Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SLC2A7	155184	hgsc.bcm.edu	hg19	1	9074919	9074919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC2A7	NM_207420	exon7	c.A724G	p.R242G	TCAGCCTCCTCAG	.	37.0	4.0	17.0	0.0	.	56	.	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	hg19	1	12403094	12403094	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS13D	NM_015378	exon42	c.A8871G	p.G2957G	AAGAGGAAAGTTA	.	62.0	4.0	61.0	0.0	.	316	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16254901	16254901	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPEN	NM_015001	exon11	c.T2166C	p.I722I	GCCGATTGAACGA	.	95.0	4.0	144.0	0.0	.	374	.	.	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21176020	21176020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EIF4G3	NM_001198801	exon27	c.A3716G	p.K1239R	TCTGGTTTTGCTA	.	84.0	4.0	151.0	0.0	.	300	.	.	Atlas-SNP
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21221985	21221985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EIF4G3	NM_001198802	exon15	c.A1859G	p.K620R	GTAGGCTTCCAGG	.	67.0	4.0	86.0	0.0	.	300	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39751339	39751339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MACF1	NM_012090	exon15	c.C1432A	p.Q478K	TACATTCAGGAGT	.	194.0	153.0	257.0	0.0	.	909	.	.	Atlas-SNP
TMCO2	127391	hgsc.bcm.edu	hg19	1	40713792	40713792	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMCO2	NM_001008740	exon1	c.C127T	p.L43L	TTGGGACTATTAG	.	77.0	4.0	104.0	0.0	.	23	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43890875	43890875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SZT2	NM_015284	exon18	c.A2642G	p.D881G	CCAAAGACAGGTG	.	77.0	5.0	125.0	0.0	.	383	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	62941000	62941000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DOCK7	NM_001271999	exon46	c.T5951C	p.V1984A	ATAGCAACTTCAA	.	134.0	6.0	199.0	0.0	.	184	.	.	Atlas-SNP
ROR1	4919	hgsc.bcm.edu	hg19	1	64605903	64605903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ROR1	NM_001083592	exon6	c.T722C	p.V241A	CATCCGTCCCAAA	.	116.0	5.0	162.0	0.0	.	113	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75078418	75078418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C1orf173	NM_001002912	exon9	c.T1076C	p.V359A	CTGTTCACCTGCA	.	61.0	5.0	68.0	0.0	.	380	.	.	Atlas-SNP
TYW3	127253	hgsc.bcm.edu	hg19	1	75199081	75199081	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TYW3	NM_001162916	exon1	c.C153T	p.G51G	CGCTGGCCGCATC	.	43.0	5.0	62.0	0.0	.	36	.	.	Atlas-SNP
CDC7	8317	hgsc.bcm.edu	hg19	1	91978625	91978625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G583A	p.V195I	GCCTTGGTAGACT	.	73.0	4.0	166.0	0.0	.	74	.	.	Atlas-SNP
CDC7	8317	hgsc.bcm.edu	hg19	1	91978829	91978829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G787T	p.A263S	ACAAATGCACAAA	.	125.0	20.0	192.0	0.0	.	74	.	.	Atlas-SNP
LPPR4	0	hgsc.bcm.edu	hg19	1	99771896	99771896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	LPPR4,NS,carcinoma,0,1	LPPR4	NM_014839	exon7	c.A1622G	p.Q541R	AGACTCAGGAAAA	.	36.0	2.0	56.0	0.0	.	143	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103481281	103481281	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	COL11A1	NM_080629	exon12	c.T1467C	p.P489P	TAAGCCAGGACGT	.	97.0	4.0	163.0	0.0	.	972	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108292166	108292166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VAV3	NM_006113	exon14	c.A1310T	p.D437V	TAGTTATCACCTT	.	57.0	4.0	108.0	0.0	.	176	.	.	Atlas-SNP
HENMT1	113802	hgsc.bcm.edu	hg19	1	109191529	109191529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HENMT1	NM_144584	exon8	c.A841G	p.S281G	TTAAGCTTTCCAC	.	63.0	4.0	97.0	0.0	.	38	.	.	Atlas-SNP
AMPD2	271	hgsc.bcm.edu	hg19	1	110173318	110173318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AMPD2	NM_004037	exon17	c.A2333G	p.E778G	TGATGGAGGAGTA	.	68.0	4.0	94.0	0.0	.	75	.	.	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114367766	114367766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	PTPN22,NS,carcinoma,0,1	PTPN22	NM_015967	exon19	c.A2279G	p.K760R	TTACTCTTTTTCA	.	53.0	3.0	132.0	0.0	.	90	.	.	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120458101	120458101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NOTCH2	NM_024408	exon34	c.T7244C	p.L2415P	GGTGTCAGGTAGG	.	108.0	5.0	150.0	0.0	.	348	.	.	Atlas-SNP
SETDB1	9869	hgsc.bcm.edu	hg19	1	150933423	150933423	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETDB1	NM_012432	exon16	c.C2885G	p.S962X	CTCCCTCAATCCC	.	203.0	14.0	140.0	0.0	.	204	.	.	Atlas-SNP
LMNA	4000	hgsc.bcm.edu	hg19	1	156108485	156108485	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LMNA	NM_170707	exon11	c.C1905T	p.G635G	GGGTGGCAGCTTC	.	242.0	50.0	192.0	0.0	.	31	.	.	Atlas-SNP
CD1D	912	hgsc.bcm.edu	hg19	1	158151417	158151417	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CD1D	NM_001766	exon3	c.C234G	p.D78E	CAGCGACCAGCAG	.	54.0	5.0	50.0	0.0	.	60	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158646052	158646052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTA1	NM_003126	exon8	c.A991G	p.T331A	AAAGTGTCAGCTT	.	148.0	6.0	128.0	0.0	.	720	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669522	158669522	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR6K2	NM_001005279	exon1	c.T921C	p.G307G	AGCTTGACCTATG	.	94.0	4.0	104.0	0.0	.	104	.	.	Atlas-SNP
ITLN2	142683	hgsc.bcm.edu	hg19	1	160922449	160922449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ITLN2	NM_080878	exon3	c.A154G	p.S52G	TGCAGCTTCTAGG	.	92.0	4.0	80.0	0.0	.	35	.	.	Atlas-SNP
FMO1	2326	hgsc.bcm.edu	hg19	1	171236701	171236701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FMO1	NM_002021	exon3	c.G152A	p.R51K	AAGGCAGAGCCAG	.	191.0	46.0	124.0	0.0	.	79	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175067580	175067580	+	Silent	SNP	T	T	G	rs61747978	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TNN	NM_022093	exon9	c.T1968G	p.S656S	CACCTCTGCTGGT	.	656.0	58.0	277.0	0.0	.	297	.	T|0.981;C|0.019	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177247856	177247856	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM5B	NM_021165	exon7	c.A1170T	p.L390L	GATCCTACGCCGG	.	116.0	49.0	117.0	0.0	.	191	.	.	Atlas-SNP
SEC16B	89866	hgsc.bcm.edu	hg19	1	177901667	177901667	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SEC16B	NM_033127	exon24	c.A2970G	p.G990G	AGCTGCTCCCCCG	.	143.0	6.0	130.0	0.0	.	92	.	.	Atlas-SNP
QSOX1	5768	hgsc.bcm.edu	hg19	1	180163522	180163522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	QSOX1	NM_002826	exon11	c.T1463C	p.L488P	CTCGCCTTGCAGG	.	98.0	5.0	130.0	0.0	.	79	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186340129	186340129	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TPR	NM_003292	exon3	c.T303C	p.I101I	CTGAGCAATTTCA	.	84.0	4.0	102.0	0.0	.	441	.	.	Atlas-SNP
C1orf27	54953	hgsc.bcm.edu	hg19	1	186375351	186375351	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C1orf27	NM_017847	exon12	c.T1137C	p.D379D	GTTGGATCACACA	.	73.0	4.0	79.0	0.0	.	41	.	.	Atlas-SNP
NR5A2	2494	hgsc.bcm.edu	hg19	1	199997033	199997033	+	Missense_Mutation	SNP	C	C	T	rs142187332		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NR5A2	NM_003822	exon1	c.A58T	p.M20L	CTTACACCTATTG	.	71.0	4.0	56.0	0.0	.	83	.	C|1.000;T|0.000	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207679429	207679429	+	Splice_Site	SNP	G	G	A	rs199647026		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CR1	NM_000573	exon2	c.301+1G>A	.	GCAGACGTAAGTA	.	117.0	30.0	139.0	0.0	.	354	.	.	Atlas-SNP
RCOR3	55758	hgsc.bcm.edu	hg19	1	211486825	211486825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RCOR3	NM_001136224	exon11	c.T1135C	p.S379P	ATCCACTCCAACA	.	127.0	6.0	122.0	0.0	.	51	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216373462	216373462	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USH2A	NM_007123	exon17	c.T3318C	p.S1106S	TTGAATACCTGAA	.	17.0	10.0	41.0	0.0	.	1168	.	.	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	hg19	1	226030103	226030103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPHX1	NM_001136018	exon7	c.C968A	p.A323D	TGGCTGCCTATAT	.	111.0	53.0	85.0	0.0	.	57	.	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235945311	235945311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	LYST,NS,carcinoma,0,1	LYST	NM_000081	exon15	c.A4939G	p.M1647V	CAATCATGCAAAA	.	100.0	4.0	90.0	0.0	.	370	.	.	Atlas-SNP
GPR137B	7107	hgsc.bcm.edu	hg19	1	236306000	236306000	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	GPR137B_ENST00000366591,NS,carcinoma,0,2	GPR137B	NM_003272	exon1	c.C78T	p.N26N	CCGCAACGACTCG	.	27.0	2.0	36.0	0.0	.	57	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237540721	237540721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RYR2	NM_001035	exon8	c.T562C	p.S188P	GTGTCCTCTGAAA	.	73.0	4.0	89.0	0.0	.	1273	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	hg19	1	240072218	240072218	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHRM3	NM_000740	exon5	c.G1467A	p.A489A	GAAAGCGGCCCAG	.	147.0	36.0	148.0	0.0	.	118	.	.	Atlas-SNP
COLEC11	78989	hgsc.bcm.edu	hg19	2	3691494	3691494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	COLEC11	NM_001255985	exon8	c.T644C	p.V215A	CCCGTGTCTTCAT	.	79.0	4.0	76.0	0.0	.	93	.	.	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9533657	9533657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASAP2	NM_003887	exon24	c.C2565A	p.S855R	GCCCAGCGTAATG	.	80.0	12.0	71.0	0.0	.	91	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54163250	54163250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSME4	NM_014614	exon7	c.A808G	p.I270V	AATCTATGTACCC	.	59.0	4.0	67.0	0.0	.	247	.	.	Atlas-SNP
BCL11A	53335	hgsc.bcm.edu	hg19	2	60687558	60687558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL11A	NM_022893	exon4	c.A2489C	p.N830T	ATATCATTATTCA	.	50.0	31.0	84.0	0.0	.	298	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61571021	61571021	+	Missense_Mutation	SNP	G	G	T	rs373411362	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USP34	NM_014709	exon16	c.C2429A	p.A810E	AGTTCCGCATGTG	.	173.0	112.0	196.0	0.0	.	334	.	.	Atlas-SNP
ACTR2	10097	hgsc.bcm.edu	hg19	2	65466992	65466992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACTR2	NM_001005386	exon2	c.A55G	p.K19E	TTTGTGAAGTGTG	.	93.0	4.0	104.0	0.0	.	30	.	.	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	hg19	2	67632242	67632242	+	Missense_Mutation	SNP	A	A	G	rs375345566		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ETAA1	NM_019002	exon5	c.A2428G	p.S810G	GCTCAGAGCAACC	.	73.0	5.0	77.0	0.0	.	88	.	.	Atlas-SNP
EXOC6B	23233	hgsc.bcm.edu	hg19	2	72707813	72707813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EXOC6B	NM_015189	exon17	c.A1732G	p.T578A	TGTTGGTGATAAA	.	76.0	4.0	111.0	0.0	.	93	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84924794	84924794	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH6	NM_001370	exon47	c.A7620G	p.L2540L	GGTTTTAGCGGCC	.	64.0	4.0	83.0	0.0	.	194	.	.	Atlas-SNP
PTCD3	55037	hgsc.bcm.edu	hg19	2	86348628	86348628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCD3	NM_017952	exon8	c.A565G	p.N189D	ACAACAAATAGTC	.	98.0	4.0	116.0	0.0	.	51	.	.	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	hg19	2	97365352	97365352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FER1L5	NM_001113382	exon42	c.A4757G	p.D1586G	ACTTCGACCTATT	.	106.0	5.0	105.0	0.0	.	113	.	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116593811	116593811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DPP10	NM_001178034	exon22	c.A2041C	p.I681L	GCACCTATCACAG	.	118.0	17.0	142.0	0.0	.	415	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125192079	125192079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTNAP5	NM_130773	exon5	c.T548G	p.F183C	CTGACTTTGATGG	.	185.0	86.0	232.0	0.0	.	405	.	.	Atlas-SNP
CCDC148	130940	hgsc.bcm.edu	hg19	2	159035423	159035423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC148	NM_138803	exon12	c.A1456G	p.R486G	GTGCTCTCTCTTT	.	89.0	4.0	91.0	0.0	.	64	.	.	Atlas-SNP
GALNT3	2591	hgsc.bcm.edu	hg19	2	166613715	166613715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GALNT3	NM_004482	exon7	c.G1234A	p.V412I	CAACAACAGAGCA	.	89.0	4.0	86.0	0.0	.	65	.	.	Atlas-SNP
BBS5	129880	hgsc.bcm.edu	hg19	2	170343593	170343593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BBS5	NM_152384	exon3	c.A157G	p.T53A	TTGGTAACAAATT	.	83.0	4.0	87.0	0.0	.	27	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179401122	179401122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon357	c.T100352C	p.V33451A	GAAAAGACAGTTT	.	99.0	4.0	119.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179648880	179648880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon16	c.G2692A	p.V898M	TTTTCACCTCAAC	.	259.0	12.0	256.0	0.0	.	18412	.	.	Atlas-SNP
NDUFS1	4719	hgsc.bcm.edu	hg19	2	207008850	207008850	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NDUFS1	NM_001199984	exon10	c.C921T	p.A307A	ATCATAGGCAAAT	.	67.0	4.0	84.0	0.0	.	82	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210761117	210761117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC80	NM_032504	exon27	c.A4363G	p.R1455G	TACCACAGAAACA	.	93.0	5.0	98.0	0.0	.	280	.	.	Atlas-SNP
MREG	55686	hgsc.bcm.edu	hg19	2	216861060	216861060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MREG	NM_018000	exon2	c.T224C	p.V75A	CGAATGACTATCA	.	85.0	5.0	93.0	0.0	.	10	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	232028362	232028362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMD1	NM_002807	exon21	c.A2402G	p.Q801R	AAGTTCAGTATAA	.	75.0	4.0	80.0	0.0	.	77	.	.	Atlas-SNP
AGXT	189	hgsc.bcm.edu	hg19	2	241813472	241813472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	AGXT,NS,adenoma,0,1	AGXT	NM_000030	exon6	c.A673G	p.K225E	AGTGACAAGGCCA	.	79.0	4.0	69.0	1.0	.	50	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1337367	1337367	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTN6	NM_014461	exon6	c.A537G	p.G179G	GACGGGAAACTTG	.	78.0	4.0	123.0	0.0	.	245	.	.	Atlas-SNP
CNTN4	152330	hgsc.bcm.edu	hg19	3	3097904	3097904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	CNTN4_ENST00000418658,rectum,carcinoma,0,2	CNTN4	NM_175607	exon25	c.A3081G	p.X1027W	TTTATGACAAAAG	.	48.0	2.0	74.0	0.0	.	335	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12858556	12858556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CAND2	NM_001162499	exon10	c.C2125T	p.H709Y	GACATGCATGTGG	.	88.0	4.0	81.0	0.0	.	138	.	.	Atlas-SNP
ZNF860	344787	hgsc.bcm.edu	hg19	3	32030646	32030646	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF860	NM_001137674	exon2	c.T75C	p.T25T	CTTGACTTTTAGG	.	72.0	4.0	135.0	0.0	.	96	.	.	Atlas-SNP
GLB1	2720	hgsc.bcm.edu	hg19	3	33110429	33110429	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GLB1	NM_000404	exon3	c.A279G	p.P93P	CTGTCCTGGCCAG	.	95.0	4.0	136.0	0.0	.	51	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39226588	39226588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	XIRP1	NM_194293	exon2	c.T4349C	p.M1450T	CCTTCCATGGGCT	.	49.0	14.0	64.0	0.0	.	173	.	.	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	hg19	3	41439687	41439687	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ULK4	NM_017886	exon35	c.T3561C	p.Y1187Y	CCCTCCATACAGC	.	73.0	4.0	115.0	0.0	.	150	.	.	Atlas-SNP
CCK	885	hgsc.bcm.edu	hg19	3	42305118	42305118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCK	NM_000729	exon4	c.A5G	p.N2S	CCGCTGTTCATGG	.	51.0	4.0	52.0	0.0	.	15	.	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	hg19	3	45153758	45153758	+	Missense_Mutation	SNP	C	C	G	rs149422328	bycluster;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDCP1	NM_178181	exon3	c.G472C	p.G158R	TGACTCCGTCTGG	.	60.0	28.0	94.0	0.0	.	61	.	C|1.000;T|0.000	Atlas-SNP
SHISA5	51246	hgsc.bcm.edu	hg19	3	48510952	48510952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHISA5	NM_016479	exon5	c.T451C	p.S151P	TGGTGGATGTGGT	.	91.0	5.0	114.0	0.0	.	10	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51378810	51378810	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DOCK3	NM_004947	exon38	c.A3909G	p.K1303K	CAACAAAGGCAAG	.	99.0	4.0	153.0	0.0	.	397	.	.	Atlas-SNP
SFMBT1	51460	hgsc.bcm.edu	hg19	3	52962211	52962211	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SFMBT1	NM_016329	exon9	c.T1044G	p.P348P	ACCTGGAGGGGGG	.	28.0	12.0	48.0	0.0	.	53	.	.	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	hg19	3	62180755	62180755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRG	NM_002841	exon10	c.T1238C	p.V413A	GCCATGTCTCACC	.	80.0	6.0	131.0	0.0	.	153	.	.	Atlas-SNP
KBTBD8	84541	hgsc.bcm.edu	hg19	3	67049555	67049555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KBTBD8	NM_032505	exon2	c.A167G	p.D56G	AAGTGGATCACGG	.	94.0	4.0	139.0	0.0	.	101	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	96533714	96533714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPHA6	NM_001080448	exon1	c.T247C	p.S83P	CACTTCTCTTTAA	.	109.0	5.0	128.0	0.0	.	439	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113379962	113379962	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	KIAA2018,NS,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.T567C	p.T189T	ATTGCAAGTCCTC	.	97.0	4.0	98.0	0.0	.	180	.	.	Atlas-SNP
GRAMD1C	54762	hgsc.bcm.edu	hg19	3	113601609	113601609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRAMD1C	NM_017577	exon6	c.C470T	p.T157I	TCTTCACATCTTT	.	123.0	5.0	137.0	0.0	.	71	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119133131	119133131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARHGAP31	NM_020754	exon12	c.T2355C	p.P785P	TGCTCCTCCCCCT	.	40.0	4.0	56.0	0.0	.	175	.	.	Atlas-SNP
LRRC58	116064	hgsc.bcm.edu	hg19	3	120053943	120053943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRRC58	NM_001099678	exon3	c.A673G	p.T225A	GATATGTCAGCAA	.	73.0	4.0	53.0	0.0	.	18	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120941989	120941989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STXBP5L	NM_014980	exon11	c.A1096G	p.T366A	TGTGAAACGCCCT	.	60.0	4.0	72.0	0.0	.	159	.	.	Atlas-SNP
UROC1	131669	hgsc.bcm.edu	hg19	3	126229602	126229602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UROC1	NM_001165974	exon2	c.G162A	p.P54P	GACATCCGGGGGG	.	45.0	9.0	39.0	0.0	.	150	.	.	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129291728	129291728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PLXND1	NM_015103	exon14	c.A2894G	p.N965S	GAGGCGTTCACGG	.	94.0	4.0	66.0	0.0	.	149	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130098302	130098302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	COL6A5	NM_153264	exon4	c.C709A	p.L237I	GCTGACCTCGTGT	.	201.0	90.0	163.0	0.0	.	205	.	.	Atlas-SNP
ATP2C1	27032	hgsc.bcm.edu	hg19	3	130735014	130735014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATP2C1	NM_001199180	exon28	c.A2845G	p.S949G	GAGAGGAGTGGAC	.	105.0	5.0	74.0	0.0	.	94	.	.	Atlas-SNP
U2SURP	23350	hgsc.bcm.edu	hg19	3	142740318	142740318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	U2SURP	NM_001080415	exon10	c.T773C	p.L258P	TAGTTCTTGATGA	.	98.0	4.0	152.0	0.0	.	66	.	.	Atlas-SNP
LRRIQ4	344657	hgsc.bcm.edu	hg19	3	169548290	169548290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRRIQ4	NM_001080460	exon3	c.A1205G	p.E402G	TCAAAGAGCTATA	.	66.0	4.0	62.0	0.0	.	68	.	.	Atlas-SNP
MFN1	55669	hgsc.bcm.edu	hg19	3	179095207	179095207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MFN1	NM_033540	exon12	c.A1300G	p.N434D	CATCCTAATCCAG	.	96.0	4.0	107.0	0.0	.	72	.	.	Atlas-SNP
CCDC39	339829	hgsc.bcm.edu	hg19	3	180361933	180361933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	CCDC39_ENST00000442201,caecum,carcinoma,0,2	CCDC39	NM_181426	exon12	c.T1640C	p.L547P	TTATCAAGTTCTT	.	81.0	5.0	97.0	0.0	.	242	.	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	hg19	3	183655819	183655819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABCC5	NM_005688	exon26	c.C3724T	p.R1242C	CCAGACGGAAGAG	.	124.0	27.0	126.0	0.0	.	142	.	.	Atlas-SNP
PPP2R2C	5522	hgsc.bcm.edu	hg19	4	6377634	6377634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP2R2C	NM_181876	exon4	c.T359A	p.I120N	TCGGTAATCTTCC	.	190.0	92.0	208.0	0.0	.	63	.	.	Atlas-SNP
WDR1	9948	hgsc.bcm.edu	hg19	4	10090367	10090367	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WDR1	NM_005112	exon4	c.139-2A>G	.	TGGTCCTGCAGGA	.	70.0	5.0	66.0	0.0	.	93	.	.	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15539668	15539668	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CC2D2A	NM_001080522	exon17	c.A1911G	p.R637R	GGAGAGAGCAGCC	.	117.0	5.0	84.0	0.0	.	158	.	.	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	hg19	4	23816124	23816124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPARGC1A	NM_013261	exon8	c.T982C	p.S328P	TCTTTGATGGTGG	.	79.0	4.0	100.0	0.0	.	129	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30724545	30724545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDH7	NM_032457	exon1	c.T1501C	p.F501L	CGGGAGTTCAACG	.	73.0	4.0	62.0	0.0	.	215	.	.	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	hg19	4	36069848	36069848	+	Missense_Mutation	SNP	T	T	C	rs202134005	by1000genomes;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP2	NM_015230	exon33	c.A4796G	p.E1599G	ACGGACTCTTTAT	.	57.0	4.0	59.0	0.0	.	210	.	T|0.999;A|0.001	Atlas-SNP
KIAA1239	57495	hgsc.bcm.edu	hg19	4	37447599	37447599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA1239	NM_001144990	exon7	c.T3989A	p.I1330N	GGGAAATCATTTA	.	129.0	6.0	127.0	0.0	.	79	.	.	Atlas-SNP
AFP	174	hgsc.bcm.edu	hg19	4	74308085	74308085	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AFP	NM_001134	exon5	c.T555C	p.Y185Y	TCGCTATGACAAA	.	63.0	4.0	114.0	0.0	.	60	.	.	Atlas-SNP
SDAD1	55153	hgsc.bcm.edu	hg19	4	76882410	76882410	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SDAD1	NM_018115	exon15	c.A1233G	p.E411E	AAGTTCTTCAGTC	.	87.0	4.0	142.0	0.0	.	47	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79204044	79204044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRAS1	NM_001166133	exon12	c.A1178G	p.E393G	GCTACGAGCCCTC	.	97.0	6.0	131.0	0.0	.	779	.	.	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	hg19	4	82027009	82027009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRKG2	NM_006259	exon15	c.A2021G	p.K674R	GTTATCTTCCTGG	.	92.0	4.0	142.0	0.0	.	195	.	.	Atlas-SNP
SEC31A	22872	hgsc.bcm.edu	hg19	4	83778913	83778913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	SEC31A_ENST00000395310,NS,malignant_melanoma,0,1	SEC31A	NM_001077206	exon15	c.T1631C	p.I544T	TCTTTAATGTGCT	.	21.0	2.0	50.0	0.0	.	227	.	.	Atlas-SNP
AFF1	4299	hgsc.bcm.edu	hg19	4	88052964	88052964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AFF1	NM_001166693	exon18	c.T3121A	p.S1041T	TTAAAATCCTTCT	.	104.0	19.0	181.0	0.0	.	102	.	.	Atlas-SNP
MEPE	56955	hgsc.bcm.edu	hg19	4	88766777	88766777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MEPE	NM_020203	exon4	c.T757C	p.S253P	GATATATCTCCTT	.	78.0	4.0	118.0	0.0	.	86	.	.	Atlas-SNP
SPRY1	10252	hgsc.bcm.edu	hg19	4	124323669	124323669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPRY1	NM_001258039	exon2	c.A923G	p.E308G	AGCTGGAGAGCTG	.	92.0	4.0	132.0	0.0	.	28	.	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	hg19	4	125592939	125592939	+	Missense_Mutation	SNP	T	T	C	rs200716397		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANKRD50	NM_020337	exon4	c.A1493G	p.Q498R	AACAGCTGTAGCA	.	76.0	4.0	116.0	0.0	.	136	.	T|0.999;C|0.001	Atlas-SNP
UCP1	7350	hgsc.bcm.edu	hg19	4	141484605	141484605	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UCP1	NM_021833	exon3	c.G393A	p.G131G	GGGTTGCCCAATG	.	72.0	32.0	110.0	0.0	.	33	.	.	Atlas-SNP
RNF150	57484	hgsc.bcm.edu	hg19	4	141888829	141888829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNF150	NM_020724	exon2	c.T683C	p.V228A	TAAAAGACGAGCC	.	97.0	5.0	124.0	0.0	.	94	.	.	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	hg19	4	147561644	147561644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	POU4F2	NM_004575	exon2	c.T914C	p.L305P	AGTCCCTCACACT	.	51.0	4.0	76.0	0.0	.	83	.	.	Atlas-SNP
TTC29	83894	hgsc.bcm.edu	hg19	4	147860979	147860979	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTC29	NM_031956	exon3	c.T69C	p.P23P	GGAGCAAGGCAGC	.	74.0	4.0	175.0	0.0	.	63	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151773418	151773418	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRBA	NM_006726	exon23	c.T3444C	p.F1148F	ATTACCAAACATG	.	52.0	4.0	118.0	0.0	.	253	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155156115	155156115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DCHS2	NM_017639	exon25	c.A8324G	p.D2775G	TAGTTGTCTTTTC	.	89.0	4.0	171.0	0.0	.	594	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155278418	155278418	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DCHS2	NM_017639	exon6	c.A753G	p.E251E	CATTACTTCCTTG	.	33.0	4.0	42.0	0.0	.	594	.	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169282339	169282339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	DDX60L,colon,carcinoma,0,1	DDX60L	NM_001012967	exon37	c.A4952G	p.K1651R	AAACACTTTAAAA	.	94.0	4.0	113.0	0.0	.	116	.	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169317190	169317190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon27	c.A3577G	p.K1193E	GAATCTTCAGATT	.	146.0	6.0	207.0	0.0	.	116	.	.	Atlas-SNP
ASB5	140458	hgsc.bcm.edu	hg19	4	177190150	177190150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASB5	NM_080874	exon1	c.T110C	p.I37T	CTGAGGATGGCAA	.	77.0	4.0	101.0	0.0	.	88	.	.	Atlas-SNP
FAM149A	25854	hgsc.bcm.edu	hg19	4	187077241	187077241	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM149A	NM_001006655	exon6	c.T471C	p.C157C	TGACTGTGTCAAA	.	71.0	4.0	108.0	0.0	.	52	.	.	Atlas-SNP
KLKB1	3818	hgsc.bcm.edu	hg19	4	187175807	187175807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLKB1	NM_000892	exon12	c.A1379G	p.D460G	CAAAAGATACACC	.	79.0	4.0	136.0	0.0	.	155	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5454689	5454689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0947	NM_015325	exon11	c.A629G	p.E210G	TGAAGGAACTCTG	.	83.0	4.0	64.0	0.0	.	301	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26906841	26906841	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH9	NM_016279	exon4	c.G630T	p.V210V	TGGGTCCACTGAA	.	73.0	20.0	87.0	0.0	.	305	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38958582	38958582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RICTOR	NM_152756	exon24	c.T2383A	p.S795T	GGTGGGATAACGC	.	217.0	93.0	220.0	0.0	.	182	.	.	Atlas-SNP
OXCT1	5019	hgsc.bcm.edu	hg19	5	41794835	41794835	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OXCT1	NM_000436	exon12	c.T1116C	p.T372T	AAGAATAGTAACT	.	66.0	4.0	46.0	0.0	.	54	.	.	Atlas-SNP
FAM169A	26049	hgsc.bcm.edu	hg19	5	74130327	74130327	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM169A	NM_015566	exon5	c.T414C	p.C138C	GCTATGACACAGG	.	99.0	4.0	119.0	0.0	.	61	.	.	Atlas-SNP
ACOT12	134526	hgsc.bcm.edu	hg19	5	80655835	80655835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACOT12	NM_130767	exon5	c.T383C	p.L128P	GTTAGAAGTGTGA	.	83.0	4.0	73.0	0.0	.	57	.	.	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	hg19	5	101755554	101755554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO6A1	NM_173488	exon8	c.C1448T	p.A483V	ATCCCAGCAAATT	.	195.0	13.0	243.0	0.0	.	153	.	.	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	hg19	5	102490644	102490644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPIP5K2	NM_015216	exon12	c.A1400G	p.E467G	TATTAGAGATGTG	.	55.0	4.0	68.0	0.0	.	98	.	.	Atlas-SNP
EFNA5	1946	hgsc.bcm.edu	hg19	5	106763128	106763128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EFNA5	NM_001962	exon2	c.C208A	p.P70T	CTTCTGGGACGGA	.	97.0	4.0	123.0	0.0	.	16	.	.	Atlas-SNP
FER	2241	hgsc.bcm.edu	hg19	5	108380491	108380491	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FER	NM_005246	exon15	c.A1824G	p.E608E	ACAAGAAGCCAAG	.	95.0	4.0	108.0	0.0	.	100	.	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112903376	112903376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	YTHDC2	NM_022828	exon23	c.C3074T	p.A1025V	AAGCTGCAGCAAT	.	90.0	4.0	96.0	0.0	.	118	.	.	Atlas-SNP
GRAMD3	65983	hgsc.bcm.edu	hg19	5	125813469	125813469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRAMD3	NM_001146319	exon6	c.T617C	p.V206A	CAACAGTCACAGA	.	91.0	4.0	87.0	0.0	.	30	.	.	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	hg19	5	140188502	140188502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHA4	NM_031500	exon1	c.T1730C	p.V577A	GCGCAGTGAGCGA	.	94.0	4.0	60.0	0.0	.	419	.	.	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	hg19	5	140605206	140605206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	PCDHB14,NS,carcinoma,0,1	PCDHB14	NM_018934	exon1	c.C2129T	p.A710V	TCGTGGCGGTGCG	.	57.0	4.0	34.0	0.0	.	132	.	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140744024	140744024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHGA5	NM_032054	exon1	c.T127C	p.S43P	AAAGGCTCCTTCG	.	90.0	4.0	108.0	0.0	.	215	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141059772	141059772	+	Silent	SNP	G	G	A	rs146312944		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP3	NM_022481	exon2	c.C282T	p.P94P	CGGCACGGGCTTA	.	134.0	66.0	150.0	0.0	.	139	.	G|1.000;A|0.000	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150945475	150945475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAT2	NM_001447	exon1	c.G3018T	p.R1006S	TAGGGGCCTCCCA	.	154.0	9.0	128.0	0.0	.	465	.	.	Atlas-SNP
SGCD	6444	hgsc.bcm.edu	hg19	5	155935693	155935693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SGCD	NM_000337	exon4	c.A275T	p.K92I	ACGCCAAAGAAAT	.	63.0	32.0	70.0	0.0	.	52	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	hg19	5	156755023	156755023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CYFIP2	NM_001037332	exon19	c.C2122G	p.Q708E	GCAGACCAGATCT	.	108.0	21.0	115.0	0.0	.	354	.	.	Atlas-SNP
HMMR	3161	hgsc.bcm.edu	hg19	5	162911119	162911119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HMMR	NM_001142556	exon16	c.T1830G	p.N610K	GTTGAATGAACAT	.	133.0	9.0	127.0	0.0	.	64	.	.	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	hg19	6	17834225	17834225	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF13A	NM_001105567	exon12	c.A1233G	p.E411E	CTTCTCTTCCCAA	.	125.0	5.0	115.0	0.0	.	276	.	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156843	26156843	+	Missense_Mutation	SNP	G	G	T	rs150948103	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	HIST1H1E,NS,carcinoma,0,1	HIST1H1E	NM_005321	exon1	c.G225T	p.K75N	GGAGAAGAACAAC	.	118.0	28.0	129.0	0.0	.	69	.	G|0.994;A|0.006	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	hg19	6	31599888	31599888	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRRC2A	NM_004638	exon16	c.T3438C	p.P1146P	CCCACCTTCACCA	.	87.0	4.0	90.0	0.0	.	152	.	.	Atlas-SNP
BAG6	7917	hgsc.bcm.edu	hg19	6	31610072	31610072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BAG6	NM_004639	exon15	c.C2062T	p.P688S	CTCCAGGACTCCC	.	102.0	7.0	66.0	0.0	.	73	.	.	Atlas-SNP
FAM83B	222584	hgsc.bcm.edu	hg19	6	54805894	54805894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM83B	NM_001010872	exon5	c.A2125G	p.S709G	TCTAAAAGCATGC	.	78.0	4.0	72.0	0.0	.	186	.	.	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	hg19	6	82461742	82461742	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM46A	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	34.0	4.0	14.0	0.0	.	37	.	.	Atlas-SNP
PGM3	5238	hgsc.bcm.edu	hg19	6	83889643	83889643	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PGM3	NM_001199917	exon8	c.A915G	p.G305G	TGCATCTCCATCA	.	108.0	5.0	116.0	0.0	.	39	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90428856	90428856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MDN1	NM_014611	exon41	c.A6056G	p.Q2019R	CTTACCTGAACAT	.	57.0	4.0	60.0	0.0	.	478	.	.	Atlas-SNP
MANEA	79694	hgsc.bcm.edu	hg19	6	96053973	96053973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MANEA	NM_024641	exon5	c.A1081G	p.I361V	GGATACATAGATA	.	46.0	4.0	59.0	0.0	.	58	.	.	Atlas-SNP
NDUFAF4	29078	hgsc.bcm.edu	hg19	6	97339243	97339243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	NDUFAF4,colon,carcinoma,0,1	NDUFAF4	NM_014165	exon3	c.G265A	p.E89K	TCGGCTCTTGACA	.	38.0	2.0	48.0	0.0	.	16	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101109765	101109765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASCC3	NM_006828	exon16	c.A2620G	p.S874G	AATGGCTGAGTTT	.	110.0	5.0	108.0	0.0	.	205	.	.	Atlas-SNP
FRK	2444	hgsc.bcm.edu	hg19	6	116263618	116263618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRK	NM_002031	exon8	c.A1477G	p.T493A	AGTCTGTTTCAAA	.	102.0	5.0	143.0	0.0	.	78	.	.	Atlas-SNP
ZUFSP	221302	hgsc.bcm.edu	hg19	6	116987986	116987986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	ZUFSP,NS,carcinoma,0,1	ZUFSP	NM_145062	exon2	c.A370G	p.T124A	ATTCAGTTAAGTT	.	134.0	6.0	171.0	1.0	.	46	.	.	Atlas-SNP
GJA1	2697	hgsc.bcm.edu	hg19	6	121768871	121768871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA1	NM_000165	exon2	c.G878A	p.R293K	GCGACAGAAACAA	.	50.0	6.0	85.0	0.0	.	61	.	.	Atlas-SNP
CENPW	387103	hgsc.bcm.edu	hg19	6	126661441	126661441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CENPW	NM_001012507	exon1	c.T22C	p.S8P	ATAGTCTCCCAGA	.	68.0	4.0	66.0	0.0	.	7	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128388889	128388889	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRK	NM_001135648	exon12	c.A1932G	p.R644R	GGCTTCTCTCTTG	.	83.0	4.0	97.0	0.0	.	330	.	.	Atlas-SNP
MOXD1	26002	hgsc.bcm.edu	hg19	6	132649228	132649228	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MOXD1	NM_015529	exon6	c.A870G	p.G290G	GGATAATCCAACA	.	102.0	5.0	118.0	0.0	.	136	.	.	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135323935	135323935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HBS1L	NM_006620	exon5	c.T476C	p.V159A	TTTGGCACAATTT	.	125.0	5.0	152.0	0.0	.	75	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138576727	138576727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA1244	NM_020340	exon10	c.T925C	p.C309R	TGCTCCTGCACTG	.	85.0	4.0	86.0	0.0	.	236	.	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143092668	143092668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HIVEP2	NM_006734	exon5	c.T3208C	p.S1070P	ACGGTGATACCGT	.	95.0	4.0	78.0	0.0	.	225	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146243946	146243946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHPRH	NM_173082	exon19	c.T3584C	p.F1195S	AGTAAGAACTGAA	.	78.0	4.0	91.0	0.0	.	169	.	.	Atlas-SNP
ESR1	2099	hgsc.bcm.edu	hg19	6	152265434	152265434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ESR1	NM_000125	exon4	c.T887C	p.L296P	GCCCGCTCATGAT	.	109.0	5.0	99.0	0.0	.	94	.	.	Atlas-SNP
MTRF1L	54516	hgsc.bcm.edu	hg19	6	153313995	153313995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MTRF1L	NM_019041	exon5	c.A802G	p.T268A	CACCTGTTGGAAG	.	63.0	4.0	42.0	0.0	.	21	.	.	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	hg19	6	155775983	155775983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NOX3	NM_015718	exon3	c.A217G	p.S73G	TTCGACTGACAGG	.	80.0	4.0	60.0	0.0	.	93	.	.	Atlas-SNP
AGPAT4	56895	hgsc.bcm.edu	hg19	6	161567572	161567572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT4	NM_020133	exon7	c.A827G	p.K276R	TAGAGCTTGTGCA	.	64.0	4.0	68.0	0.0	.	50	.	.	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	hg19	6	165863852	165863852	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE10A	NM_001130690	exon5	c.226-2A>G	.	TGGTACTTTGGAT	.	84.0	5.0	100.0	0.0	.	154	.	.	Atlas-SNP
PDCD2	5134	hgsc.bcm.edu	hg19	6	170886665	170886665	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDCD2	NM_002598	exon6	c.T1017C	p.D339D	TGTTACATCCTGC	.	99.0	4.0	107.0	0.0	.	13	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2963882	2963882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CARD11	NM_032415	exon15	c.A1925G	p.K642R	GAGAACTTCCTGA	.	91.0	4.0	82.0	0.0	.	339	.	.	Atlas-SNP
ICA1	3382	hgsc.bcm.edu	hg19	7	8198174	8198174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ICA1	NM_022307	exon7	c.A688G	p.M230V	CTAGCATGTGAGA	.	108.0	46.0	134.0	0.0	.	65	.	.	Atlas-SNP
ICA1	3382	hgsc.bcm.edu	hg19	7	8198175	8198175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ICA1	NM_022307	exon7	c.C687A	p.H229Q	TAGCATGTGAGAC	.	111.0	47.0	134.0	0.0	.	65	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12391294	12391294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VWDE	NM_001135924	exon19	c.T3791C	p.L1264P	CTTGTGAGAACCA	.	92.0	4.0	80.0	0.0	.	123	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47849144	47849144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKD1L1	NM_138295	exon51	c.T7613C	p.L2538P	ACACAGAGGTGGA	.	45.0	5.0	45.0	0.0	.	328	.	.	Atlas-SNP
GNAI1	2770	hgsc.bcm.edu	hg19	7	79764532	79764532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GNAI1	NM_002069	exon1	c.T56C	p.I19T	AGATGATCGACCG	.	98.0	4.0	82.0	0.0	.	44	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82581498	82581498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	Q9Y6V0-3,colon,carcinoma,-1,3	PCLO	NM_014510	exon5	c.T8771A	p.I2924K	TCTTCTATTATTT	.	48.0	5.0	41.0	2.0	.	1506	.	.	Atlas-SNP
FZD1	8321	hgsc.bcm.edu	hg19	7	90894459	90894459	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.,4	FZD1	NM_003505	exon1	c.A264G	p.Q88Q	GCAGCAACCGCCG	.	19.0	2.0	6.0	1.0	.	64	.	.	Atlas-SNP
KRIT1	889	hgsc.bcm.edu	hg19	7	91851228	91851228	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRIT1	NM_194456	exon15	c.A1551G	p.E517E	TTCAACTTCCAAG	.	73.0	4.0	50.0	0.0	.	66	.	.	Atlas-SNP
ANKIB1	54467	hgsc.bcm.edu	hg19	7	92028083	92028083	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANKIB1	NM_019004	exon20	c.T3090C	p.S1030S	TGTCAGTGAAGGT	.	129.0	51.0	103.0	0.0	.	92	.	.	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	hg19	7	96635385	96635385	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	DLX6,right_lower_lobe,carcinoma,0,1	DLX6	NM_005222	exon1	c.G96A	p.Q32Q	GCAGCAGCAACAG	.	28.0	3.0	14.0	0.0	.	37	.	.	Atlas-SNP
AP4M1	9179	hgsc.bcm.edu	hg19	7	99704091	99704091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AP4M1	NM_004722	exon14	c.A1091G	p.D364G	GCTGGGACCTGCC	.	77.0	4.0	77.0	0.0	.	39	.	.	Atlas-SNP
FBXO24	26261	hgsc.bcm.edu	hg19	7	100187324	100187324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FBXO24	NM_012172	exon1	c.A61G	p.S21G	GGCAGGAGCAGGG	.	130.0	6.0	118.0	0.0	.	125	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104746372	104746372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MLL5	NM_018682	exon18	c.C2518T	p.Q840X	CCCTGTCAAGAAA	.	152.0	24.0	154.0	0.0	.	173	.	.	Atlas-SNP
DUS4L	11062	hgsc.bcm.edu	hg19	7	107216859	107216859	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DUS4L	NM_001270419	exon7	c.A528G	p.E176E	GGCTGAAGCAACA	.	98.0	4.0	69.0	0.0	.	27	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107807498	107807498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NRCAM	NM_001037132	exon27	c.G3334A	p.E1112K	CAATTTCTTTTCT	.	77.0	4.0	95.0	0.0	.	267	.	.	Atlas-SNP
KLHDC10	23008	hgsc.bcm.edu	hg19	7	129762020	129762020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHDC10	NM_014997	exon5	c.T757C	p.S253P	AACCTATCCTGTG	.	80.0	4.0	87.0	0.0	.	36	.	.	Atlas-SNP
TMEM209	84928	hgsc.bcm.edu	hg19	7	129818251	129818251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM209	NM_032842	exon10	c.A1237G	p.R413G	TGATCCTTTCAAA	.	54.0	4.0	60.0	0.0	.	31	.	.	Atlas-SNP
AGAP3	116988	hgsc.bcm.edu	hg19	7	150825737	150825737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGAP3	NM_031946	exon10	c.A1292G	p.D431G	TCTGTGACAACGG	.	75.0	4.0	61.0	0.0	.	121	.	.	Atlas-SNP
PPP3CC	5533	hgsc.bcm.edu	hg19	8	22333119	22333119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP3CC	NM_001243974	exon3	c.A354G	p.R118R	GGACAGAGGCTAT	.	85.0	4.0	90.0	0.0	.	39	.	.	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37672476	37672476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GPR124	NM_032777	exon2	c.T329C	p.L110P	CACTGCTGGAGAA	.	98.0	4.0	117.0	0.0	.	85	.	.	Atlas-SNP
AGPAT6	137964	hgsc.bcm.edu	hg19	8	41472557	41472557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT6	NM_178819	exon10	c.T1043C	p.V348A	ACCCTGTTGCTAT	.	90.0	5.0	124.0	0.0	.	32	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41791551	41791551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001099412	exon18	c.A4187G	p.H1396R	TCTTCGTGGTCGT	.	98.0	4.0	125.0	0.0	.	.	.	.	Atlas-SNP
PLAT	5327	hgsc.bcm.edu	hg19	8	42045063	42045063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PLAT	NM_000930	exon6	c.A392G	p.Q131R	ATGCCCTGGTCCT	.	73.0	4.0	69.0	0.0	.	62	.	.	Atlas-SNP
HGSNAT	138050	hgsc.bcm.edu	hg19	8	43047567	43047567	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HGSNAT	NM_152419	exon13	c.T1371C	p.S457S	CCCATCTTCTGCT	.	88.0	4.0	70.0	0.0	.	85	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55542178	55542178	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RP1	NM_006269	exon4	c.T5736C	p.A1912A	GTATGCTCTTTGT	.	58.0	4.0	77.0	0.0	.	429	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61757511	61757511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD7	NM_017780	exon22	c.C4939G	p.L1647V	ACCATCCTGGTGT	.	99.0	5.0	78.0	0.0	.	534	.	.	Atlas-SNP
PDE7A	5150	hgsc.bcm.edu	hg19	8	66636575	66636575	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE7A	NM_001242318	exon11	c.A1077G	p.K359K	AGCACATTTCAAA	.	58.0	4.0	73.0	0.0	.	78	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69002857	69002857	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PREX2	NM_025170	exon20	c.T2157C	p.I719I	GTGCATTATCAAG	.	94.0	4.0	116.0	0.0	.	614	.	.	Atlas-SNP
PI15	51050	hgsc.bcm.edu	hg19	8	75737542	75737542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PI15	NM_015886	exon2	c.A58G	p.S20G	GAAGCAAGTACCG	.	120.0	5.0	131.0	0.0	.	73	.	.	Atlas-SNP
KLF10	7071	hgsc.bcm.edu	hg19	8	103664250	103664250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLF10	NM_005655	exon3	c.T310C	p.S104P	CTTGAGAGGGTTC	.	87.0	4.0	80.0	0.0	.	44	.	.	Atlas-SNP
RAD21	5885	hgsc.bcm.edu	hg19	8	117870613	117870613	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.T459C	p.S153S	TAAAATACTGATG	.	77.0	4.0	67.0	0.0	.	95	.	.	Atlas-SNP
RAD21	5885	hgsc.bcm.edu	hg19	8	117870655	117870655	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.A417G	p.R139R	TTCCACTCTACTC	.	96.0	4.0	76.0	0.0	.	95	.	.	Atlas-SNP
RAD21	5885	hgsc.bcm.edu	hg19	8	117870690	117870690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.G382T	p.D128Y	CCACATCGATGTC	.	82.0	4.0	56.0	0.0	.	95	.	.	Atlas-SNP
TAF2	6873	hgsc.bcm.edu	hg19	8	120810035	120810035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TAF2	NM_003184	exon7	c.T844C	p.S282P	GGTATGATGTGGT	.	95.0	4.0	91.0	0.0	.	204	.	.	Atlas-SNP
DSCC1	79075	hgsc.bcm.edu	hg19	8	120850618	120850618	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DSCC1	NM_024094	exon8	c.A954G	p.R318R	TTCTGGTCTCGAG	.	137.0	6.0	118.0	0.0	.	40	.	.	Atlas-SNP
HHLA1	10086	hgsc.bcm.edu	hg19	8	133116394	133116394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HHLA1	NM_001145095	exon2	c.G100A	p.A34T	TCTTGGCTTCTCC	.	95.0	4.0	81.0	0.0	.	35	.	.	Atlas-SNP
PPP1R16A	84988	hgsc.bcm.edu	hg19	8	145726669	145726669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP1R16A	NM_032902	exon9	c.C1195T	p.P399S	CCGCCGCCCCCGG	.	7.0	7.0	1.0	0.0	.	25	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2029231	2029231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMARCA2	NM_139045	exon2	c.T209C	p.M70T	AAGGCATGCATCA	.	73.0	4.0	103.0	0.0	.	313	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18636002	18636002	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADAMTSL1	NM_052866	exon6	c.T663C	p.G221G	AAAAGGTCCTGAT	.	98.0	4.0	163.0	0.0	.	306	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33351736	33351736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NFX1	NM_147133	exon16	c.T2603C	p.M868T	CGTGTATGGCACC	.	54.0	4.0	54.0	0.0	.	85	.	.	Atlas-SNP
CREB3	10488	hgsc.bcm.edu	hg19	9	35733445	35733445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CREB3	NM_006368	exon4	c.A398G	p.E133G	AGAAGGAGGGGCT	.	84.0	4.0	125.0	0.0	.	24	.	.	Atlas-SNP
SMC5	23137	hgsc.bcm.edu	hg19	9	72967130	72967130	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMC5	NM_015110	exon25	c.T3189C	p.S1063S	TTATTCTGAAAAG	.	80.0	4.0	102.0	0.0	.	96	.	.	Atlas-SNP
C9orf41	138199	hgsc.bcm.edu	hg19	9	77614715	77614715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C9orf41	NM_152420	exon4	c.T662C	p.L221P	TAACCTAGCATAG	.	24.0	4.0	43.0	0.0	.	57	.	.	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	hg19	9	78947423	78947423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCSK5	NM_001190482	exon33	c.A4564G	p.S1522G	TGCCACAGCTCTT	.	98.0	4.0	141.0	0.0	.	329	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79986002	79986002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	VPS13A_ENST00000376634,NS,carcinoma,0,3	VPS13A	NM_001018038	exon67	c.C9014T	p.A3005V	TAGGAGCGGTAGC	.	92.0	4.0	105.0	0.0	.	735	.	.	Atlas-SNP
IARS	3376	hgsc.bcm.edu	hg19	9	95051645	95051645	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IARS	NM_013417	exon2	c.G57A	p.L19L	AAACTCCAAGATT	.	58.0	4.0	115.0	0.0	.	74	.	.	Atlas-SNP
IPPK	64768	hgsc.bcm.edu	hg19	9	95411768	95411768	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IPPK	NM_022755	exon5	c.A381G	p.A127A	GTGCTCTGCAAAG	.	92.0	4.0	118.0	0.0	.	34	.	.	Atlas-SNP
C9orf3	84909	hgsc.bcm.edu	hg19	9	97535345	97535345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C9orf3	NM_001193331	exon3	c.C859T	p.P287S	CAGGAGCCACCCG	.	97.0	4.0	188.0	0.0	.	100	.	.	Atlas-SNP
HSD17B3	3293	hgsc.bcm.edu	hg19	9	99006632	99006632	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HSD17B3	NM_000197	exon9	c.A651G	p.K217K	TTTTGCTTTATAT	.	75.0	4.0	104.0	0.0	.	32	.	.	Atlas-SNP
OR2K2	26248	hgsc.bcm.edu	hg19	9	114089950	114089950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR2K2	NM_205859	exon1	c.T764C	p.L255P	ATAGAGAGGGCAG	.	61.0	4.0	101.0	0.0	.	77	.	.	Atlas-SNP
DNAJC25	548645	hgsc.bcm.edu	hg19	9	114411855	114411855	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAJC25	NM_001015882	exon3	c.A612G	p.K204K	AGAAAAAGGCAAA	.	81.0	4.0	118.0	0.0	.	20	.	.	Atlas-SNP
SLC46A2	57864	hgsc.bcm.edu	hg19	9	115652239	115652239	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC46A2	NM_033051	exon1	c.C723T	p.P241P	CACGGCGGGGAGC	.	70.0	51.0	92.0	0.0	.	30	.	.	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	hg19	9	116358041	116358041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RGS3	NM_144488	exon25	c.A3407G	p.K1136R	CATGCAAGGAGGT	.	77.0	4.0	93.0	0.0	.	251	.	.	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	hg19	9	119976991	119976991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	ASTN2,right_upper_lobe,carcinoma,+2,1	ASTN2	NM_014010	exon3	c.C661G	p.L221V	ACACCAGCAGCAG	.	42.0	2.0	72.0	0.0	.	307	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123937427	123937427	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTRL	NM_007018	exon41	c.A6879G	p.A2293A	CTCTGCAGATTCA	.	79.0	4.0	109.0	0.0	.	161	.	.	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	hg19	9	125613389	125613389	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RC3H2	NM_001100588	exon20	c.A3351G	p.K1117K	ACTCTGTTTCTTC	.	77.0	5.0	147.0	0.0	.	150	.	.	Atlas-SNP
ENG	2022	hgsc.bcm.edu	hg19	9	130588025	130588025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ENG	NM_001114753	exon5	c.C638T	p.A213V	TGGCCGGCCACGC	.	24.0	4.0	26.0	0.0	.	44	.	.	Atlas-SNP
PKN3	29941	hgsc.bcm.edu	hg19	9	131469012	131469012	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKN3	NM_013355	exon4	c.T432C	p.A144A	GGCAGCTGCCCAG	.	54.0	5.0	57.0	0.0	.	62	.	.	Atlas-SNP
ADAMTS13	11093	hgsc.bcm.edu	hg19	9	136304502	136304502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADAMTS13	NM_139027	exon15	c.T1721C	p.L574P	CATTTCTGACAGT	.	78.0	4.0	123.0	0.0	.	113	.	.	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	hg19	10	8115947	8115947	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GATA3	NM_001002295	exon6	c.A1296G	p.G432G	CTTTGGACCACAC	.	104.0	6.0	69.0	0.0	.	182	.	.	Atlas-SNP
PHYH	5264	hgsc.bcm.edu	hg19	10	13333891	13333891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PHYH	NM_006214	exon5	c.T436C	p.F146L	CAGTGAAGCACTC	.	63.0	4.0	44.0	0.0	.	50	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21806681	21806681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_207371	exon4	c.A71G	p.K24R	ATTTGCTTCCCTT	.	148.0	6.0	90.0	0.0	.	.	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55945028	55945028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	PCDH15_ENST00000417177,colon,carcinoma,0,4	PCDH15	NM_001142763	exon13	c.A1321G	p.T441A	CTTTTGTCTTTGA	.	72.0	3.0	130.0	0.0	.	1715	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	56288150	56288150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDH15	NM_001142763	exon3	c.A104G	p.E35G	TTACCCTCATATT	.	73.0	4.0	91.0	0.0	.	1715	.	.	Atlas-SNP
CCDC6	8030	hgsc.bcm.edu	hg19	10	61612353	61612353	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC6	NM_005436	exon2	c.A411G	p.E137E	TTCTTCTTCTTTC	.	84.0	4.0	128.0	0.0	.	44	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61843261	61843261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANK3	NM_001204404	exon34	c.T4192C	p.F1398L	TGGAAAATGGCAG	.	59.0	4.0	88.0	0.0	.	703	.	.	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	hg19	10	70515291	70515291	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCAR1	NM_018237	exon13	c.A1623G	p.Q541Q	CACACAATGGTAA	.	95.0	4.0	160.0	0.0	.	118	.	.	Atlas-SNP
STOX1	219736	hgsc.bcm.edu	hg19	10	70641820	70641820	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STOX1	NM_001130160	exon2	c.A417G	p.V139V	GATTGTAGTAACG	.	85.0	4.0	161.0	0.0	.	75	.	.	Atlas-SNP
HKDC1	80201	hgsc.bcm.edu	hg19	10	71025391	71025391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HKDC1	NM_025130	exon17	c.T2423C	p.L808P	TGGGCCTGGACAG	.	88.0	27.0	76.0	0.0	.	98	.	.	Atlas-SNP
PALD1	27143	hgsc.bcm.edu	hg19	10	72292498	72292498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_014431	exon6	c.A755G	p.E252G	CGGAGGAGGTGTA	.	79.0	4.0	94.0	0.0	.	.	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76735857	76735857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_012330	exon8	c.T1762C	p.F588L	CACTTCTTTGGCA	.	64.0	4.0	86.0	0.0	.	.	.	.	Atlas-SNP
KCNMA1	3778	hgsc.bcm.edu	hg19	10	78669796	78669796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	KCNMA1_ENST00000406533,bladder,carcinoma,-2,1	KCNMA1	NM_001161352	exon25	c.A3075G	p.E1025E	GTACAGTTCTGTA	.	39.0	4.0	61.0	0.0	.	370	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91484863	91484863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF20B	NM_016195	exon15	c.A1949G	p.D650G	AATGTGACACTCG	.	74.0	4.0	104.0	0.0	.	191	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94268589	94268589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IDE	NM_004969	exon7	c.T956C	p.I319T	TCAGGTATGGGAA	.	85.0	4.0	105.0	0.0	.	77	.	.	Atlas-SNP
MYOF	26509	hgsc.bcm.edu	hg19	10	95109578	95109578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYOF	NM_013451	exon36	c.T4070C	p.L1357P	ATGAAGAGAACAG	.	83.0	4.0	147.0	0.0	.	177	.	.	Atlas-SNP
R3HCC1L	27291	hgsc.bcm.edu	hg19	10	99991351	99991351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	R3HCC1L	NM_001256619	exon7	c.T1910C	p.L637P	TTGACCTCAGTGA	.	75.0	5.0	124.0	0.0	.	3	.	.	Atlas-SNP
CCDC147	159686	hgsc.bcm.edu	hg19	10	106128250	106128250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC147	NM_001008723	exon6	c.A862G	p.N288D	CAAGAGAATGAAC	.	73.0	4.0	80.0	0.0	.	137	.	.	Atlas-SNP
CCDC147	159686	hgsc.bcm.edu	hg19	10	106160619	106160619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC147	NM_001008723	exon13	c.A1997G	p.K666R	GGGAAAAGGGGAT	.	87.0	4.0	80.0	0.0	.	137	.	.	Atlas-SNP
SHOC2	8036	hgsc.bcm.edu	hg19	10	112771425	112771425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHOC2	NM_007373	exon9	c.T1598C	p.L533P	ATAGCCTTCCCTT	.	82.0	4.0	99.0	0.0	.	49	.	.	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	hg19	10	127431772	127431772	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C10orf137	NM_001202438	exon18	c.A2517G	p.R839R	AAAGAGAATGGGT	.	84.0	4.0	99.0	0.0	.	153	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134732917	134732917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTC40	NM_001200049	exon15	c.T1760C	p.V587A	CGGGCCACTTTGG	.	77.0	4.0	105.0	0.0	.	100	.	.	Atlas-SNP
OR52B4	143496	hgsc.bcm.edu	hg19	11	4389188	4389188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR52B4	NM_001005161	exon1	c.A338G	p.E113G	CCTGACTCAGAGA	.	83.0	4.0	101.0	0.0	.	56	.	.	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	hg19	11	17522671	17522671	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USH1C	NM_153676	exon23	c.A2307G	p.E769E	ACCGCCTTCCAGG	.	79.0	4.0	86.0	0.0	.	157	.	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	hg19	11	20940817	20940817	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NELL1	NM_006157	exon7	c.T696C	p.D232D	CAGTGATTTCTTA	.	97.0	5.0	117.0	0.0	.	179	.	.	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26708028	26708028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC5A12	NM_178498	exon10	c.T1217C	p.V406A	ACCTGCACAACAC	.	76.0	4.0	82.0	0.0	.	134	.	.	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45203337	45203337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRDM11	NM_001256695	exon2	c.A20G	p.E7G	TGAAGGAGTGCTT	.	33.0	4.0	27.0	0.0	.	53	.	.	Atlas-SNP
CELF1	10658	hgsc.bcm.edu	hg19	11	47510436	47510436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CELF1	NM_001172639	exon4	c.A212G	p.E71G	TTGATTTCATACA	.	85.0	4.0	87.0	0.0	.	43	.	.	Atlas-SNP
OSBP	5007	hgsc.bcm.edu	hg19	11	59347665	59347665	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OSBP	NM_002556	exon11	c.T1860C	p.S620S	ATCCCGAGAGAAG	.	44.0	4.0	57.0	0.0	.	57	.	.	Atlas-SNP
MS4A14	84689	hgsc.bcm.edu	hg19	11	60184403	60184403	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MS4A14	NM_001261828	exon6	c.G2061A	p.W687X	ATTCTGGCAATTC	.	90.0	17.0	102.0	0.0	.	120	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62286551	62286551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AHNAK	NM_001620	exon5	c.T15338C	p.L5113P	CCCTCCAGTTTGG	.	96.0	4.0	127.0	0.0	.	532	.	.	Atlas-SNP
INTS5	80789	hgsc.bcm.edu	hg19	11	62417403	62417403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	INTS5	NM_030628	exon2	c.T149C	p.L50P	GCTGAGAGTTGGT	.	93.0	4.0	95.0	0.0	.	81	.	.	Atlas-SNP
SF1	7536	hgsc.bcm.edu	hg19	11	64534515	64534515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SF1	NM_001178030	exon12	c.C1814T	p.P605L	GGCGGCGGCGGCA	.	74.0	14.0	61.0	0.0	.	124	.	.	Atlas-SNP
PACS1	55690	hgsc.bcm.edu	hg19	11	66006669	66006669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PACS1	NM_018026	exon21	c.T2350C	p.S784P	CCACCCTCCAGCT	.	95.0	5.0	88.0	0.0	.	71	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66472881	66472881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTBN2	NM_006946	exon14	c.C1866G	p.S622R	CTCATAGCTCTGC	.	118.0	73.0	96.0	0.0	.	188	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78467981	78467981	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001098816	exon19	c.T2625C	p.P875P	GTCCAGAGGGTTA	.	98.0	4.0	100.0	0.0	.	.	.	.	Atlas-SNP
CCDC90B	60492	hgsc.bcm.edu	hg19	11	82984887	82984887	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC90B	NM_021825	exon6	c.A489G	p.R163R	ATCTGCTCTGATT	.	93.0	4.0	137.0	0.0	.	20	.	.	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	hg19	11	85420461	85420461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYTL2	NM_206927	exon7	c.A2927G	p.Y976C	TCCACATATTCAA	.	92.0	4.0	97.0	0.0	.	231	.	.	Atlas-SNP
KDM4D	55693	hgsc.bcm.edu	hg19	11	94731384	94731384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KDM4D	NM_018039	exon3	c.T848C	p.F283S	CTGGCTTCAACCA	.	85.0	5.0	107.0	0.0	.	58	.	.	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	hg19	11	102641564	102641564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MMP10	NM_002425	exon10	c.T1391C	p.V464A	TGTGTCACCATCC	.	96.0	4.0	88.0	0.0	.	44	.	.	Atlas-SNP
DDI1	414301	hgsc.bcm.edu	hg19	11	103908147	103908147	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	DDI1_ENST00000302259,colon,carcinoma,+2,2	DDI1	NM_001001711	exon1	c.T597C	p.R199R	GCTTCGTCTCTAC	.	64.0	3.0	68.0	0.0	.	222	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108138031	108138031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATM	NM_000051	exon17	c.G2600C	p.S867T	GTGTTAGTGATGC	.	68.0	31.0	124.0	0.0	.	1657	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117376187	117376187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	DSCAML1,NS,carcinoma,0,1	DSCAML1	NM_020693	exon9	c.C2224T	p.R742C	GCTGGCGCTCCCG	.	98.0	4.0	74.0	0.0	.	286	.	.	Atlas-SNP
NCAPD3	23310	hgsc.bcm.edu	hg19	11	134072727	134072727	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NCAPD3	NM_015261	exon13	c.A1599G	p.E533E	AACTGTTTCACCA	.	97.0	4.0	142.0	0.0	.	141	.	.	Atlas-SNP
TEAD4	7004	hgsc.bcm.edu	hg19	12	3128294	3128294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TEAD4	NM_003213	exon8	c.T541C	p.S181P	CCTTTCTCTCAGC	.	93.0	4.0	120.0	0.0	.	45	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9334596	9334596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PZP	NM_002864	exon14	c.A1664G	p.E555G	TCAATCTCAAATT	.	123.0	6.0	132.0	0.0	.	422	.	.	Atlas-SNP
EPS8	2059	hgsc.bcm.edu	hg19	12	15774278	15774278	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPS8	NM_004447	exon21	c.A2442G	p.E814E	AAAAGATTCCACT	.	67.0	6.0	64.0	0.0	.	70	.	.	Atlas-SNP
SLCO1B1	10599	hgsc.bcm.edu	hg19	12	21392086	21392086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1B1	NM_006446	exon15	c.T2039C	p.V680A	ATTTTGTCCCTTC	.	70.0	4.0	67.0	0.0	.	151	.	.	Atlas-SNP
SLCO1A2	6579	hgsc.bcm.edu	hg19	12	21453353	21453353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1A2	NM_134431	exon9	c.A839G	p.D280G	ATGATGTCAGCAT	.	44.0	4.0	64.0	0.0	.	107	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26568256	26568256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ITPR2	NM_002223	exon51	c.A7286G	p.K2429R	CGGTTTTTCAGCC	.	100.0	4.0	87.0	0.0	.	270	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32369322	32369322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon2	c.A355G	p.S119G	AAACAGAGCCGGG	.	116.0	5.0	127.0	0.0	.	89	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32520657	32520657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon9	c.A2818G	p.R940G	GCCGGGAGGCAAG	.	73.0	4.0	60.0	0.0	.	89	.	.	Atlas-SNP
RACGAP1	29127	hgsc.bcm.edu	hg19	12	50384062	50384062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RACGAP1	NM_013277	exon19	c.A1888G	p.M630V	TGAGCATTGGAGA	.	75.0	5.0	83.0	0.0	.	36	.	.	Atlas-SNP
OR10A7	121364	hgsc.bcm.edu	hg19	12	55614885	55614885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR10A7	NM_001005280	exon1	c.C77A	p.S26Y	AAGTTTCCCTCTT	.	176.0	82.0	263.0	1.0	.	53	.	.	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57905511	57905511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MARS	NM_004990	exon12	c.A1399G	p.R467G	TTGGGGAGGACAT	.	124.0	5.0	101.0	0.0	.	84	.	.	Atlas-SNP
LRIG3	121227	hgsc.bcm.edu	hg19	12	59274407	59274407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LRIG3	NM_153377	exon13	c.A1757G	p.H586R	CCAAAGTGATTGG	.	119.0	5.0	135.0	0.0	.	120	.	.	Atlas-SNP
LRIG3	121227	hgsc.bcm.edu	hg19	12	59276667	59276667	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	LRIG3,NS,carcinoma,0,1	LRIG3	NM_153377	exon12	c.A1464G	p.P488P	GCCATCTGGGCTA	.	72.0	3.0	69.0	0.0	.	120	.	.	Atlas-SNP
TMBIM4	51643	hgsc.bcm.edu	hg19	12	66531841	66531841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMBIM4	NM_016056	exon7	c.T616C	p.S206P	CAGGTGACAGTTT	.	81.0	4.0	114.0	0.0	.	47	.	.	Atlas-SNP
CPSF6	11052	hgsc.bcm.edu	hg19	12	69644987	69644987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CPSF6	NM_007007	exon2	c.C139T	p.P47S	GATGCCCCAGAAG	.	69.0	4.0	89.0	0.0	.	96	.	.	Atlas-SNP
CNOT2	4848	hgsc.bcm.edu	hg19	12	70724192	70724192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNOT2	NM_001199302	exon7	c.C512A	p.P171Q	GCTCGCCAAGCAT	.	126.0	70.0	199.0	0.0	.	53	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78388596	78388596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAV3	NM_014903	exon6	c.T685C	p.Y229H	GCCAGATATGCAA	.	56.0	4.0	89.0	0.0	.	506	.	.	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80191131	80191131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP1R12A	NM_002480	exon16	c.A2136G	p.G712G	ACTTCTTCCTATT	.	69.0	4.0	97.0	0.0	.	76	.	.	Atlas-SNP
VEZT	55591	hgsc.bcm.edu	hg19	12	95650962	95650962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VEZT	NM_017599	exon3	c.A205G	p.S69G	ATCAAAAGTTGGA	.	42.0	4.0	75.0	0.0	.	106	.	.	Atlas-SNP
IKBIP	121457	hgsc.bcm.edu	hg19	12	99007913	99007913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IKBIP	NM_201612	exon3	c.T503C	p.V168A	AGACCAACATCTT	.	79.0	4.0	101.0	0.0	.	46	.	.	Atlas-SNP
BCL7A	605	hgsc.bcm.edu	hg19	12	122492735	122492735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL7A	NM_020993	exon5	c.A464G	p.Q155R	ATTCACAGTCCTC	.	75.0	4.0	68.0	0.0	.	31	.	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	129189690	129189690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM132C	NM_001136103	exon9	c.A2177G	p.D726G	CCCTGGACATCTA	.	45.0	4.0	49.0	0.0	.	142	.	.	Atlas-SNP
RAN	5901	hgsc.bcm.edu	hg19	12	131359255	131359255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAN	NM_006325	exon5	c.T412C	p.F138L	ATTGTCTTCCACC	.	95.0	4.0	114.0	0.0	.	18	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23915617	23915617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	SACS,colon,carcinoma,0,1	SACS	NM_014363	exon10	c.A2398G	p.M800V	GTGGCATCTCATC	.	35.0	2.0	50.0	0.0	.	871	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25399863	25399863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNF17	NM_001184993	exon16	c.G2198A	p.C733Y	AAGCCTGTGTAGC	.	45.0	4.0	87.0	0.0	.	259	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32698997	32698997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRY	NM_023037	exon7	c.T701C	p.V234A	TTGGAGTGTTGGC	.	87.0	4.0	92.0	0.0	.	312	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35758164	35758164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NBEA	NM_015678	exon30	c.C4883A	p.A1628D	TCCTTGCCAAGTT	.	126.0	73.0	149.0	0.0	.	340	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41891035	41891035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAA16	NM_001110798	exon2	c.T108C	p.I36I	GATGATTCTGTCG	.	81.0	4.0	86.0	0.0	.	74	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42875524	42875524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AKAP11	NM_016248	exon8	c.A2642G	p.H881R	TGGTGCATACGAT	.	116.0	5.0	93.0	0.0	.	146	.	.	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	hg19	13	101890168	101890168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	NALCN,NS,carcinoma,0,1	NALCN	NM_052867	exon12	c.G1372A	p.V458I	CAATTACGAGTAG	.	41.0	2.0	75.0	0.0	.	431	.	.	Atlas-SNP
TPPP2	122664	hgsc.bcm.edu	hg19	14	21500171	21500171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	TPPP2,NS,carcinoma,0,1	TPPP2	NM_173846	exon4	c.A448G	p.T150A	GAGATGACTGACA	.	63.0	3.0	96.0	0.0	.	22	.	.	Atlas-SNP
PSME1	5720	hgsc.bcm.edu	hg19	14	24607958	24607958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSME1	NM_006263	exon11	c.A683G	p.D228G	TATATGACATCAT	.	69.0	4.0	83.0	0.0	.	18	.	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	hg19	14	24618770	24618770	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	RNF31,NS,carcinoma,-2,1	RNF31	NM_017999	exon6	c.C787T	p.Q263X	GTCCTGCAGGGTA	.	43.0	2.0	66.0	0.0	.	95	.	.	Atlas-SNP
KIAA0391	9692	hgsc.bcm.edu	hg19	14	35593210	35593210	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0391	NM_014672	exon2	c.A759G	p.G253G	CCAGGGAGCTCTC	.	68.0	4.0	95.0	0.0	.	35	.	.	Atlas-SNP
ATG14	22863	hgsc.bcm.edu	hg19	14	55836380	55836380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATG14	NM_014924	exon10	c.C1436A	p.A479D	ACCGAGGCTGCTG	.	93.0	4.0	115.0	0.0	.	36	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60070638	60070638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RTN1	NM_021136	exon6	c.T2114C	p.F705S	ACTGCAAACTGAA	.	43.0	4.0	41.0	0.0	.	139	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64519805	64519805	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYNE2	NM_182914	exon48	c.T9174C	p.I3058I	AGCTATTGATTTG	.	84.0	4.0	146.0	0.0	.	577	.	.	Atlas-SNP
ZBTB1	22890	hgsc.bcm.edu	hg19	14	64989571	64989571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZBTB1	NM_014950	exon2	c.G1349T	p.C450F	GTGCATGTGGTAA	.	62.0	44.0	88.0	0.0	.	93	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68248209	68248209	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFYVE26	NM_015346	exon22	c.T4410C	p.D1470D	AGATGCATCCTTC	.	49.0	4.0	68.0	0.0	.	223	.	.	Atlas-SNP
RGS6	9628	hgsc.bcm.edu	hg19	14	72945005	72945005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RGS6	NM_001204424	exon12	c.A822G	p.R274R	CGACAGACATTGT	.	61.0	4.0	95.0	0.0	.	92	.	.	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	hg19	14	89039002	89039002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZC3H14	NM_001160104	exon6	c.T512C	p.V171A	AAGATGTGATTGA	.	90.0	4.0	131.0	0.0	.	71	.	.	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	hg19	14	91770230	91770230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC88C	NM_001080414	exon20	c.C3450T	p.N1150N	GCTTTCGTTCTCC	.	76.0	5.0	104.0	0.0	.	192	.	.	Atlas-SNP
SLC24A4	123041	hgsc.bcm.edu	hg19	14	92790275	92790275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC24A4	NM_153647	exon2	c.G101A	p.C34Y	TGGTGTGCTGTGC	.	90.0	15.0	79.0	0.0	.	112	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94007149	94007149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC79	NM_020818	exon13	c.T965C	p.L322P	AGAGGCTGCTCAG	.	75.0	4.0	91.0	0.0	.	366	.	.	Atlas-SNP
EHD4	30844	hgsc.bcm.edu	hg19	15	42245961	42245961	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EHD4	NM_139265	exon3	c.413+1G>T	.	TCCTTACCGATTC	.	66.0	36.0	77.0	0.0	.	46	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49060502	49060502	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CEP152	NM_014985	exon15	c.A1932G	p.K644K	TCTCAGTTTTCCT	.	83.0	4.0	100.0	0.0	.	145	.	.	Atlas-SNP
FAM81A	145773	hgsc.bcm.edu	hg19	15	59801108	59801108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM81A	NM_152450	exon6	c.G590A	p.S197N	AGCAGAGCACCAA	.	567.0	149.0	583.0	0.0	.	31	.	.	Atlas-SNP
CLN6	54982	hgsc.bcm.edu	hg19	15	68500609	68500609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CLN6	NM_017882	exon7	c.A805G	p.T269A	AGAGGGTCAGTGC	.	113.0	6.0	121.0	0.0	.	16	.	.	Atlas-SNP
PAQR5	54852	hgsc.bcm.edu	hg19	15	69672244	69672244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAQR5	NM_001104554	exon4	c.T74C	p.L25P	GCATCCTGTTCGG	.	90.0	4.0	80.0	0.0	.	35	.	.	Atlas-SNP
RCCD1	91433	hgsc.bcm.edu	hg19	15	91500890	91500890	+	Missense_Mutation	SNP	A	A	G	rs75741610	bycluster	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RCCD1	NM_001017919	exon4	c.A614G	p.E205G	TGTTGGAGGCGTT	.	121.0	10.0	99.0	0.0	.	9	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93489406	93489406	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.G1337C	p.S446T	TCCACAGTAGGAA	.	186.0	68.0	276.0	1.0	.	280	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93489423	93489423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.A1354G	p.T452A	TCAAAAACCATCC	.	199.0	76.0	288.0	0.0	.	280	.	.	Atlas-SNP
MRPS34	65993	hgsc.bcm.edu	hg19	16	1822511	1822511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	MRPS34,bladder,carcinoma,0,1	MRPS34	NM_023936	exon3	c.A368G	p.K123R	TCAGTCTTCCCTG	.	65.0	3.0	89.0	0.0	.	7	.	.	Atlas-SNP
SHISA9	729993	hgsc.bcm.edu	hg19	16	13002438	13002438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHISA9	NM_001145205	exon2	c.A666G	p.X222W	AGTCTGAGTGCAC	.	96.0	4.0	84.0	0.0	.	33	.	.	Atlas-SNP
SPN	6693	hgsc.bcm.edu	hg19	16	29675097	29675097	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPN	NM_001030288	exon2	c.C48T	p.D16D	CCCAGACGCTCTG	.	100.0	4.0	105.0	0.0	.	44	.	.	Atlas-SNP
VPS35	55737	hgsc.bcm.edu	hg19	16	46708512	46708512	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS35	NM_018206	exon9	c.T975C	p.F325F	TATATCAAAAAGT	.	77.0	4.0	100.0	0.0	.	49	.	.	Atlas-SNP
HEATR3	55027	hgsc.bcm.edu	hg19	16	50136189	50136189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HEATR3	NM_182922	exon14	c.T1763C	p.L588P	TTCTGCTTGAAGT	.	79.0	4.0	100.0	0.0	.	59	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53513864	53513864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RBL2	NM_005611	exon19	c.A2842G	p.S948G	AGCAGAAGCCATC	.	98.0	4.0	141.0	0.0	.	115	.	.	Atlas-SNP
TSNAXIP1	55815	hgsc.bcm.edu	hg19	16	67859617	67859617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TSNAXIP1	NM_018430	exon8	c.A700G	p.T234A	AAGATGACCCGGC	.	80.0	4.0	74.0	0.0	.	66	.	.	Atlas-SNP
ABR	29	hgsc.bcm.edu	hg19	17	975915	975915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABR	NM_021962	exon8	c.T833C	p.L278P	CTGGACAGGAAGT	.	121.0	5.0	153.0	0.0	.	119	.	.	Atlas-SNP
PRPF8	10594	hgsc.bcm.edu	hg19	17	1585147	1585147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRPF8	NM_006445	exon5	c.T620C	p.F207S	TCATAGAACCAGT	.	89.0	4.0	127.0	0.0	.	169	.	.	Atlas-SNP
ZNF232	7775	hgsc.bcm.edu	hg19	17	5009459	5009459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	ZNF232,NS,carcinoma,0,1	ZNF232	NM_014519	exon5	c.A995G	p.K332R	CTACACTTATAGG	.	24.0	2.0	44.0	0.0	.	42	.	.	Atlas-SNP
SCIMP	388325	hgsc.bcm.edu	hg19	17	5124625	5124625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_207103	exon3	c.A166G	p.K56E	GGGGCTTGGCAAT	.	99.0	4.0	116.0	0.0	.	.	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	123.0	91.0	191.0	0.0	.	33396	.	.	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	15973762	15973762	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NCOR1	NM_001190440	exon30	c.T4278C	p.P1426P	TTTGCTAGGCCCC	.	85.0	4.0	143.0	0.0	.	240	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26946934	26946934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	KIAA0100,colon,carcinoma,0,1	KIAA0100	NM_014680	exon30	c.C5464T	p.R1822W	GCTGCCGCACAGC	.	82.0	4.0	69.0	0.0	.	175	.	.	Atlas-SNP
RFFL	117584	hgsc.bcm.edu	hg19	17	33339090	33339090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RFFL	NM_001017368	exon7	c.A989G	p.E330G	CCACACTCCAGAA	.	119.0	5.0	114.0	0.0	.	27	.	.	Atlas-SNP
NLE1	54475	hgsc.bcm.edu	hg19	17	33460235	33460235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NLE1	NM_018096	exon12	c.A1400G	p.D467G	TGGCCATCTGGAC	.	97.0	4.0	106.0	0.0	.	42	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35598870	35598870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACACA	NM_198834	exon23	c.A3031G	p.R1011G	ACTACCTCTGTAC	.	87.0	4.0	135.0	0.0	.	395	.	.	Atlas-SNP
MED1	5469	hgsc.bcm.edu	hg19	17	37566928	37566928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MED1	NM_004774	exon17	c.G1546A	p.E516K	TGGTTTCAGCTTT	.	130.0	6.0	181.0	0.0	.	123	.	.	Atlas-SNP
PSMD3	5709	hgsc.bcm.edu	hg19	17	38140566	38140566	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMD3	NM_002809	exon2	c.A240G	p.K80K	CGTGAAACAGCTA	.	99.0	4.0	99.0	0.0	.	56	.	.	Atlas-SNP
KLHL11	55175	hgsc.bcm.edu	hg19	17	40010298	40010298	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHL11	NM_018143	exon2	c.C1821T	p.Y607Y	ATCTTTGTAATAG	.	81.0	4.0	119.0	0.0	.	44	.	.	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	hg19	17	42168677	42168677	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HDAC5	NM_001015053	exon11	c.T1351C	p.L451L	CCAGCAACAGCAC	.	109.0	5.0	75.0	0.0	.	67	.	.	Atlas-SNP
UBTF	7343	hgsc.bcm.edu	hg19	17	42284734	42284734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBTF	NM_014233	exon21	c.A2171G	p.N724S	TCTTCATTCTGGG	.	104.0	5.0	121.0	0.0	.	65	.	.	Atlas-SNP
WNT9B	7484	hgsc.bcm.edu	hg19	17	44953863	44953863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WNT9B	NM_003396	exon4	c.G853T	p.E285X	TACATGGAGGACT	.	137.0	76.0	145.0	0.0	.	37	.	.	Atlas-SNP
IGF2BP1	10642	hgsc.bcm.edu	hg19	17	47103022	47103022	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IGF2BP1	NM_001160423	exon3	c.A279G	p.R93R	GCTCCGATGGGAA	.	99.0	4.0	100.0	0.0	.	80	.	.	Atlas-SNP
KAT7	11143	hgsc.bcm.edu	hg19	17	47874270	47874270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_007067	exon3	c.G322T	p.V108F	CAAGTGGTTGATT	.	121.0	99.0	146.0	0.0	.	.	.	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62290595	62290595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TEX2	NM_018469	exon2	c.T983C	p.L328P	TTGGAGAGTTCTG	.	100.0	4.0	88.0	0.0	.	89	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	67041411	67041411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABCA9	NM_080283	exon4	c.A371G	p.D124G	ACTGCGTCTATTG	.	87.0	4.0	103.0	0.0	.	192	.	.	Atlas-SNP
GPR142	350383	hgsc.bcm.edu	hg19	17	72368628	72368628	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GPR142	NM_181790	exon4	c.A1278G	p.R426R	TGTCCGACAGGTC	.	99.0	5.0	91.0	0.0	.	74	.	.	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	hg19	17	73751906	73751906	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ITGB4	NM_000213	exon35	c.T4683C	p.S1561S	CTACAGTGTGGAG	.	112.0	5.0	63.0	0.0	.	165	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76503588	76503588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH17	NM_173628	exon28	c.G4536C	p.Q1512H	CGGGAGCTGGGTG	.	151.0	30.0	129.0	0.0	.	347	.	.	Atlas-SNP
C17orf70	80233	hgsc.bcm.edu	hg19	17	79517603	79517603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C17orf70	NM_025161	exon3	c.A917G	p.D306G	TGCACATCCTCGT	.	118.0	5.0	116.0	0.0	.	79	.	.	Atlas-SNP
NDC80	10403	hgsc.bcm.edu	hg19	18	2578079	2578079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	NDC80,colon,carcinoma,0,1	NDC80	NM_006101	exon5	c.T415C	p.S139P	TGCCCCTCATACG	.	102.0	7.0	148.0	0.0	.	62	.	.	Atlas-SNP
SPIRE1	56907	hgsc.bcm.edu	hg19	18	12453092	12453092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPIRE1	NM_001128626	exon14	c.T1822C	p.S608P	TATAAGACCAAGT	.	59.0	4.0	111.0	0.0	.	120	.	.	Atlas-SNP
CEP192	55125	hgsc.bcm.edu	hg19	18	13103589	13103589	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	CEP192_ENST00000506447,NS,neuroblastoma,0,2	CEP192	NM_032142	exon39	c.6951+2T>C	.	TCAAGGTCAGTCA	.	69.0	4.0	89.0	0.0	.	340	.	.	Atlas-SNP
ELP2	55250	hgsc.bcm.edu	hg19	18	33709907	33709907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	ELP2_ENST00000350494,NS,carcinoma,0,2	ELP2	NM_001242879	exon1	c.C11T	p.P4L	TGGCACCCGTGCT	.	97.0	4.0	112.0	0.0	.	70	.	.	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33775247	33775247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	MOCOS,NS,carcinoma,0,1	MOCOS	NM_017947	exon2	c.C170A	p.A57D	CAGGTGCCACCTT	.	34.0	2.0	76.0	0.0	.	84	.	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	hg19	18	42533197	42533197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETBP1	NM_015559	exon4	c.A3892G	p.S1298G	AGTGGGAGTAAAA	.	54.0	4.0	82.0	0.0	.	577	.	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	hg19	18	44560140	44560140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TCEB3B	NM_016427	exon1	c.A1496G	p.E499G	GCTTCCTCCCGGA	.	113.0	5.0	169.0	0.0	.	141	.	.	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56246468	56246468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	ALPK2_ENST00000361673,colon,carcinoma,0,2	ALPK2	NM_052947	exon4	c.A1540G	p.T514A	CTGCCGTCTCCCA	.	66.0	3.0	115.0	0.0	.	487	.	.	Atlas-SNP
HMHA1	23526	hgsc.bcm.edu	hg19	19	1074826	1074826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HMHA1	NM_001258328	exon10	c.A1181G	p.E394G	AACACGAGAAGCG	.	73.0	4.0	38.0	0.0	.	78	.	.	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	hg19	19	1360617	1360617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MUM1	NM_032853	exon5	c.T700C	p.S234P	GGATCTTCCCTTT	.	88.0	4.0	80.0	0.0	.	54	.	.	Atlas-SNP
ARHGEF18	23370	hgsc.bcm.edu	hg19	19	7533871	7533871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARHGEF18	NM_001130955	exon17	c.T3077C	p.V1026A	GCGATGTGCCCAT	.	69.0	4.0	46.0	0.0	.	129	.	.	Atlas-SNP
KRI1	65095	hgsc.bcm.edu	hg19	19	10671691	10671691	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRI1	NM_023008	exon8	c.C669G	p.S223S	CTTCAGGGAATCT	.	110.0	26.0	93.0	0.0	.	65	.	.	Atlas-SNP
C19orf57	79173	hgsc.bcm.edu	hg19	19	14000257	14000257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C19orf57	NM_024323	exon6	c.A1412G	p.E471G	AACCCCTCGAGGT	.	91.0	4.0	78.0	0.0	.	34	.	.	Atlas-SNP
ZNF253	56242	hgsc.bcm.edu	hg19	19	20003478	20003478	+	Silent	SNP	T	T	C	rs377662376		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF253	NM_021047	exon4	c.T1422C	p.H474H	AATTCATATTGAA	.	57.0	4.0	59.0	0.0	.	99	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22155053	22155053	+	Missense_Mutation	SNP	C	C	A	rs373937489	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF208	NM_007153	exon4	c.G2783T	p.W928L	GACAACCAGCTGA	.	68.0	13.0	101.0	0.0	.	817	.	.	Atlas-SNP
GRAMD1A	57655	hgsc.bcm.edu	hg19	19	35514222	35514222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRAMD1A	NM_020895	exon18	c.T1936C	p.W646R	GAGTCCTGGCACA	.	96.0	4.0	119.0	0.0	.	39	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36258938	36258938	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.,11	C19orf55	NM_001039887	exon9	c.1190+1G>A	.	TGCCCAGGGCCGC	.	9.0	2.0	6.0	0.0	.	39	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36353409	36353409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIRREL2	NM_199180	exon12	c.G1525A	p.V509M	CCCACTGTGCGGA	.	74.0	4.0	50.0	0.0	.	170	.	.	Atlas-SNP
ZNF345	25850	hgsc.bcm.edu	hg19	19	37368330	37368330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF345	NM_001242476	exon4	c.A598G	p.K200E	GGTGAGAAACCTT	.	76.0	4.0	61.0	0.0	.	68	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38383676	38383676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WDR87	NM_031951	exon4	c.G2550C	p.M850I	AAGTCTCATTTCT	.	124.0	7.0	123.0	0.0	.	191	.	.	Atlas-SNP
AXL	558	hgsc.bcm.edu	hg19	19	41762508	41762508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AXL	NM_021913	exon18	c.A2188G	p.S730G	AGCAAGAGCGATG	.	122.0	5.0	112.0	0.0	.	126	.	.	Atlas-SNP
CCDC8	83987	hgsc.bcm.edu	hg19	19	46915065	46915065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC8	NM_032040	exon1	c.C1003G	p.Q335E	CCCTCTGATTATC	.	160.0	20.0	205.0	0.0	.	56	.	.	Atlas-SNP
PRKD2	25865	hgsc.bcm.edu	hg19	19	47207810	47207810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRKD2	NM_016457	exon4	c.G608C	p.S203T	TGGCCACTGGCCA	.	100.0	26.0	106.0	0.0	.	94	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47424967	47424967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_004491	exon1	c.T3035C	p.L1012P	CTAAGCTCTCTAT	.	123.0	5.0	113.0	0.0	.	.	.	.	Atlas-SNP
C5AR2	27202	hgsc.bcm.edu	hg19	19	47844736	47844736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001271750	exon2	c.C680A	p.A227E	GCTGGGCAGCCCG	.	38.0	16.0	27.0	0.0	.	.	.	.	Atlas-SNP
TBC1D17	79735	hgsc.bcm.edu	hg19	19	50381446	50381446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TBC1D17	NM_024682	exon2	c.A68G	p.K23R	CTAAGAAGTATCA	.	89.0	4.0	77.0	0.0	.	39	.	.	Atlas-SNP
SIGLEC7	27036	hgsc.bcm.edu	hg19	19	51649119	51649119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SIGLEC7	NM_014385	exon4	c.A768G	p.T256T	ATCCACAGCTCTG	.	61.0	4.0	72.0	0.0	.	74	.	.	Atlas-SNP
ZNF836	162962	hgsc.bcm.edu	hg19	19	52658668	52658668	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF836	NM_001102657	exon5	c.C2268T	p.G756G	GACCTGGCCACAT	.	64.0	4.0	96.0	0.0	.	158	.	.	Atlas-SNP
ZNF534	147658	hgsc.bcm.edu	hg19	19	52938454	52938454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF534	NM_001143939	exon3	c.T302C	p.V101A	AAGGTGTGAACAC	.	92.0	4.0	108.0	0.0	.	105	.	.	Atlas-SNP
CACNG8	59283	hgsc.bcm.edu	hg19	19	54485412	54485412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CACNG8	NM_031895	exon4	c.A587G	p.K196R	AGGAGAAGAAAAA	.	106.0	5.0	82.0	0.0	.	29	.	.	Atlas-SNP
ZNF17	7565	hgsc.bcm.edu	hg19	19	57932584	57932584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF17	NM_006959	exon3	c.T1724C	p.V575A	AAAAAGTTCACAC	.	79.0	4.0	100.0	0.0	.	49	.	.	Atlas-SNP
ZNF549	256051	hgsc.bcm.edu	hg19	19	58048846	58048846	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF549	NM_001199295	exon4	c.A474G	p.K158K	AGAGAAACACATC	.	100.0	5.0	117.0	0.0	.	118	.	.	Atlas-SNP
UBOX5	22888	hgsc.bcm.edu	hg19	20	3102976	3102976	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBOX5	NM_014948	exon3	c.C309T	p.G103G	AGCTGGGCCCAGG	.	102.0	47.0	114.0	0.0	.	47	.	.	Atlas-SNP
OVOL2	58495	hgsc.bcm.edu	hg19	20	18022310	18022310	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OVOL2	NM_021220	exon3	c.G379C	p.G127R	GGAAGCCCTTGCC	.	142.0	6.0	157.0	0.0	.	18	.	.	Atlas-SNP
NINL	22981	hgsc.bcm.edu	hg19	20	25442240	25442240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NINL	NM_025176	exon21	c.T3614C	p.L1205P	CATTCAAGTTCAA	.	94.0	4.0	98.0	0.0	.	148	.	.	Atlas-SNP
ASXL1	171023	hgsc.bcm.edu	hg19	20	31021502	31021502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASXL1	NM_015338	exon11	c.T1501C	p.S501P	CGTGCCTCTGCAT	.	138.0	6.0	97.0	0.0	.	1114	.	.	Atlas-SNP
SPINT3	10816	hgsc.bcm.edu	hg19	20	44144183	44144183	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPINT3	NM_006652	exon1	c.A66G	p.E22E	TGCTAGTTCTGAT	.	107.0	5.0	100.0	0.0	.	12	.	.	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44586259	44586259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF335	NM_022095	exon17	c.G2408C	p.S803T	TGAGCACTCATGT	.	93.0	4.0	89.0	0.0	.	115	.	.	Atlas-SNP
SPATA2	9825	hgsc.bcm.edu	hg19	20	48524814	48524814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPATA2	NM_006038	exon2	c.A214G	p.S72G	AGGAGCTCTCCAC	.	116.0	5.0	73.0	0.0	.	36	.	.	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49214133	49214133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM65C	NM_080829	exon14	c.G1762T	p.G588C	GGGAGCCCCCAAA	.	140.0	18.0	109.0	0.0	.	87	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58442784	58442784	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYCP2	NM_014258	exon38	c.A4107G	p.E1369E	CTTAAATTCTGAA	.	100.0	4.0	111.0	0.0	.	204	.	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	hg19	20	60318825	60318825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH4	NM_001794	exon3	c.T376C	p.S126P	ACCTCGTCCCCGC	.	97.0	4.0	77.0	0.0	.	172	.	.	Atlas-SNP
KCNJ6	3763	hgsc.bcm.edu	hg19	21	38997717	38997717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNJ6	NM_002240	exon4	c.T1016C	p.V339A	GTCAGGACAGGTG	.	80.0	4.0	114.0	0.0	.	58	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40590495	40590495	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BRWD1	NM_018963	exon30	c.T3474C	p.G1158G	TTTCTGACCCCAT	.	86.0	5.0	92.0	0.0	.	325	.	.	Atlas-SNP
LCA5L	150082	hgsc.bcm.edu	hg19	21	40782216	40782216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LCA5L	NM_152505	exon8	c.T1138C	p.S380P	CATCTGATTTTTG	.	100.0	4.0	135.0	0.0	.	57	.	.	Atlas-SNP
UBASH3A	53347	hgsc.bcm.edu	hg19	21	43829672	43829672	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	UBASH3A,NS,carcinoma,0,1	UBASH3A	NM_018961	exon3	c.A309G	p.R103R	GAACAGAGCTCAT	.	41.0	2.0	77.0	0.0	.	72	.	.	Atlas-SNP
MRPL40	64976	hgsc.bcm.edu	hg19	22	19422404	19422404	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MRPL40	NM_003776	exon3	c.T283C	p.L95L	AAGTTCTTGGATA	.	54.0	4.0	62.0	0.0	.	13	.	.	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	hg19	22	25263061	25263061	+	Missense_Mutation	SNP	G	G	A	rs375323027	bycluster	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SGSM1	NM_001098497	exon10	c.G928A	p.V310I	TCCAGCGTCTACT	.	116.0	8.0	86.0	0.0	.	150	.	.	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36696312	36696312	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYH9	NM_002473	exon24	c.2839-2A>G	.	AGCTCCTGCCGGG	.	60.0	4.0	52.0	0.0	.	225	.	.	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	hg19	22	45802675	45802675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMC1B	NM_148674	exon3	c.A370G	p.I124V	TGCCTATCTTTTC	.	95.0	4.0	83.0	0.0	.	215	.	.	Atlas-SNP
STS	412	hgsc.bcm.edu	hg19	X	7177588	7177588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STS	NM_000351	exon5	c.C596T	p.T199I	TCCTTACCCTTGC	.	99.0	4.0	101.0	0.0	.	64	.	.	Atlas-SNP
FANCB	2187	hgsc.bcm.edu	hg19	X	14868753	14868753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FANCB	NM_152633	exon6	c.T1370C	p.V457A	ATATGGACAGAAT	.	81.0	4.0	70.0	0.0	.	78	.	.	Atlas-SNP
CA5B	11238	hgsc.bcm.edu	hg19	X	15768152	15768152	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CA5B	NM_007220	exon2	c.G6A	p.V2V	GATGGTGGTGATG	.	85.0	4.0	65.0	0.0	.	23	.	.	Atlas-SNP
PDHA1	5160	hgsc.bcm.edu	hg19	X	19368150	19368150	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDHA1	NM_001173454	exon4	c.A327G	p.V109V	GACTGTACGCCGA	.	114.0	5.0	114.0	0.0	.	85	.	.	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23411680	23411680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCHD1	NM_173495	exon3	c.T2045C	p.F682S	TCGTCTTCAATCC	.	80.0	4.0	90.0	0.0	.	213	.	.	Atlas-SNP
SYTL5	94122	hgsc.bcm.edu	hg19	X	37913595	37913595	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYTL5	NM_001163334	exon2	c.T249C	p.A83A	TCAGGCTTGCTCA	.	67.0	4.0	45.0	0.0	.	72	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50351123	50351123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHROOM4	NM_020717	exon6	c.A3019G	p.N1007D	CTGGGTTCTCAAG	.	99.0	5.0	102.0	0.0	.	171	.	.	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53115034	53115034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TSPYL2	NM_022117	exon6	c.T1460C	p.V487A	ATGAGGTCCCCAA	.	101.0	5.0	87.0	0.0	.	53	.	.	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83389804	83389804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RPS6KA6	NM_014496	exon8	c.A632G	p.H211R	TTGATATGTCCTA	.	52.0	4.0	58.0	0.0	.	116	.	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	hg19	X	101970641	101970641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GPRASP2	NM_138437	exon4	c.T844C	p.S282P	TCCTGGTCTGGAT	.	100.0	4.0	95.0	0.0	.	89	.	.	Atlas-SNP
TMEM164	84187	hgsc.bcm.edu	hg19	X	109247199	109247199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM164	NM_032227	exon2	c.A197G	p.E66G	CGAAGGAGGACGG	.	120.0	5.0	114.0	0.0	.	59	.	.	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	hg19	X	110439078	110439078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAK3	NM_001128168	exon13	c.A1227T	p.Q409H	CCTGCAAGCTTTG	.	58.0	49.0	46.0	0.0	.	179	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122551504	122551504	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GRIA3	NM_000828	exon11	c.A1752G	p.E584E	CTTGGAAGACAAC	.	97.0	4.0	103.0	0.0	.	386	.	.	Atlas-SNP
ARHGAP36	158763	hgsc.bcm.edu	hg19	X	130222734	130222734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARHGAP36	NM_144967	exon12	c.C1619T	p.T540I	CCAAAACTGGCGT	.	88.0	4.0	79.0	0.0	.	171	.	.	Atlas-SNP
RPL10	6134	hgsc.bcm.edu	hg19	X	153629200	153629200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RPL10	NM_001256577	exon6	c.T487C	p.F163L	GAGGGCTTCCAAT	.	100.0	5.0	82.0	0.0	.	22	.	.	Atlas-SNP
LATS1	9113	hgsc.bcm.edu	hg19	6	150001056	150001058	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LATS1	NM_004690	exon5	c.2547_2549del	p.849_850del	.	.	150.0	116.0	208.0	0.0	.	241	.	.	Atlas-Indel,Pindel
OPN4	94233	hgsc.bcm.edu	hg19	10	88421086	88421086	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.1046delT	p.I349fs	.	.	93.0	34.0	111.0	0.0	.	61	.	.	Atlas-INDEL
TRAK1	22906	hgsc.bcm.edu	hg19	3	42234621	42234660	+	Frame_Shift_Del	DEL	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TRAK1	NM_001042646	exon8	c.823_862del	p.275_288del	.	.	84.0	12.0	162.0	0.0	.	188	.	.	Pindel
OPN4	94233	hgsc.bcm.edu	hg19	10	88421086	88421087	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.1046_1047del	p.349_349del	.	.	96.0	24.0	112.0	0.0	.	61	.	.	Pindel
