.0	0.0	.	56	.	.	Atlas-SNP
HDDC2	51020	hgsc.bcm.edu	hg19	6	125619942	125619942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HDDC2	NM_016063	exon3	c.T227C	p.V76A	TCATGAACCAGGG	.	89.0	4.0	131.0	0.0	.	21	.	.	Atlas-SNP
ENPP3	5169	hgsc.bcm.edu	hg19	6	132047295	132047295	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ENPP3	NM_005021	exon20	c.A1908G	p.K636K	TGGAAAAGCTATG	.	98.0	4.0	156.0	0.0	.	117	.	.	Atlas-SNP
NHSL1	57224	hgsc.bcm.edu	hg19	6	138753581	138753581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NHSL1	NM_020464	exon5	c.A1913G	p.H638R	ACGCTGTGCCTGG	.	75.0	4.0	128.0	0.0	.	99	.	.	Atlas-SNP
ZC3H12D	340152	hgsc.bcm.edu	hg19	6	149783104	149783104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZC3H12D	NM_207360	exon3	c.A308G	p.H103R	TTTCCATGGCTAC	.	41.0	4.0	94.0	0.0	.	21	.	.	Atlas-SNP
KATNA1	11104	hgsc.bcm.edu	hg19	6	149959680	149959680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	KATNA1,NS,carcinoma,0,1	KATNA1	NM_007044	exon2	c.A4G	p.S2G	GAAGACTCATGTT	.	57.0	3.0	93.0	0.0	.	34	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151161732	151161732	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLEKHG1	NM_001029884	exon17	c.A3858G	p.E1286E	GTCAGAAGAAGAT	.	97.0	4.0	157.0	0.0	.	97	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152763360	152763360	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE1	NM_033071	exon31	c.A3879G	p.S1293S	CTTTGCTGAGATC	.	73.0	4.0	107.0	0.0	.	3227	.	.	Atlas-SNP
SLC22A3	6581	hgsc.bcm.edu	hg19	6	160857848	160857848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC22A3	NM_021977	exon6	c.T1012C	p.F338L	CCATCCTTTTTAG	.	100.0	4.0	130.0	0.0	.	58	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2552910	2552910	+	Missense_Mutation	SNP	A	A	G	rs199517402		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LFNG	NM_001166355	exon2	c.A167G	p.E56G	TGGATGAGTGGAG	.	110.0	6.0	94.0	0.0	.	57	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2552911	2552911	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LFNG	NM_001166355	exon2	c.G168A	p.E56E	GGATGAGTGGAGC	.	110.0	5.0	94.0	0.0	.	57	.	.	Atlas-SNP
PAPOLB	56903	hgsc.bcm.edu	hg19	7	4900926	4900926	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PAPOLB	NM_020144	exon1	c.A516G	p.A172A	TAATCTTGCAAAT	.	54.0	4.0	67.0	0.0	.	93	.	.	Atlas-SNP
BBS9	27241	hgsc.bcm.edu	hg19	7	33217138	33217138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BBS9	NM_014451	exon5	c.T377C	p.M126T	AATTGATGTATGA	.	70.0	4.0	64.0	0.0	.	194	.	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73011792	73011792	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MLXIPL	NM_032954	exon9	c.T1323C	p.P441P	GGCAGGAGGGACG	.	89.0	4.0	90.0	0.0	.	54	.	.	Atlas-SNP
RFC2	5982	hgsc.bcm.edu	hg19	7	73646540	73646540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RFC2	NM_181471	exon11	c.G961A	p.G321R	TGTATCCAATTTC	.	91.0	4.0	77.0	0.0	.	27	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82580361	82580361	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PCLO	NM_014510	exon6	c.T9543C	p.V3181V	AGTGGGAACAGAG	.	100.0	4.0	90.0	0.0	.	1506	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94035575	94035575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL1A2	NM_000089	exon12	c.T554C	p.L185P	ATGGTCTGGATGG	.	91.0	4.0	68.0	0.0	.	240	.	.	Atlas-SNP
SLC26A5	375611	hgsc.bcm.edu	hg19	7	103050911	103050911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC26A5	NM_206883	exon7	c.T656C	p.V219A	ACATGCACAGCTG	.	113.0	5.0	104.0	0.0	.	231	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103162472	103162472	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RELN	NM_173054	exon48	c.T7665C	p.S2555S	CACCCCACTGAAA	.	75.0	4.0	57.0	0.0	.	593	.	.	Atlas-SNP
MET	4233	hgsc.bcm.edu	hg19	7	116371722	116371722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MET	NM_000245	exon3	c.A1201G	p.T401A	TTCCAGACACTTC	.	90.0	4.0	93.0	0.0	.	412	.	.	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	hg19	7	127992597	127992597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PRRT4	NM_001174164	exon6	c.A1013G	p.E338G	GGCGCCTCGGGAG	.	94.0	4.0	74.0	0.0	.	31	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128452197	128452197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC136	NM_022742	exon13	c.A2372G	p.D791G	GCTATGACAGCAG	.	103.0	5.0	110.0	0.0	.	170	.	.	Atlas-SNP
DGKI	9162	hgsc.bcm.edu	hg19	7	137374712	137374712	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DGKI	NM_004717	exon2	c.T438C	p.A146A	TGCAGGAGCCAGA	.	87.0	5.0	75.0	0.0	.	335	.	.	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	hg19	7	149129992	149129992	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF777	NM_015694	exon6	c.C1371T	p.D457D	CTCCTCGTCTTGT	.	143.0	63.0	141.0	0.0	.	63	.	.	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	hg19	8	13357252	13357252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DLC1	NM_182643	exon2	c.T329C	p.V110A	TCAGAAACATGCA	.	89.0	4.0	91.0	0.0	.	411	.	.	Atlas-SNP
PIWIL2	55124	hgsc.bcm.edu	hg19	8	22172606	22172606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PIWIL2	NM_001135721	exon18	c.T2156C	p.L719P	TTTTACTTCAGAT	.	92.0	4.0	158.0	0.0	.	100	.	.	Atlas-SNP
ERLIN2	11160	hgsc.bcm.edu	hg19	8	37611578	37611578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ERLIN2	NM_007175	exon12	c.A965G	p.K322R	CTGACAAGCTAAG	.	95.0	4.0	140.0	0.0	.	27	.	.	Atlas-SNP
BRF2	55290	hgsc.bcm.edu	hg19	8	37702706	37702706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BRF2	NM_018310	exon4	c.T562C	p.S188P	GCACAGAAGGTGA	.	97.0	4.0	187.0	0.0	.	33	.	.	Atlas-SNP
SGK3	23678	hgsc.bcm.edu	hg19	8	67752280	67752280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SGK3	NM_001033578	exon11	c.A784G	p.R262G	GAGCACAGAGCTA	.	75.0	4.0	85.0	0.0	.	92	.	.	Atlas-SNP
CSPP1	79848	hgsc.bcm.edu	hg19	8	68070772	68070772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CSPP1	NM_024790	exon18	c.G2317A	p.A773T	CAGAGGGCACGAA	.	83.0	4.0	104.0	0.0	.	129	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77766356	77766356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZFHX4	NM_024721	exon10	c.A7199G	p.E2400G	AACCTGAGAAGAC	.	91.0	4.0	92.0	0.0	.	878	.	.	Atlas-SNP
MATN2	4147	hgsc.bcm.edu	hg19	8	98943556	98943556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MATN2	NM_002380	exon3	c.C518G	p.P173R	GGAGACCTCAGGA	.	95.0	18.0	73.0	0.0	.	165	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	hg19	8	133492571	133492571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KCNQ3	NM_004519	exon1	c.A209G	p.E70G	CCGCCCTCCAGCA	.	73.0	4.0	1.0	0.0	.	164	.	.	Atlas-SNP
MROH6	642475	hgsc.bcm.edu	hg19	8	144650754	144650754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001100878	exon10	c.C1612T	p.R538C	GCAGGCGCAGCAG	.	17.0	5.0	1.0	0.0	.	.	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	441995	441995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DOCK8	NM_203447	exon42	c.T5476C	p.S1826P	GAGATCTCACATA	.	51.0	4.0	50.0	0.0	.	401	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2039815	2039815	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMARCA2	NM_139045	exon4	c.G705A	p.Q235Q	GCAGCAGCAACAG	.	97.0	6.0	94.0	0.0	.	313	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35700292	35700292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TLN1	NM_006289	exon49	c.A6556G	p.T2186A	TGGCGGTTGCCAT	.	100.0	4.0	138.0	0.0	.	185	.	.	Atlas-SNP
GNE	10020	hgsc.bcm.edu	hg19	9	36246060	36246060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GNE	NM_001128227	exon3	c.A677G	p.K226R	TAGTCTTTGTTCT	.	93.0	4.0	81.0	0.0	.	141	.	.	Atlas-SNP
PTAR1	375743	hgsc.bcm.edu	hg19	9	72356709	72356709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTAR1	NM_001099666	exon3	c.A322G	p.R108G	CATACCTCACGTT	.	98.0	5.0	85.0	0.0	.	46	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79834895	79834895	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VPS13A	NM_001018038	exon11	c.C780T	p.A260A	TAATGCCAAACTT	.	75.0	4.0	93.0	0.0	.	735	.	.	Atlas-SNP
RASEF	158158	hgsc.bcm.edu	hg19	9	85627416	85627416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASEF	NM_152573	exon5	c.A776G	p.Q259R	TTTGATTGTTCTT	.	77.0	4.0	74.0	0.0	.	69	.	.	Atlas-SNP
IARS	3376	hgsc.bcm.edu	hg19	9	95050074	95050074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IARS	NM_013417	exon4	c.A395G	p.K132R	CATACCTTCCACT	.	136.0	6.0	143.0	0.0	.	74	.	.	Atlas-SNP
FAM22F	54754	hgsc.bcm.edu	hg19	9	97080944	97080944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM22F	NM_017561	exon7	c.C2074G	p.P692A	TGGCAGGAGAAGG	.	390.0	17.0	377.0	0.0	.	72	.	.	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	hg19	9	111644428	111644428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IKBKAP	NM_003640	exon30	c.G3262A	p.A1088T	CCCAGGCAGCTCC	.	94.0	4.0	93.0	0.0	.	122	.	.	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	hg19	9	111735058	111735058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CTNNAL1	NM_003798	exon9	c.A1244G	p.H415R	ACCACATGATCAG	.	82.0	4.0	88.0	0.0	.	51	.	.	Atlas-SNP
ZBTB6	10773	hgsc.bcm.edu	hg19	9	125673934	125673934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZBTB6	NM_006626	exon2	c.A418G	p.T140A	GGTCAGTGTGTTG	.	55.0	4.0	75.0	0.0	.	32	.	.	Atlas-SNP
DOLPP1	57171	hgsc.bcm.edu	hg19	9	131847308	131847308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DOLPP1	NM_001135917	exon3	c.T184C	p.F62L	ATCTCCTTCCTTG	.	64.0	4.0	57.0	0.0	.	17	.	.	Atlas-SNP
FAM78A	286336	hgsc.bcm.edu	hg19	9	134136640	134136640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM78A	NM_033387	exon2	c.A421G	p.T141A	TGCAGGTCTCTGT	.	69.0	4.0	76.0	0.0	.	28	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139358965	139358965	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SEC16A	NM_014866	exon9	c.T4353C	p.C1451C	CCTGGCACAGACA	.	78.0	4.0	78.0	0.0	.	249	.	.	Atlas-SNP
ASB13	79754	hgsc.bcm.edu	hg19	10	5691033	5691033	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ASB13	NM_024701	exon4	c.C417T	p.V139V	GGCCCCGACGTCA	.	105.0	61.0	98.0	0.0	.	26	.	.	Atlas-SNP
UBE2D1	7321	hgsc.bcm.edu	hg19	10	60123367	60123367	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	UBE2D1	NM_001204880	exon3	c.7-2A>G	.	AATTTCAGCCTGA	.	111.0	5.0	76.0	0.0	.	16	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76790247	76790247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_012330	exon18	c.A5665G	p.M1889V	CCTCCAATGAATC	.	216.0	73.0	106.0	0.0	.	.	.	.	Atlas-SNP
ATAD1	84896	hgsc.bcm.edu	hg19	10	89544340	89544340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATAD1	NM_032810	exon5	c.T470C	p.L157P	GGCTGAAGGTTAA	.	89.0	5.0	108.0	0.0	.	32	.	.	Atlas-SNP
IFIT5	24138	hgsc.bcm.edu	hg19	10	91177501	91177501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IFIT5	NM_012420	exon2	c.T545C	p.I182T	ATGCTATCACAGT	.	92.0	4.0	191.0	0.0	.	32	.	.	Atlas-SNP
IFIT5	24138	hgsc.bcm.edu	hg19	10	91177909	91177909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IFIT5	NM_012420	exon2	c.A953G	p.E318G	TTGATGAGCTGAT	.	95.0	4.0	111.0	0.0	.	32	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94274762	94274762	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IDE	NM_004969	exon5	c.A699G	p.E233E	AATGCCTTCTTGG	.	64.0	4.0	108.0	0.0	.	77	.	.	Atlas-SNP
CCNJ	54619	hgsc.bcm.edu	hg19	10	97816897	97816897	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCNJ	NM_001134375	exon5	c.T633C	p.A211A	TGTGGCTTCTTCG	.	133.0	6.0	293.0	0.0	.	27	.	.	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	hg19	10	102256018	102256018	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	SEC31B,colon,carcinoma,0,1	SEC31B	NM_015490	exon18	c.T2307C	p.A769A	TACCTGAGCACAG	.	96.0	4.0	127.0	0.0	.	84	.	.	Atlas-SNP
POLL	27343	hgsc.bcm.edu	hg19	10	103347044	103347044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	POLL	NM_013274	exon2	c.T74C	p.L25P	TTTGCAAGTACTT	.	86.0	4.0	125.0	0.0	.	43	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106865182	106865182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SORCS3	NM_014978	exon7	c.A1121G	p.Q374R	GGATCCAGGAATG	.	92.0	4.0	167.0	0.0	.	282	.	.	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	hg19	10	113940243	113940243	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPAM	NM_001244949	exon4	c.T213C	p.T71T	CTGGGGAGTGCAG	.	47.0	4.0	92.0	0.0	.	68	.	.	Atlas-SNP
VWA2	340706	hgsc.bcm.edu	hg19	10	116045937	116045937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	VWA2	NM_001272046	exon11	c.A1237G	p.I413V	GATGGCATTCCCT	.	72.0	4.0	115.0	0.0	.	64	.	.	Atlas-SNP
FANK1	92565	hgsc.bcm.edu	hg19	10	127697829	127697829	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FANK1	NM_145235	exon10	c.C966T	p.D322D	TTTTGACAGACAG	.	58.0	5.0	106.0	0.0	.	46	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129907660	129907660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MKI67	NM_002417	exon13	c.A2444G	p.N815S	GCTGCATTCTGTG	.	95.0	4.0	122.0	0.0	.	363	.	.	Atlas-SNP
TUBGCP2	10844	hgsc.bcm.edu	hg19	10	135111545	135111545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TUBGCP2	NM_006659	exon5	c.T527C	p.I176T	GGGAAGATGGGGA	.	100.0	5.0	222.0	0.0	.	79	.	.	Atlas-SNP
PSMD13	5719	hgsc.bcm.edu	hg19	11	248788	248788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PSMD13	NM_175932	exon6	c.A587G	p.Q196R	AGCAGCAGGAGAG	.	72.0	4.0	119.0	0.0	.	53	.	.	Atlas-SNP
IFITM3	10410	hgsc.bcm.edu	hg19	11	320723	320723	+	Missense_Mutation	SNP	C	C	T	rs56227617		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	IFITM3,brain,glioma,0,1	IFITM3	NM_021034	exon1	c.G91A	p.V31M	CCAGCACAGCCAC	.	58.0	3.0	96.0	1.0	.	132	.	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4592711	4592711	+	Missense_Mutation	SNP	T	T	A	rs78543312		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C11orf40	NM_144663	exon4	c.A596T	p.N199I	ATACAGTTTTTCC	.	133.0	10.0	155.0	0.0	.	37	.	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4592712	4592712	+	Missense_Mutation	SNP	T	T	G	rs78387367	bycluster	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C11orf40	NM_144663	exon4	c.A595C	p.N199H	TACAGTTTTTCCC	.	130.0	7.0	154.0	0.0	.	37	.	.	Atlas-SNP
ARFIP2	23647	hgsc.bcm.edu	hg19	11	6501574	6501574	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARFIP2	NM_012402	exon2	c.T78C	p.P26P	ATCTTCAGGAAGC	.	70.0	4.0	132.0	0.0	.	23	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6662744	6662744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCHS1	NM_003737	exon2	c.G101T	p.G34V	CCAGCCCCCAGCA	.	31.0	6.0	53.0	0.0	.	277	.	.	Atlas-SNP
MRVI1	10335	hgsc.bcm.edu	hg19	11	10647928	10647928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MRVI1	NM_130385	exon9	c.T953C	p.L318P	CTGTTCAGGGCCA	.	91.0	4.0	176.0	0.0	.	113	.	.	Atlas-SNP
USP47	55031	hgsc.bcm.edu	hg19	11	11941963	11941963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP47	NM_017944	exon9	c.G936A	p.M312I	AACCATGCATAGG	.	58.0	4.0	102.0	0.0	.	91	.	.	Atlas-SNP
NUCB2	4925	hgsc.bcm.edu	hg19	11	17352479	17352479	+	Nonsense_Mutation	SNP	C	C	T	rs189362726		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NUCB2	NM_005013	exon13	c.C1204T	p.Q402X	AAATTACAACAAG	.	16.0	6.0	1.0	0.0	.	31	.	.	Atlas-SNP
NUCB2	4925	hgsc.bcm.edu	hg19	11	17352480	17352480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NUCB2	NM_005013	exon13	c.A1205T	p.Q402L	AATTACAACAAGG	.	14.0	6.0	1.0	0.0	.	31	.	.	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	hg19	11	22381052	22381052	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC17A6	NM_020346	exon4	c.A552G	p.R184R	TGTCAGAATACTG	.	96.0	4.0	139.0	0.0	.	135	.	.	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	hg19	11	32977609	32977609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	QSER1	NM_001076786	exon7	c.A4306G	p.K1436E	AACAAGAAGGAAT	.	71.0	4.0	115.0	0.0	.	153	.	.	Atlas-SNP
NAT10	55226	hgsc.bcm.edu	hg19	11	34145347	34145347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NAT10	NM_024662	exon10	c.A953G	p.N318S	CTGATAACCTCCA	.	99.0	4.0	178.0	0.0	.	78	.	.	Atlas-SNP
EXT2	2132	hgsc.bcm.edu	hg19	11	44228357	44228357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	EXT2_ENST00000358681,NS,carcinoma,0,2	EXT2	NM_000401	exon10	c.A1609G	p.K537E	TGGCCCAAAATCC	.	39.0	2.0	67.0	0.0	.	129	.	.	Atlas-SNP
LRTOMT	220074	hgsc.bcm.edu	hg19	11	71819858	71819858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LRTOMT	NM_001145309	exon9	c.C763A	p.Q255K	TTCTTGCAGTATG	.	125.0	45.0	108.0	0.0	.	20	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103018563	103018563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DYNC2H1	NM_001377	exon19	c.T2765C	p.L922P	ATGATCTCATCCA	.	64.0	4.0	41.0	0.0	.	246	.	.	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130780180	130780180	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	SNX19,NS,carcinoma,0,1	SNX19	NM_014758	exon3	c.A1899G	p.L633L	TGATTCTAGGAGG	.	47.0	2.0	66.0	0.0	.	84	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2764398	2764398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CACNA1C	NM_199460	exon36	c.T4370C	p.L1457P	TGCTCCTCTTCAG	.	91.0	4.0	92.0	0.0	.	1023	.	.	Atlas-SNP
CLECL1	160365	hgsc.bcm.edu	hg19	12	9885707	9885707	+	Missense_Mutation	SNP	A	A	T	rs113575400		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,2	CLECL1	NM_001267701	exon1	c.T154A	p.S52T	CTTCTGATAAGTA	.	99.0	9.0	108.0	0.0	.	18	.	T|1.000;|0.000	Atlas-SNP
CLECL1	160365	hgsc.bcm.edu	hg19	12	9885713	9885713	+	Missense_Mutation	SNP	A	A	T	rs200639830	bycluster	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CLECL1	NM_001267701	exon1	c.T148A	p.Y50N	ATAAGTAAATTGA	.	103.0	9.0	110.0	0.0	.	18	.	.	Atlas-SNP
SLCO1B3	28234	hgsc.bcm.edu	hg19	12	21068948	21068948	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLCO1B3	NM_019844	exon16	c.T1876C	p.L626L	GTCTACTTGGGCT	.	58.0	5.0	59.0	0.0	.	151	.	.	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30814173	30814173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	IPO8,NS,carcinoma,0,1	IPO8	NM_006390	exon16	c.A1783G	p.S595G	CATCACTTTGAAG	.	45.0	2.0	70.0	0.0	.	105	.	.	Atlas-SNP
TMEM106C	79022	hgsc.bcm.edu	hg19	12	48359893	48359893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TMEM106C	NM_001143843	exon5	c.T433C	p.S145P	AGGAACTCCAACT	.	94.0	4.0	122.0	0.0	.	24	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48372091	48372091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	COL2A1	NM_001844	exon43	c.G2986A	p.G996S	GCAAGCCAGGGAA	.	91.0	4.0	143.0	0.0	.	368	.	.	Atlas-SNP
ATF7	11016	hgsc.bcm.edu	hg19	12	53911113	53911113	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATF7	NM_006856	exon12	c.A1260G	p.P420P	ACCCGTTGGCTCT	.	89.0	4.0	144.0	0.0	.	51	.	.	Atlas-SNP
DTX3	196403	hgsc.bcm.edu	hg19	12	58001168	58001168	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DTX3	NM_178502	exon5	c.C522T	p.A174A	GAATGCCAAGACA	.	123.0	5.0	189.0	0.0	.	27	.	.	Atlas-SNP
USP15	9958	hgsc.bcm.edu	hg19	12	62790141	62790141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP15	NM_001252078	exon20	c.T2637C	p.A879A	GATTGCTGTTTCC	.	75.0	6.0	124.0	0.0	.	105	.	.	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80266678	80266678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R12A	NM_002480	exon2	c.T278C	p.V93A	TTTTCTACCAGAA	.	74.0	4.0	122.0	0.0	.	76	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88523495	88523495	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,1	CEP290	NM_025114	exon10	c.A828G	p.K276K	GTTTTCTTTTTTT	.	62.0	3.0	154.0	0.0	.	195	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94631455	94631455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNC1	NM_005761	exon10	c.T1996C	p.S666P	ATTAAGTCCATTG	.	55.0	4.0	71.0	0.0	.	135	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99447084	99447084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANKS1B	NM_152788	exon17	c.A2629G	p.R877G	TGGGTCTCATCTG	.	71.0	4.0	93.0	0.0	.	180	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101333217	101333217	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANO4	NM_178826	exon3	c.A180G	p.E60E	ATTGGAAGCCGGG	.	63.0	4.0	110.0	0.0	.	183	.	.	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	hg19	12	102122736	102122736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYCP3	NM_001177949	exon9	c.T680C	p.V227A	TTCCGAACACTTG	.	71.0	4.0	118.0	0.0	.	19	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104157304	104157304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STAB2	NM_017564	exon68	c.A7523G	p.K2508R	TTGGCAAGCAGCA	.	92.0	4.0	156.0	0.0	.	370	.	.	Atlas-SNP
NT5DC3	51559	hgsc.bcm.edu	hg19	12	104208807	104208807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NT5DC3	NM_001031701	exon2	c.T301C	p.F101L	AATCGAAGCCATA	.	98.0	5.0	183.0	0.0	.	113	.	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	hg19	12	109288138	109288138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DAO	NM_001917	exon7	c.A607G	p.M203V	CAGATCATGAAGG	.	44.0	4.0	83.0	0.0	.	58	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120241020	120241020	+	Missense_Mutation	SNP	C	C	G	rs145965687	bycluster;by1000genomes;alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CIT	NM_001206999	exon10	c.G1285C	p.G429R	ATCTACCAAGAAT	.	77.0	53.0	112.0	0.0	.	535	.	C|1.000;T|0.000	Atlas-SNP
CCDC62	84660	hgsc.bcm.edu	hg19	12	123285708	123285708	+	Missense_Mutation	SNP	C	C	T	rs373036488		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCDC62	NM_201435	exon9	c.C1015T	p.P339S	AACCACCCAAAAG	.	81.0	4.0	124.0	0.0	.	119	.	.	Atlas-SNP
DDX55	57696	hgsc.bcm.edu	hg19	12	124104625	124104625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DDX55	NM_020936	exon14	c.A1741G	p.T581A	TTGACAACTGGCA	.	88.0	4.0	149.0	0.0	.	51	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124824953	124824953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NCOR2	NM_006312	exon38	c.C5375T	p.S1792F	GACGAGGACGTGG	.	51.0	4.0	90.0	0.0	.	475	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23909856	23909856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SACS	NM_014363	exon10	c.A8159G	p.D2720G	ATTCTGTCTGATG	.	72.0	4.0	106.0	0.0	.	871	.	.	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	hg19	13	28608538	28608538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FLT3	NM_004119	exon13	c.T1604C	p.F535S	AAAGGGAAGGGGC	.	90.0	4.0	144.0	0.0	.	15525	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	49027248	49027248	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	RB1_ENST00000267163,bladder,carcinoma,0,1	RB1	NM_000321	exon18	c.1814+1G>A	.	AGATATGTAAGCA	.	24.0	2.0	40.0	0.0	.	1068	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60240729	60240729	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	DIAPH3,colon,carcinoma,0,1	DIAPH3	NM_001042517	exon28	c.C3571T	p.R1191X	AAGCTCGTAATCT	.	50.0	2.0	80.0	0.0	.	139	.	.	Atlas-SNP
SLITRK6	84189	hgsc.bcm.edu	hg19	13	86370190	86370190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLITRK6	NM_032229	exon2	c.G454A	p.E152K	TTGGTTCAATCAC	.	72.0	4.0	124.0	0.0	.	150	.	.	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	hg19	13	99038053	99038053	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FARP1	NM_005766	exon8	c.A744T	p.G248G	CACGGGAATTCTA	.	39.0	20.0	25.0	0.0	.	207	.	.	Atlas-SNP
TM9SF2	9375	hgsc.bcm.edu	hg19	13	100172292	100172292	+	Missense_Mutation	SNP	T	T	C	rs376468098	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TM9SF2	NM_004800	exon3	c.T242C	p.F81S	CCAGGTTTGATTT	.	86.0	4.0	75.0	0.0	.	52	.	.	Atlas-SNP
F10	2159	hgsc.bcm.edu	hg19	13	113803258	113803258	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	F10	NM_000504	exon8	c.C894T	p.G298G	GGAGGGCGGTGAG	.	420.0	26.0	361.0	0.0	.	53	.	.	Atlas-SNP
DCUN1D2	55208	hgsc.bcm.edu	hg19	13	114112422	114112422	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCUN1D2	NM_001014283	exon7	c.A702G	p.G234G	CCAAGCTCCTAAA	.	89.0	5.0	79.0	0.0	.	17	.	.	Atlas-SNP
OR11H6	122748	hgsc.bcm.edu	hg19	14	20692756	20692756	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OR11H6	NM_001004480	exon1	c.C888T	p.Y296Y	GGTATACACAGCA	.	97.0	4.0	117.0	0.0	.	60	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20859791	20859791	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEP1	NM_007110	exon13	c.A2064G	p.A688A	CCTGTCTGCATTA	.	72.0	4.0	149.0	0.0	.	224	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23530644	23530644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACIN1	NM_014977	exon17	c.A3461G	p.E1154G	CGCCGCTCCATTT	.	89.0	4.0	136.0	0.0	.	147	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24884365	24884365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.C3410T	p.A1137V	AGGAGGCCTTCCT	.	15.0	12.0	36.0	0.0	.	120	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24885708	24885708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NYNRIN	NM_025081	exon9	c.A4753G	p.S1585G	TGCAGGAGCTGCT	.	55.0	4.0	83.0	0.0	.	120	.	.	Atlas-SNP
STRN3	29966	hgsc.bcm.edu	hg19	14	31425396	31425396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STRN3	NM_001083893	exon2	c.A335G	p.K112R	AAGTCCTTCTTCA	.	93.0	4.0	148.0	0.0	.	117	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31583498	31583498	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HECTD1	NM_015382	exon31	c.A5667G	p.G1889G	CATTTTTCCATTT	.	98.0	4.0	204.0	0.0	.	159	.	.	Atlas-SNP
DTD2	112487	hgsc.bcm.edu	hg19	14	31917645	31917645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_080664	exon3	c.A197G	p.N66S	TTCACATTTAACA	.	74.0	4.0	123.0	0.0	.	.	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45644656	45644656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,1	FANCM	NM_020937	exon14	c.C2699T	p.T900I	AAAGGACATCAGA	.	30.0	2.0	76.0	0.0	.	225	.	.	Atlas-SNP
POLE2	5427	hgsc.bcm.edu	hg19	14	50118040	50118040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	POLE2	NM_001197331	exon16	c.A1267G	p.M423V	TGCACATTTTATT	.	83.0	4.0	159.0	0.0	.	36	.	.	Atlas-SNP
OTX2	5015	hgsc.bcm.edu	hg19	14	57268484	57268484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OTX2	NM_001270525	exon3	c.A863T	p.Q288L	GATGTCTGATCTT	.	78.0	4.0	149.0	0.0	.	47	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64641759	64641759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SYNE2	NM_182914	exon95	c.A17333G	p.E5778G	CTAAAGAGTCTGT	.	59.0	4.0	96.0	0.0	.	577	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68215323	68215323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZFYVE26	NM_015346	exon42	c.T7450C	p.S2484P	AGGCAGAACGCAG	.	68.0	4.0	117.0	0.0	.	223	.	.	Atlas-SNP
DLST	1743	hgsc.bcm.edu	hg19	14	75365074	75365074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DLST	NM_001933	exon11	c.A773G	p.N258S	ACAGTAACATCCA	.	92.0	4.0	140.0	0.0	.	42	.	.	Atlas-SNP
CATSPERB	79820	hgsc.bcm.edu	hg19	14	92102785	92102785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CATSPERB	NM_024764	exon17	c.A1726G	p.K576E	TCACTTTTCCATA	.	123.0	5.0	195.0	0.0	.	114	.	.	Atlas-SNP
CCNK	8812	hgsc.bcm.edu	hg19	14	99968582	99968582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CCNK	NM_001099402	exon7	c.T614C	p.I205T	CAGAGATCATAGC	.	93.0	4.0	152.0	0.0	.	32	.	.	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	hg19	14	103466024	103466024	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDC42BPB	NM_006035	exon5	c.T474C	p.G158G	ATCACCACCCACA	.	98.0	5.0	175.0	0.0	.	123	.	.	Atlas-SNP
EIF5	1983	hgsc.bcm.edu	hg19	14	103803078	103803078	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EIF5	NM_001969	exon5	c.T219C	p.R73R	TGACCGTTACATT	.	80.0	4.0	97.0	0.0	.	40	.	.	Atlas-SNP
PPP1R13B	23368	hgsc.bcm.edu	hg19	14	104206859	104206859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PPP1R13B	NM_015316	exon12	c.T1894C	p.S632P	CCGTGGACAGTGA	.	75.0	5.0	114.0	0.0	.	72	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	26026243	26026243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP10A	NM_024490	exon2	c.T577C	p.C193R	TGTGGCATAGCCC	.	114.0	5.0	167.0	0.0	.	270	.	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	hg19	15	33091107	33091107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FMN1	NM_001103184	exon15	c.A3359G	p.E1120G	TCCTTCTCACCAG	.	78.0	4.0	103.0	0.0	.	174	.	.	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	hg19	15	34646648	34646648	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C15orf55	NM_175741	exon5	c.G993A	p.V331V	CTTAGTGTACATT	.	68.0	4.0	160.0	0.0	.	110	.	.	Atlas-SNP
BUB1B	701	hgsc.bcm.edu	hg19	15	40504778	40504778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BUB1B	NM_001211	exon19	c.T2464C	p.F822L	GATCATTTTTGCA	.	73.0	4.0	109.0	0.0	.	71	.	.	Atlas-SNP
CASC4	113201	hgsc.bcm.edu	hg19	15	44695118	44695118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CASC4	NM_138423	exon9	c.A1106G	p.D369G	CTGTTGATCCGCA	.	77.0	4.0	158.0	0.0	.	34	.	.	Atlas-SNP
USP8	9101	hgsc.bcm.edu	hg19	15	50791193	50791193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP8	NM_001128610	exon20	c.T3265C	p.S1089P	GAAGTTTCTGATA	.	77.0	4.0	167.0	0.0	.	90	.	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51748508	51748508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DMXL2	NM_001174116	exon37	c.A8333G	p.Y2778C	TTACAGTATTGAT	.	99.0	4.0	197.0	0.0	.	262	.	.	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	hg19	15	56207944	56207944	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NEDD4	NM_198400	exon1	c.A1086G	p.R362R	AGTCTGTCTGGGA	.	59.0	4.0	67.0	0.0	.	167	.	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	hg19	15	60741135	60741135	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	NARG2,NS,carcinoma,0,1	NARG2	NM_024611	exon10	c.T2031C	p.P677P	AACAGAAGGCTGT	.	70.0	3.0	163.0	0.0	.	82	.	.	Atlas-SNP
IQCH	64799	hgsc.bcm.edu	hg19	15	67553702	67553702	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IQCH	NM_022784	exon2	c.A144G	p.T48T	TGAAACAGCAATC	.	57.0	4.0	81.0	0.0	.	81	.	.	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	hg19	15	77059425	77059425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SCAPER	NM_020843	exon10	c.T1253C	p.M418T	TCTGCCATGGACT	.	76.0	4.0	155.0	0.0	.	160	.	.	Atlas-SNP
DNAJA4	55466	hgsc.bcm.edu	hg19	15	78572631	78572631	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DNAJA4	NM_018602	exon8	c.T1110C	p.P370P	GCTTCCTCAGCTG	.	60.0	4.0	76.0	0.0	.	63	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81517943	81517943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IL16	NM_001172128	exon2	c.A203G	p.E68G	CATCGGAGGCTGG	.	69.0	4.0	114.0	0.0	.	254	.	.	Atlas-SNP
SLC28A1	9154	hgsc.bcm.edu	hg19	15	85438313	85438313	+	Silent	SNP	C	C	T	rs2277576		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	SLC28A1_ENST00000338602,NS,carcinoma,0,1	SLC28A1	NM_201651	exon6	c.C420T	p.L140L	GTTTCTCAAGCCT	.	63.0	6.0	102.0	2.0	.	118	.	.	Atlas-SNP
FANCI	55215	hgsc.bcm.edu	hg19	15	89804010	89804010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FANCI	NM_001113378	exon4	c.T224C	p.L75S	TCCAGTTGGTGGA	.	93.0	4.0	153.0	0.0	.	129	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99460002	99460002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IGF1R	NM_000875	exon10	c.T2098C	p.C700R	CCTTGCTGCGCCT	.	95.0	4.0	150.0	0.0	.	147	.	.	Atlas-SNP
C1QTNF8	390664	hgsc.bcm.edu	hg19	16	1143730	1143730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C1QTNF8	NM_207419	exon4	c.A530G	p.E177G	TAGGTCTCCTTGT	.	70.0	4.0	66.0	0.0	.	15	.	.	Atlas-SNP
ZNF263	10127	hgsc.bcm.edu	hg19	16	3340153	3340153	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF263	NM_005741	exon6	c.T1647C	p.S549S	CTTCTCTGAGTGT	.	118.0	5.0	119.0	0.0	.	58	.	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	hg19	16	9009382	9009382	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP7	NM_003470	exon9	c.T907C	p.L303L	CGAGCAACTGAAA	.	104.0	5.0	132.0	0.0	.	116	.	.	Atlas-SNP
C16orf88	400506	hgsc.bcm.edu	hg19	16	19725915	19725915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	C16orf88	NM_001012991	exon2	c.T443C	p.L148P	TTTTTGAGCTTCT	.	68.0	4.0	95.0	0.0	.	41	.	.	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	hg19	16	22826066	22826066	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HS3ST2	NM_006043	exon1	c.T135C	p.G45G	CCTGGGTCGGAGC	.	73.0	4.0	54.0	0.0	.	59	.	.	Atlas-SNP
ARHGAP17	55114	hgsc.bcm.edu	hg19	16	24958829	24958829	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP17	NM_001006634	exon14	c.T1215C	p.P405P	CAAGTTAGGGCCT	.	68.0	4.0	64.0	0.0	.	138	.	.	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28124248	28124248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	XPO6	NM_015171	exon16	c.T2128C	p.S710P	GGGCAGAGGCATC	.	88.0	4.0	66.0	0.0	.	177	.	.	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30978231	30978231	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SETD1A	NM_014712	exon9	c.A2532G	p.Q844Q	GCAGCAAGCCAAG	.	80.0	4.0	82.0	0.0	.	143	.	.	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	hg19	16	56913123	56913123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC12A3	NM_001126108	exon10	c.T1319C	p.L440P	ACGGCCTCATCAA	.	79.0	4.0	109.0	0.0	.	99	.	.	Atlas-SNP
CDH16	1014	hgsc.bcm.edu	hg19	16	66946026	66946026	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CDH16	NM_004062	exon13	c.A1566G	p.A522A	TGGAGCTGCCTCA	.	75.0	4.0	96.0	0.0	.	91	.	.	Atlas-SNP
ATP6V0D1	9114	hgsc.bcm.edu	hg19	16	67477048	67477048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ATP6V0D1	NM_004691	exon4	c.A515G	p.D172G	TCAAGGTCCTGCT	.	145.0	6.0	187.0	0.0	.	25	.	.	Atlas-SNP
CENPT	80152	hgsc.bcm.edu	hg19	16	67864301	67864301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CENPT	NM_025082	exon11	c.A854G	p.Q285R	TTCTTCTGCAGCC	.	94.0	6.0	119.0	0.0	.	26	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67916724	67916724	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EDC4	NM_014329	exon26	c.T3585C	p.S1195S	CGGCAGTGTTCGT	.	76.0	4.0	89.0	0.0	.	101	.	.	Atlas-SNP
PHLPP2	23035	hgsc.bcm.edu	hg19	16	71683278	71683278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PHLPP2	NM_015020	exon18	c.A3487G	p.S1163G	CCTTGCTGCCATT	.	69.0	4.0	72.0	0.0	.	96	.	.	Atlas-SNP
CHST6	4166	hgsc.bcm.edu	hg19	16	75513087	75513087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CHST6	NM_021615	exon3	c.A640G	p.T214A	TGGCTGTCTGCTC	.	75.0	4.0	8.0	0.0	.	57	.	.	Atlas-SNP
CHST5	23563	hgsc.bcm.edu	hg19	16	75563627	75563627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	CHST5,right_upper_lobe,carcinoma,0,1	CHST5	NM_024533	exon3	c.T656C	p.I219T	TGCACGATGCGCA	.	27.0	2.0	23.0	0.0	.	47	.	.	Atlas-SNP
TAF1C	9013	hgsc.bcm.edu	hg19	16	84214979	84214979	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	TAF1C,bladder,carcinoma,0,1	TAF1C	NM_005679	exon10	c.G1197T	p.V399V	GGTCAGCACCCGA	.	160.0	8.0	151.0	1.0	.	60	.	.	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	2203182	2203182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMG6	NM_017575	exon2	c.A865G	p.R289G	GTGGCCTCTCCTT	.	90.0	4.0	135.0	0.0	.	97	.	.	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	hg19	17	4575334	4575334	+	Silent	SNP	T	T	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PELP1	NM_014389	exon16	c.A2952C	p.P984P	CAGAGCTGGAGGC	.	19.0	5.0	48.0	0.0	.	102	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7579349	7579349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	TP53_ENST00000413465,NS,carcinoma,0,16	TP53	NM_000546	exon4	c.T338G	p.F113C	TGCAAGAAGCCCA	.	137.0	84.0	200.0	0.0	.	33396	.	.	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8131865	8131865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CTC1	NM_025099	exon22	c.T3470C	p.L1157P	AAAGAAAGCACAA	.	95.0	4.0	122.0	0.0	.	75	.	.	Atlas-SNP
GAS7	8522	hgsc.bcm.edu	hg19	17	9843452	9843452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GAS7	NM_201433	exon8	c.A797G	p.Q266R	TCCTCCTGTGAAG	.	85.0	4.0	130.0	0.0	.	113	.	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10532990	10532990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MYH3	NM_002470	exon40	c.C5720T	p.A1907V	TCCTCGGCCTCCT	.	79.0	4.0	114.0	0.0	.	227	.	.	Atlas-SNP
ZNF287	57336	hgsc.bcm.edu	hg19	17	16456389	16456389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF287	NM_020653	exon6	c.T1067C	p.I356T	TGTACAATACCAT	.	86.0	4.0	102.0	0.0	.	60	.	.	Atlas-SNP
TRIM16L	147166	hgsc.bcm.edu	hg19	17	18638692	18638692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TRIM16L	NM_001037330	exon5	c.G966T	p.K322N	TTCCAAGAAGGAA	.	182.0	74.0	161.0	0.0	.	15	.	.	Atlas-SNP
WSB1	26118	hgsc.bcm.edu	hg19	17	25630657	25630657	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WSB1	NM_015626	exon3	c.T474A	p.Y158X	TGTATATACAGGT	.	90.0	34.0	115.0	0.0	.	29	.	.	Atlas-SNP
MYO1D	4642	hgsc.bcm.edu	hg19	17	31087321	31087321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MYO1D	NM_015194	exon10	c.T1283C	p.I428T	CAGGGGATCCCTT	.	116.0	5.0	95.0	0.0	.	93	.	.	Atlas-SNP
KRT24	192666	hgsc.bcm.edu	hg19	17	38858135	38858135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,1	KRT24	NM_019016	exon2	c.T666G	p.N222K	TCTGGCATTGTCA	.	341.0	14.0	291.0	0.0	.	60	.	.	Atlas-SNP
KRTAP29-1	100533177	hgsc.bcm.edu	hg19	17	39458577	39458577	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KRTAP29-1	NM_001257309	exon1	c.G527C	p.C176S	GCTGTACAGATGG	.	43.0	5.0	37.0	0.0	.	2	.	.	Atlas-SNP
GHDC	84514	hgsc.bcm.edu	hg19	17	40343211	40343211	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GHDC	NM_001142623	exon6	c.C907G	p.L303V	GCTGTAGGTTTAG	.	72.0	34.0	71.0	0.0	.	63	.	.	Atlas-SNP
HOXB6	3216	hgsc.bcm.edu	hg19	17	46673963	46673963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	HOXB6,NS,carcinoma,0,1	HOXB6	NM_018952	exon4	c.A487G	p.K163E	ACTCCTTCTCCAG	.	85.0	4.0	73.0	0.0	.	13	.	.	Atlas-SNP
SEPT4	5414	hgsc.bcm.edu	hg19	17	56603141	56603141	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SEPT4	NM_001256782	exon5	c.A498G	p.G166G	AGACTCTCCTGAG	.	58.0	4.0	80.0	0.0	.	48	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	hg19	17	56638968	56638968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TEX14	NM_001201457	exon30	c.A4208G	p.H1403R	GTAGAGTGAGCTC	.	109.0	5.0	114.0	0.0	.	343	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65337110	65337110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PSMD12	NM_002816	exon11	c.A1220G	p.D407G	AATCTGTCTACTT	.	94.0	4.0	89.0	0.0	.	32	.	.	Atlas-SNP
NUP85	79902	hgsc.bcm.edu	hg19	17	73214301	73214301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NUP85	NM_024844	exon7	c.T497C	p.L166P	TCCATCTCCTTGA	.	110.0	6.0	115.0	0.0	.	44	.	.	Atlas-SNP
RNF157	114804	hgsc.bcm.edu	hg19	17	74169787	74169787	+	Missense_Mutation	SNP	C	C	T	rs144334591		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RNF157	NM_052916	exon3	c.G292A	p.V98I	ACTTGACGAGCCT	.	131.0	62.0	152.0	0.0	.	66	.	C|1.000;T|0.000	Atlas-SNP
ST6GALNAC2	10610	hgsc.bcm.edu	hg19	17	74562230	74562230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ST6GALNAC2	NM_006456	exon9	c.A1081G	p.R361G	GGTCCCTCCACAG	.	86.0	4.0	94.0	0.0	.	29	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8376068	8376068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PTPRM	NM_001105244	exon25	c.A3196G	p.I1066V	CGAGAGATCAGAC	.	67.0	4.0	68.0	0.0	.	185	.	.	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28972131	28972131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DSG4	NM_001134453	exon8	c.T833C	p.I278T	CCAGTATTGAAGA	.	91.0	4.0	91.0	0.0	.	343	.	.	Atlas-SNP
BCL2	596	hgsc.bcm.edu	hg19	18	60795978	60795978	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	BCL2	NM_000633	exon3	c.A600G	p.E200E	GTACAGTTCCACA	.	119.0	42.0	132.0	0.0	.	272	.	.	Atlas-SNP
WDR18	57418	hgsc.bcm.edu	hg19	19	985884	985884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	WDR18	NM_024100	exon2	c.T230C	p.I77T	AGAAGATCATGTG	.	96.0	4.0	98.0	0.0	.	20	.	.	Atlas-SNP
DAPK3	1613	hgsc.bcm.edu	hg19	19	3959236	3959236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DAPK3	NM_001348	exon8	c.A1228G	p.K410E	GGCGCTTGAGGCC	.	64.0	4.0	13.0	0.0	.	56	.	.	Atlas-SNP
GPR108	56927	hgsc.bcm.edu	hg19	19	6731272	6731272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPR108	NM_001080452	exon16	c.A1372G	p.T458A	TGCGGGTGAAGTA	.	134.0	6.0	95.0	0.0	.	35	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9020072	9020072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	MUC16_ENST00000397910,NS,carcinoma,0,1	MUC16	NM_024690	exon21	c.C37423T	p.R12475W	ACAGCCGCTCTCT	.	247.0	90.0	220.0	0.0	.	4315	.	.	Atlas-SNP
ZNF823	55552	hgsc.bcm.edu	hg19	19	11832694	11832694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF823	NM_001080493	exon4	c.A1655G	p.E552G	GGTTTCTCTCCAG	.	95.0	4.0	98.0	0.0	.	104	.	.	Atlas-SNP
ZNF700	90592	hgsc.bcm.edu	hg19	19	12059745	12059745	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF700	NM_001271848	exon4	c.A915G	p.G305G	CATGGGAGAGAAG	.	94.0	4.0	63.0	0.0	.	81	.	.	Atlas-SNP
RAD23A	5886	hgsc.bcm.edu	hg19	19	13059162	13059162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RAD23A	NM_005053	exon3	c.T406C	p.S136P	CCAGAGTCTGTGT	.	76.0	4.0	79.0	0.0	.	29	.	.	Atlas-SNP
DCAF15	90379	hgsc.bcm.edu	hg19	19	14070706	14070706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	DCAF15	NM_138353	exon9	c.A1439G	p.E480G	TTCTGGAGGTGGG	.	104.0	6.0	113.0	0.0	.	30	.	.	Atlas-SNP
AKAP8	10270	hgsc.bcm.edu	hg19	19	15484733	15484733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP8	NM_005858	exon4	c.T235C	p.S79P	CGTAAGAGGCCAT	.	97.0	5.0	104.0	0.0	.	68	.	.	Atlas-SNP
EPS15L1	58513	hgsc.bcm.edu	hg19	19	16513229	16513229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	EPS15L1	NM_021235	exon16	c.A1694G	p.D565G	ACCTGGTCATACT	.	100.0	4.0	84.0	0.0	.	81	.	.	Atlas-SNP
KCNN1	3780	hgsc.bcm.edu	hg19	19	18108964	18108964	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KCNN1	NM_002248	exon11	c.C1381T	p.Q461X	CAGACCCAGACCG	.	59.0	4.0	73.0	0.0	.	74	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299779	21299779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF714	NM_182515	exon5	c.A309T	p.E103D	TTATGAACTAAAC	.	106.0	7.0	112.0	0.0	.	121	.	.	Atlas-SNP
GRAMD1A	57655	hgsc.bcm.edu	hg19	19	35504479	35504479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GRAMD1A	NM_020895	exon9	c.A754G	p.S252G	GCCCTGAGCGACA	.	90.0	4.0	91.0	0.0	.	39	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36258938	36258938	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,11	C19orf55	NM_001039887	exon9	c.1190+1G>A	.	TGCCCAGGGCCGC	.	19.0	4.0	10.0	0.0	.	39	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36351240	36351240	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIRREL2	NM_199180	exon6	c.C715T	p.Q239X	ACTGTGCAGGAGG	.	63.0	4.0	47.0	0.0	.	170	.	.	Atlas-SNP
ZNF567	163081	hgsc.bcm.edu	hg19	19	37211090	37211090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF567	NM_152603	exon4	c.G1371T	p.M457I	TAGAATGAAGTCA	.	108.0	32.0	92.0	0.0	.	61	.	.	Atlas-SNP
ZNF793	390927	hgsc.bcm.edu	hg19	19	38023265	38023265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF793	NM_001013659	exon6	c.T23C	p.V8A	TACCTGTGTCATT	.	88.0	4.0	82.0	0.0	.	50	.	.	Atlas-SNP
PSG4	5672	hgsc.bcm.edu	hg19	19	43699239	43699239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	PSG4_ENST00000405312,NS,carcinoma,0,1	PSG4	NM_002780	exon4	c.C896G	p.T299S	GTGACATTGGGTA	.	67.0	6.0	69.0	1.0	.	129	.	.	Atlas-SNP
ZNF576	79177	hgsc.bcm.edu	hg19	19	44103100	44103100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF576	NM_001145347	exon3	c.G203A	p.G68E	TGCAGGGGGTCCT	.	173.0	80.0	133.0	0.0	.	11	.	.	Atlas-SNP
ZNF226	7769	hgsc.bcm.edu	hg19	19	44679880	44679880	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001032372	exon6	c.T465C	p.G155G	AGATGGTCCCAAT	.	81.0	4.0	104.0	0.0	.	.	.	.	Atlas-SNP
PLEKHA4	57664	hgsc.bcm.edu	hg19	19	49357343	49357343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLEKHA4	NM_020904	exon11	c.C1097T	p.T366M	AGCAGCGTCTGGA	.	121.0	59.0	106.0	0.0	.	70	.	.	Atlas-SNP
DHDH	27294	hgsc.bcm.edu	hg19	19	49442857	49442857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	DHDH,colon,carcinoma,0,1	DHDH	NM_014475	exon4	c.C518G	p.A173G	GGGGGGCCCTGCT	.	63.0	3.0	62.0	0.0	.	35	.	.	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	hg19	19	53208850	53208850	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF611	NM_030972	exon7	c.A1458G	p.E486E	CCCACATTCATTA	.	103.0	5.0	103.0	0.0	.	72	.	.	Atlas-SNP
ZNF816	125893	hgsc.bcm.edu	hg19	19	53454471	53454471	+	Missense_Mutation	SNP	G	G	C	rs79566976		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF816	NM_001202457	exon4	c.C557G	p.A186G	GAGGAAGCACCGA	.	81.0	6.0	91.0	0.0	.	73	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53643997	53643997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF347	NM_001172675	exon5	c.A2087G	p.K696R	GCAAGCTTTGATG	.	122.0	6.0	88.0	0.0	.	87	.	.	Atlas-SNP
ZNF805	390980	hgsc.bcm.edu	hg19	19	57765823	57765823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF805	NM_001023563	exon4	c.A1636G	p.K546E	TGTGGAAAGGCCT	.	85.0	4.0	91.0	0.0	.	30	.	.	Atlas-SNP
SMOX	54498	hgsc.bcm.edu	hg19	20	4162577	4162577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SMOX	NM_175839	exon4	c.A563G	p.E188G	ACCCAGAGGCTAC	.	92.0	6.0	104.0	0.0	.	119	.	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	hg19	20	16360047	16360047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	KIF16B	NM_001199865	exon19	c.A2600G	p.E867G	TCATGTTCACATT	.	82.0	4.0	74.0	0.0	.	305	.	.	Atlas-SNP
OVOL2	58495	hgsc.bcm.edu	hg19	20	18022238	18022238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OVOL2	NM_021220	exon3	c.T451C	p.F151L	CGCAGAAGGTGCA	.	123.0	5.0	114.0	0.0	.	18	.	.	Atlas-SNP
SLC24A3	57419	hgsc.bcm.edu	hg19	20	19698204	19698204	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLC24A3	NM_020689	exon16	c.C1752T	p.S584S	CTACTCCGTAGGC	.	241.0	103.0	235.0	0.0	.	92	.	.	Atlas-SNP
NECAB3	63941	hgsc.bcm.edu	hg19	20	32246573	32246573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NECAB3	NM_031232	exon9	c.T947C	p.L316P	CAGCGCAGGGCTC	.	149.0	6.0	158.0	0.0	.	27	.	.	Atlas-SNP
RPN2	6185	hgsc.bcm.edu	hg19	20	35865012	35865012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RPN2	NM_002951	exon16	c.A1783G	p.T595A	TACTGGACTCAGC	.	111.0	5.0	126.0	0.0	.	45	.	.	Atlas-SNP
FAM83D	81610	hgsc.bcm.edu	hg19	20	37576564	37576564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM83D	NM_030919	exon3	c.T787C	p.S263P	GCAAGGTCAGGAA	.	88.0	4.0	77.0	0.0	.	60	.	.	Atlas-SNP
OCSTAMP	128506	hgsc.bcm.edu	hg19	20	45174327	45174327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OCSTAMP	NM_080721	exon2	c.T686C	p.V229A	CCTGTGACCACTC	.	87.0	5.0	86.0	0.0	.	34	.	.	Atlas-SNP
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51872639	51872639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	TSHZ2	NM_173485	exon2	c.A2642G	p.E881G	CACAAGAGCGTAT	.	86.0	4.0	104.0	0.0	.	209	.	.	Atlas-SNP
LSM14B	149986	hgsc.bcm.edu	hg19	20	60706422	60706422	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LSM14B	NM_144703	exon7	c.T846C	p.A282A	CAAGGCTGAGAAG	.	85.0	4.0	99.0	0.0	.	62	.	.	Atlas-SNP
GART	2618	hgsc.bcm.edu	hg19	21	34882122	34882122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.,5	GART	NM_001136005	exon18	c.A2420G	p.K807R	CTGGCCTTTTTTT	.	78.0	4.0	58.0	0.0	.	81	.	.	Atlas-SNP
FAM3B	54097	hgsc.bcm.edu	hg19	21	42720630	42720630	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM3B	NM_058186	exon7	c.T597C	p.P199P	ACTCCCTTCCGAA	.	96.0	4.0	150.0	0.0	.	22	.	.	Atlas-SNP
PKNOX1	5316	hgsc.bcm.edu	hg19	21	44441414	44441414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PKNOX1	NM_004571	exon8	c.T722C	p.L241P	AAAAGCTTCAGTT	.	100.0	4.0	100.0	0.0	.	40	.	.	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	hg19	22	37902375	37902375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	CARD10	NM_014550	exon7	c.G1207T	p.D403Y	TCCGGTCACGGCT	.	230.0	68.0	207.0	0.0	.	55	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38119756	38119756	+	Missense_Mutation	SNP	A	A	G	rs77530465	alternate_allele	TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	TRIOBP_ENST00000344404,NS,carcinoma,0,1	TRIOBP	NM_001039141	exon7	c.A1193G	p.Q398R	CCACTCAACGAGA	.	13.0	8.0	1.0	0.0	.	262	.	.	Atlas-SNP
PRR5	55615	hgsc.bcm.edu	hg19	22	45110469	45110469	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PRR5	NM_001017528	exon3	c.108-2A>G	.	GCCCCCAGCATCC	.	107.0	5.0	82.0	0.0	.	75	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50720335	50720335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNB2	NM_012401	exon20	c.A3293G	p.E1098G	AAGTTCTCAAAGG	.	39.0	4.0	38.0	0.0	.	172	.	.	Atlas-SNP
ACOT9	23597	hgsc.bcm.edu	hg19	X	23726023	23726023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ACOT9	NM_001037171	exon10	c.A701G	p.E234G	TCTTCCTCTGGGC	.	79.0	4.0	80.0	0.0	.	33	.	.	Atlas-SNP
MAGEB10	139422	hgsc.bcm.edu	hg19	X	27839847	27839847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MAGEB10	NM_182506	exon3	c.A424G	p.T142A	AATGTAACCCAAA	.	84.0	4.0	113.0	0.0	.	107	.	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41088999	41088999	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	USP9X	NM_001039591	exon43	c.A7398G	p.T2466T	GATGACACTTGCA	.	108.0	5.0	79.0	0.0	.	385	.	.	Atlas-SNP
ZNF41	7592	hgsc.bcm.edu	hg19	X	47307022	47307022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF41	NM_007130	exon5	c.A2147G	p.E716G	TGTCTTTCTCCAG	.	78.0	4.0	94.0	0.0	.	71	.	.	Atlas-SNP
ZNF630	57232	hgsc.bcm.edu	hg19	X	47919903	47919903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ZNF630	NM_001037735	exon4	c.A164G	p.D55G	ATTACATCTGGTT	.	27.0	21.0	22.0	0.0	.	71	.	.	Atlas-SNP
AKAP4	8852	hgsc.bcm.edu	hg19	X	49958534	49958534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	AKAP4	NM_003886	exon5	c.A830G	p.E277G	ACAGCTTCATAGG	.	65.0	4.0	46.0	0.0	.	131	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53565344	53565344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	HUWE1	NM_031407	exon77	c.G11950A	p.V3984I	CCAGGACAGCAAA	.	85.0	4.0	92.0	0.0	.	724	.	.	Atlas-SNP
FAM120C	54954	hgsc.bcm.edu	hg19	X	54162988	54162988	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FAM120C	NM_017848	exon5	c.A1194G	p.K398K	AACTGCTTTCTTG	.	75.0	4.0	76.0	0.0	.	89	.	.	Atlas-SNP
LAS1L	81887	hgsc.bcm.edu	hg19	X	64754435	64754435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	LAS1L	NM_031206	exon1	c.T161C	p.V54A	ACCGTCACCTGGT	.	74.0	4.0	73.0	0.0	.	72	.	.	Atlas-SNP
YIPF6	286451	hgsc.bcm.edu	hg19	X	67731743	67731743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	YIPF6	NM_173834	exon2	c.A110G	p.E37G	AAGGAGAAATCAC	.	50.0	4.0	47.0	0.0	.	27	.	.	Atlas-SNP
STARD8	9754	hgsc.bcm.edu	hg19	X	67937131	67937131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	STARD8	NM_001142503	exon6	c.T375C	p.S125S	CTGGTCTCCTATG	.	78.0	4.0	96.0	0.0	.	282	.	.	Atlas-SNP
MED12	9968	hgsc.bcm.edu	hg19	X	70357194	70357194	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	MED12	NM_005120	exon39	c.T5709C	p.P1903P	GCAACCTGCGGTG	.	86.0	4.0	83.0	0.0	.	984	.	.	Atlas-SNP
FLJ44635	0	hgsc.bcm.edu	hg19	X	71379912	71379912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	FLJ44635	NM_207422	exon2	c.T233C	p.V78A	ATAGTGTCATGAA	.	99.0	4.0	88.0	0.0	.	13	.	.	Atlas-SNP
GPRASP1	9737	hgsc.bcm.edu	hg19	X	101909698	101909698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.G857T	p.R286M	GGTTTAGGTCTAA	.	80.0	66.0	76.0	0.0	.	140	.	.	Atlas-SNP
GPRASP1	9737	hgsc.bcm.edu	hg19	X	101912553	101912553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	GPRASP1	NM_001099411	exon3	c.T3712C	p.C1238R	TACATATGTAAAG	.	76.0	4.0	57.0	0.0	.	140	.	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	hg19	X	104478544	104478544	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	IL1RAPL2	NM_017416	exon4	c.T399C	p.V133V	GACTGTTGCAGAG	.	66.0	4.0	64.0	0.0	.	105	.	.	Atlas-SNP
SOWAHD	347454	hgsc.bcm.edu	hg19	X	118893082	118893082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001105576	exon1	c.T452C	p.V151A	ACTCGGTTCTGCA	.	54.0	4.0	26.0	0.0	.	.	.	.	Atlas-SNP
NKAP	79576	hgsc.bcm.edu	hg19	X	119068493	119068493	+	Missense_Mutation	SNP	T	T	C	rs199876887		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NKAP	NM_024528	exon5	c.A701G	p.K234R	TTGGCTTTCTTTG	.	97.0	4.0	96.0	0.0	.	53	.	.	Atlas-SNP
XIAP	331	hgsc.bcm.edu	hg19	X	123020184	123020184	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	XIAP	NM_001204401	exon2	c.T672C	p.F224F	ACACTTTCCTAAT	.	90.0	4.0	60.0	0.0	.	56	.	.	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	hg19	X	128695175	128695175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	OCRL	NM_000276	exon10	c.A844G	p.S282G	GACTTGAGCACAG	.	112.0	5.0	111.0	0.0	.	117	.	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	hg19	X	130220617	130220617	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARHGAP36	NM_144967	exon11	c.T1464C	p.A488A	CCTTGCTCAAAGC	.	78.0	4.0	61.0	0.0	.	171	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144905987	144905987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	SLITRK2	NM_001144005	exon5	c.G2044A	p.G682S	ACAGACGGCCATG	.	51.0	43.0	57.0	0.0	.	221	.	.	Atlas-SNP
PASD1	139135	hgsc.bcm.edu	hg19	X	150832684	150832684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PASD1	NM_173493	exon11	c.A935G	p.D312G	AGGTGGACTCAGT	.	100.0	4.0	131.0	0.0	.	286	.	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	hg19	X	153040831	153040831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	PLXNB3	NM_001163257	exon26	c.A4376G	p.H1459R	ACGTGCACAGGAA	.	88.0	4.0	43.0	0.0	.	208	.	.	Atlas-SNP
SMIM9	100132963	hgsc.bcm.edu	hg19	X	154057846	154057846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	.	NM_001162936	exon4	c.T236C	p.L79P	GAGGTGAGAAGAA	.	170.0	9.0	74.0	0.0	.	.	.	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	hg19	X	154194405	154194405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	F8	NM_000132	exon9	c.G1283A	p.S428N	TATTGACTTTTAT	.	91.0	4.0	50.0	0.0	.	646	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89341222	89341227	+	Frame_Shift_Del	DEL	CTGGCT	CTGGCT	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	CTGGCT	CTGGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ANKRD11	NM_013275	exon11	c.7709_7713del	p.2570_2571del	.	.	69.0	18.0	90.0	0.0	.	195	.	.	Atlas-Indel,Pindel
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120458918	120458919	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	NOTCH2	NM_024408	exon34	c.6427_6428insTT	p.E2143fs	.	.	216.0	49.0	217.0	0.0	.	348	.	.	Atlas-Indel,Pindel
ARID2	196528	hgsc.bcm.edu	hg19	12	46246364	46246376	+	Frame_Shift_Del	DEL	TCCCGACTCAGGA	TCCCGACTCAGGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	TCCCGACTCAGGA	TCCCGACTCAGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	ARID2	NM_152641	exon15	c.4457_4469del	p.1486_1490del	.	.	81.0	23.0	210.0	0.0	.	311	.	.	Atlas-Indel,Pindel
RASA1	5921	hgsc.bcm.edu	hg19	5	86665656	86665668	+	Frame_Shift_Del	DEL	AGCACTTTAGTGA	AGCACTTTAGTGA	-	novel		TCGA-CC-A3MA-01A-11D-A20W-10	TCGA-CC-A3MA-10A-01D-A20W-10	AGCACTTTAGTGA	AGCACTTTAGTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f89d0a39-0177-499b-bb65-3cb17b108023	60141338-5497-4228-a24f-74b33d3d49af	.	RASA1	NM_002890	exon12	c.1636_1648del	p.546_550del	.	.	158.0	20.0	0.0	0.0	.	213	.	.	Pindel
