Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SCNN1D	6339	hgsc.bcm.edu	hg19	1	1223365	1223365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCNN1D	NM_001130413	exon12	c.G1610T	p.G537V	CCGCCGGCGGGGA	.	105.0	52.0	150.0	0.0	.	60	.	.	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	hg19	1	3328344	3328344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRDM16	NM_022114	exon9	c.T1583A	p.L528Q	CGCCTCTGCTACC	.	27.0	10.0	50.0	0.0	.	147	.	.	Atlas-SNP
KIF1B	23095	hgsc.bcm.edu	hg19	1	10384901	10384901	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF1B	NM_015074	exon24	c.A2485C	p.T829P	ACTGTGACTGGCA	.	83.0	35.0	78.0	0.0	.	242	.	.	Atlas-SNP
PLA2G2F	64600	hgsc.bcm.edu	hg19	1	20474788	20474788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLA2G2F	NM_022819	exon5	c.T530A	p.L177H	GCTTCCTCAATGT	.	193.0	81.0	310.0	1.0	.	28	.	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27107029	27107029	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARID1A	NM_006015	exon20	c.A6640T	p.S2214C	CAGGCCAGCCTCC	.	90.0	38.0	124.0	0.0	.	842	.	.	Atlas-SNP
MAP3K6	9064	hgsc.bcm.edu	hg19	1	27684710	27684710	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP3K6	NM_004672	exon21	c.G2877A	p.P959P	GCGCTTCGGGGGG	.	96.0	43.0	128.0	0.0	.	134	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34038176	34038176	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	CSMD2_ENST00000373381,colon,carcinoma,0,2	CSMD2	NM_052896	exon51	c.C7698T	p.G2566G	CTCAGCGCCTGCC	.	87.0	35.0	107.0	0.0	.	946	.	.	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	hg19	1	38287832	38287832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MTF1	NM_005955	exon9	c.A1728C	p.L576F	ACCATTTAATATC	.	163.0	78.0	233.0	0.0	.	67	.	.	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	hg19	1	43055011	43055011	+	Missense_Mutation	SNP	G	G	A	rs145632548		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	CCDC30,NS,carcinoma,0,1	CCDC30	NM_001080850	exon9	c.G1240A	p.V414I	CAGAACGTAGATG	.	46.0	18.0	67.0	0.0	.	78	.	G|1.000;A|0.000	Atlas-SNP
LRIG2	9860	hgsc.bcm.edu	hg19	1	113655151	113655151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRIG2	NM_014813	exon14	c.G1849T	p.A617S	ACTGGTGCCATGG	.	79.0	17.0	123.0	0.0	.	67	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144854658	144854658	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PDE4DIP	NM_001198834	exon43	c.6814-2A>T	.	TCTCCCTGGATAA	.	145.0	9.0	126.0	0.0	.	817	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367800	145367800	+	Missense_Mutation	SNP	G	G	A	rs201525063	bycluster	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	NBPF10,rectum,carcinoma,0,2	NBPF10	NM_001039703	exon83	c.G10396A	p.D3466N	GAAGAAGATCAAA	.	6.0	3.0	1.0	0.0	.	221	.	.	Atlas-SNP
RNF115	27246	hgsc.bcm.edu	hg19	1	145688137	145688137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RNF115	NM_014455	exon9	c.A832T	p.T278S	GACTCTACTCGGC	.	242.0	61.0	166.0	0.0	.	27	.	.	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	hg19	1	152732782	152732782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KPRP	NM_001025231	exon2	c.T718A	p.Y240N	GGCTCCTATGGGA	.	146.0	35.0	80.0	0.0	.	152	.	.	Atlas-SNP
LCE1B	353132	hgsc.bcm.edu	hg19	1	152785001	152785001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LCE1B	NM_178349	exon1	c.C79G	p.P27A	CTCACCCCTAGAT	.	367.0	174.0	245.0	1.0	.	45	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155449286	155449286	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASH1L	NM_018489	exon3	c.A3375T	p.A1125A	AAAACCTGCATCA	.	186.0	52.0	142.0	0.0	.	279	.	.	Atlas-SNP
HAPLN2	60484	hgsc.bcm.edu	hg19	1	156594457	156594457	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HAPLN2	NM_021817	exon6	c.T621A	p.P207P	CTACCCTGTGCTC	.	30.0	7.0	31.0	0.0	.	20	.	.	Atlas-SNP
CRABP2	1382	hgsc.bcm.edu	hg19	1	156670823	156670823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CRABP2	NM_001199723	exon3	c.A92T	p.K31M	GCAATCTTCCTCA	.	116.0	31.0	77.0	0.0	.	13	.	.	Atlas-SNP
FCRL1	115350	hgsc.bcm.edu	hg19	1	157767574	157767574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FCRL1	NM_001159397	exon8	c.A1034T	p.Q345L	TGCTGTTGTCTGC	.	202.0	33.0	125.0	0.0	.	164	.	.	Atlas-SNP
NUF2	83540	hgsc.bcm.edu	hg19	1	163295880	163295880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUF2	NM_145697	exon2	c.G39C	p.E13D	AGCTGAGATTGTG	.	93.0	18.0	58.0	0.0	.	138	.	.	Atlas-SNP
TEX35	84066	hgsc.bcm.edu	hg19	1	178490806	178490806	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TEX35	NM_001170723	exon9	c.587-1G>T	.	AACCTAGCGCAGC	.	189.0	38.0	149.0	0.0	.	15	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196197434	196197434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KCNT2	NM_198503	exon28	c.C3328G	p.L1110V	TTGGAAGGTAGGC	.	87.0	17.0	60.0	0.0	.	243	.	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201060850	201060850	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CACNA1S	NM_000069	exon5	c.C612T	p.L204L	CATAAAGAGGACC	.	220.0	32.0	211.0	0.0	.	249	.	.	Atlas-SNP
MFSD4	148808	hgsc.bcm.edu	hg19	1	205553249	205553249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD4	NM_181644	exon4	c.T857A	p.L286Q	CACACCTAGGTAG	.	46.0	12.0	54.0	0.0	.	46	.	.	Atlas-SNP
PRSS38	339501	hgsc.bcm.edu	hg19	1	228003457	228003457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PRSS38	NM_183062	exon1	c.T40A	p.S14T	GGGCCCTCTGCCC	.	129.0	43.0	131.0	0.0	.	55	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228563447	228563447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	OBSCN_ENST00000570156,NS,carcinoma,0,2	OBSCN	NM_001271223	exon109	c.G25579A	p.A8527T	GTGTACGCGGATG	.	171.0	41.0	184.0	0.0	.	2142	.	.	Atlas-SNP
ITSN2	50618	hgsc.bcm.edu	hg19	2	24438936	24438936	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITSN2	NM_006277	exon32	c.T3972C	p.D1324D	TTTGAAATCTGTG	.	87.0	16.0	60.0	0.0	.	224	.	.	Atlas-SNP
DTNB	1838	hgsc.bcm.edu	hg19	2	25705696	25705696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DTNB	NM_021907	exon10	c.A1048G	p.M350V	AGGACATGTGGCT	.	111.0	76.0	96.0	0.0	.	43	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73678026	73678026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ALMS1	NM_015120	exon8	c.G4369T	p.A1457S	TCAGTTGCTCCTG	.	124.0	75.0	91.0	0.0	.	384	.	.	Atlas-SNP
SULT1C4	27233	hgsc.bcm.edu	hg19	2	108999919	108999919	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SULT1C4	NM_006588	exon5	c.A568T	p.K190X	GAAGCCAAAGACA	.	93.0	55.0	82.0	0.0	.	41	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152539201	152539201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEB	NM_004543	exon29	c.A2918T	p.K973M	GCTCGCTTTGCCT	.	109.0	31.0	77.0	0.0	.	1697	.	.	Atlas-SNP
IFIH1	64135	hgsc.bcm.edu	hg19	2	163124064	163124064	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IFIH1	NM_022168	exon15	c.A2823G	p.V941V	TTCTCTTACAATG	.	34.0	15.0	43.0	0.0	.	102	.	.	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	hg19	2	191301292	191301292	+	Silent	SNP	G	G	A	rs115585862	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MFSD6	NM_017694	exon3	c.G537A	p.L179L	TATCCTGCCAACA	.	93.0	32.0	86.0	0.0	.	58	.	G|0.996;T|0.004	Atlas-SNP
RFTN2	130132	hgsc.bcm.edu	hg19	2	198508920	198508920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RFTN2	NM_144629	exon3	c.G400A	p.A134T	TTTGTGCCTCAGA	.	130.0	73.0	104.0	0.0	.	68	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212812232	212812232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERBB4	NM_001042599	exon3	c.A344T	p.Y115F	AAGGCATATCGAT	.	94.0	58.0	97.0	0.0	.	480	.	.	Atlas-SNP
SEPT2	4735	hgsc.bcm.edu	hg19	2	242283230	242283230	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SEPT2	NM_001008491	exon10	c.A760T	p.R254X	AAGGTCAGAGGCC	.	162.0	44.0	123.0	0.0	.	33	.	.	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	hg19	3	383657	383657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHL1	NM_001253388	exon5	c.G571T	p.A191S	TACTTCGCAAACG	.	340.0	174.0	229.0	0.0	.	242	.	.	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	hg19	3	13670761	13670761	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001004019	exon13	c.T2811C	p.F937F	CGGCTTTCAGCGG	.	107.0	60.0	112.0	0.0	.	137	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	bycluster	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	CTNNB1,gallbladder,other,0,359	CTNNB1	NM_001098209	exon3	c.C98A	p.S33Y	TGGACTCTGGAAT	.	145.0	44.0	139.0	0.0	.	4904	.	.	Atlas-SNP
KIF15	56992	hgsc.bcm.edu	hg19	3	44879894	44879894	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF15	NM_020242	exon27	c.T3299A	p.I1100N	CCCTGATTCAGGA	.	150.0	86.0	155.0	0.0	.	103	.	.	Atlas-SNP
CCR1	1230	hgsc.bcm.edu	hg19	3	46244963	46244963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCR1	NM_001295	exon2	c.T842A	p.L281Q	ACAGCCAGGTCCA	.	131.0	77.0	114.0	0.0	.	36	.	.	Atlas-SNP
P4HTM	54681	hgsc.bcm.edu	hg19	3	49042389	49042389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HTM	NM_177938	exon6	c.A983T	p.H328L	ATGCCCACGTGGA	.	102.0	58.0	110.0	0.0	.	71	.	.	Atlas-SNP
ITIH4	3700	hgsc.bcm.edu	hg19	3	52848087	52848087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ITIH4	NM_002218	exon23	c.G2627T	p.G876V	AACTGGCCTGAGA	.	99.0	27.0	111.0	0.0	.	74	.	.	Atlas-SNP
B3GALNT1	8706	hgsc.bcm.edu	hg19	3	160803895	160803895	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	B3GALNT1	NM_001038628	exon8	c.A648T	p.R216S	AAATCCTCTATAG	.	26.0	5.0	28.0	0.0	.	34	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	hg19	3	166960387	166960387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	ZBBX_ENST00000455345,colon,carcinoma,0,2	ZBBX	NM_001199201	exon21	c.G2299A	p.D767N	TGAAATCTGGGAA	.	48.0	16.0	29.0	0.0	.	299	.	.	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184039550	184039550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF4G1	NM_001194946	exon11	c.C1199G	p.P400R	CTGTGCCCATTGC	.	155.0	96.0	195.0	0.0	.	151	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195513058	195513058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MUC4	NM_018406	exon2	c.T5393A	p.V1798D	GAGGAAACGTCGG	.	1861.0	369.0	1820.0	1.0	.	1505	.	.	Atlas-SNP
LDB2	9079	hgsc.bcm.edu	hg19	4	16510279	16510279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	LDB2_ENST00000441778,NS,carcinoma,0,1	LDB2	NM_001290	exon7	c.G770A	p.R257Q	TTTCTCCGTTTGG	.	108.0	52.0	97.0	0.0	.	129	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48529665	48529665	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRYL	NM_015030	exon53	c.A7146G	p.V2382V	AGAAAATACAACC	.	50.0	27.0	41.0	0.0	.	242	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55593652	55593652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	KIT,colon,carcinoma,0,5	KIT	NM_000222	exon11	c.C1718A	p.P573Q	TAGACCCAACACA	.	138.0	77.0	91.0	0.0	.	7396	.	.	Atlas-SNP
MAPK10	5602	hgsc.bcm.edu	hg19	4	86989078	86989078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAPK10	NM_002753	exon10	c.A833T	p.Q278L	CCTAGTTGTTCAA	.	92.0	67.0	100.0	0.0	.	106	.	.	Atlas-SNP
NEIL3	55247	hgsc.bcm.edu	hg19	4	178231110	178231110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon1	c.G3C	p.M1I	AGAGATGGTGGAA	.	264.0	15.0	273.0	0.0	.	89	.	.	Atlas-SNP
NEIL3	55247	hgsc.bcm.edu	hg19	4	178256896	178256896	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NEIL3	NM_018248	exon3	c.T333C	p.Y111Y	TAAATATAAAAAT	.	91.0	79.0	108.0	0.0	.	89	.	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1053526	1053526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC12A7	NM_006598	exon23	c.A3098G	p.D1033G	TGCGCATCCTGGG	.	211.0	36.0	164.0	0.0	.	97	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13830159	13830159	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DNAH5	NM_001369	exon37	c.T6225A	p.P2075P	AAATTCAGGGTTC	.	233.0	44.0	163.0	0.0	.	868	.	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	hg19	5	15928539	15928539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBXL7	NM_012304	exon3	c.A668T	p.Y223F	GCTGTTACAATAT	.	246.0	53.0	153.0	0.0	.	138	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16704767	16704767	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYO10	NM_012334	exon22	c.A2197T	p.K733X	CCAGTTTCTGTTC	.	64.0	16.0	58.0	0.0	.	198	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71494849	71494849	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MAP1B	NM_005909	exon5	c.T5667C	p.Y1889Y	TGACTATGAGTCT	.	48.0	27.0	54.0	0.0	.	243	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82834673	82834673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	VCAN	NM_004385	exon8	c.G5851A	p.E1951K	GCAAAAGAAGAAA	.	56.0	14.0	66.0	0.0	.	498	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89971058	89971058	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR98	NM_032119	exon24	c.5111-2A>T	.	TCCACTAGGCTTG	.	59.0	23.0	82.0	0.0	.	605	.	.	Atlas-SNP
TCF7	6932	hgsc.bcm.edu	hg19	5	133480499	133480499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TCF7	NM_201634	exon9	c.C742T	p.P248S	GGCTCGCCTAAGA	.	107.0	38.0	218.0	0.0	.	81	.	.	Atlas-SNP
PITX1	5307	hgsc.bcm.edu	hg19	5	134364795	134364795	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PITX1	NM_002653	exon3	c.C619G	p.P207A	ACAGCGGGCTCAT	.	122.0	46.0	193.0	0.0	.	31	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139189340	139189340	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSD2	NM_032289	exon2	c.A315T	p.A105A	GCTGGCAGAGGGG	.	59.0	32.0	90.0	0.0	.	88	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139909162	139909162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ANKHD1	NM_017747	exon29	c.A6631T	p.N2211Y	CTTTTCAATCACT	.	93.0	41.0	123.0	0.0	.	233	.	.	Atlas-SNP
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140308516	140308516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PCDHAC1	NM_031882	exon1	c.A2039T	p.Q680L	CTGCCCAGAACTT	.	52.0	24.0	79.0	0.0	.	141	.	.	Atlas-SNP
HMGXB3	22993	hgsc.bcm.edu	hg19	5	149431544	149431544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HMGXB3	NM_014983	exon20	c.A3668T	p.D1223V	CCTTCGACAATGC	.	68.0	28.0	88.0	0.0	.	31	.	.	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	hg19	5	150663626	150663626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC36A3	NM_001145017	exon9	c.C1076A	p.T359N	TTGAGGGTGATGC	.	111.0	49.0	145.0	0.0	.	54	.	.	Atlas-SNP
MGAT1	4245	hgsc.bcm.edu	hg19	5	180218676	180218676	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAT1	NM_001114617	exon3	c.G1296A	p.A432A	TGGGGGCGCCAGG	.	213.0	96.0	282.0	0.0	.	48	.	.	Atlas-SNP
ABHD16A	7920	hgsc.bcm.edu	hg19	6	31660873	31660873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABHD16A	NM_021160	exon7	c.A557T	p.E186V	AGGGGCTCTGGGC	.	69.0	53.0	80.0	0.0	.	34	.	.	Atlas-SNP
PSMB9	5698	hgsc.bcm.edu	hg19	6	32826201	32826201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PSMB9	NM_002800	exon5	c.A451T	p.S151C	TCCGGCAGCACCT	.	75.0	31.0	94.0	0.0	.	16	.	.	Atlas-SNP
DEF6	50619	hgsc.bcm.edu	hg19	6	35280290	35280290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	DEF6	NM_022047	exon4	c.A635T	p.E212V	ACCAGGAGCTCAT	.	93.0	76.0	167.0	0.0	.	36	.	.	Atlas-SNP
NCR2	9436	hgsc.bcm.edu	hg19	6	41309647	41309647	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCR2	NM_004828	exon3	c.T510C	p.S170S	TCCATCTACCATC	.	63.0	50.0	106.0	0.0	.	44	.	.	Atlas-SNP
FRK	2444	hgsc.bcm.edu	hg19	6	116277657	116277657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FRK	NM_002031	exon5	c.A916T	p.T306S	ACTCTGTAATAAT	.	31.0	12.0	63.0	0.0	.	78	.	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143092423	143092423	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HIVEP2	NM_006734	exon5	c.G3453T	p.L1151L	CAGGTGCAGTGGC	.	91.0	35.0	88.0	0.0	.	225	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155569180	155569180	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TIAM2	NM_012454	exon19	c.C3699T	p.P1233P	GAACCCCACCAAG	.	83.0	69.0	125.0	0.0	.	161	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2984108	2984108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CARD11	NM_032415	exon5	c.A422T	p.Q141L	TTCATCTGCTGCT	.	79.0	33.0	102.0	0.0	.	339	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4188918	4188918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon30	c.T4448A	p.L1483H	GAGAGCTCCTGGT	.	54.0	16.0	75.0	0.0	.	361	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4201422	4201422	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SDK1	NM_152744	exon32	c.A4734T	p.P1578P	AGTTCCAGGAGAG	.	90.0	39.0	134.0	0.0	.	361	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20698148	20698148	+	Missense_Mutation	SNP	G	G	T	rs199505251	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon14	c.G1556T	p.G519V	TGGTAGGGGAAAA	.	25.0	11.0	55.0	0.0	.	357	.	G|0.999;A|0.001	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20762841	20762841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCB5	NM_001163941	exon21	c.A2624T	p.K875M	CTGGAAAGGTAAA	.	44.0	6.0	77.0	0.0	.	357	.	.	Atlas-SNP
TBX20	57057	hgsc.bcm.edu	hg19	7	35293206	35293206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TBX20	NM_001077653	exon1	c.C26A	p.P9H	AGTTGGGGCTTGG	.	29.0	12.0	46.0	0.0	.	96	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42088201	42088201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GLI3	NM_000168	exon5	c.T568A	p.F190I	GGCTGAAGGGAGA	.	167.0	55.0	240.0	0.0	.	312	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53103631	53103631	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	POM121L12,NS,carcinoma,0,1	POM121L12	NM_182595	exon1	c.G267A	p.P89P	CAAGCCGCAGCGG	.	29.0	15.0	22.0	1.0	.	146	.	.	Atlas-SNP
ASNS	440	hgsc.bcm.edu	hg19	7	97484710	97484710	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASNS	NM_133436	exon9	c.A1092T	p.G364G	TCCTTCTCCAGAG	.	45.0	13.0	32.0	0.0	.	97	.	.	Atlas-SNP
LMOD2	442721	hgsc.bcm.edu	hg19	7	123302237	123302237	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LMOD2	NM_207163	exon2	c.T597A	p.I199I	AGTGATTGAGGAC	.	85.0	38.0	97.0	0.0	.	62	.	.	Atlas-SNP
LEP	3952	hgsc.bcm.edu	hg19	7	127894794	127894794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LEP	NM_000230	exon3	c.T482A	p.L161Q	GGCAGCTGGACCT	.	25.0	13.0	40.0	0.0	.	17	.	.	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	hg19	7	135095305	135095305	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CNOT4	NM_001190850	exon7	c.A781T	p.K261X	TATTTTTATCAAC	.	63.0	30.0	78.0	0.0	.	146	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141765270	141765270	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MGAM	NM_004668	exon38	c.4618+2T>A	.	CATTGGTGCGTGG	.	64.0	37.0	90.0	0.0	.	767	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149529876	149529876	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_198455	exon109	c.A15290T	p.Q5097L	AGAGCCAGTGTGA	.	40.0	17.0	86.0	0.0	.	.	.	.	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	hg19	7	158672638	158672638	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	WDR60	NM_018051	exon5	c.A837G	p.K279K	TAGAAAAGAGAAA	.	189.0	72.0	213.0	0.0	.	94	.	.	Atlas-SNP
LZTS1	11178	hgsc.bcm.edu	hg19	8	20112615	20112615	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LZTS1	NM_021020	exon1	c.C78T	p.R26R	GGACTTGCGCAGC	.	105.0	27.0	99.0	0.0	.	72	.	.	Atlas-SNP
C8orf58	541565	hgsc.bcm.edu	hg19	8	22458397	22458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C8orf58	NM_001013842	exon2	c.G43T	p.G15W	GCAGATGGGGCTG	.	64.0	42.0	76.0	0.0	.	17	.	.	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	hg19	8	35542098	35542098	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC5D	NM_080872	exon6	c.752-2A>T	.	TCTCTCAGTGAAT	.	85.0	16.0	109.0	0.0	.	393	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61765635	61765635	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHD7	NM_017780	exon31	c.C6351T	p.L2117L	CATCCTCAATGAC	.	182.0	50.0	176.0	0.0	.	534	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116599393	116599393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRPS1	NM_014112	exon5	c.T2535G	p.N845K	CTCCACATTGGGA	.	117.0	20.0	51.0	0.0	.	516	.	.	Atlas-SNP
LRRC6	23639	hgsc.bcm.edu	hg19	8	133595953	133595953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC6	NM_012472	exon11	c.A1214T	p.Q405L	TTTGTTTGTTCTC	.	289.0	44.0	95.0	0.0	.	58	.	.	Atlas-SNP
PUF60	22827	hgsc.bcm.edu	hg19	8	144899155	144899155	+	Silent	SNP	G	G	A	rs372944670		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PUF60	NM_078480	exon11	c.C1305T	p.S435S	CTGCTCGCTCAGC	.	128.0	10.0	111.0	0.0	.	26	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144943295	144943295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EPPK1	NM_031308	exon1	c.A4127T	p.Q1376L	GCCGCCTGGGGCA	.	100.0	41.0	51.0	0.0	.	199	.	.	Atlas-SNP
SLC39A4	55630	hgsc.bcm.edu	hg19	8	145640635	145640635	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC39A4	NM_130849	exon3	c.A643T	p.S215C	CCTCGCTGCTGTG	.	273.0	34.0	161.0	0.0	.	54	.	.	Atlas-SNP
SLC24A2	25769	hgsc.bcm.edu	hg19	9	19786418	19786418	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SLC24A2	NM_001193288	exon1	c.A447T	p.L149F	AATGGCTAAGGCT	.	33.0	27.0	31.0	0.0	.	93	.	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	hg19	9	82333727	82333727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TLE4	NM_007005	exon15	c.T1431A	p.H477Q	CCGGCATGCTCGC	.	156.0	36.0	168.0	0.0	.	187	.	.	Atlas-SNP
SPATA31C1	441452	hgsc.bcm.edu	hg19	9	90535600	90535600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001145124	exon4	c.G778C	p.D260H	CCACTGGACACCG	.	191.0	50.0	167.0	0.0	.	.	.	.	Atlas-SNP
TMEM245	23731	hgsc.bcm.edu	hg19	9	111853343	111853343	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_032012	exon5	c.A1009T	p.R337X	TTCGTCTGCCCAG	.	90.0	57.0	66.0	0.0	.	.	.	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114500592	114500592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C9orf84	NM_173521	exon10	c.T1193A	p.I398K	AAAAATATCTCAA	.	63.0	29.0	43.0	0.0	.	207	.	.	Atlas-SNP
HDHD3	81932	hgsc.bcm.edu	hg19	9	116135994	116135994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HDHD3	NM_031219	exon2	c.C641T	p.P214L	GCCTGTGGGCCAA	.	105.0	64.0	90.0	0.0	.	10	.	.	Atlas-SNP
NCS1	23413	hgsc.bcm.edu	hg19	9	132980139	132980139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCS1	NM_014286	exon3	c.A118T	p.S40C	TGCCCCAGTGGGC	.	139.0	39.0	123.0	0.0	.	18	.	.	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134525525	134525525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RAPGEF1	NM_198679	exon3	c.A309C	p.Q103H	CTGCCTTTGAGAC	.	89.0	67.0	95.0	0.0	.	126	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16877186	16877186	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CUBN	NM_001081	exon64	c.A10189T	p.R3397X	AGTCTCTGTTGCA	.	242.0	68.0	80.0	0.0	.	515	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25701321	25701321	+	Silent	SNP	T	T	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GPR158	NM_020752	exon4	c.T1254G	p.L418L	ACGACTTGCCATC	.	296.0	82.0	115.0	0.0	.	255	.	.	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89712017	89712017	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	PTEN,NS,carcinoma,0,4	PTEN	NM_000314	exon6	c.634+1G>T	.	CTTGCAGTAAGTG	.	16.0	12.0	39.0	0.0	.	3652	.	.	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	hg19	11	4661967	4661967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR51D1	NM_001004751	exon1	c.T947A	p.L316H	GGGTCCTCTGTAT	.	100.0	25.0	67.0	0.0	.	49	.	.	Atlas-SNP
EIF3F	8665	hgsc.bcm.edu	hg19	11	8017529	8017529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	EIF3F	NM_003754	exon8	c.A1034T	p.Q345L	TCACACAGTCACA	.	62.0	16.0	57.0	0.0	.	23	.	.	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	hg19	11	40137322	40137322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRC4C	NM_001258419	exon7	c.T521C	p.L174S	CGGCGCAAAGAAG	.	76.0	18.0	52.0	0.0	.	190	.	.	Atlas-SNP
OR8K5	219453	hgsc.bcm.edu	hg19	11	55926911	55926911	+	Nonsense_Mutation	SNP	C	C	A	rs376114385	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR8K5	NM_001004058	exon1	c.G883T	p.E295X	CCTCTTCGTTTCT	.	39.0	13.0	81.0	0.0	.	82	.	.	Atlas-SNP
OR4D9	390199	hgsc.bcm.edu	hg19	11	59283045	59283045	+	Silent	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	OR4D9	NM_001004711	exon1	c.C660A	p.V220V	CACGGTCATCTTG	.	78.0	36.0	94.0	0.0	.	47	.	.	Atlas-SNP
IL18BP	10068	hgsc.bcm.edu	hg19	11	71712350	71712350	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IL18BP	NM_001145057	exon4	c.A339G	p.R113R	AGGCCGACTGTGG	.	85.0	36.0	108.0	0.0	.	15	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108114838	108114838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ATM	NM_000051	exon6	c.T655A	p.C219S	ATTCAGTGTGCGA	.	39.0	14.0	54.0	0.0	.	1657	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118347664	118347664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MLL	NM_001197104	exon4	c.C3301T	p.R1101X	GAAGAACGAGAAA	.	121.0	44.0	151.0	0.0	.	548	.	.	Atlas-SNP
CHEK1	1111	hgsc.bcm.edu	hg19	11	125514071	125514071	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHEK1	NM_001244846	exon10	c.A1009T	p.K337X	ATTGATAAATTGG	.	77.0	39.0	66.0	0.0	.	44	.	.	Atlas-SNP
KLRC4	8302	hgsc.bcm.edu	hg19	12	10561527	10561527	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KLRC4	NM_013431	exon2	c.A270T	p.T90T	AACTATTGTTTTT	.	317.0	180.0	344.0	0.0	.	23	.	.	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50190491	50190491	+	Silent	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NCKAP5L	NM_001037806	exon8	c.T1152C	p.G384G	TGGGGTACCCCCA	.	37.0	8.0	43.0	0.0	.	142	.	.	Atlas-SNP
SP7	121340	hgsc.bcm.edu	hg19	12	53723037	53723037	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SP7	NM_152860	exon2	c.T189A	p.A63A	TGGATAAGCATCC	.	63.0	24.0	67.0	0.0	.	30	.	.	Atlas-SNP
CALCOCO1	57658	hgsc.bcm.edu	hg19	12	54118967	54118967	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CALCOCO1	NM_020898	exon2	c.A60T	p.V20V	CCGGGCTACATTG	.	246.0	146.0	230.0	0.0	.	50	.	.	Atlas-SNP
METTL1	4234	hgsc.bcm.edu	hg19	12	58163625	58163625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	METTL1	NM_005371	exon3	c.G389T	p.G130V	TGGAAGCCACCTG	.	135.0	77.0	157.0	0.0	.	14	.	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	hg19	12	71960645	71960645	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LGR5	NM_003667	exon11	c.A1023T	p.S341S	GATCTCATCTCTT	.	176.0	91.0	125.0	0.0	.	103	.	.	Atlas-SNP
USP44	84101	hgsc.bcm.edu	hg19	12	95927304	95927304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USP44	NM_032147	exon2	c.T729A	p.D243E	TACTTTATCTTTT	.	72.0	19.0	63.0	0.0	.	83	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112685903	112685903	+	Missense_Mutation	SNP	T	T	A	rs374617773	alternate_allele	TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_001109662	exon27	c.A3814T	p.M1272L	AAGGCATGTTGTT	.	80.0	16.0	67.0	0.0	.	.	.	.	Atlas-SNP
CCDC42B	387885	hgsc.bcm.edu	hg19	12	113587689	113587689	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC42B	NM_001144872	exon1	c.C27T	p.F9F	ATATTTCCGACTG	.	82.0	48.0	62.0	0.0	.	3	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117669901	117669901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOS1	NM_001204218	exon23	c.C3373G	p.P1125A	AGGGCGGGAGGCG	.	158.0	54.0	190.0	0.0	.	240	.	.	Atlas-SNP
PAN3	255967	hgsc.bcm.edu	hg19	13	28748529	28748529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PAN3	NM_175854	exon2	c.A551T	p.Q184L	TGATGCAGGTATC	.	29.0	20.0	33.0	0.0	.	123	.	.	Atlas-SNP
USPL1	10208	hgsc.bcm.edu	hg19	13	31232186	31232186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	USPL1	NM_005800	exon9	c.G1972T	p.V658F	TCCCAAGTTGTAA	.	72.0	4.0	45.0	0.0	.	82	.	.	Atlas-SNP
N4BP2L2	10443	hgsc.bcm.edu	hg19	13	33092036	33092036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	N4BP2L2	NM_014887	exon6	c.A1655G	p.H552R	CTTTTGTGTGATG	.	77.0	43.0	74.0	0.0	.	90	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35923307	35923307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NBEA	NM_015678	exon37	c.T5966A	p.L1989X	TTATTTTGAACAG	.	102.0	30.0	130.0	0.0	.	340	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77763108	77763108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MYCBP2	NM_015057	exon30	c.C4229A	p.S1410Y	GCAAAAGACCTCT	.	54.0	4.0	57.0	0.0	.	1029	.	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	hg19	13	95822825	95822825	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ABCC4	NM_005845	exon14	c.G1785C	p.Q595H	GAGGTACTGCAAC	.	44.0	19.0	47.0	0.0	.	248	.	.	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	hg19	14	44975744	44975744	+	Silent	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FSCB	NM_032135	exon1	c.A447G	p.E149E	CACTTTTTCTACA	.	167.0	107.0	146.0	0.0	.	173	.	.	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	hg19	14	65209799	65209799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PLEKHG3	NM_015549	exon15	c.A2870T	p.Q957L	CACCACAGCGTTT	.	73.0	22.0	92.0	0.0	.	89	.	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	hg19	14	80997175	80997175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CEP128	NM_152446	exon21	c.T2936G	p.L979R	TCTTCTAGTAGGC	.	68.0	38.0	71.0	0.0	.	146	.	.	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	hg19	14	91787522	91787522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CCDC88C	NM_001080414	exon13	c.A1469T	p.E490V	CTCTCCTCCAACA	.	97.0	22.0	110.0	0.0	.	192	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54306838	54306838	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	UNC13C	NM_001080534	exon1	c.T1738A	p.S580T	CTCCTGTCATCTT	.	35.0	28.0	44.0	0.0	.	674	.	.	Atlas-SNP
MESDC1	59274	hgsc.bcm.edu	hg19	15	81295203	81295203	+	Silent	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MESDC1	NM_022566	exon1	c.G591T	p.A197A	GGACGCGTGCGCC	.	9.0	7.0	2.0	0.0	.	7	.	.	Atlas-SNP
CLCN7	1186	hgsc.bcm.edu	hg19	16	1511413	1511413	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CLCN7	NM_001287	exon4	c.A344T	p.N115I	GTGTGATTGATCC	.	59.0	26.0	68.0	0.0	.	53	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	10032379	10032379	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GRIN2A	NM_000833	exon4	c.A444T	p.G148G	GGACGCTCCAAAC	.	29.0	18.0	26.0	0.0	.	366	.	.	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	hg19	16	23711862	23711862	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERN2	NM_033266	exon13	c.A1667T	p.E556V	TCACCTTCAGGGT	.	59.0	34.0	58.0	0.0	.	131	.	.	Atlas-SNP
SLC52A1	55065	hgsc.bcm.edu	hg19	17	4936947	4936947	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	.	NM_017986	exon3	c.T837A	p.G279G	GAAGGCACCATGG	.	84.0	72.0	108.0	0.0	.	.	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578461	7578461	+	Missense_Mutation	SNP	C	C	A	rs121912654		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	TP53_ENST00000545858,NS,carcinoma,+1,5	TP53	NM_000546	exon5	c.G469T	p.V157F	CGCGGACGCGGGT	.	82.0	61.0	199.0	2.0	.	33396	.	.	Atlas-SNP
ZNF286A	57335	hgsc.bcm.edu	hg19	17	15619693	15619693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF286A	NM_020652	exon6	c.A655T	p.T219S	TTCCATACACTTG	.	96.0	49.0	86.0	0.0	.	58	.	.	Atlas-SNP
RHBDL3	162494	hgsc.bcm.edu	hg19	17	30616020	30616020	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RHBDL3	NM_138328	exon4	c.A504T	p.T168T	GATCACAGTCACG	.	180.0	106.0	246.0	0.0	.	49	.	.	Atlas-SNP
MRPL45	84311	hgsc.bcm.edu	hg19	17	36478426	36478426	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MRPL45	NM_032351	exon8	c.A869T	p.E290V	AACCAGAAGAAGA	.	50.0	11.0	86.0	0.0	.	27	.	.	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	hg19	17	72351437	72351437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	KIF19	NM_153209	exon20	c.T2983C	p.S995P	GGATGCTCCCGGC	.	53.0	10.0	52.0	0.0	.	102	.	.	Atlas-SNP
GALK1	2584	hgsc.bcm.edu	hg19	17	73760089	73760089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	GALK1	NM_000154	exon2	c.G244T	p.A82S	CATCGGCACCCTC	.	57.0	17.0	69.0	0.0	.	17	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80049390	80049390	+	Silent	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FASN	NM_004104	exon9	c.G1200A	p.V400V	GATGTGCACGTTG	.	128.0	36.0	157.0	0.0	.	154	.	.	Atlas-SNP
MC2R	4158	hgsc.bcm.edu	hg19	18	13885429	13885429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	MC2R	NM_000529	exon2	c.T89C	p.I30T	AAAAATATCTCCT	.	65.0	23.0	62.0	0.0	.	78	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31320038	31320038	+	Silent	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ASXL3	NM_030632	exon11	c.A2670T	p.T890T	AGGGACAGATAAT	.	50.0	21.0	53.0	0.0	.	405	.	.	Atlas-SNP
MAP2K2	5605	hgsc.bcm.edu	hg19	19	4110509	4110509	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	MAP2K2_ENST00000262948,right_upper_lobe,carcinoma,0,2	MAP2K2	NM_030662	exon3	c.A448T	p.M150L	TCACCATGTGTTC	.	17.0	8.0	59.0	0.0	.	72	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23543010	23543010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF91	NM_003430	exon4	c.A2771T	p.H924L	GTAAGGTGTGAAG	.	28.0	9.0	22.0	0.0	.	349	.	.	Atlas-SNP
C19orf69	100170765	hgsc.bcm.edu	hg19	19	41949136	41949136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	C19orf69	NM_001130514	exon1	c.C62A	p.P21H	CACCCCCCCAGGC	.	24.0	10.0	26.0	0.0	.	4	.	.	Atlas-SNP
NUP62	23636	hgsc.bcm.edu	hg19	19	50412454	50412454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NUP62	NM_153719	exon3	c.A611G	p.Q204R	GCTGGCTGTGTGG	.	86.0	38.0	106.0	0.0	.	50	.	.	Atlas-SNP
ZNF581	51545	hgsc.bcm.edu	hg19	19	56156253	56156253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF581	NM_016535	exon2	c.A316T	p.S106C	CGACACAGCATCA	.	170.0	85.0	229.0	0.0	.	13	.	.	Atlas-SNP
ZNF835	90485	hgsc.bcm.edu	hg19	19	57175003	57175003	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ZNF835	NM_001005850	exon2	c.T1564A	p.C522S	GTTGACAGGTTTC	.	143.0	56.0	188.0	0.0	.	106	.	.	Atlas-SNP
HSPA12B	116835	hgsc.bcm.edu	hg19	20	3732438	3732438	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	HSPA12B	NM_052970	exon13	c.G1686A	p.L562L	GCTGCTGGTTCGC	.	5.0	5.0	2.0	0.0	.	43	.	.	Atlas-SNP
RALGAPA2	57186	hgsc.bcm.edu	hg19	20	20585826	20585826	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	RALGAPA2	NM_020343	exon15	c.A2031T	p.R677R	TTTGCCTCGTTGC	.	97.0	23.0	99.0	0.0	.	274	.	.	Atlas-SNP
PMEPA1	56937	hgsc.bcm.edu	hg19	20	56227157	56227157	+	Silent	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	PMEPA1	NM_020182	exon4	c.A816T	p.A272A	GATGGCTGCGCTC	.	37.0	12.0	27.0	0.0	.	29	.	.	Atlas-SNP
TRMT2A	27037	hgsc.bcm.edu	hg19	22	20102931	20102931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	TRMT2A	NM_001257994	exon4	c.G748A	p.G250R	CCACCCCGACGCC	.	58.0	21.0	75.0	0.0	.	34	.	.	Atlas-SNP
ELFN2	114794	hgsc.bcm.edu	hg19	22	37771020	37771020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ELFN2	NM_052906	exon3	c.C555A	p.N185K	GAAGGGGTTGCCG	.	118.0	43.0	181.0	0.0	.	89	.	.	Atlas-SNP
NOL12	79159	hgsc.bcm.edu	hg19	22	38082401	38082401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NOL12	NM_024313	exon1	c.T2A	p.M1K	CTGCTATGGGCCG	.	50.0	20.0	66.0	0.0	.	22	.	.	Atlas-SNP
SMCR7L	54471	hgsc.bcm.edu	hg19	22	39909580	39909580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SMCR7L	NM_019008	exon6	c.G644T	p.W215L	ACCTGTGGTCATG	.	72.0	29.0	112.0	0.0	.	33	.	.	Atlas-SNP
CHADL	150356	hgsc.bcm.edu	hg19	22	41632548	41632548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CHADL	NM_138481	exon4	c.A2003T	p.E668V	ATGAGCTCCAGCT	.	108.0	41.0	164.0	0.0	.	20	.	.	Atlas-SNP
AKAP17A	8227	hgsc.bcm.edu	hg19	X	1718233	1718233	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	AKAP17A	NM_005088	exon4	c.G1060T	p.E354X	CTGCAGGAGAAGA	.	65.0	40.0	178.0	0.0	.	46	.	.	Atlas-SNP
ARX	170302	hgsc.bcm.edu	hg19	X	25033712	25033712	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ARX	NM_139058	exon1	c.A143T	p.Q48L	AAGCTCTGCGCGG	.	48.0	40.0	132.0	0.0	.	19	.	.	Atlas-SNP
ERCC6L	54821	hgsc.bcm.edu	hg19	X	71425152	71425152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	ERCC6L	NM_017669	exon2	c.C3465A	p.N1155K	GGACTTGTTTTCT	.	49.0	39.0	59.0	0.0	.	98	.	.	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	hg19	X	79989645	79989645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	BRWD3	NM_153252	exon11	c.A1058T	p.E353V	ATTTTCTCAGGAA	.	63.0	6.0	81.0	0.0	.	251	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83126557	83126557	+	Silent	SNP	G	G	A	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	CYLC1	NM_021118	exon3	c.G156A	p.L52L	ACCTTTGAAATCA	.	58.0	35.0	99.0	0.0	.	272	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	hg19	X	134994077	134994077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SAGE1	NM_018666	exon18	c.A2486T	p.Y829F	TAAAATATCAATT	.	37.0	31.0	55.0	0.0	.	160	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101606245	101606246	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	LRRK1	NM_024652	exon32	c.5602_5603del	p.1868_1868del	.	.	70.0	57.0	104.0	0.0	.	310	.	.	Atlas-Indel,Pindel
P4HA1	5033	hgsc.bcm.edu	hg19	10	74803644	74803660	+	In_Frame_Del	DEL	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	CCTCTTAGATACTCTGT	CCTCTTAGATACTCTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	P4HA1	NM_001142596	exon9	c.1134_1148del	p.378_383del	.	.	24.0	13.0	76.0	0.0	.	86	.	.	Atlas-Indel,Pindel
BAI3	577	hgsc.bcm.edu	hg19	6	70040467	70040467	+	Splice_Site	DEL	A	A	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	BAI3	NM_001704	exon23	c.3102+2A>-	.	.	.	40.0	14.0	42.0	0.0	.	451	.	.	Atlas-INDEL
NME6	10201	hgsc.bcm.edu	hg19	3	48339972	48339972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	NME6	NM_005793	exon2	c.60delG	p.Q20fs	.	.	97.0	27.0	109.0	0.0	.	14	.	.	Atlas-Indel,Pindel
IPO7	10527	hgsc.bcm.edu	hg19	11	9462080	9462080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	IPO7	NM_006391	exon23	c.2773delG	p.E925fs	.	.	152.0	48.0	137.0	0.0	.	72	.	.	Atlas-Indel,Pindel
SCN11A	11280	hgsc.bcm.edu	hg19	3	38951586	38951586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	SCN11A	NM_014139	exon8	c.1073delA	p.Q358fs	.	.	94.0	23.0	59.0	0.0	.	296	.	.	Atlas-Indel,Pindel
FBLN2	2199	hgsc.bcm.edu	hg19	3	13670764	13670765	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001165035	exon13	c.2813_2814del	p.938_938del	.	.	106.0	54.0	108.0	0.0	.	137	.	.	Atlas-INDEL
FBLN2	2199	hgsc.bcm.edu	hg19	3	13670765	13670766	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-CC-A5UD-01A-11D-A28X-10	TCGA-CC-A5UD-10A-01D-A28X-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6b1d8861-8326-40ac-b595-5862822407d8	c0bd90d9-4ca2-40af-af50-d23f00558550	.	FBLN2	NM_001165035	exon13	c.2814_2815del	p.938_939del	.	.	105.0	31.0	109.0	0.0	.	137	.	.	Pindel
