Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7797423	7797423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CAMTA1	NM_015215	exon15	c.G3451A	p.A1151T	GGAATTGCCAGGT	.	60.0	25.0	61.0	0.0	.	226	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16259330	16259330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SPEN	NM_015001	exon11	c.G6595T	p.A2199S	GGCCTTGCCCCAG	.	86.0	28.0	96.0	0.0	.	374	.	.	Atlas-SNP
ALG6	29929	hgsc.bcm.edu	hg19	1	63876884	63876884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ALG6	NM_013339	exon8	c.C562A	p.L188I	GACCTCCTAGGGT	.	173.0	10.0	191.0	0.0	.	33	.	.	Atlas-SNP
LRRIQ3	127255	hgsc.bcm.edu	hg19	1	74649130	74649130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LRRIQ3	NM_001105659	exon2	c.A239C	p.H80P	TTTCCATGGAGAT	.	144.0	36.0	168.0	0.0	.	146	.	.	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	hg19	1	102302451	102302451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	OLFM3_ENST00000338858,NS,carcinoma,0,2	OLFM3	NM_058170	exon2	c.G200T	p.R67L	AGTTGGCGAAGTT	.	83.0	23.0	97.0	0.0	.	178	.	.	Atlas-SNP
PRMT6	55170	hgsc.bcm.edu	hg19	1	107600118	107600118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PRMT6	NM_018137	exon1	c.G781T	p.A261S	TCCCGCGCCGGCT	.	27.0	15.0	22.0	0.0	.	55	.	.	Atlas-SNP
CAPZA1	829	hgsc.bcm.edu	hg19	1	113192075	113192075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CAPZA1	NM_006135	exon3	c.A139T	p.R47W	CTCCTCAGGGAAG	.	93.0	25.0	104.0	0.0	.	16	.	.	Atlas-SNP
LCE5A	254910	hgsc.bcm.edu	hg19	1	152484032	152484032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	LCE5A,NS,carcinoma,0,1	LCE5A	NM_178438	exon2	c.C22A	p.Q8K	AGCCAGCAGCAGT	.	114.0	14.0	52.0	0.0	.	15	.	.	Atlas-SNP
RAB25	57111	hgsc.bcm.edu	hg19	1	156035802	156035802	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	RAB25	NM_020387	exon2	c.G144A	p.E48E	GGTTGAGTTCTCC	.	94.0	4.0	44.0	0.0	.	18	.	.	Atlas-SNP
ETV3	2117	hgsc.bcm.edu	hg19	1	157095349	157095349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ETV3	NM_001145312	exon5	c.T823C	p.S275P	TATAGGAGAAGAT	.	219.0	85.0	102.0	0.0	.	50	.	.	Atlas-SNP
CD55	1604	hgsc.bcm.edu	hg19	1	207510136	207510136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CD55	NM_001114752	exon7	c.A952C	p.T318P	ACCACCACAAAAA	.	158.0	81.0	104.0	0.0	.	55	.	.	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29296015	29296015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C2orf71	NM_001029883	exon1	c.G1113T	p.W371C	AAGGTCCCAGCTG	.	103.0	42.0	99.0	0.0	.	146	.	.	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32463205	32463205	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NLRC4	NM_001199138	exon6	c.C2517T	p.I839I	ACCTAGGATTTTC	.	87.0	20.0	88.0	0.0	.	165	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32640007	32640007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	BIRC6	NM_016252	exon10	c.G1648T	p.E550X	AAGAGTGAAAAGA	.	98.0	5.0	101.0	0.0	.	838	.	.	Atlas-SNP
KIAA1211L	343990	hgsc.bcm.edu	hg19	2	99449388	99449388	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	C2orf55,NS,carcinoma,0,1	.	NM_207362	exon4	c.C312T	p.D104D	AGTAGCGTCCTGT	.	53.0	9.0	56.0	0.0	.	.	.	.	Atlas-SNP
UBXN4	23190	hgsc.bcm.edu	hg19	2	136513213	136513213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	UBXN4,NS,carcinoma,0,1	UBXN4	NM_014607	exon5	c.C460T	p.L154F	GCAGAGCTTTGTG	.	31.0	12.0	32.0	0.0	.	54	.	.	Atlas-SNP
PSMD14	10213	hgsc.bcm.edu	hg19	2	162227718	162227718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PSMD14	NM_005805	exon7	c.C347G	p.P116R	GTCACCCTGGCTT	.	263.0	55.0	261.0	0.0	.	22	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210835632	210835632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	UNC80	NM_032504	exon53	c.C8009A	p.P2670H	CACCACCTCTGCC	.	254.0	47.0	240.0	0.0	.	280	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211471635	211471635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	CPS1_ENST00000430249,colon,carcinoma,0,2	CPS1	NM_001122633	exon19	c.G2180T	p.R727L	TGTCCCGAAGCTC	.	107.0	45.0	118.0	0.0	.	485	.	.	Atlas-SNP
C2orf57	165100	hgsc.bcm.edu	hg19	2	232458647	232458647	+	Missense_Mutation	SNP	C	C	A	rs375509340	alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C2orf57	NM_152614	exon1	c.C985A	p.R329S	AGCTTGCGCTCGG	.	42.0	11.0	39.0	0.0	.	35	.	.	Atlas-SNP
NEU2	4759	hgsc.bcm.edu	hg19	2	233899496	233899496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NEU2	NM_005383	exon2	c.A872T	p.Q291L	CAGCCCAGTGGCT	.	36.0	12.0	67.0	0.0	.	42	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	hg19	3	10128833	10128833	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FANCD2	NM_001018115	exon34	c.C3351T	p.Y1117Y	CCATTACTTGCAG	.	152.0	44.0	134.0	0.0	.	253	.	.	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69097137	69097137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TMF1	NM_007114	exon2	c.A719G	p.N240S	GGTGTATTGCTCT	.	135.0	44.0	121.0	0.0	.	77	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108156479	108156479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MYH15	NM_014981	exon26	c.A3203C	p.E1068A	TTGCCCTCCAGTT	.	123.0	38.0	125.0	0.0	.	223	.	.	Atlas-SNP
ACPP	55	hgsc.bcm.edu	hg19	3	132061394	132061394	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ACPP	NM_001099	exon6	c.556-2A>C	.	TGTTTCAGGATTT	.	76.0	18.0	84.0	0.0	.	118	.	.	Atlas-SNP
CLCN2	1181	hgsc.bcm.edu	hg19	3	184070097	184070097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CLCN2	NM_004366	exon21	c.A2294G	p.E765G	CTCATCTCGCCTT	.	82.0	23.0	77.0	0.0	.	74	.	.	Atlas-SNP
NAAA	27163	hgsc.bcm.edu	hg19	4	76857288	76857288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NAAA	NM_014435	exon3	c.G472T	p.D158Y	GCACATCCACTGT	.	66.0	10.0	63.0	0.0	.	26	.	.	Atlas-SNP
TSLP	85480	hgsc.bcm.edu	hg19	5	110409217	110409217	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TSLP	NM_033035	exon3	c.C225T	p.C75C	ACATTGCCTTACT	.	136.0	18.0	98.0	0.0	.	22	.	.	Atlas-SNP
TSSK1B	83942	hgsc.bcm.edu	hg19	5	112769739	112769739	+	Silent	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TSSK1B	NM_032028	exon1	c.C798A	p.I266I	GCTGAGGATCTCG	.	62.0	14.0	44.0	0.0	.	89	.	.	Atlas-SNP
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140778538	140778538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	.	NM_018925	exon1	c.T844C	p.Y282H	TCCTTCTACAGAA	.	89.0	23.0	59.0	0.0	.	.	.	.	Atlas-SNP
GPRIN1	114787	hgsc.bcm.edu	hg19	5	176026296	176026296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GPRIN1	NM_052899	exon2	c.G540A	p.M180I	TGTAAACATGGGA	.	134.0	12.0	103.0	0.0	.	77	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43250675	43250675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TTBK1	NM_032538	exon14	c.G2197T	p.E733X	GGGAAGGAGGAAG	.	66.0	25.0	56.0	0.0	.	124	.	.	Atlas-SNP
SLC16A10	117247	hgsc.bcm.edu	hg19	6	111540208	111540208	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SLC16A10	NM_018593	exon5	c.C1278T	p.F426F	CGGATTCATGTCT	.	195.0	82.0	195.0	0.0	.	33	.	.	Atlas-SNP
IL20RA	53832	hgsc.bcm.edu	hg19	6	137323486	137323486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	IL20RA	NM_014432	exon7	c.A871G	p.I291V	CATAAATCAAAAT	.	73.0	20.0	71.0	0.0	.	54	.	.	Atlas-SNP
EIF4H	7458	hgsc.bcm.edu	hg19	7	73609125	73609125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EIF4H	NM_022170	exon6	c.G524T	p.R175L	ACCGGCGAACAGG	.	63.0	16.0	72.0	0.0	.	19	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77551943	77551943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PHTF2	NM_001127359	exon9	c.A865G	p.T289A	TAGGATACCCAAA	.	60.0	17.0	86.0	0.0	.	104	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88963648	88963648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZNF804B	NM_181646	exon4	c.G1352T	p.G451V	AGGATGGCCACAC	.	98.0	28.0	98.0	0.0	.	322	.	.	Atlas-SNP
GNB2	2783	hgsc.bcm.edu	hg19	7	100275413	100275413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GNB2	NM_005273	exon7	c.A469G	p.I157V	AACCAAATCATCA	.	56.0	16.0	46.0	0.0	.	29	.	.	Atlas-SNP
NDUFA5	4698	hgsc.bcm.edu	hg19	7	123197496	123197496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	NDUFA5,bladder,carcinoma,0,1	NDUFA5	NM_005000	exon2	c.G28T	p.G10C	CAAGGCCAGTGGT	.	103.0	38.0	96.0	0.0	.	6	.	.	Atlas-SNP
POT1	25913	hgsc.bcm.edu	hg19	7	124475442	124475442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	POT1	NM_015450	exon15	c.C1396T	p.L466F	TCGAGAGTTTGCA	.	85.0	15.0	84.0	0.0	.	186	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131925877	131925877	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PLXNA4	NM_020911	exon5	c.G1552T	p.E518X	GGCACTCGCCGCA	.	75.0	31.0	77.0	0.0	.	873	.	.	Atlas-SNP
TAS2R38	5726	hgsc.bcm.edu	hg19	7	141673256	141673256	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TAS2R38	NM_176817	exon1	c.T234C	p.L78L	GTGGGTAAGCTGG	.	69.0	28.0	73.0	0.0	.	51	.	.	Atlas-SNP
NOBOX	135935	hgsc.bcm.edu	hg19	7	144096113	144096113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NOBOX	NM_001080413	exon8	c.C1399A	p.P467T	GCAGTGGCATCAG	.	92.0	26.0	130.0	0.0	.	130	.	.	Atlas-SNP
INSIG1	3638	hgsc.bcm.edu	hg19	7	155093275	155093275	+	Splice_Site	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	INSIG1	NM_005542	exon3	c.413-1G>C	.	AAAACAGCTGTTG	.	66.0	21.0	99.0	0.0	.	20	.	.	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105361460	105361460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	.	NM_001257317	exon2	c.C680A	p.T227N	TTGGCACTGGCCT	.	97.0	14.0	47.0	0.0	.	.	.	.	Atlas-SNP
SUSD3	203328	hgsc.bcm.edu	hg19	9	95846880	95846880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SUSD3	NM_145006	exon5	c.G619A	p.G207R	GACCCTGGGATCC	.	36.0	9.0	43.0	0.0	.	32	.	.	Atlas-SNP
SURF4	6836	hgsc.bcm.edu	hg19	9	136234218	136234218	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SURF4	NM_033161	exon2	c.A152T	p.Q51L	TCGCGCTGCTCGC	.	38.0	8.0	38.0	0.0	.	20	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137630606	137630606	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	COL5A1	NM_000093	exon11	c.T1446C	p.P482P	CGGACCTCCAGGA	.	62.0	18.0	76.0	0.0	.	323	.	.	Atlas-SNP
STAM	8027	hgsc.bcm.edu	hg19	10	17730065	17730065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	STAM	NM_003473	exon5	c.G337A	p.V113I	CTTATGGTTGAAT	.	81.0	33.0	104.0	0.0	.	60	.	.	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29818698	29818698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SVIL	NM_021738	exon12	c.C2182T	p.R728C	GACGGCGTAGCCT	.	59.0	11.0	58.0	0.0	.	226	.	.	Atlas-SNP
CPN1	1369	hgsc.bcm.edu	hg19	10	101825001	101825001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	CPN1,neck,malignant_melanoma,0,1	CPN1	NM_001308	exon4	c.C703T	p.R235X	CCCCTCGGACCCG	.	33.0	8.0	47.0	0.0	.	62	.	.	Atlas-SNP
TCF7L2	6934	hgsc.bcm.edu	hg19	10	114910795	114910795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TCF7L2	NM_001146283	exon9	c.A986T	p.H329L	CGCTACACACGAC	.	84.0	19.0	104.0	0.0	.	298	.	.	Atlas-SNP
ACCS	84680	hgsc.bcm.edu	hg19	11	44096174	44096174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ACCS	NM_032592	exon5	c.A432C	p.E144D	GGAGGAAGTGGCC	.	45.0	13.0	54.0	0.0	.	64	.	.	Atlas-SNP
C11orf80	79703	hgsc.bcm.edu	hg19	11	66568539	66568539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	C11orf80	NM_024650	exon8	c.A811G	p.I271V	AATGGAATTGCTC	.	91.0	16.0	86.0	0.0	.	31	.	.	Atlas-SNP
FOLR2	2350	hgsc.bcm.edu	hg19	11	71932083	71932083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FOLR2	NM_001113535	exon3	c.T320A	p.L107Q	CCAACCTGGGGCC	.	60.0	24.0	64.0	0.0	.	29	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	121036027	121036027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	TECTA,NS,carcinoma,0,1	TECTA	NM_005422	exon16	c.G5318T	p.R1773L	CCAACCGAACTTG	.	203.0	40.0	208.0	0.0	.	329	.	.	Atlas-SNP
OR10G7	390265	hgsc.bcm.edu	hg19	11	123909699	123909699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	OR10G7	NM_001004463	exon1	c.G10A	p.A4T	GGGTGGCGTTGGA	.	133.0	49.0	178.0	0.0	.	103	.	.	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30789975	30789975	+	Missense_Mutation	SNP	C	C	A	rs61751231	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	IPO8	NM_006390	exon22	c.G2636T	p.R879I	AGTTGTCTAGTAG	.	71.0	7.0	97.0	0.0	.	105	.	C|0.992;T|0.008	Atlas-SNP
NACA	4666	hgsc.bcm.edu	hg19	12	57113603	57113603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NACA	NM_001113203	exon3	c.C1711A	p.P571T	AAGAAGGGGAATT	.	117.0	11.0	128.0	0.0	.	131	.	.	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	hg19	12	105519876	105519876	+	Nonsense_Mutation	SNP	C	C	G	rs190039477	bycluster;by1000genomes;alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	KIAA1033	NM_015275	exon11	c.C881G	p.S294X	TTCGGTCAATTTT	.	113.0	38.0	159.0	0.0	.	83	.	C|1.000;T|0.000	Atlas-SNP
LAMP1	3916	hgsc.bcm.edu	hg19	13	113960890	113960890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LAMP1	NM_005561	exon2	c.C152T	p.S51L	CCTTCTCAGTGAA	.	83.0	48.0	78.0	0.0	.	41	.	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	hg19	14	81251620	81251620	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CEP128	NM_152446	exon14	c.T1830G	p.A610A	CAAGTGAGCTTTC	.	143.0	16.0	193.0	0.0	.	146	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33936690	33936690	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	RYR3	NM_001243996	exon28	c.C3735A	p.V1245V	GTTTGTCAACGTG	.	105.0	44.0	77.0	0.0	.	760	.	.	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	hg19	15	40660976	40660976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	DISP2	NM_033510	exon8	c.A2663T	p.Q888L	GCACCCAGGACCT	.	40.0	12.0	45.0	0.0	.	86	.	.	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43815176	43815176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MAP1A	NM_002373	exon4	c.C1505T	p.P502L	CTGAGCCCCAGAC	.	118.0	40.0	116.0	0.0	.	189	.	.	Atlas-SNP
GCOM1	145781	hgsc.bcm.edu	hg19	15	57953696	57953696	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	GCOM1	NM_001018090	exon11	c.C1168G	p.Q390E	ATACTGCAGCTTT	.	157.0	38.0	135.0	0.0	.	66	.	.	Atlas-SNP
MYO1E	4643	hgsc.bcm.edu	hg19	15	59502718	59502718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MYO1E	NM_004998	exon13	c.A1357C	p.K453Q	CCACTTTGTTCTC	.	97.0	32.0	119.0	0.0	.	99	.	.	Atlas-SNP
CLPX	10845	hgsc.bcm.edu	hg19	15	65443162	65443162	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CLPX	NM_006660	exon14	c.A1901G	p.X634X	ACAGTTTAGCTGT	.	33.0	11.0	57.0	0.0	.	49	.	.	Atlas-SNP
NEIL1	79661	hgsc.bcm.edu	hg19	15	75641492	75641492	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NEIL1	NM_001256552	exon2	c.C504T	p.S168S	CATGTCCGGCTCT	.	15.0	5.0	17.0	0.0	.	36	.	.	Atlas-SNP
LINS	55180	hgsc.bcm.edu	hg19	15	101112222	101112222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LINS	NM_001040616	exon6	c.A1271T	p.H424L	TGAAGATGAGGCT	.	38.0	9.0	43.0	0.0	.	62	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2158258	2158258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PKD1	NM_000296	exon15	c.A6910G	p.T2304A	CCTGTGTCGAAGC	.	21.0	8.0	28.0	0.0	.	184	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89352532	89352532	+	Silent	SNP	C	C	T	rs149525788	alternate_allele	TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ANKRD11	NM_001256183	exon8	c.G807A	p.T269T	CAGCGGCGTCTCG	.	22.0	10.0	32.0	0.0	.	195	.	C|1.000;G|0.000	Atlas-SNP
PSMB6	5694	hgsc.bcm.edu	hg19	17	4701710	4701710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PSMB6	NM_002798	exon6	c.C713A	p.P238H	TACCACCCGCCTG	.	37.0	14.0	57.0	0.0	.	20	.	.	Atlas-SNP
EIF5A	1984	hgsc.bcm.edu	hg19	17	7213030	7213030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	EIF5A_ENST00000336452,NS,carcinoma,0,3	EIF5A	NM_001143760	exon2	c.C166T	p.R56C	GCATTACGTAAGA	.	26.0	17.0	52.0	0.0	.	28	.	.	Atlas-SNP
COX10	1352	hgsc.bcm.edu	hg19	17	13980195	13980195	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	COX10	NM_001303	exon3	c.A321G	p.L107L	CAGCCTATCTTTG	.	102.0	44.0	147.0	0.0	.	36	.	.	Atlas-SNP
DGKE	8526	hgsc.bcm.edu	hg19	17	54925299	54925299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	DGKE	NM_003647	exon5	c.A761G	p.K254R	TAACTAAAACTCC	.	52.0	12.0	52.0	0.0	.	47	.	.	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57758348	57758348	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CLTC	NM_004859	exon19	c.G2995C	p.D999H	ACTGCAGACCTTC	.	136.0	43.0	134.0	0.0	.	124	.	.	Atlas-SNP
TANC2	26115	hgsc.bcm.edu	hg19	17	61476233	61476233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	TANC2	NM_025185	exon17	c.C3067T	p.R1023X	GTAGAGCGAGCAC	.	136.0	43.0	126.0	0.0	.	266	.	.	Atlas-SNP
AFMID	125061	hgsc.bcm.edu	hg19	17	76183502	76183502	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	AFMID	NM_001145526	exon1	c.G51A	p.K17K	GAAGAAGATGTCT	.	47.0	20.0	49.0	0.0	.	38	.	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	hg19	18	2891529	2891529	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EMILIN2	NM_032048	exon4	c.C1404T	p.C468C	ACATTGCTTTTAC	.	99.0	42.0	89.0	0.0	.	97	.	.	Atlas-SNP
RANBP3	8498	hgsc.bcm.edu	hg19	19	5931460	5931460	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	RANBP3	NM_007322	exon8	c.A648G	p.A216A	TCTCCATGCAGCA	.	39.0	19.0	66.0	0.0	.	36	.	.	Atlas-SNP
PKN1	5585	hgsc.bcm.edu	hg19	19	14574553	14574553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PKN1	NM_213560	exon10	c.A1512C	p.Q504H	GCAGCAAGGTGAG	.	97.0	32.0	94.0	0.0	.	99	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15300099	15300099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	NOTCH3	NM_000435	exon7	c.G1177C	p.D393H	ACTCGTCCACATC	.	33.0	12.0	39.0	0.0	.	340	.	.	Atlas-SNP
ZNF98	148198	hgsc.bcm.edu	hg19	19	22575694	22575694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZNF98	NM_001098626	exon4	c.T343A	p.C115S	GTCCACATTTTTT	.	284.0	105.0	323.0	1.0	.	230	.	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	hg19	19	38633246	38633246	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	SIPA1L3	NM_015073	exon12	c.A3429G	p.V1143V	CACAGTATCACCA	.	27.0	7.0	32.0	0.0	.	150	.	.	Atlas-SNP
PRMT1	3276	hgsc.bcm.edu	hg19	19	50187272	50187272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	PRMT1	NM_001536	exon6	c.C501A	p.C167X	CTACTGCCTCTTC	.	87.0	22.0	90.0	0.0	.	31	.	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18374289	18374289	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	MICAL3	NM_015241	exon12	c.C1656G	p.A552A	ACAAAGGGCCAAG	.	170.0	56.0	169.0	0.0	.	53	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40662452	40662452	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	TNRC6B_ENST00000454349,NS,carcinoma,0,1	TNRC6B	NM_001162501	exon5	c.C2218T	p.Q740X	CCCAATCAAGGAT	.	112.0	54.0	49.0	0.0	.	195	.	.	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	hg19	X	153224782	153224782	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	HCFC1	NM_005334	exon9	c.G1605T	p.T535T	CCTCACCGTTCCC	.	43.0	26.0	45.0	0.0	.	284	.	.	Atlas-SNP
FAM65B	9750	hgsc.bcm.edu	hg19	6	24847845	24847845	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	FAM65B	NM_014722	exon13	c.1153delA	p.K385fs	.	.	36.0	14.0	38.0	0.0	.	134	.	.	Atlas-INDEL
ROBO1	6091	hgsc.bcm.edu	hg19	3	79639035	79639036	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ROBO1	NM_002941	exon2	c.27_28insT	p.L9fs	.	.	97.0	12.0	84.0	0.0	.	833	.	.	Atlas-INDEL
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77766040	77766041	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	ZFHX4	NM_024721	exon10	c.6883_6884insA	p.E2295fs	.	.	139.0	67.0	94.0	0.0	.	878	.	.	Atlas-INDEL
BCKDK	10295	hgsc.bcm.edu	hg19	16	31121012	31121012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	BCKDK	NM_005881	exon4	c.282delG	p.L94fs	.	.	77.0	24.0	80.0	0.0	.	52	.	.	Atlas-Indel,Pindel
CYB5A	1528	hgsc.bcm.edu	hg19	18	71959015	71959027	+	Frame_Shift_Del	DEL	GTGGTGCAGGATC	GTGGTGCAGGATC	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	GTGGTGCAGGATC	GTGGTGCAGGATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	CYB5A	NM_001914	exon1	c.85_97del	p.29_33del	.	.	61.0	13.0	52.0	0.0	.	9	.	.	Atlas-Indel,Pindel
LMCD1	29995	hgsc.bcm.edu	hg19	3	8574486	8574524	+	In_Frame_Del	DEL	TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG	TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG	TCGGGCTTCGAGCCACATTCATGGAGGTAACAGATTTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	LMCD1	NM_014583	exon2	c.105_131del	p.35_44del	.	.	82.0	14.0	153.0	0.0	.	38	.	.	Atlas-Indel,Pindel
EIF3E	3646	hgsc.bcm.edu	hg19	8	109229677	109229726	+	Frame_Shift_Del	DEL	TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC	TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC	-	novel		TCGA-CC-A3MC-01A-11D-A22F-10	TCGA-CC-A3MC-10A-01D-A22F-10	TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC	TGCATTAAGATATCTAAGAAAAAATATAAAAGTTATTTAATAACTTACCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	53285fbd-271b-4966-99a6-be108d4ca51c	b6adfc43-1baa-4942-bf7d-41745f3c0f90	.	EIF3E	NM_001568	exon8	c.723_736del	p.241_246del	.	.	19.0	15.0	12.0	0.0	.	73	.	.	Pindel
