Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
EFHD2	79180	hgsc.bcm.edu	hg19	1	15753664	15753664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EFHD2	NM_024329	exon3	c.A475G	p.K159E	TTCCGCAAGGCGG	.	67.0	30.0	131.0	0.0	.	10	.	.	Atlas-SNP
ZMYM1	79830	hgsc.bcm.edu	hg19	1	35578710	35578710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZMYM1	NM_024772	exon10	c.A1279G	p.N427D	AAAGACAATATGA	.	144.0	31.0	238.0	0.0	.	86	.	.	Atlas-SNP
EBNA1BP2	10969	hgsc.bcm.edu	hg19	1	43637963	43637963	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	EBNA1BP2	NM_001159936	exon1	c.T130C	p.L44L	TGCTCAACTTTTG	.	49.0	13.0	93.0	0.0	.	37	.	.	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	hg19	1	67833704	67833704	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IL12RB2	NM_001559	exon10	c.T1455C	p.I485I	TCTGATTTCAGGT	.	47.0	6.0	53.0	0.0	.	94	.	.	Atlas-SNP
MAN1A2	10905	hgsc.bcm.edu	hg19	1	117944848	117944848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAN1A2	NM_006699	exon2	c.C343T	p.H115Y	GCTGATCATGAGA	.	122.0	27.0	186.0	0.0	.	50	.	.	Atlas-SNP
RCSD1	92241	hgsc.bcm.edu	hg19	1	167666394	167666394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RCSD1	NM_052862	exon6	c.A533C	p.Q178P	GGTCACAGTCAGA	.	167.0	12.0	167.0	0.0	.	64	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216040477	216040477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	USH2A	NM_206933	exon44	c.A8717G	p.N2906S	ACACTGTTGTGTA	.	134.0	57.0	129.0	0.0	.	1168	.	.	Atlas-SNP
TRIM58	25893	hgsc.bcm.edu	hg19	1	248024000	248024000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRIM58	NM_015431	exon2	c.A502G	p.T168A	AAAAAGACTGTCA	.	140.0	67.0	163.0	0.0	.	143	.	.	Atlas-SNP
OR14I1	401994	hgsc.bcm.edu	hg19	1	248844793	248844793	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OR14I1	NM_001004734	exon1	c.G813T	p.V271V	AGCAATCACTAAA	.	65.0	14.0	64.0	0.0	.	64	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29259514	29259514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM179A	NM_199280	exon18	c.C2526A	p.H842Q	CTTACACCCCATG	.	90.0	36.0	98.0	0.0	.	106	.	.	Atlas-SNP
ASTL	431705	hgsc.bcm.edu	hg19	2	96799781	96799781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ASTL	NM_001002036	exon4	c.T260G	p.L87R	GCTGACAGCAGTC	.	36.0	13.0	67.0	0.0	.	59	.	.	Atlas-SNP
ST6GAL2	84620	hgsc.bcm.edu	hg19	2	107423271	107423271	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ST6GAL2	NM_032528	exon6	c.C1453T	p.L485L	AGAGTAGTGGGTG	.	75.0	35.0	89.0	0.0	.	159	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210588377	210588377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP2	NM_001039538	exon12	c.A1235T	p.K412M	GTTCCAAGGATAA	.	167.0	74.0	234.0	0.0	.	372	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225688292	225688292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DOCK10	NM_014689	exon28	c.C3109A	p.H1037N	TCACATGGTCGGA	.	89.0	44.0	91.0	0.0	.	308	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154146446	154146446	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR149	NM_001038705	exon1	c.T959A	p.V320D	AGGACGACTTTTG	.	114.0	47.0	189.0	0.0	.	134	.	.	Atlas-SNP
MFSD1	64747	hgsc.bcm.edu	hg19	3	158525238	158525238	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MFSD1	NM_022736	exon5	c.A573C	p.G191G	ATTTGGAAGATTT	.	71.0	29.0	116.0	0.0	.	88	.	.	Atlas-SNP
VPS8	23355	hgsc.bcm.edu	hg19	3	184646286	184646286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	VPS8	NM_001009921	exon31	c.G2679C	p.E893D	TGAAGAGAGTCGA	.	96.0	44.0	116.0	0.0	.	109	.	.	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	hg19	4	25005095	25005095	+	Missense_Mutation	SNP	A	A	G	rs150163590		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	LGI2	NM_018176	exon8	c.T1616C	p.I539T	ACAATTATATGTT	.	105.0	43.0	147.0	0.0	.	62	.	A|1.000;G|0.000	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	42895442	42895442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GRXCR1	NM_001080476	exon1	c.T159A	p.D53E	GATAGATGGACTA	.	89.0	47.0	119.0	0.0	.	78	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55964415	55964415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDR	NM_002253	exon17	c.G2398C	p.G800R	AGTAGCCTGTCTT	.	83.0	21.0	139.0	0.0	.	307	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155412382	155412382	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DCHS2	NM_001142552	exon1	c.G126A	p.R42R	CTGCGTCCTGGCG	.	63.0	14.0	86.0	0.0	.	594	.	.	Atlas-SNP
RAPGEF2	9693	hgsc.bcm.edu	hg19	4	160243510	160243510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RAPGEF2	NM_014247	exon4	c.G382T	p.E128X	CTCTTGGAATTTA	.	71.0	53.0	152.0	0.0	.	171	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175898867	175898867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAM29	NM_001130703	exon4	c.C2191A	p.Q731K	CCTCCCCAGAGTC	.	58.0	50.0	143.0	0.0	.	262	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175898869	175898869	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	ADAM29,colon,carcinoma,0,1	ADAM29	NM_001130703	exon4	c.G2193A	p.Q731Q	TCCCCAGAGTCAA	.	58.0	50.0	142.0	1.0	.	262	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5462512	5462512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KIAA0947	NM_015325	exon13	c.G3065C	p.G1022A	GCTGTGGAGACAC	.	67.0	15.0	102.0	0.0	.	301	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7709399	7709399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	ADCY2_ENST00000537121,NS,carcinoma,-1,3	ADCY2	NM_020546	exon10	c.C1477T	p.R493C	TCGGTCCGCATGA	.	85.0	29.0	94.0	0.0	.	337	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13917343	13917343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH5	NM_001369	exon8	c.G998A	p.R333Q	GTGATTCGAATAT	.	63.0	26.0	64.0	0.0	.	868	.	.	Atlas-SNP
PJA2	9867	hgsc.bcm.edu	hg19	5	108714271	108714271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PJA2	NM_014819	exon4	c.A917G	p.H306R	CTTCCATGGTTCT	.	86.0	18.0	90.0	0.0	.	53	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140433011	140433011	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDHB1	NM_013340	exon1	c.T1956A	p.A652A	ACCAGCTCTTTCC	.	81.0	33.0	108.0	0.0	.	148	.	.	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	hg19	6	393203	393203	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IRF4	NM_001195286	exon2	c.G51A	p.V17V	CGCGGTGAGCTGC	.	123.0	51.0	134.0	0.0	.	65	.	.	Atlas-SNP
AGER	177	hgsc.bcm.edu	hg19	6	32149151	32149151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AGER	NM_172197	exon9	c.G940A	p.A314T	TTGCCGCCTTTGC	.	57.0	21.0	55.0	0.0	.	15	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38858481	38858481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAH8	NM_001206927	exon58	c.T8527C	p.C2843R	CAAATATGTGAGA	.	62.0	30.0	87.0	0.0	.	1239	.	.	Atlas-SNP
MAP7	9053	hgsc.bcm.edu	hg19	6	136704840	136704840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MAP7	NM_001198609	exon6	c.A672T	p.S224S	TGCAGATGAAGAG	.	46.0	35.0	84.0	0.0	.	63	.	.	Atlas-SNP
FBXL18	80028	hgsc.bcm.edu	hg19	7	5541166	5541166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FBXL18	NM_024963	exon3	c.A734T	p.E245V	ACCACCTCCTGGT	.	70.0	33.0	87.0	0.0	.	99	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98552830	98552830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRRAP	NM_001244580	exon40	c.A5819T	p.Q1940L	GGCACCAGATGCT	.	69.0	35.0	83.0	0.0	.	863	.	.	Atlas-SNP
CYP3A5	1577	hgsc.bcm.edu	hg19	7	99270218	99270218	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CYP3A5	NM_001190484	exon4	c.C303A	p.V101V	TGTGAAGACAGAA	.	131.0	48.0	149.0	0.0	.	46	.	.	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	hg19	7	149152414	149152414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF777	NM_015694	exon2	c.C700A	p.L234M	TCTCCAGATGGTT	.	66.0	26.0	73.0	0.0	.	63	.	.	Atlas-SNP
GIMAP1-GIMAP5	0	hgsc.bcm.edu	hg19	7	150416151	150416151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001199577	exon2	c.A16C	p.M6L	AGGAAGATGGCGA	.	50.0	23.0	73.0	0.0	.	.	.	.	Atlas-SNP
HTR5A	3361	hgsc.bcm.edu	hg19	7	154862937	154862937	+	Missense_Mutation	SNP	G	G	T	rs141719500	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	HTR5A,NS,carcinoma,0,1	HTR5A	NM_024012	exon1	c.G328T	p.G110C	CAGCTAGGTCGGA	.	14.0	6.0	26.0	0.0	.	114	.	G|1.000;C|0.000	Atlas-SNP
IMPAD1	54928	hgsc.bcm.edu	hg19	8	57892756	57892756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	IMPAD1	NM_017813	exon2	c.A388G	p.I130V	TATTAATCTGCAT	.	66.0	38.0	96.0	0.0	.	27	.	.	Atlas-SNP
TMEM74	157753	hgsc.bcm.edu	hg19	8	109796877	109796877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TMEM74	NM_153015	exon2	c.G451T	p.A151S	TGGCAGCCTCTTG	.	240.0	114.0	143.0	0.0	.	70	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113418769	113418769	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	CSMD3_ENST00000343508,NS,carcinoma,0,1	CSMD3	NM_198123	exon35	c.C5793A	p.S1931S	AGGTAAGGAATCA	.	222.0	85.0	170.0	0.0	.	2325	.	.	Atlas-SNP
MRPL13	28998	hgsc.bcm.edu	hg19	8	121444294	121444294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MRPL13	NM_014078	exon3	c.A221G	p.Q74R	ACTTTTTGTTCCC	.	207.0	21.0	138.0	0.0	.	18	.	.	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	hg19	9	6986628	6986628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KDM4C	NM_001146696	exon11	c.G1705C	p.V569L	CCAGCGGTCCCCA	.	61.0	11.0	100.0	0.0	.	186	.	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	hg19	9	14816776	14816776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FREM1	NM_144966	exon16	c.G2640T	p.E880D	ACCCACCTCAACA	.	40.0	25.0	63.0	0.0	.	261	.	.	Atlas-SNP
GNE	10020	hgsc.bcm.edu	hg19	9	36246477	36246477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GNE	NM_001128227	exon3	c.A260G	p.N87S	TATGTATTTCTAA	.	33.0	22.0	47.0	0.0	.	141	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73442764	73442764	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon6	c.A972T	p.T324T	CTTACTTGTGTTT	.	81.0	20.0	80.0	0.0	.	700	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73479369	73479369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TRPM3	NM_001007471	exon2	c.C236G	p.P79R	GTGCTGGGTATGA	.	38.0	12.0	51.0	0.0	.	700	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79322771	79322771	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PRUNE2	NM_015225	exon8	c.G4419A	p.E1473E	CTCTGGCTCTAGA	.	37.0	19.0	65.0	0.0	.	331	.	.	Atlas-SNP
PSAT1	29968	hgsc.bcm.edu	hg19	9	80923477	80923477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PSAT1	NM_021154	exon6	c.T718C	p.Y240H	TCCTTGTACAACA	.	31.0	18.0	40.0	0.0	.	33	.	.	Atlas-SNP
GFI1B	8328	hgsc.bcm.edu	hg19	9	135862139	135862139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GFI1B	NM_001135031	exon2	c.C74T	p.P25L	ATGAACCGCTCTG	.	34.0	17.0	64.0	0.0	.	37	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138676396	138676396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNT1	NM_020822	exon26	c.T2959A	p.Y987N	AAGGACTACATGA	.	62.0	24.0	114.0	0.0	.	139	.	.	Atlas-SNP
FAM69B	138311	hgsc.bcm.edu	hg19	9	139612124	139612124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	FAM69B	NM_152421	exon2	c.C159A	p.Y53X	GTCCTACTCGGAG	.	27.0	15.0	28.0	0.0	.	22	.	.	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	hg19	10	34558586	34558586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PARD3	NM_019619	exon22	c.A3427G	p.S1143G	CCTACCTGTCTAC	.	77.0	28.0	96.0	0.0	.	131	.	.	Atlas-SNP
CSTF2T	23283	hgsc.bcm.edu	hg19	10	53458521	53458521	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CSTF2T	NM_015235	exon1	c.A789T	p.P263P	TGGAGCTGGAATT	.	48.0	23.0	49.0	0.0	.	64	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55582876	55582876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	PCDH15	NM_001142763	exon35	c.C4631A	p.S1544X	TTTGTTGATACTT	.	53.0	22.0	65.0	0.0	.	1715	.	.	Atlas-SNP
CCSER2	54462	hgsc.bcm.edu	hg19	10	86131217	86131217	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCSER2	NM_018999	exon2	c.G409T	p.E137X	ACAGAGGAGTTAA	.	163.0	72.0	173.0	0.0	.	7	.	.	Atlas-SNP
TEX36	387718	hgsc.bcm.edu	hg19	10	127350498	127350498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001128202	exon2	c.G100T	p.A34S	ACGTAGCACTGGT	.	64.0	25.0	82.0	0.0	.	.	.	.	Atlas-SNP
HPX	3263	hgsc.bcm.edu	hg19	11	6453022	6453022	+	Silent	SNP	T	T	C	rs377761910		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	HPX	NM_000613	exon9	c.A978G	p.V326V	GACATATACCTGG	.	42.0	20.0	45.0	0.0	.	33	.	.	Atlas-SNP
OLFML1	283298	hgsc.bcm.edu	hg19	11	7530924	7530924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	OLFML1	NM_198474	exon3	c.A714C	p.K238N	AATCAAATATAAC	.	81.0	31.0	116.0	0.0	.	54	.	.	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	hg19	11	22380971	22380971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SLC17A6	NM_020346	exon4	c.T471G	p.A157A	CGGAGCTGCCATA	.	47.0	20.0	62.0	0.0	.	135	.	.	Atlas-SNP
OR8J1	219477	hgsc.bcm.edu	hg19	11	56127868	56127868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	OR8J1,NS,carcinoma,0,1	OR8J1	NM_001005205	exon1	c.C146A	p.T49N	CCCTCACCAGTGT	.	145.0	71.0	168.0	0.0	.	87	.	.	Atlas-SNP
AQP11	282679	hgsc.bcm.edu	hg19	11	77301269	77301269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	AQP11	NM_173039	exon1	c.A232T	p.T78S	ACCTGGACGCTGA	.	46.0	19.0	51.0	0.0	.	14	.	.	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825257	95825257	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	MAML2,colon,carcinoma,0,1	MAML2	NM_032427	exon2	c.A1938G	p.Q646Q	CTGCTGTTGTTGC	.	44.0	4.0	54.0	1.0	.	94	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DYNC2H1	NM_001377	exon19	c.G2758A	p.D920N	GTGATTGATGATC	.	46.0	14.0	61.0	0.0	.	246	.	.	Atlas-SNP
BUD13	84811	hgsc.bcm.edu	hg19	11	116628662	116628662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BUD13	NM_032725	exon8	c.G1504A	p.A502T	TCTGGGCAAGCCT	.	35.0	13.0	42.0	0.0	.	41	.	.	Atlas-SNP
OR8G2	26492	hgsc.bcm.edu	hg19	11	124095697	124095697	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001007249	exon1	c.A300C	p.T100T	TGTGACAGAGAAG	.	68.0	21.0	103.0	0.0	.	.	.	.	Atlas-SNP
BCAT1	586	hgsc.bcm.edu	hg19	12	25002861	25002861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BCAT1	NM_001178093	exon6	c.C569A	p.P190H	TTGGTAGGCTTCT	.	79.0	36.0	102.0	0.0	.	44	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43860553	43860553	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ADAMTS20	NM_025003	exon9	c.A1269G	p.K423K	TGTAACTTTCATT	.	54.0	17.0	79.0	0.0	.	635	.	.	Atlas-SNP
NFE2	4778	hgsc.bcm.edu	hg19	12	54686660	54686660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NFE2	NM_001261461	exon4	c.C620T	p.P207L	GAGGAGGGCTCTA	.	103.0	26.0	151.0	0.0	.	28	.	.	Atlas-SNP
DEPDC4	120863	hgsc.bcm.edu	hg19	12	100660786	100660786	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DEPDC4	NM_152317	exon1	c.T69A	p.L23L	ACTGACAAGTCTA	.	60.0	21.0	77.0	0.0	.	34	.	.	Atlas-SNP
CCDC53	51019	hgsc.bcm.edu	hg19	12	102433674	102433674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCDC53	NM_016053	exon5	c.A407G	p.Y136C	CTGGCATATCTTG	.	64.0	36.0	67.0	0.0	.	14	.	.	Atlas-SNP
UBC	7316	hgsc.bcm.edu	hg19	12	125397123	125397123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UBC	NM_021009	exon2	c.C1195T	p.P399S	CACTCGGCTCCAC	.	238.0	87.0	310.0	0.0	.	79	.	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46083887	46083887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	COG3	NM_031431	exon15	c.G1655T	p.G552V	TTCATGGAATGTG	.	83.0	30.0	199.0	0.0	.	52	.	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96555132	96555132	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	UGGT2	NM_020121	exon21	c.T2478C	p.D826D	AATTTTATCTCCA	.	94.0	20.0	83.0	0.0	.	127	.	.	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34269611	34269611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NPAS3	NM_001164749	exon12	c.G2098T	p.G700W	GGCGGTGGGGGTG	.	74.0	16.0	92.0	0.0	.	266	.	.	Atlas-SNP
KCNK10	54207	hgsc.bcm.edu	hg19	14	88707142	88707142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	KCNK10	NM_138318	exon3	c.C425T	p.A142V	ACTCCCGCATTGT	.	29.0	12.0	49.0	0.0	.	273	.	.	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93720042	93720042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BTBD7	NM_001002860	exon7	c.G1703A	p.G568D	TAGATGCCAGCAT	.	62.0	20.0	61.0	0.0	.	112	.	.	Atlas-SNP
BAG5	9529	hgsc.bcm.edu	hg19	14	104026264	104026264	+	Missense_Mutation	SNP	T	T	C	rs143892215	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	BAG5	NM_001015049	exon2	c.A1361G	p.D454G	TGCGGATCAACAG	.	98.0	44.0	121.0	0.0	.	47	.	T|1.000;A|0.000	Atlas-SNP
RASGRP1	10125	hgsc.bcm.edu	hg19	15	38794569	38794569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RASGRP1	NM_005739	exon12	c.A1482C	p.E494D	TTCAAATTCTTCC	.	78.0	43.0	88.0	0.0	.	50	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68657110	68657110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ITGA11	NM_001004439	exon4	c.G292A	p.E98K	TCCGCTCGGACAC	.	123.0	28.0	118.0	0.0	.	110	.	.	Atlas-SNP
CCNF	899	hgsc.bcm.edu	hg19	16	2499459	2499459	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CCNF	NM_001761	exon12	c.G1395T	p.G465G	GCACGGGCAGAGT	.	13.0	6.0	14.0	0.0	.	110	.	.	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	hg19	16	24579152	24579152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RBBP6	NM_006910	exon16	c.T1992G	p.D664E	AAATGATTTTGCT	.	178.0	15.0	250.0	0.0	.	158	.	.	Atlas-SNP
DNAJA2	10294	hgsc.bcm.edu	hg19	16	47005262	47005262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	DNAJA2	NM_005880	exon3	c.A361C	p.K121Q	TTCACTTGAGTGG	.	225.0	158.0	99.0	0.0	.	28	.	.	Atlas-SNP
CD68	968	hgsc.bcm.edu	hg19	17	7483022	7483022	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CD68	NM_001040059	exon1	c.G27C	p.G9G	CTCGGGGGCCCTG	.	22.0	12.0	55.0	0.0	.	17	.	.	Atlas-SNP
CACNB1	782	hgsc.bcm.edu	hg19	17	37347830	37347830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CACNB1	NM_199248	exon3	c.A188G	p.Y63C	CTGGTGTAGGACT	.	46.0	12.0	64.0	0.0	.	89	.	.	Atlas-SNP
ZCCHC2	54877	hgsc.bcm.edu	hg19	18	60242216	60242216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZCCHC2	NM_017742	exon13	c.C2902G	p.P968A	CCAGGCCCTGCCC	.	52.0	21.0	58.0	0.0	.	64	.	.	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	hg19	18	63511191	63511191	+	Silent	SNP	T	T	A	rs139333396	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CDH7	NM_004361	exon7	c.T1125A	p.P375P	GCCCCCTGTGTTC	.	137.0	48.0	183.0	0.0	.	362	.	T|0.999;C|0.001	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9059979	9059979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	MUC16_ENST00000397910,NS,carcinoma,0,2	MUC16	NM_024690	exon3	c.C27467A	p.S9156Y	GGAGAAGATGAGG	.	66.0	19.0	95.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9084032	9084032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	MUC16	NM_024690	exon1	c.A7783T	p.S2595C	AAAGGCTCTCAGG	.	96.0	23.0	128.0	0.0	.	4315	.	.	Atlas-SNP
CALR	811	hgsc.bcm.edu	hg19	19	13054713	13054713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CALR	NM_004343	exon9	c.A1240G	p.K414E	CAGGCCAAGGACG	.	109.0	37.0	181.0	0.0	.	31	.	.	Atlas-SNP
NOVA2	4858	hgsc.bcm.edu	hg19	19	46457041	46457041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	NOVA2	NM_002516	exon3	c.G393T	p.K131N	GACCTGCTTGGCT	.	67.0	25.0	140.0	0.0	.	38	.	.	Atlas-SNP
CARD8	22900	hgsc.bcm.edu	hg19	19	48734194	48734194	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	CARD8	NM_001184900	exon6	c.G612A	p.E204E	TGTGACCTCATCC	.	98.0	68.0	135.0	0.0	.	53	.	.	Atlas-SNP
ZNF551	90233	hgsc.bcm.edu	hg19	19	58193543	58193543	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF551	NM_138347	exon1	c.G12T	p.P4P	CGCCCCGGTCGGC	.	17.0	10.0	17.0	0.0	.	65	.	.	Atlas-SNP
C20orf27	54976	hgsc.bcm.edu	hg19	20	3739248	3739248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	C20orf27	NM_001039140	exon3	c.G172T	p.D58Y	TCTCATCAAAGTG	.	23.0	18.0	46.0	0.0	.	17	.	.	Atlas-SNP
SSTR4	6754	hgsc.bcm.edu	hg19	20	23016896	23016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	SSTR4	NM_001052	exon1	c.G776A	p.R259K	TCACCAGGCTGGT	.	33.0	10.0	44.0	0.0	.	83	.	.	Atlas-SNP
TBC1D25	4943	hgsc.bcm.edu	hg19	X	48418242	48418242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	TBC1D25	NM_002536	exon6	c.G946T	p.D316Y	CTGCACGACCTGC	.	63.0	53.0	77.0	0.0	.	70	.	.	Atlas-SNP
ARMCX1	51309	hgsc.bcm.edu	hg19	X	100808723	100808723	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ARMCX1	NM_016608	exon4	c.C810A	p.A270A	CAATGCCCTTAAT	.	33.0	27.0	34.0	0.0	.	67	.	.	Atlas-SNP
ARMCX1	51309	hgsc.bcm.edu	hg19	X	100808724	100808724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ARMCX1	NM_016608	exon4	c.C811A	p.L271I	AATGCCCTTAATA	.	33.0	27.0	34.0	0.0	.	67	.	.	Atlas-SNP
RHOXF1	158800	hgsc.bcm.edu	hg19	X	119243261	119243261	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RHOXF1	NM_139282	exon4	c.445-1G>C	.	CCAAACCTACAAT	.	39.0	35.0	64.0	0.0	.	24	.	.	Atlas-SNP
GPR119	139760	hgsc.bcm.edu	hg19	X	129518890	129518890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	GPR119	NM_178471	exon1	c.A532T	p.M178L	GGAGCATGGCTGG	.	38.0	32.0	54.0	0.0	.	34	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48954325	48954326	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1445_1446del	p.482_482del	.	.	37.0	20.0	199.0	0.0	.	1068	.	.	Atlas-INDEL
RB1	5925	hgsc.bcm.edu	hg19	13	48954328	48954334	+	Frame_Shift_Del	DEL	TATGTCT	TATGTCT	-	rs5803433	alternate_allele	TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TATGTCT	TATGTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1448_1454del	p.483_485del	.	.	36.0	20.0	206.0	0.0	.	1068	.	.	Atlas-INDEL
ZNF669	79862	hgsc.bcm.edu	hg19	1	247264138	247264138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF669	NM_024804	exon4	c.934delG	p.G312fs	.	.	92.0	22.0	84.0	0.0	.	46	.	.	Atlas-Indel,Pindel
RPS4Y1	6192	hgsc.bcm.edu	hg19	Y	2722723	2722724	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RPS4Y1	NM_001008	exon5	c.443_444insCT	p.R148fs	.	.	122.0	99.0	141.0	0.0	.	4	.	.	Atlas-Indel,Pindel
ZNF680	340252	hgsc.bcm.edu	hg19	7	63982871	63982872	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	ZNF680	NM_178558	exon4	c.261_262del	p.87_88del	.	.	46.0	14.0	54.0	0.0	.	58	.	.	Atlas-Indel,Pindel
STX10	8677	hgsc.bcm.edu	hg19	19	13259885	13259886	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	STX10	NM_003765	exon4	c.321_322insT	p.V107fs	.	.	71.0	16.0	139.0	0.0	.	12	.	.	Atlas-Indel,Pindel
FAM220A	84792	hgsc.bcm.edu	hg19	7	6370320	6370355	+	In_Frame_Del	DEL	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	GCAGTCGTGACACCCGAGGCTCTCCTTTGGGGCACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	.	NM_001037163	exon2	c.432_467del	p.144_156del	.	.	42.0	12.0	98.0	0.0	.	.	.	.	Pindel
RB1	5925	hgsc.bcm.edu	hg19	13	48954325	48954334	+	Frame_Shift_Del	DEL	TCATATGTCT	TCATATGTCT	-	novel		TCGA-CC-A7IF-01A-11D-A33K-10	TCGA-CC-A7IF-10A-01D-A33K-10	TCATATGTCT	TCATATGTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6bd5100-cf29-4f48-82d6-9f3a0c8891a2	37a06484-87a9-4ed4-b9bc-9f9a5ae7a317	.	RB1	NM_000321	exon16	c.1445_1454del	p.482_485del	.	.	44.0	20.0	210.0	0.0	.	1068	.	.	Pindel
