Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SCNN1D	6339	hgsc.bcm.edu	hg19	1	1222886	1222886	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCNN1D	NM_001130413	exon10	c.1311-2A>T	.	CATTCCAGACAGT	.	71.0	24.0	114.0	0.0	.	60	.	.	Atlas-SNP
EXOSC10	5394	hgsc.bcm.edu	hg19	1	11141273	11141273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EXOSC10	NM_001001998	exon11	c.A1303T	p.S435C	CGTAGCTGAGCAT	.	128.0	55.0	161.0	0.0	.	59	.	.	Atlas-SNP
PRAMEF12	390999	hgsc.bcm.edu	hg19	1	12837669	12837669	+	Missense_Mutation	SNP	G	G	A	rs201008398	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRAMEF12	NM_001080830	exon3	c.G1379A	p.G460D	GCTGTGGCATCAG	.	275.0	125.0	291.0	0.0	.	69	.	G|0.993;T|0.007	Atlas-SNP
PRAMEF4	400735	hgsc.bcm.edu	hg19	1	12942173	12942173	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G377C	p.C126S	AGGAAGCACCCAT	.	22.0	3.0	23.0	1.0	.	62	.	C|0.500;G|0.500	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	hg19	1	15707218	15707218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FHAD1	NM_052929	exon28	c.G3661A	p.A1221T	TGCAACGCAAGGT	.	86.0	40.0	75.0	0.0	.	78	.	.	Atlas-SNP
EPHA2	1969	hgsc.bcm.edu	hg19	1	16459692	16459692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA2	NM_004431	exon11	c.A2036T	p.E679V	ACGCCCTCTAGGC	.	47.0	25.0	52.0	0.0	.	102	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19433356	19433356	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UBR4	NM_020765	exon82	c.C12210T	p.A4070A	CTTCCAGGCATCA	.	184.0	83.0	255.0	0.0	.	415	.	.	Atlas-SNP
CAMK2N1	55450	hgsc.bcm.edu	hg19	1	20811760	20811760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAMK2N1	NM_018584	exon1	c.C113G	p.A38G	TGCCCGGCGCCGA	.	46.0	17.0	47.0	0.0	.	7	.	.	Atlas-SNP
RAP1GAP	5909	hgsc.bcm.edu	hg19	1	21940198	21940198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAP1GAP	NM_001145658	exon9	c.A589T	p.T197S	ACTTGGTCCTGAG	.	36.0	18.0	54.0	0.0	.	119	.	.	Atlas-SNP
WNT4	54361	hgsc.bcm.edu	hg19	1	22446623	22446623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WNT4	NM_030761	exon5	c.T976C	p.C326R	AGCTGCAGCGTTC	.	33.0	15.0	57.0	0.0	.	33	.	.	Atlas-SNP
ZNF436	80818	hgsc.bcm.edu	hg19	1	23689069	23689069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF436	NM_001077195	exon4	c.A806G	p.Q269R	GTCCTCTGGTGCT	.	114.0	5.0	140.0	0.0	.	49	.	.	Atlas-SNP
ZNF683	257101	hgsc.bcm.edu	hg19	1	26694278	26694278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF683	NM_173574	exon3	c.C125G	p.A42G	CTGCAGGCTGAGA	.	75.0	36.0	107.0	0.0	.	51	.	.	Atlas-SNP
NUDC	10726	hgsc.bcm.edu	hg19	1	27268120	27268120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUDC	NM_006600	exon3	c.A332G	p.E111G	ATGAAGAGGCAGA	.	175.0	15.0	200.0	0.0	.	15	.	.	Atlas-SNP
LAPTM5	7805	hgsc.bcm.edu	hg19	1	31215394	31215394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAPTM5	NM_006762	exon2	c.C90G	p.I30M	GCTCATGATCTGG	.	59.0	27.0	102.0	0.0	.	30	.	.	Atlas-SNP
PEF1	553115	hgsc.bcm.edu	hg19	1	32101091	32101091	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PEF1	NM_012392	exon2	c.A57T	p.G19G	AGGGGCTCCTGGT	.	270.0	106.0	308.0	0.0	.	20	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34174805	34174805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CSMD2,NS,carcinoma,0,1	CSMD2	NM_052896	exon22	c.T3340C	p.F1114L	CAGGAAAGTTGGG	.	97.0	34.0	152.0	1.0	.	946	.	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	hg19	1	34663030	34663030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf94	NM_001134734	exon2	c.A525T	p.R175S	CCCCAGAGCCTCC	.	104.0	46.0	88.0	0.0	.	156	.	.	Atlas-SNP
GRIK3	2899	hgsc.bcm.edu	hg19	1	37315910	37315910	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIK3	NM_000831	exon10	c.1326+2T>C	.	GCTCTTACCAGCA	.	45.0	16.0	53.0	0.0	.	195	.	.	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52761649	52761649	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFYVE9	NM_004799	exon12	c.A3333G	p.A1111A	TCTTGCAGTAAGT	.	102.0	43.0	115.0	0.0	.	131	.	.	Atlas-SNP
ROR1	4919	hgsc.bcm.edu	hg19	1	64515633	64515633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROR1	NM_001083592	exon3	c.T434C	p.V145A	CTGGAGTCTTGTT	.	75.0	26.0	97.0	0.0	.	113	.	.	Atlas-SNP
LRRIQ3	127255	hgsc.bcm.edu	hg19	1	74621535	74621535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRIQ3	NM_001105659	exon4	c.G589A	p.E197K	TTTCCTCTTCATA	.	347.0	136.0	327.0	0.0	.	146	.	.	Atlas-SNP
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74833633	74833633	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001112808	exon15	c.A1609T	p.K537X	AAGATTAAAAGCA	.	332.0	114.0	379.0	0.0	.	.	.	.	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	hg19	1	89848365	89848365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GBP6	NM_198460	exon8	c.A1295G	p.H432R	GAGGGCACAAGCT	.	169.0	54.0	200.0	0.0	.	87	.	.	Atlas-SNP
BRDT	676	hgsc.bcm.edu	hg19	1	92428482	92428482	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRDT	NM_001242806	exon2	c.T171C	p.D57D	TGTGGATGCTGTG	.	128.0	46.0	124.0	0.0	.	133	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94568641	94568641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA4	NM_000350	exon5	c.T500G	p.L167R	TTAATGAGAAATA	.	97.0	33.0	113.0	0.0	.	275	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103453234	103453234	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL11A1	NM_080629	exon30	c.A2493T	p.A831A	TGGGCCTGCTCGA	.	91.0	35.0	113.0	0.0	.	972	.	.	Atlas-SNP
WDR47	22911	hgsc.bcm.edu	hg19	1	109525342	109525342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR47	NM_001142550	exon12	c.G2179A	p.G727S	CTGGGCCTTCCAT	.	138.0	61.0	133.0	0.0	.	56	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109801366	109801366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CELSR2	NM_001408	exon2	c.G3623C	p.R1208P	AGGAGCGCCTATA	.	57.0	25.0	74.0	0.0	.	228	.	.	Atlas-SNP
UBL4B	164153	hgsc.bcm.edu	hg19	1	110655547	110655547	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	UBL4B,right_upper_lobe,carcinoma,0,1	UBL4B	NM_203412	exon1	c.G391T	p.E131X	CACCTGGAGCAGC	.	98.0	37.0	117.0	1.0	.	22	.	.	Atlas-SNP
KCNA2	3737	hgsc.bcm.edu	hg19	1	111146974	111146974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNA2	NM_001204269	exon3	c.A431T	p.E144V	TGAAACTCATTTT	.	95.0	45.0	82.0	0.0	.	61	.	.	Atlas-SNP
KCNA3	3738	hgsc.bcm.edu	hg19	1	111216207	111216207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNA3	NM_002232	exon1	c.G1225T	p.V409F	GGATGACCCCAAT	.	70.0	28.0	92.0	0.0	.	91	.	.	Atlas-SNP
SIKE1	80143	hgsc.bcm.edu	hg19	1	115318966	115318966	+	Splice_Site	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	SIKE1,bladder,carcinoma,0,1	SIKE1	NM_001102396	exon5	c.534+1G>C	.	ATCTTACCTCTAA	.	118.0	9.0	106.0	1.0	.	12	.	.	Atlas-SNP
CD101	9398	hgsc.bcm.edu	hg19	1	117556093	117556093	+	Missense_Mutation	SNP	G	G	T	rs201304832	bycluster;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CD101,NS,lymphoid_neoplasm,0,1	CD101	NM_001256109	exon4	c.G907T	p.V303F	GAACTGGTTTGCC	.	108.0	42.0	136.0	0.0	.	95	.	G|0.999;A|0.001	Atlas-SNP
GPR89B	51463	hgsc.bcm.edu	hg19	1	147408746	147408746	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR89B	NM_016334	exon2	c.A48T	p.L16L	GATACTATTTTTT	.	383.0	87.0	249.0	0.0	.	6	.	.	Atlas-SNP
MTMR11	10903	hgsc.bcm.edu	hg19	1	149902441	149902441	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MTMR11	NM_181873	exon15	c.1249-2A>G	.	TTTAACTGGACAG	.	76.0	11.0	35.0	0.0	.	136	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152081242	152081242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCHH	NM_007113	exon3	c.A4451G	p.D1484G	TTTCTGTCACGCT	.	246.0	49.0	147.0	0.0	.	275	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280562	152280562	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG	NM_002016	exon3	c.A6800T	p.H2267L	CCATGATGGTTTC	.	367.0	71.0	245.0	0.0	.	900	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152329823	152329823	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FLG2	NM_001014342	exon3	c.T439A	p.S147T	CCCTTGAGTGCCC	.	388.0	272.0	266.0	0.0	.	431	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158632708	158632708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTA1	NM_003126	exon17	c.G2248C	p.A750P	ATGCAGCCAGGTC	.	209.0	10.0	148.0	0.0	.	720	.	.	Atlas-SNP
DARC	2532	hgsc.bcm.edu	hg19	1	159176146	159176146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	DARC_ENST00000368121,NS,carcinoma,0,1	DARC	NM_001122951	exon1	c.T923C	p.L308P	TCGCCCTATTCTG	.	160.0	37.0	104.0	0.0	.	76	.	.	Atlas-SNP
LY9	4063	hgsc.bcm.edu	hg19	1	160784465	160784465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LY9	NM_001261457	exon4	c.T986C	p.I329T	TGAAGATAGAGGA	.	265.0	163.0	164.0	1.0	.	115	.	.	Atlas-SNP
FCGR2A	2212	hgsc.bcm.edu	hg19	1	161479767	161479767	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FCGR2A	NM_001136219	exon4	c.C522T	p.I174I	CTCCATCCCACAA	.	1276.0	240.0	853.0	1.0	.	38	.	.	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	hg19	1	171753199	171753199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	METTL13	NM_015935	exon2	c.G473T	p.C158F	ATCTCTGCATCTC	.	190.0	49.0	112.0	0.0	.	67	.	.	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	hg19	1	173526479	173526479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_178527	exon10	c.G1215T	p.M405I	TCCTACCATTTGT	.	445.0	95.0	262.0	0.0	.	.	.	.	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	hg19	1	173842760	173842760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBTB37	NM_032522	exon4	c.A1079T	p.Y360F	CTGTGTATGAATA	.	234.0	38.0	130.0	0.0	.	38	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176927577	176927577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASTN1	NM_004319	exon10	c.G1640A	p.S547N	CTCTTGCTGAGGG	.	278.0	72.0	206.0	0.0	.	314	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177245534	177245534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM5B	NM_021165	exon6	c.T976C	p.S326P	CAGGACTCCTGGG	.	691.0	69.0	495.0	0.0	.	191	.	.	Atlas-SNP
FAM163A	148753	hgsc.bcm.edu	hg19	1	179783192	179783192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM163A	NM_173509	exon5	c.T372G	p.F124L	CTCCTTTGCTCCC	.	356.0	37.0	229.0	0.0	.	24	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181753861	181753861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA1E	NM_001205293	exon41	c.C5535A	p.H1845Q	GCCTCACCTATCC	.	202.0	42.0	152.0	0.0	.	778	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182836133	182836133	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DHX9	NM_001357	exon14	c.A1512T	p.G504G	TCGAGGAATCAGT	.	167.0	35.0	117.0	0.0	.	114	.	.	Atlas-SNP
COLGALT2	23127	hgsc.bcm.edu	hg19	1	183908097	183908097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	GLT25D2,colon,carcinoma,0,2	.	NM_015101	exon12	c.C1679T	p.T560M	TAGTGCGTAGGGT	.	472.0	321.0	277.0	2.0	.	.	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190067337	190067337	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM5C	NM_199051	exon8	c.A2112T	p.L704L	GATCTCTAGTAGT	.	303.0	67.0	147.0	0.0	.	343	.	.	Atlas-SNP
CAMSAP2	23271	hgsc.bcm.edu	hg19	1	200817745	200817745	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_203459	exon11	c.A1848T	p.S616S	TCCTTCAGAAGAT	.	219.0	42.0	80.0	0.0	.	.	.	.	Atlas-SNP
SYT2	127833	hgsc.bcm.edu	hg19	1	202571584	202571584	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYT2	NM_177402	exon5	c.T555A	p.P185P	CTTGTCAGGAAGG	.	132.0	99.0	77.0	0.0	.	51	.	.	Atlas-SNP
FMOD	2331	hgsc.bcm.edu	hg19	1	203316593	203316593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FMOD	NM_002023	exon2	c.A806G	p.K269R	AGCAGCTTGGGCG	.	183.0	36.0	111.0	0.0	.	49	.	.	Atlas-SNP
AVPR1B	553	hgsc.bcm.edu	hg19	1	206230897	206230897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AVPR1B	NM_000707	exon2	c.C1030A	p.H344N	AACAGCCACCTGT	.	257.0	72.0	138.0	0.0	.	47	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207646133	207646133	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CR2	NM_001006658	exon10	c.A1587T	p.P529P	CCCACCACCCCCT	.	135.0	38.0	89.0	0.0	.	164	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209789949	209789949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAMB3	NM_000228	exon22	c.A3249T	p.Q1083H	ATACTTTTGTTTT	.	281.0	50.0	205.0	0.0	.	136	.	.	Atlas-SNP
DIEXF	27042	hgsc.bcm.edu	hg19	1	210015611	210015611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DIEXF	NM_014388	exon9	c.A1487G	p.H496R	CAAAGCATTTGAT	.	162.0	44.0	93.0	0.0	.	97	.	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	hg19	1	211192594	211192594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	KCNH1,NS,carcinoma,0,1	KCNH1	NM_172362	exon6	c.T563A	p.L188Q	AGCTGTAGGACCT	.	58.0	29.0	25.0	0.0	.	199	.	.	Atlas-SNP
SLC30A1	7779	hgsc.bcm.edu	hg19	1	211751602	211751602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC30A1	NM_021194	exon1	c.G353T	p.G118V	CCGACCCCAAGGA	.	205.0	43.0	105.0	0.0	.	27	.	.	Atlas-SNP
C1orf227	149643	hgsc.bcm.edu	hg19	1	213009317	213009317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf227	NM_001024601	exon2	c.A175C	p.T59P	TATCAGTAAAGGA	.	302.0	213.0	204.0	1.0	.	9	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225270296	225270296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH14	NM_001373	exon20	c.C3182T	p.T1061I	TGGTAACAGAGTT	.	462.0	102.0	261.0	0.0	.	300	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228462464	228462464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OBSCN	NM_001271223	exon24	c.G7000T	p.D2334Y	ATCTCAGACCTGG	.	96.0	16.0	73.0	0.0	.	2142	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228559946	228559946	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OBSCN	NM_001271223	exon105	c.A24338T	p.E8113V	AGGCTGAGGATCT	.	192.0	39.0	113.0	0.0	.	2142	.	.	Atlas-SNP
TSNAX	7257	hgsc.bcm.edu	hg19	1	231700443	231700443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TSNAX	NM_005999	exon6	c.G665T	p.R222L	TTTTACGTCAGGT	.	359.0	240.0	237.0	0.0	.	14	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	231829654	231829654	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DISC1	NM_001164541	exon2	c.A150T	p.T50T	CTCGACAGGGCCT	.	134.0	25.0	93.0	0.0	.	207	.	.	Atlas-SNP
C1orf101	257044	hgsc.bcm.edu	hg19	1	244681971	244681971	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C1orf101	NM_173807	exon8	c.T507G	p.V169V	AAAAGTTTATTCT	.	623.0	137.0	387.0	0.0	.	158	.	.	Atlas-SNP
OR2G3	81469	hgsc.bcm.edu	hg19	1	247769234	247769234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2G3	NM_001001914	exon1	c.C347A	p.A116D	TCTTGGCTGACAT	.	288.0	202.0	186.0	1.0	.	108	.	.	Atlas-SNP
OR2M3	127062	hgsc.bcm.edu	hg19	1	248366439	248366439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2M3	NM_001004689	exon1	c.C70T	p.H24Y	CCCACCCACACCT	.	563.0	114.0	339.0	0.0	.	116	.	.	Atlas-SNP
OR2G6	391211	hgsc.bcm.edu	hg19	1	248685871	248685871	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2G6	NM_001013355	exon1	c.T924C	p.S308S	GGGTAGTGCTGCT	.	74.0	8.0	37.0	0.0	.	124	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1983303	1983303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYT1L	NM_015025	exon7	c.G79T	p.E27X	ACAGCTCTTGTAT	.	92.0	32.0	141.0	0.0	.	241	.	.	Atlas-SNP
OSR1	130497	hgsc.bcm.edu	hg19	2	19552136	19552136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OSR1	NM_145260	exon3	c.A701G	p.Q234R	CACTCTTGACACT	.	115.0	48.0	108.0	0.0	.	29	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21229513	21229513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APOB	NM_000384	exon26	c.T10227A	p.S3409R	GTTATGACTACCC	.	109.0	48.0	103.0	0.0	.	761	.	.	Atlas-SNP
KLHL29	114818	hgsc.bcm.edu	hg19	2	23918605	23918605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLHL29	NM_052920	exon9	c.T1655A	p.L552Q	GGGACCTGGTGAA	.	64.0	21.0	93.0	0.0	.	47	.	.	Atlas-SNP
EMILIN1	11117	hgsc.bcm.edu	hg19	2	27302028	27302028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMILIN1	NM_007046	exon1	c.A95G	p.Y32C	GCCTCTACACAGG	.	47.0	16.0	70.0	0.0	.	75	.	.	Atlas-SNP
WDR43	23160	hgsc.bcm.edu	hg19	2	29169340	29169340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR43	NM_015131	exon17	c.A1829T	p.D610V	CTGATGATGAAAT	.	126.0	44.0	120.0	0.0	.	38	.	.	Atlas-SNP
QPCT	25797	hgsc.bcm.edu	hg19	2	37599570	37599570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	QPCT	NM_012413	exon6	c.T895A	p.Y299N	TACAGTTATGGAG	.	99.0	41.0	119.0	0.0	.	34	.	.	Atlas-SNP
CAMKMT	79823	hgsc.bcm.edu	hg19	2	44933426	44933426	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAMKMT	NM_024766	exon5	c.G438A	p.R146R	TTTCAGGGCCCTT	.	90.0	40.0	94.0	0.0	.	20	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50149221	50149221	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	NRXN1_ENST00000536085,NS,carcinoma,0,3	NRXN1	NM_001135659	exon24	c.C4505A	p.S1502X	TGGTATGAGCCTT	.	125.0	53.0	126.0	0.0	.	1118	.	.	Atlas-SNP
CCT4	10575	hgsc.bcm.edu	hg19	2	62112155	62112155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCT4	NM_001256721	exon2	c.G180C	p.M60I	CTTTACCATTTTA	.	105.0	51.0	124.0	0.0	.	38	.	.	Atlas-SNP
RAB11FIP5	26056	hgsc.bcm.edu	hg19	2	73315575	73315575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAB11FIP5	NM_015470	exon3	c.A1171G	p.S391G	TACGACTGCCTCT	.	39.0	15.0	39.0	0.0	.	66	.	.	Atlas-SNP
SEMA4F	10505	hgsc.bcm.edu	hg19	2	74883712	74883712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEMA4F	NM_001271662	exon2	c.C197A	p.S66Y	ATTACTCTGTTCT	.	119.0	52.0	148.0	0.0	.	89	.	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98797635	98797635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VWA3B	NM_144992	exon9	c.T1271C	p.I424T	TGGATATAAAAGC	.	125.0	48.0	196.0	0.0	.	138	.	.	Atlas-SNP
IL18RAP	8807	hgsc.bcm.edu	hg19	2	103040730	103040730	+	Missense_Mutation	SNP	A	A	T	rs138125296	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL18RAP	NM_003853	exon5	c.A435T	p.L145F	GATTTTAGAAGTT	.	177.0	79.0	161.0	0.0	.	102	.	A|1.000;G|0.000	Atlas-SNP
GPR45	11250	hgsc.bcm.edu	hg19	2	105858393	105858393	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR45	NM_007227	exon1	c.C78A	p.S26S	GGGGTCCACCCAG	.	121.0	50.0	132.0	0.0	.	73	.	.	Atlas-SNP
ACOXL	55289	hgsc.bcm.edu	hg19	2	111556610	111556610	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACOXL	NM_001142807	exon7	c.T480A	p.V160V	CATCGTTCCTGTC	.	118.0	62.0	115.0	0.0	.	93	.	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116593732	116593732	+	Splice_Site	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DPP10	NM_020868	exon22	c.1951-1G>T	.	CCCCCAGGGTTAT	.	125.0	46.0	127.0	0.0	.	415	.	.	Atlas-SNP
STEAP3	55240	hgsc.bcm.edu	hg19	2	120020691	120020691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STEAP3	NM_182915	exon6	c.G1274T	p.W425L	ACGGCTGGACCCG	.	47.0	21.0	41.0	0.0	.	44	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121743964	121743964	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	GLI2,NS,carcinoma,0,1	GLI2	NM_005270	exon12	c.G2067T	p.G689G	GCCCGGGAGCCTG	.	138.0	66.0	160.0	0.0	.	187	.	.	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131803692	131803692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF4	NM_015320	exon14	c.T2003C	p.L668P	TGGTGCTGGCGGA	.	50.0	13.0	57.0	0.0	.	89	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152522831	152522831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEB	NM_004543	exon41	c.T4804A	p.Y1602N	TCATGTAGTGAAC	.	86.0	34.0	93.0	0.0	.	1697	.	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160087091	160087091	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TANC1	NM_033394	exon27	c.C5154A	p.P1718P	CAGACCCCGCAAC	.	111.0	43.0	135.0	0.0	.	157	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166897949	166897949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN1A	NM_001165963	exon13	c.C2207T	p.P736L	CAACAGGGTGGGC	.	73.0	30.0	72.0	0.0	.	641	.	.	Atlas-SNP
NOSTRIN	115677	hgsc.bcm.edu	hg19	2	169681160	169681160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOSTRIN	NM_001039724	exon3	c.A130C	p.S44R	GAAATTAGCTATG	.	600.0	221.0	701.0	0.0	.	68	.	.	Atlas-SNP
PPIG	9360	hgsc.bcm.edu	hg19	2	170465241	170465241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPIG	NM_004792	exon7	c.A350G	p.K117R	GAGGGAAGGATAC	.	356.0	154.0	378.0	0.0	.	100	.	.	Atlas-SNP
CDCA7	83879	hgsc.bcm.edu	hg19	2	174230178	174230178	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDCA7	NM_031942	exon7	c.895-2A>C	.	TAATGCAGGAAGA	.	65.0	34.0	80.0	0.0	.	48	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179431803	179431803	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon326	c.A79056G	p.L26352L	ACCTTCTAAGAGT	.	119.0	43.0	120.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179587117	179587117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTN	NM_001267550	exon77	c.A22397C	p.Q7466P	GAAGTCTGTAGAT	.	98.0	38.0	109.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196913052	196913052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH7	NM_018897	exon4	c.A218T	p.E73V	AATGGTTCTGGAC	.	59.0	25.0	61.0	0.0	.	512	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197183894	197183894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECW2	NM_020760	exon9	c.G1720A	p.D574N	GCTGATCTACCTC	.	101.0	39.0	108.0	0.0	.	239	.	.	Atlas-SNP
ALS2CR11	151254	hgsc.bcm.edu	hg19	2	202400648	202400648	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALS2CR11	NM_001168217	exon13	c.T1602A	p.A534A	CCTTTCAGCTAAG	.	28.0	12.0	33.0	0.0	.	194	.	.	Atlas-SNP
ALS2	57679	hgsc.bcm.edu	hg19	2	202593826	202593826	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALS2	NM_020919	exon14	c.G2661A	p.K887K	TGCTTCCTTCCTT	.	162.0	86.0	180.0	0.0	.	172	.	.	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	hg19	2	206036933	206036933	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PARD3B	NM_057177	exon12	c.1621-2A>T	.	TGCCTTAGGATGG	.	128.0	50.0	148.0	0.0	.	314	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210557752	210557752	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAP2	NM_002374	exon7	c.T858A	p.P286P	ATCTCCTGGCCCT	.	141.0	60.0	165.0	0.0	.	372	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210805966	210805966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UNC80	NM_032504	exon43	c.T6470C	p.L2157P	TTGGCCTCGACAC	.	112.0	52.0	135.0	0.0	.	280	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215833480	215833480	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA12	NM_173076	exon38	c.T5742C	p.D1914D	TGTTATATCAAAA	.	122.0	44.0	109.0	0.0	.	368	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215914355	215914355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCA12	NM_173076	exon6	c.T688A	p.S230T	CCTGGGAGAACTG	.	95.0	43.0	111.0	0.0	.	368	.	.	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218750502	218750502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNS1	NM_022648	exon13	c.A706G	p.I236V	GCTCGATGGTGAT	.	74.0	29.0	72.0	0.0	.	251	.	.	Atlas-SNP
ASIC4	55515	hgsc.bcm.edu	hg19	2	220396495	220396495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_182847	exon2	c.G979T	p.G327W	CGCTATGGGAAGT	.	292.0	113.0	409.0	1.0	.	.	.	.	Atlas-SNP
SERPINE2	5270	hgsc.bcm.edu	hg19	2	224866418	224866418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SERPINE2	NM_001136530	exon2	c.T236A	p.L79Q	GCCCCCAGCTGAA	.	63.0	27.0	63.0	0.0	.	103	.	.	Atlas-SNP
COL4A4	1286	hgsc.bcm.edu	hg19	2	227886777	227886777	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A4	NM_000092	exon44	c.C4203T	p.G1401G	TGAGGGGCCTCTC	.	247.0	105.0	240.0	1.0	.	215	.	.	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	hg19	2	242380941	242380941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FARP2	NM_014808	exon13	c.C1381T	p.L461F	CAGCCCCTCGGGC	.	89.0	40.0	96.0	0.0	.	92	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12858225	12858225	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CAND2	NM_001162499	exon10	c.T1794A	p.L598L	CCACCTTGTAGGC	.	124.0	105.0	149.0	1.0	.	138	.	.	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13401819	13401819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUP210	NM_024923	exon15	c.A2105G	p.N702S	TGATAATTCCGGG	.	115.0	101.0	161.0	0.0	.	182	.	.	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14860937	14860937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FGD5	NM_152536	exon1	c.C359A	p.S120X	AGGATTCAGTGGC	.	187.0	158.0	204.0	1.0	.	248	.	.	Atlas-SNP
ITGA9	3680	hgsc.bcm.edu	hg19	3	37774280	37774280	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITGA9	NM_002207	exon19	c.A2145C	p.S715S	GAGGTCAAAGTCA	.	74.0	63.0	92.0	0.0	.	98	.	.	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	hg19	3	38766700	38766700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN10A	NM_006514	exon17	c.T3193G	p.W1065G	CTTTCCACGTCTC	.	60.0	45.0	140.0	1.0	.	359	.	.	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	hg19	3	38926834	38926834	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SCN11A	NM_014139	exon17	c.T3009C	p.F1003F	CCATCCAAAGCCA	.	118.0	102.0	144.0	1.0	.	296	.	.	Atlas-SNP
PTH1R	5745	hgsc.bcm.edu	hg19	3	46937344	46937344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTH1R	NM_001184744	exon4	c.G298T	p.G100C	CCCACTGGCAGCA	.	100.0	90.0	132.0	1.0	.	49	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47042832	47042832	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBEAL2	NM_015175	exon29	c.G4548T	p.L1516L	GGTCCTGGCCAGC	.	41.0	36.0	56.0	0.0	.	267	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52554842	52554842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STAB1	NM_015136	exon55	c.G5729T	p.R1910L	GCTGGCGCTTCTA	.	42.0	32.0	54.0	0.0	.	178	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53700544	53700544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA1D	NM_001128840	exon7	c.G1098A	p.W366X	GGGCTGGACAGAT	.	128.0	6.0	123.0	0.0	.	324	.	.	Atlas-SNP
LRTM1	57408	hgsc.bcm.edu	hg19	3	54958771	54958771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRTM1	NM_020678	exon2	c.A479T	p.Q160L	TCAAGCTGCTGAA	.	140.0	123.0	187.0	0.0	.	52	.	.	Atlas-SNP
KBTBD8	84541	hgsc.bcm.edu	hg19	3	67049479	67049479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KBTBD8	NM_032505	exon2	c.C91T	p.H31Y	CCCTTCCATGCTT	.	271.0	93.0	208.0	0.0	.	101	.	.	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69097054	69097054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMF1	NM_007114	exon2	c.A802G	p.I268V	CACTTATTACACT	.	68.0	30.0	58.0	0.0	.	77	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78684981	78684981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO1	NM_002941	exon23	c.G3315T	p.Q1105H	TTGTTTCTGCTGT	.	326.0	95.0	275.0	0.0	.	833	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78711213	78711213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROBO1	NM_002941	exon15	c.T2018A	p.L673Q	TTTCCCAGCTCTC	.	291.0	86.0	232.0	0.0	.	833	.	.	Atlas-SNP
ZBED2	79413	hgsc.bcm.edu	hg19	3	111312691	111312691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBED2	NM_024508	exon2	c.C358A	p.Q120K	GGCGCTGCCCAGC	.	67.0	30.0	70.0	0.0	.	22	.	.	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	hg19	3	111394182	111394182	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCXD2	NM_001185106	exon1	c.C90A	p.V30V	GGAGGTCTGCAAT	.	213.0	91.0	266.0	0.0	.	36	.	.	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112358178	112358178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC80	NM_199511	exon2	c.A575G	p.Q192R	CCTGCCTGGTGGA	.	130.0	63.0	126.0	0.0	.	100	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112993376	112993376	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BOC	NM_033254	exon9	c.A1389T	p.P463P	GTGTCCAGGAGAG	.	129.0	61.0	182.0	0.0	.	139	.	.	Atlas-SNP
C3orf30	152405	hgsc.bcm.edu	hg19	3	118865983	118865983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf30	NM_152539	exon1	c.A947G	p.E316G	CCACTGAACTAGC	.	136.0	57.0	130.0	0.0	.	64	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121208148	121208148	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POLQ	NM_199420	exon16	c.G3630A	p.Q1210Q	ATTTTTCTGTTTG	.	121.0	53.0	109.0	0.0	.	273	.	.	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127642796	127642796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KBTBD12	NM_207335	exon1	c.A892T	p.S298C	GATGCCAGTTTTT	.	131.0	60.0	162.0	0.0	.	41	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130290136	130290136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL6A6	NM_001102608	exon6	c.T2876G	p.M959R	TAGCCATGGCAGG	.	193.0	80.0	240.0	0.0	.	497	.	.	Atlas-SNP
ACPP	55	hgsc.bcm.edu	hg19	3	132075574	132075574	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACPP	NM_001099	exon10	c.A1013T	p.E338V	AGCACGAGCCGTA	.	99.0	26.0	158.0	0.0	.	118	.	.	Atlas-SNP
C3orf36	80111	hgsc.bcm.edu	hg19	3	133647332	133647332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C3orf36	NM_025041	exon1	c.T316C	p.C106R	GTGAGCAAGGTGG	.	134.0	45.0	175.0	0.0	.	13	.	.	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142145680	142145680	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	XRN1	NM_001042604	exon3	c.A312T	p.S104S	CTTTGCTGACCTT	.	68.0	40.0	94.0	0.0	.	138	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151160801	151160801	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IGSF10	NM_178822	exon5	c.A5934G	p.P1978P	CTTGGATGGTAAC	.	94.0	38.0	108.0	0.0	.	279	.	.	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	157031464	157031464	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VEPH1	NM_001167912	exon11	c.G1956T	p.G652G	AGCACCCCCTGCC	.	91.0	33.0	103.0	0.0	.	129	.	.	Atlas-SNP
B3GALNT1	8706	hgsc.bcm.edu	hg19	3	160803874	160803874	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	B3GALNT1	NM_001038628	exon8	c.T669C	p.H223H	AGAAATATGGGTT	.	69.0	25.0	84.0	0.0	.	34	.	.	Atlas-SNP
SERPINI2	5276	hgsc.bcm.edu	hg19	3	167183368	167183368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SERPINI2	NM_001012303	exon5	c.A602T	p.Q201L	AATTTCTGTTTCC	.	102.0	43.0	106.0	0.0	.	85	.	.	Atlas-SNP
PLD1	5337	hgsc.bcm.edu	hg19	3	171395376	171395376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLD1	NM_002662	exon17	c.A1976G	p.Q659R	TCAAGTTGAACCC	.	113.0	56.0	147.0	0.0	.	134	.	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	hg19	3	183689367	183689367	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCC5	NM_005688	exon11	c.A1745T	p.D582V	TCCAGATCGATGC	.	52.0	21.0	108.0	0.0	.	142	.	.	Atlas-SNP
LEPREL1	55214	hgsc.bcm.edu	hg19	3	189690681	189690681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LEPREL1	NM_018192	exon11	c.T1681C	p.C561R	TTCGGCAGACCAT	.	250.0	106.0	268.0	0.0	.	95	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193332727	193332727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OPA1	NM_130832	exon2	c.A248T	p.Q83L	GCTACCAGCCTCG	.	246.0	17.0	280.0	0.0	.	79	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193374929	193374929	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OPA1	NM_130837	exon23	c.G2239T	p.E747X	GGGAAAGAGCATG	.	131.0	64.0	191.0	0.0	.	79	.	.	Atlas-SNP
ACAP2	23527	hgsc.bcm.edu	hg19	3	195112843	195112843	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACAP2	NM_012287	exon2	c.A87T	p.A29A	CAATTCTGCCACA	.	775.0	294.0	806.0	1.0	.	72	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5578129	5578129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EVC2	NM_147127	exon18	c.C3110T	p.A1037V	TGGGCTGCCTCCT	.	72.0	37.0	62.0	0.0	.	202	.	.	Atlas-SNP
ABLIM2	84448	hgsc.bcm.edu	hg19	4	8029484	8029484	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABLIM2	NM_001130083	exon13	c.1267+2T>A	.	TGCCTTACCTCGG	.	121.0	43.0	106.0	0.0	.	59	.	.	Atlas-SNP
FGFBP1	9982	hgsc.bcm.edu	hg19	4	15938116	15938116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FGFBP1	NM_005130	exon3	c.A140T	p.Q47L	TTAATCTGGGTGT	.	219.0	128.0	149.0	0.0	.	26	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20255500	20255500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLIT2	NM_004787	exon1	c.A62G	p.N21S	TCCTGAACAAGGT	.	42.0	11.0	17.0	0.0	.	290	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20525440	20525440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLIT2	NM_004787	exon13	c.C1188A	p.H396Q	TCTCCACAACTTG	.	251.0	15.0	208.0	0.0	.	290	.	.	Atlas-SNP
SEPSECS	51091	hgsc.bcm.edu	hg19	4	25160667	25160667	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEPSECS	NM_016955	exon2	c.A177C	p.A59A	CATGATTGCAAGT	.	265.0	154.0	199.0	0.0	.	55	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55564702	55564702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	KIT,NS,haematopoietic_neoplasm,0,1	KIT	NM_000222	exon3	c.C590A	p.S197X	TGCTGTCGGAAAA	.	75.0	34.0	100.0	0.0	.	7396	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55973948	55973948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KDR	NM_002253	exon10	c.C1368G	p.I456M	CCAGTGGATGTGA	.	115.0	43.0	154.0	0.0	.	307	.	.	Atlas-SNP
AASDH	132949	hgsc.bcm.edu	hg19	4	57250311	57250311	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AASDH	NM_181806	exon2	c.A155T	p.H52L	TCACAGTGTAACA	.	235.0	92.0	253.0	0.0	.	101	.	.	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	hg19	4	66467379	66467379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon3	c.A890T	p.E297V	TTTTTCTCTTCAT	.	55.0	23.0	58.0	0.0	.	315	.	.	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	hg19	4	66467935	66467935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHA5	NM_004439	exon3	c.T334A	p.W112R	AAAGCCAGTTATT	.	50.0	22.0	63.0	0.0	.	315	.	.	Atlas-SNP
TMPRSS11A	339967	hgsc.bcm.edu	hg19	4	68780363	68780363	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMPRSS11A	NM_182606	exon9	c.T1047C	p.D349D	TTTTATATCATTG	.	235.0	30.0	251.0	0.0	.	74	.	.	Atlas-SNP
TMPRSS11A	339967	hgsc.bcm.edu	hg19	4	68795630	68795630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMPRSS11A	NM_182606	exon5	c.T458C	p.L153S	ATTGGCAAGGCTC	.	165.0	80.0	213.0	0.0	.	74	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87732253	87732253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPN13	NM_080685	exon47	c.C7369A	p.Q2457K	ATGGTTCAGACAG	.	42.0	12.0	46.0	0.0	.	203	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91229854	91229854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001145065	exon2	c.A419G	p.E140G	AAAAAGAGCACTC	.	126.0	56.0	131.0	0.0	.	.	.	.	Atlas-SNP
BANK1	55024	hgsc.bcm.edu	hg19	4	102783820	102783820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BANK1	NM_017935	exon4	c.A762T	p.L254F	AGCTTTAGGTAAG	.	157.0	64.0	192.0	0.0	.	95	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110904598	110904598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EGF	NM_001963	exon16	c.A2392G	p.N798D	CTAAAGAACCAAG	.	111.0	56.0	121.0	0.0	.	113	.	.	Atlas-SNP
PABPC4L	132430	hgsc.bcm.edu	hg19	4	135121999	135121999	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PABPC4L	NM_001114734	exon2	c.T350A	p.L117X	AGCTGCAAGAAGT	.	71.0	31.0	78.0	0.0	.	60	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	hg19	4	140651774	140651774	+	Silent	SNP	G	G	T	rs372122289	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAML3	NM_018717	exon4	c.C2115A	p.S705S	CACGGAGGACTGC	.	112.0	65.0	97.0	0.0	.	192	.	.	Atlas-SNP
ZNF330	27309	hgsc.bcm.edu	hg19	4	142145639	142145639	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF330	NM_014487	exon3	c.121-2A>T	.	TGTTACAGGAATG	.	354.0	156.0	349.0	0.0	.	31	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	142949992	142949992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	INPP4B	NM_003866	exon27	c.G2718T	p.M906I	GAAAGCCATCAGC	.	89.0	47.0	115.0	0.0	.	132	.	.	Atlas-SNP
MAB21L2	10586	hgsc.bcm.edu	hg19	4	151504564	151504564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAB21L2	NM_006439	exon1	c.T383C	p.I128T	GTAAGATCCGCTC	.	58.0	20.0	55.0	0.0	.	53	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155156385	155156385	+	Missense_Mutation	SNP	T	T	A	rs147174513		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCHS2	NM_017639	exon25	c.A8054T	p.D2685V	AGCTGGTCTGAGT	.	101.0	44.0	94.0	0.0	.	594	.	T|1.000;A|0.000	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155226268	155226268	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCHS2	NM_017639	exon16	c.A4011G	p.Q1337Q	GACTTCTTGAATT	.	95.0	37.0	99.0	0.0	.	594	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183659668	183659668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001080477	exon17	c.A3350G	p.D1117G	CATTAGATAAACA	.	86.0	41.0	88.0	0.0	.	.	.	.	Atlas-SNP
TLR3	7098	hgsc.bcm.edu	hg19	4	186997908	186997908	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TLR3	NM_003265	exon2	c.A135C	p.V45V	TCAGGTACCCGAT	.	105.0	41.0	136.0	0.0	.	83	.	.	Atlas-SNP
SLC6A3	6531	hgsc.bcm.edu	hg19	5	1409895	1409895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A3	NM_001044	exon10	c.C1339A	p.L447I	TGAAGAGCTCACG	.	51.0	29.0	74.0	0.0	.	102	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3600372	3600372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRX1	NM_024337	exon2	c.C1310A	p.P437Q	CGCTCCCAGGTAC	.	37.0	17.0	37.0	0.0	.	106	.	.	Atlas-SNP
C5orf22	55322	hgsc.bcm.edu	hg19	5	31534522	31534522	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C5orf22	NM_018356	exon2	c.T225C	p.F75F	ACTCTTTGGGTAA	.	92.0	23.0	111.0	0.0	.	48	.	.	Atlas-SNP
BRIX1	55299	hgsc.bcm.edu	hg19	5	34922851	34922851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRIX1	NM_018321	exon6	c.G488A	p.R163Q	GTTCTCGGCCCCT	.	381.0	136.0	419.0	0.0	.	21	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37206332	37206332	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C5orf42	NM_023073	exon17	c.A3116T	p.Q1039L	AACAGCTGGAAAG	.	306.0	30.0	343.0	0.0	.	422	.	.	Atlas-SNP
WDR70	55100	hgsc.bcm.edu	hg19	5	37721261	37721261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR70	NM_018034	exon14	c.G1461A	p.M487I	GATCATGGTTGGA	.	153.0	63.0	176.0	0.0	.	76	.	.	Atlas-SNP
DEPDC1B	55789	hgsc.bcm.edu	hg19	5	59899225	59899225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DEPDC1B	NM_001145208	exon9	c.G1235T	p.R412I	TGGACTCTTCGTA	.	69.0	22.0	81.0	0.0	.	56	.	.	Atlas-SNP
CARTPT	9607	hgsc.bcm.edu	hg19	5	71016426	71016426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CARTPT	NM_004291	exon3	c.T335C	p.L112P	CCTTCCTCCTGAA	.	88.0	42.0	114.0	0.0	.	10	.	.	Atlas-SNP
MRPS27	23107	hgsc.bcm.edu	hg19	5	71519592	71519592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MRPS27	NM_015084	exon10	c.A923T	p.Q308L	GACCCCTGGTTGT	.	97.0	48.0	121.0	0.0	.	23	.	.	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	hg19	5	72188978	72188978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNPO1	NM_002270	exon16	c.G1801T	p.V601F	TCTTCAGTTGCCA	.	104.0	45.0	80.0	0.0	.	90	.	.	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	hg19	5	72201205	72201205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNPO1	NM_002270	exon24	c.A2665G	p.K889E	CCCTTAAAAGAGC	.	75.0	26.0	77.0	0.0	.	90	.	.	Atlas-SNP
BTF3	689	hgsc.bcm.edu	hg19	5	72798773	72798773	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BTF3	NM_001037637	exon4	c.C348A	p.I116I	AGTGATCCACTTT	.	36.0	15.0	42.0	0.0	.	10	.	.	Atlas-SNP
UTP15	84135	hgsc.bcm.edu	hg19	5	72868323	72868323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UTP15	NM_032175	exon7	c.A683G	p.Y228C	GTCGTTATGTTAA	.	143.0	56.0	173.0	0.0	.	30	.	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	hg19	5	93989111	93989111	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANKRD32	NM_032290	exon8	c.A1017T	p.I339I	GCACATATATAAT	.	449.0	201.0	488.0	0.0	.	117	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128863439	128863439	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS19	NM_133638	exon5	c.1069-2A>T	.	GTTTTTAGGTATT	.	247.0	104.0	315.0	1.0	.	216	.	.	Atlas-SNP
FAM13B	51306	hgsc.bcm.edu	hg19	5	137284750	137284750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM13B	NM_001101800	exon17	c.A1988G	p.K663R	ATGACCTTGGGTT	.	77.0	35.0	63.0	0.0	.	46	.	.	Atlas-SNP
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140308412	140308412	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHAC1	NM_031882	exon1	c.A1935G	p.P645P	CCCACCACTTTCC	.	74.0	23.0	74.0	0.0	.	141	.	.	Atlas-SNP
PCDHB6	56130	hgsc.bcm.edu	hg19	5	140531986	140531986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB6	NM_018939	exon1	c.G2148T	p.R716S	GAGCAGGGCGGCC	.	45.0	22.0	57.0	0.0	.	161	.	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140572771	140572771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDHB10	NM_018930	exon1	c.G646T	p.D216Y	GCGCTGGATGGTG	.	133.0	51.0	147.0	0.0	.	177	.	.	Atlas-SNP
GRXCR2	643226	hgsc.bcm.edu	hg19	5	145239349	145239349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRXCR2	NM_001080516	exon3	c.T694A	p.C232S	CAGGGCACCTCAG	.	213.0	11.0	258.0	0.0	.	32	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150930189	150930189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	FAT2,colon,carcinoma,0,1	FAT2	NM_001447	exon7	c.C4540T	p.L1514F	AGCCGAGGTCCAA	.	68.0	29.0	79.0	0.0	.	465	.	.	Atlas-SNP
GEMIN5	25929	hgsc.bcm.edu	hg19	5	154311783	154311783	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GEMIN5	NM_015465	exon4	c.T537C	p.I179I	GATGTCAATTATC	.	158.0	70.0	155.0	0.0	.	120	.	.	Atlas-SNP
FAM71B	153745	hgsc.bcm.edu	hg19	5	156590341	156590341	+	Missense_Mutation	SNP	G	G	T	rs200982218	by1000genomes;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	FAM71B,NS,carcinoma,0,1	FAM71B	NM_130899	exon2	c.C935A	p.A312E	GCCAGCGCTGTGG	.	53.0	29.0	52.0	0.0	.	145	.	G|1.000;A|0.000	Atlas-SNP
ADRA1B	147	hgsc.bcm.edu	hg19	5	159344340	159344340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADRA1B	NM_000679	exon1	c.G428A	p.R143H	TCGATCGCTACAT	.	56.0	25.0	60.0	0.0	.	39	.	.	Atlas-SNP
STK10	6793	hgsc.bcm.edu	hg19	5	171509351	171509351	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STK10	NM_005990	exon12	c.G1968A	p.Q656Q	TTTGAGCTGCTCT	.	67.0	27.0	100.0	0.0	.	100	.	.	Atlas-SNP
HRH2	3274	hgsc.bcm.edu	hg19	5	175112498	175112498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HRH2	NM_001131055	exon3	c.A1163T	p.H388L	ACATTCATCCAAT	.	207.0	87.0	284.0	1.0	.	108	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178548746	178548746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADAMTS2	NM_014244	exon21	c.A3094T	p.I1032F	CTGAGATGTTTCC	.	67.0	23.0	84.0	0.0	.	190	.	.	Atlas-SNP
TUBB2B	347733	hgsc.bcm.edu	hg19	6	3227741	3227741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TUBB2B	NM_178012	exon1	c.G37T	p.G13C	GGTTGCCGCACTG	.	37.0	11.0	21.0	0.0	.	25	.	.	Atlas-SNP
PRPF4B	8899	hgsc.bcm.edu	hg19	6	4057278	4057278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRPF4B	NM_003913	exon13	c.A2590G	p.K864E	ATAGGTAAAAGCT	.	122.0	25.0	64.0	0.0	.	140	.	.	Atlas-SNP
EEF1E1	9521	hgsc.bcm.edu	hg19	6	8097609	8097609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EEF1E1	NM_001135650	exon2	c.T179C	p.L60S	CCCAGCAAATATT	.	227.0	60.0	150.0	0.0	.	11	.	.	Atlas-SNP
SIRT5	23408	hgsc.bcm.edu	hg19	6	13588600	13588600	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIRT5	NM_012241	exon4	c.G153A	p.K51K	AGCAAAGCACATA	.	367.0	86.0	173.0	0.0	.	45	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17706588	17706588	+	Missense_Mutation	SNP	C	C	A	rs373196566	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NUP153	NM_005124	exon1	c.G31T	p.G11C	CACCGCCCCCTCC	.	87.0	9.0	57.0	0.0	.	116	.	.	Atlas-SNP
PRL	5617	hgsc.bcm.edu	hg19	6	22287693	22287693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRL	NM_000948	exon5	c.C622A	p.H208N	TTTTATGTGAATC	.	143.0	43.0	63.0	0.0	.	41	.	.	Atlas-SNP
HIST1H2BJ	8970	hgsc.bcm.edu	hg19	6	27100194	27100194	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	HIST1H2BJ,NS,carcinoma,0,1	HIST1H2BJ	NM_021058	exon1	c.G336T	p.V112V	CTCGGACACGGCG	.	174.0	34.0	93.0	0.0	.	21	.	.	Atlas-SNP
POM121L2	94026	hgsc.bcm.edu	hg19	6	27279131	27279131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	POM121L2	NM_033482	exon1	c.T819A	p.S273R	GGGAACACTTCTC	.	152.0	30.0	101.0	0.0	.	61	.	.	Atlas-SNP
ZSCAN23	222696	hgsc.bcm.edu	hg19	6	28402633	28402633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZSCAN23	NM_001012455	exon4	c.A779G	p.Q260R	GAATTCTGGGTGA	.	275.0	66.0	148.0	0.0	.	18	.	.	Atlas-SNP
ZNF311	282890	hgsc.bcm.edu	hg19	6	28962885	28962885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF311	NM_001010877	exon7	c.A1894G	p.R632G	GTTTTCTTTTCTT	.	208.0	38.0	130.0	0.0	.	59	.	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29591692	29591692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABBR1	NM_001470	exon7	c.C767A	p.A256D	CTAGCAGCCTCAG	.	278.0	57.0	215.0	0.0	.	95	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	hg19	6	30955854	30955854	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC21	NM_001010909	exon3	c.A1584C	p.P528P	TGGTCCAGGCCCT	.	255.0	42.0	189.0	0.0	.	98	.	.	Atlas-SNP
C6orf47	57827	hgsc.bcm.edu	hg19	6	31627616	31627616	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C6orf47	NM_021184	exon1	c.G109T	p.E37X	AATTCTCCGAGGA	.	247.0	47.0	163.0	0.0	.	15	.	.	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31735467	31735467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_025258	exon11	c.G1568T	p.G523V	AGCAGCCCATCCA	.	190.0	42.0	108.0	0.0	.	.	.	.	Atlas-SNP
SLC44A4	80736	hgsc.bcm.edu	hg19	6	31839119	31839119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	SLC44A4,NS,carcinoma,0,1	SLC44A4	NM_025257	exon9	c.T673G	p.F225V	GGGCAAAATCTTC	.	168.0	7.0	117.0	0.0	.	67	.	.	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	hg19	6	34003458	34003458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM4	NM_000841	exon9	c.A2429T	p.Q810L	GCCGACTGCGAGG	.	377.0	69.0	228.0	0.0	.	317	.	.	Atlas-SNP
ZNF76	7629	hgsc.bcm.edu	hg19	6	35260758	35260758	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF76	NM_003427	exon11	c.G1266T	p.A422A	GGTGGCGATGGTG	.	239.0	58.0	160.0	0.0	.	37	.	.	Atlas-SNP
BRPF3	27154	hgsc.bcm.edu	hg19	6	36169160	36169160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BRPF3	NM_015695	exon2	c.A1061C	p.Q354P	GTGCACAGCGGGC	.	131.0	21.0	89.0	0.0	.	93	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38994404	38994404	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH8	NM_001206927	exon92	c.T13797A	p.V4599V	TGAAGTTCTGAGA	.	81.0	20.0	61.0	0.0	.	1239	.	.	Atlas-SNP
GLP1R	2740	hgsc.bcm.edu	hg19	6	39040691	39040691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GLP1R	NM_002062	exon6	c.T563A	p.I188N	CCTTCATCCTGCG	.	146.0	42.0	92.0	0.0	.	64	.	.	Atlas-SNP
FRS3	10817	hgsc.bcm.edu	hg19	6	41739273	41739273	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FRS3	NM_006653	exon8	c.565-2A>T	.	TGGGACTGGGGAA	.	37.0	11.0	16.0	0.0	.	53	.	.	Atlas-SNP
PTK7	5754	hgsc.bcm.edu	hg19	6	43109672	43109672	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTK7	NM_001270398	exon12	c.T1796A	p.F599Y	CAGTTTTTATCAC	.	88.0	27.0	49.0	0.0	.	101	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43155101	43155101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CUL9	NM_015089	exon6	c.T1505C	p.L502P	GGGAGCTGCTTTT	.	187.0	25.0	110.0	0.0	.	248	.	.	Atlas-SNP
TMEM151B	441151	hgsc.bcm.edu	hg19	6	44243711	44243711	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM151B	NM_001137560	exon3	c.T1148A	p.L383Q	AGCAGCTGGTGCC	.	59.0	18.0	36.0	0.0	.	13	.	.	Atlas-SNP
ANKRD66	100287718	hgsc.bcm.edu	hg19	6	46721651	46721651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001162435	exon4	c.T521A	p.I174N	CACAGATCTATGG	.	190.0	101.0	95.0	0.0	.	.	.	.	Atlas-SNP
GPR116	221395	hgsc.bcm.edu	hg19	6	46826559	46826559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	GPR116,right_lower_lobe,carcinoma,0,1	GPR116	NM_015234	exon17	c.G3081T	p.L1027F	GGCTGCCAAGCTC	.	148.0	42.0	100.0	1.0	.	133	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46976727	46976727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR110	NM_153840	exon11	c.A2444T	p.Q815L	AGATTCTGGCTGT	.	457.0	122.0	275.0	0.0	.	102	.	.	Atlas-SNP
FAM83B	222584	hgsc.bcm.edu	hg19	6	54804890	54804890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM83B	NM_001010872	exon5	c.A1121T	p.Q374L	TACGTCAGTTTCA	.	409.0	95.0	239.0	0.0	.	186	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56328485	56328485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DST	NM_015548	exon81	c.C14896T	p.R4966X	GGGGTCGGAAAGC	.	168.0	30.0	83.0	0.0	.	1427	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56497806	56497806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DST	NM_001723	exon14	c.G2040T	p.Q680H	AACTTGCTGATGT	.	136.0	26.0	94.0	0.0	.	1427	.	.	Atlas-SNP
KIAA1586	57691	hgsc.bcm.edu	hg19	6	56917944	56917944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1586	NM_020931	exon4	c.A647G	p.H216R	AAGCCCATGGTAA	.	260.0	61.0	128.0	0.0	.	59	.	.	Atlas-SNP
PHF3	23469	hgsc.bcm.edu	hg19	6	64389990	64389990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHF3	NM_015153	exon2	c.A334T	p.R112W	CCTAACAGGAACT	.	124.0	60.0	149.0	0.0	.	191	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72892030	72892030	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RIMS1	NM_014989	exon6	c.C856G	p.L286V	GGAGCCCTGAAGA	.	279.0	128.0	295.0	0.0	.	278	.	.	Atlas-SNP
TTK	7272	hgsc.bcm.edu	hg19	6	80746315	80746315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TTK	NM_003318	exon17	c.A2048G	p.Q683R	ATTCTCAGGTAAG	.	104.0	39.0	87.0	0.0	.	199	.	.	Atlas-SNP
SPACA1	81833	hgsc.bcm.edu	hg19	6	88757710	88757710	+	Silent	SNP	G	G	A	rs376457887		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPACA1	NM_030960	exon1	c.G87A	p.G29G	GCGCGGGACCAAC	.	119.0	51.0	114.0	0.0	.	49	.	.	Atlas-SNP
RTN4IP1	84816	hgsc.bcm.edu	hg19	6	107076839	107076839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RTN4IP1	NM_032730	exon1	c.T58C	p.W20R	TTCTCCAGAAGCA	.	76.0	36.0	78.0	0.0	.	31	.	.	Atlas-SNP
DSE	29940	hgsc.bcm.edu	hg19	6	116757673	116757673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DSE	NM_001080976	exon6	c.A2042T	p.Q681L	ACTCTCAGCAACT	.	118.0	55.0	110.0	0.0	.	98	.	.	Atlas-SNP
MCM9	254394	hgsc.bcm.edu	hg19	6	119136767	119136767	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MCM9	NM_017696	exon12	c.A2652G	p.P884P	TCTGTCTGGGCTA	.	47.0	17.0	84.0	0.0	.	73	.	.	Atlas-SNP
CLVS2	134829	hgsc.bcm.edu	hg19	6	123319264	123319264	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLVS2	NM_001010852	exon2	c.T342C	p.Y114Y	CCACTATGGCAGG	.	76.0	28.0	95.0	0.0	.	79	.	.	Atlas-SNP
ENPP3	5169	hgsc.bcm.edu	hg19	6	132006562	132006562	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENPP3	NM_005021	exon13	c.A1179T	p.I393I	CAGAATAAACTTC	.	186.0	88.0	211.0	0.0	.	117	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152765648	152765648	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	SYNE1_ENST00000423061,NS,carcinoma,0,3	SYNE1	NM_033071	exon30	c.C3756A	p.L1252L	TTCTTCGAGAGAA	.	60.0	33.0	101.0	0.0	.	3227	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159654905	159654905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FNDC1	NM_032532	exon11	c.G3361T	p.A1121S	GCAGGGGCAGGTG	.	53.0	32.0	44.0	0.0	.	250	.	.	Atlas-SNP
DACT2	168002	hgsc.bcm.edu	hg19	6	168709146	168709146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DACT2	NM_214462	exon4	c.T1291A	p.C431S	GGACACAGCTGTT	.	123.0	55.0	112.0	0.0	.	46	.	.	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	hg19	7	1513873	1513873	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	INTS1	NM_001080453	exon41	c.G5760T	p.P1920P	CACGTGCGGCTGC	.	21.0	11.0	19.0	0.0	.	145	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2968233	2968233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CARD11	NM_032415	exon13	c.A1753T	p.S585C	CCCACCTGCGATG	.	28.0	9.0	30.0	0.0	.	339	.	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	hg19	7	6550307	6550307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRID2IP	NM_001145118	exon10	c.C1586A	p.P529H	ATCAGGGGAAGAG	.	60.0	29.0	64.0	0.0	.	82	.	.	Atlas-SNP
DBNL	28988	hgsc.bcm.edu	hg19	7	44096470	44096470	+	Missense_Mutation	SNP	C	C	A	rs145524590	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DBNL	NM_001122956	exon5	c.C442A	p.R148S	AGTGGCCGCTTCC	.	90.0	13.0	81.0	0.0	.	26	.	C|1.000;T|0.000	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47342734	47342734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNS3	NM_022748	exon22	c.A3271T	p.T1091S	GCAGGGTCACACC	.	100.0	11.0	112.0	0.0	.	140	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50467947	50467947	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IKZF1	NM_006060	exon8	c.C1182T	p.C394C	CAGCTGCCAAGAC	.	87.0	43.0	115.0	0.0	.	613	.	.	Atlas-SNP
ZNF479	90827	hgsc.bcm.edu	hg19	7	57188114	57188114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF479	NM_033273	exon5	c.G1008T	p.W336C	TGAGGACCAGCTA	.	188.0	67.0	202.0	0.0	.	193	.	.	Atlas-SNP
ZNF479	90827	hgsc.bcm.edu	hg19	7	57188115	57188115	+	Missense_Mutation	SNP	C	C	A	rs373275999		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF479	NM_033273	exon5	c.G1007T	p.W336L	GAGGACCAGCTAA	.	187.0	68.0	202.0	0.0	.	193	.	.	Atlas-SNP
DTX2	113878	hgsc.bcm.edu	hg19	7	76112438	76112438	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DTX2	NM_001102596	exon2	c.A882T	p.P294P	GCCCCCAGGATCC	.	143.0	55.0	154.0	0.0	.	64	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81714106	81714106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CACNA2D1	NM_000722	exon7	c.G637T	p.G213C	CTAGGCCAGTGGC	.	263.0	114.0	302.0	0.0	.	191	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82467649	82467649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon15	c.A14107G	p.N4703D	CATAGTTAATTTG	.	66.0	22.0	72.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82581285	82581285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon5	c.C8984A	p.S2995Y	GTGTCAGACATGG	.	168.0	85.0	161.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764725	82764725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCLO	NM_014510	exon3	c.G2141T	p.G714V	GGAGAGCCATGAA	.	151.0	71.0	167.0	0.0	.	1506	.	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	hg19	7	86416372	86416372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM3	NM_000840	exon3	c.A1264G	p.M422V	GATGCTATGAAGA	.	89.0	9.0	135.0	0.0	.	237	.	.	Atlas-SNP
FZD1	8321	hgsc.bcm.edu	hg19	7	90895564	90895564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD1	NM_003505	exon1	c.A1369G	p.I457V	CCGGCCATCAAGA	.	56.0	20.0	57.0	0.0	.	64	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94040245	94040245	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL1A2	NM_000089	exon22	c.T1242C	p.A414A	CAGAGCTGGCGTC	.	66.0	25.0	113.0	0.0	.	240	.	.	Atlas-SNP
GPR22	2845	hgsc.bcm.edu	hg19	7	107114661	107114661	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR22	NM_005295	exon3	c.T156A	p.I52I	AGAAATTGTGTTG	.	195.0	83.0	174.0	0.0	.	43	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107706917	107706917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LAMB4	NM_007356	exon20	c.A2575T	p.S859C	GGCAGCTGGGAAA	.	117.0	48.0	125.0	0.0	.	253	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107820770	107820770	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	NRCAM_ENST00000379028,NS,carcinoma,0,2	NRCAM	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	104.0	62.0	105.0	0.0	.	267	.	.	Atlas-SNP
ASZ1	136991	hgsc.bcm.edu	hg19	7	117003770	117003770	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASZ1	NM_130768	exon13	c.T1308C	p.H436H	TTGTATATGAGTT	.	85.0	26.0	73.0	0.0	.	56	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117407202	117407202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CTTNBP2	NM_033427	exon9	c.G2807T	p.G936V	AGCCCTCCGTGCC	.	76.0	32.0	72.0	0.0	.	200	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121653036	121653036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPRZ1	NM_002851	exon12	c.T3936A	p.F1312L	TGTATTTGCTACA	.	146.0	57.0	157.0	0.0	.	605	.	.	Atlas-SNP
FAM71F2	346653	hgsc.bcm.edu	hg19	7	128323061	128323061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM71F2	NM_001012454	exon5	c.A778G	p.K260E	AGCTACAAGATAC	.	77.0	39.0	111.0	0.0	.	19	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128434789	128434789	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC136	NM_001201372	exon4	c.G463T	p.E155X	CAGGCAGAGGTGT	.	222.0	83.0	314.0	1.0	.	170	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128450365	128450365	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC136	NM_022742	exon12	c.T1973G	p.L658W	AAGTGTTGGAGAA	.	158.0	69.0	149.0	0.0	.	170	.	.	Atlas-SNP
ATP6V1F	9296	hgsc.bcm.edu	hg19	7	128505618	128505618	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATP6V1F	NM_001198909	exon3	c.G430T	p.E144X	ACTGCCGAAGACC	.	64.0	27.0	79.0	0.0	.	12	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131908376	131908376	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLXNA4	NM_020911	exon9	c.A2007G	p.P669P	GCGGTATGGACTC	.	84.0	50.0	135.0	0.0	.	873	.	.	Atlas-SNP
SLC37A3	84255	hgsc.bcm.edu	hg19	7	140048534	140048534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC37A3	NM_207113	exon10	c.A916G	p.N306D	AGTAATTCACTAA	.	90.0	44.0	120.0	0.0	.	80	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140285439	140285439	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DENND2A	NM_015689	exon3	c.T1195C	p.L399L	AATTCAAGACACA	.	134.0	51.0	144.0	0.0	.	132	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141755835	141755835	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon29	c.C3519T	p.Y1173Y	CTACTACATGGGG	.	54.0	19.0	70.0	0.0	.	767	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141764190	141764190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAM	NM_004668	exon37	c.A4352G	p.E1451G	ATTTGGAGTCCAG	.	70.0	29.0	100.0	0.0	.	767	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142563375	142563375	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EPHB6	NM_004445	exon8	c.C1092T	p.A364A	AGAGGCCCCCTGC	.	44.0	13.0	97.0	0.0	.	168	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143044041	143044041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLCN1	NM_000083	exon20	c.A2402T	p.E801V	CTGAAGAGGTGAG	.	64.0	30.0	118.0	0.0	.	141	.	.	Atlas-SNP
OR2F1	26211	hgsc.bcm.edu	hg19	7	143657623	143657623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2F1	NM_012369	exon1	c.T560A	p.L187Q	TCAGGCTGGCTTG	.	161.0	56.0	172.0	0.0	.	71	.	.	Atlas-SNP
OR6B1	135946	hgsc.bcm.edu	hg19	7	143701238	143701238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR6B1	NM_001005281	exon1	c.T149A	p.L50Q	TGGTGCTGCAAAA	.	165.0	64.0	204.0	0.0	.	60	.	.	Atlas-SNP
OR2A12	346525	hgsc.bcm.edu	hg19	7	143792917	143792917	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2A12	NM_001004135	exon1	c.C717A	p.T239T	CTCTACCTGCTCC	.	136.0	44.0	173.0	0.0	.	56	.	.	Atlas-SNP
ZNF786	136051	hgsc.bcm.edu	hg19	7	148767562	148767562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF786	NM_152411	exon4	c.A2302G	p.K768E	GCCTTTTCTTAAT	.	138.0	58.0	111.0	0.0	.	69	.	.	Atlas-SNP
FASTK	10922	hgsc.bcm.edu	hg19	7	150774867	150774867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FASTK	NM_006712	exon6	c.G1040A	p.G347D	GGGGTGCCTGTGG	.	88.0	36.0	101.0	0.0	.	29	.	.	Atlas-SNP
AGAP3	116988	hgsc.bcm.edu	hg19	7	150839513	150839513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGAP3	NM_031946	exon16	c.A2065T	p.S689C	TGGGCCAGCCTGA	.	76.0	9.0	110.0	0.0	.	121	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3889582	3889582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD1	NM_033225	exon4	c.T455A	p.L152Q	CCTTTCAGGATTT	.	50.0	41.0	117.0	0.0	.	1469	.	.	Atlas-SNP
AGPAT5	55326	hgsc.bcm.edu	hg19	8	6612657	6612657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGPAT5	NM_018361	exon7	c.G831A	p.M277I	ACATATGAGAAGA	.	294.0	20.0	539.0	0.0	.	31	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10465648	10465648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RP1L1	NM_178857	exon4	c.A5960T	p.Q1987L	GCCTCCTGGGTCT	.	38.0	21.0	80.0	0.0	.	453	.	.	Atlas-SNP
ASAH1	427	hgsc.bcm.edu	hg19	8	17933073	17933073	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASAH1	NM_001127505	exon2	c.A150T	p.S50S	ATAGGTTGATTTT	.	65.0	55.0	141.0	0.0	.	71	.	.	Atlas-SNP
CDCA2	157313	hgsc.bcm.edu	hg19	8	25319603	25319603	+	Missense_Mutation	SNP	G	G	T	rs149260399	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CDCA2,NS,carcinoma,0,1	CDCA2	NM_152562	exon4	c.G266T	p.R89L	GTAGACGACGTTC	.	53.0	40.0	120.0	1.0	.	78	.	G|1.000;A|0.000	Atlas-SNP
FZD3	7976	hgsc.bcm.edu	hg19	8	28385435	28385435	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FZD3	NM_017412	exon5	c.G1158C	p.G386G	AGTTGGGGTTTCT	.	69.0	50.0	142.0	0.0	.	65	.	.	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	hg19	8	42171857	42171857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IKBKB	NM_001556	exon9	c.A710G	p.Q237R	TGCGGCAGAAGAG	.	95.0	61.0	165.0	0.0	.	88	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52320842	52320842	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	PXDNL_ENST00000356297,right_upper_lobe,carcinoma,-2,2	PXDNL	NM_144651	exon17	c.C3342G	p.P1114P	GTAGGAGGGTGCC	.	193.0	74.0	145.0	0.0	.	414	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321428	52321428	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PXDNL	NM_144651	exon17	c.T2756A	p.L919H	TTCAGGAGACCCC	.	201.0	67.0	178.0	0.0	.	414	.	.	Atlas-SNP
FAM150A	389658	hgsc.bcm.edu	hg19	8	53451056	53451056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM150A	NM_207413	exon4	c.T337C	p.C113R	TAGCACATCTTTT	.	701.0	160.0	521.0	0.0	.	6	.	.	Atlas-SNP
RGS20	8601	hgsc.bcm.edu	hg19	8	54764467	54764467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RGS20	NM_170587	exon1	c.A8T	p.Q3L	TGCCCCAGCTTTC	.	124.0	32.0	95.0	0.0	.	51	.	.	Atlas-SNP
PPP1R42	286187	hgsc.bcm.edu	hg19	8	67930067	67930067	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPP1R42	.	.	.	.	AACTTTCTGAAGA	.	48.0	29.0	36.0	0.0	.	2	.	.	Atlas-SNP
CSPP1	79848	hgsc.bcm.edu	hg19	8	67976717	67976717	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSPP1	NM_024790	exon1	c.A84T	p.R28R	GACGCGAGCCCGC	.	123.0	73.0	85.0	0.0	.	129	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68965436	68965436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PREX2	NM_025170	exon9	c.C1048A	p.H350N	GAGAAGCATGAAT	.	192.0	130.0	142.0	0.0	.	614	.	.	Atlas-SNP
STMN2	11075	hgsc.bcm.edu	hg19	8	80553736	80553736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STMN2	NM_007029	exon3	c.C239T	p.S80F	ACCTGTCCCTGGA	.	300.0	20.0	266.0	0.0	.	23	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	hg19	8	106813578	106813578	+	Missense_Mutation	SNP	G	G	A	rs377466426		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFPM2	NM_012082	exon8	c.G1268A	p.S423N	CCCAGAGCCAAAA	.	299.0	134.0	149.0	0.0	.	219	.	.	Atlas-SNP
TRHR	7201	hgsc.bcm.edu	hg19	8	110100121	110100121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRHR	NM_003301	exon1	c.T380G	p.I127S	TAGCAATCTGTCA	.	416.0	77.0	237.0	0.0	.	74	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110509272	110509272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PKHD1L1	NM_177531	exon64	c.C10452G	p.C3484W	GACATGCTGGGAT	.	318.0	68.0	140.0	0.0	.	522	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113326785	113326785	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD3	NM_198123	exon48	c.T7422A	p.Y2474X	GTCAGGATATCCA	.	354.0	83.0	184.0	0.0	.	2325	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113988150	113988150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSMD3	NM_198123	exon7	c.G1258T	p.A420S	TATCTGCTGGATG	.	316.0	145.0	150.0	0.0	.	2325	.	.	Atlas-SNP
ENPP2	5168	hgsc.bcm.edu	hg19	8	120628551	120628551	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENPP2	NM_001130863	exon8	c.T731A	p.L244Q	CCTCGCAGATGAA	.	195.0	93.0	71.0	0.0	.	254	.	.	Atlas-SNP
GSDMC	56169	hgsc.bcm.edu	hg19	8	130778031	130778031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GSDMC	NM_031415	exon4	c.T413C	p.L138S	GGATCCAACAGTT	.	117.0	29.0	73.0	0.0	.	71	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131955635	131955635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADCY8	NM_001115	exon4	c.C1315T	p.L439F	CGTTGAGCATCCT	.	175.0	77.0	116.0	0.0	.	291	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139705929	139705929	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL22A1	NM_152888	exon35	c.A2714C	p.Q905P	CCTTCCTGTCCCT	.	133.0	32.0	73.0	0.0	.	390	.	.	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143558633	143558633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BAI1	NM_001702	exon4	c.T1216G	p.C406G	GCCGTGTGCCCAG	.	54.0	10.0	42.0	0.0	.	146	.	.	Atlas-SNP
ARC	23237	hgsc.bcm.edu	hg19	8	143694546	143694546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARC	NM_015193	exon1	c.G1087T	p.A363S	GCTCGGCCGCCTG	.	86.0	36.0	53.0	0.0	.	34	.	.	Atlas-SNP
GLI4	2738	hgsc.bcm.edu	hg19	8	144351615	144351615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GLI4	NM_138465	exon2	c.G49T	p.V17F	TCCCCTGTCAGTC	.	151.0	68.0	98.0	0.0	.	28	.	.	Atlas-SNP
ZNF707	286075	hgsc.bcm.edu	hg19	8	144776308	144776308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF707	NM_001100598	exon6	c.A724G	p.S242G	GCGTTCAGCCTGA	.	89.0	10.0	49.0	0.0	.	21	.	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	hg19	9	14859459	14859459	+	Missense_Mutation	SNP	A	A	C	rs375644504		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FREM1	NM_144966	exon5	c.T353G	p.I118R	GTTTCTATGAAGG	.	119.0	49.0	178.0	0.0	.	261	.	.	Atlas-SNP
PTPLAD2	401494	hgsc.bcm.edu	hg19	9	21008034	21008034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTPLAD2	NM_001010915	exon6	c.T602C	p.M201T	AGCATCATGAGAT	.	98.0	43.0	98.0	0.0	.	26	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27203079	27203079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TEK	NM_000459	exon13	c.C2171A	p.A724D	ACCCAGCCTTTTC	.	134.0	56.0	185.0	0.0	.	250	.	.	Atlas-SNP
TAF1L	138474	hgsc.bcm.edu	hg19	9	32632432	32632432	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TAF1L	NM_153809	exon1	c.G3146C	p.R1049P	ATTGTGCGCACCA	.	217.0	81.0	215.0	0.0	.	382	.	.	Atlas-SNP
NOL6	65083	hgsc.bcm.edu	hg19	9	33469275	33469275	+	Silent	SNP	C	C	G	rs370042879	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOL6	NM_022917	exon6	c.G792C	p.P264P	GCGGCACGGGCGG	.	98.0	45.0	116.0	0.0	.	85	.	.	Atlas-SNP
KIF24	347240	hgsc.bcm.edu	hg19	9	34263160	34263160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF24	NM_194313	exon9	c.G1454T	p.C485F	CGGATACATTCCT	.	121.0	46.0	157.0	0.0	.	64	.	.	Atlas-SNP
DCAF10	79269	hgsc.bcm.edu	hg19	9	37861138	37861138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCAF10	NM_024345	exon7	c.G1313T	p.C438F	CCTAGTGTACTTG	.	34.0	8.0	48.0	0.0	.	31	.	.	Atlas-SNP
PIP5K1B	8395	hgsc.bcm.edu	hg19	9	71555562	71555562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PIP5K1B	NM_003558	exon14	c.C1358A	p.A453D	TCCTAGCCCTGGG	.	147.0	64.0	146.0	0.0	.	40	.	.	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	hg19	9	75404071	75404071	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMC1	NM_138691	exon15	c.A1062T	p.V354V	CCAAGTAGAAGAA	.	139.0	8.0	130.0	0.0	.	87	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79325463	79325463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	PRUNE2_ENST00000376718,NS,carcinoma,0,1	PRUNE2	NM_015225	exon8	c.G1727T	p.S576I	CTGGGACTGTCTT	.	74.0	27.0	83.0	0.0	.	331	.	.	Atlas-SNP
FOXB2	442425	hgsc.bcm.edu	hg19	9	79635447	79635447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXB2	NM_001013735	exon1	c.T877A	p.S293T	TTGGCGTCCGTCA	.	40.0	20.0	43.0	0.0	.	71	.	.	Atlas-SNP
AGTPBP1	23287	hgsc.bcm.edu	hg19	9	88292376	88292376	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AGTPBP1	NM_015239	exon6	c.T411G	p.S137S	AAGAATAGAATGA	.	122.0	6.0	110.0	0.0	.	128	.	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	hg19	9	88961390	88961390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZCCHC6	NM_024617	exon3	c.A526G	p.K176E	GCTTCTTGTTTTC	.	90.0	28.0	118.0	0.0	.	105	.	.	Atlas-SNP
SYK	6850	hgsc.bcm.edu	hg19	9	93650165	93650165	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYK	NM_003177	exon12	c.A1716G	p.P572P	GAAGCCATATCGA	.	97.0	40.0	111.0	0.0	.	132	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94486208	94486208	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ROR2	NM_004560	exon9	c.C2568A	p.V856V	CTTGGGGACCATC	.	39.0	16.0	73.0	0.0	.	167	.	.	Atlas-SNP
BICD2	23299	hgsc.bcm.edu	hg19	9	95477644	95477644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD2	NM_001003800	exon7	c.A2360T	p.Q787L	TTCTGCTGGATGG	.	81.0	35.0	85.0	0.0	.	68	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113168473	113168473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SVEP1	NM_153366	exon38	c.A9407T	p.E3136V	TGTGCCTCTCCAG	.	153.0	62.0	145.0	0.0	.	326	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113341549	113341549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SVEP1	NM_153366	exon1	c.C275T	p.S92F	ACGCTGGACGAAT	.	51.0	21.0	60.0	0.0	.	326	.	.	Atlas-SNP
ZNF483	158399	hgsc.bcm.edu	hg19	9	114289679	114289679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF483	NM_133464	exon2	c.C4A	p.Q2K	ACAATGCAAGCTG	.	117.0	9.0	104.0	0.0	.	78	.	.	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	hg19	9	127549471	127549471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OLFML2A	NM_182487	exon2	c.A308G	p.E103G	AGAACGAGTGGAA	.	70.0	35.0	76.0	0.0	.	61	.	.	Atlas-SNP
LMX1B	4010	hgsc.bcm.edu	hg19	9	129455877	129455877	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LMX1B	NM_001174146	exon5	c.A816T	p.A272A	AAGAGCAAAGGTA	.	88.0	37.0	145.0	0.0	.	86	.	.	Atlas-SNP
FAM129B	64855	hgsc.bcm.edu	hg19	9	130279260	130279260	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM129B	NM_022833	exon8	c.C849A	p.A283A	CGCCTTGGCCTGC	.	57.0	21.0	81.0	0.0	.	84	.	.	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134526250	134526250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAPGEF1	NM_198679	exon2	c.A151G	p.K51E	TTCCCTTCTTTGA	.	169.0	68.0	172.0	0.0	.	126	.	.	Atlas-SNP
GBGT1	26301	hgsc.bcm.edu	hg19	9	136029632	136029632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GBGT1	NM_021996	exon7	c.C376G	p.Q126E	AGGACTGGATGAA	.	33.0	11.0	37.0	0.0	.	25	.	.	Atlas-SNP
SOHLH1	402381	hgsc.bcm.edu	hg19	9	138589403	138589403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SOHLH1	NM_001012415	exon4	c.A416T	p.Q139L	TGAATCTGACTCG	.	67.0	30.0	98.0	0.0	.	70	.	.	Atlas-SNP
FAM208B	54906	hgsc.bcm.edu	hg19	10	5789185	5789185	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_017782	exon15	c.G3801T	p.V1267V	GTCTGTGAGTAGA	.	132.0	13.0	90.0	0.0	.	.	.	.	Atlas-SNP
CELF2	10659	hgsc.bcm.edu	hg19	10	11207586	11207586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CELF2	NM_006561	exon2	c.G212A	p.G71E	CTTACGGAGCCGT	.	115.0	69.0	91.0	0.0	.	78	.	.	Atlas-SNP
PTER	9317	hgsc.bcm.edu	hg19	10	16553155	16553155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTER	NM_030664	exon6	c.T950C	p.L317P	ATATACTCACCAA	.	156.0	31.0	123.0	0.0	.	40	.	.	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	hg19	10	21178773	21178773	+	Splice_Site	SNP	C	C	A	rs139581346	byfrequency;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEBL	NM_006393	exon4	c.258+1G>T	.	ACCTTACCTCAGA	.	299.0	170.0	208.0	0.0	.	199	.	C|0.999;T|0.001	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24833078	24833078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIAA1217	NM_019590	exon19	c.A4879T	p.R1627W	ATCGCTAGGTCTC	.	119.0	64.0	84.0	0.0	.	235	.	.	Atlas-SNP
PRTFDC1	56952	hgsc.bcm.edu	hg19	10	25145922	25145922	+	Missense_Mutation	SNP	A	A	T	rs148662493		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTFDC1	NM_020200	exon6	c.T426A	p.D142E	GACAACATCCTTT	.	164.0	12.0	136.0	0.0	.	29	.	A|1.000;T|0.000	Atlas-SNP
PRTFDC1	56952	hgsc.bcm.edu	hg19	10	25226147	25226147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTFDC1	NM_020200	exon3	c.T305C	p.M102T	ACCTTCATTGAGA	.	86.0	22.0	79.0	0.0	.	29	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26377316	26377316	+	Missense_Mutation	SNP	G	G	T	rs200209381	by1000genomes;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	MYO3A,bladder,carcinoma,0,1	MYO3A	NM_017433	exon15	c.G1544T	p.R515L	AATCCCGAGTTAT	.	166.0	42.0	106.0	0.0	.	371	.	G|1.000;A|0.000	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26465717	26465717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO3A	NM_017433	exon31	c.G4381T	p.G1461C	TATCTGGGTGTCT	.	98.0	5.0	87.0	0.0	.	371	.	.	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	hg19	10	34759158	34759158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PARD3	NM_001184788	exon4	c.C437T	p.P146L	AGAGCTGGGTCAC	.	130.0	34.0	117.0	0.0	.	131	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49982657	49982657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDFY4	NM_020945	exon14	c.C2708A	p.S903X	TCCACTCACGCCT	.	137.0	43.0	87.0	0.0	.	205	.	.	Atlas-SNP
MBL2	4153	hgsc.bcm.edu	hg19	10	54528161	54528161	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MBL2	NM_000242	exon4	c.T483G	p.S161S	GGCCACAGAGGCC	.	153.0	46.0	144.0	0.0	.	55	.	.	Atlas-SNP
SLC16A9	220963	hgsc.bcm.edu	hg19	10	61443920	61443920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC16A9	NM_194298	exon2	c.T130C	p.F44L	CACCAAAGGCATC	.	243.0	12.0	213.0	0.0	.	58	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61829030	61829030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANK3	NM_020987	exon37	c.C11609A	p.T3870N	GGTGAAGTGGCCT	.	354.0	202.0	252.0	0.0	.	703	.	.	Atlas-SNP
RUFY2	55680	hgsc.bcm.edu	hg19	10	70141014	70141014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RUFY2	NM_017987	exon11	c.A1187T	p.N396I	TCTATGTTAATTG	.	116.0	37.0	81.0	0.0	.	58	.	.	Atlas-SNP
SAR1A	56681	hgsc.bcm.edu	hg19	10	71917592	71917592	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAR1A	NM_020150	exon5	c.A276C	p.A92A	ATTAATTGCTGGG	.	127.0	43.0	92.0	0.0	.	19	.	.	Atlas-SNP
PSAP	5660	hgsc.bcm.edu	hg19	10	73591653	73591653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSAP	NM_001042466	exon3	c.A199G	p.K67E	CGTCTTTGCATAT	.	116.0	19.0	85.0	0.0	.	43	.	.	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	hg19	10	75525661	75525661	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEC24C	NM_198597	exon10	c.A1470T	p.V490V	CACTGTAGATTAC	.	108.0	34.0	123.0	0.0	.	86	.	.	Atlas-SNP
SFTPA1	653509	hgsc.bcm.edu	hg19	10	81371581	81371581	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SFTPA1	NM_001093770	exon3	c.C45A	p.A15A	CAGAGCCATGTGG	.	421.0	152.0	332.0	1.0	.	23	.	.	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	hg19	10	88441277	88441277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LDB3	NM_007078	exon4	c.C406A	p.P136T	GGCACCCCGGAGC	.	63.0	19.0	35.0	0.0	.	164	.	.	Atlas-SNP
SUFU	51684	hgsc.bcm.edu	hg19	10	104268957	104268957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SUFU	NM_001178133	exon2	c.A214T	p.S72C	TATGTTAGCATGT	.	130.0	89.0	150.0	0.0	.	44	.	.	Atlas-SNP
KCNK18	338567	hgsc.bcm.edu	hg19	10	118969679	118969679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNK18	NM_181840	exon3	c.A1024G	p.I342V	TTCTCCATTTATA	.	132.0	36.0	107.0	0.0	.	70	.	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	hg19	10	134910562	134910562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	GPR123,NS,carcinoma,0,1	GPR123	NM_001083909	exon3	c.C88A	p.L30I	ATGCTGCTCTGCC	.	54.0	32.0	44.0	0.0	.	118	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1031239	1031239	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC6	NM_005961	exon5	c.C504G	p.Y168X	ACCCATGTACTTC	.	124.0	51.0	121.0	0.0	.	408	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1087958	1087958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC2	NM_002457	exon25	c.T3433C	p.C1145R	GAGACCTGCAGGA	.	61.0	25.0	94.0	0.0	.	614	.	.	Atlas-SNP
KRTAP5-3	387266	hgsc.bcm.edu	hg19	11	1629498	1629498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-3	NM_001012708	exon1	c.T118A	p.C40S	AGCAGCAGACAGG	.	93.0	39.0	126.0	0.0	.	33	.	.	Atlas-SNP
OR56A5	390084	hgsc.bcm.edu	hg19	11	5988980	5988980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001146033	exon1	c.A745T	p.I249F	TGAGGATGAAGTG	.	157.0	63.0	195.0	0.0	.	.	.	.	Atlas-SNP
CCKBR	887	hgsc.bcm.edu	hg19	11	6292239	6292239	+	Splice_Site	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCKBR	NM_176875	exon5	c.812-2A>G	.	GTGCTCAGGGGCT	.	40.0	25.0	50.0	0.0	.	232	.	.	Atlas-SNP
OR2AG1	144125	hgsc.bcm.edu	hg19	11	6806883	6806883	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2AG1	NM_001004489	exon1	c.C615T	p.T205T	TGTGACCTTCCTG	.	104.0	43.0	83.0	0.0	.	57	.	.	Atlas-SNP
OR10A5	144124	hgsc.bcm.edu	hg19	11	6867208	6867208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR10A5	NM_178168	exon1	c.G295T	p.A99S	GGCTGTGCCACTC	.	222.0	92.0	237.0	0.0	.	48	.	.	Atlas-SNP
NLRP10	338322	hgsc.bcm.edu	hg19	11	7981937	7981937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NLRP10	NM_176821	exon2	c.A1222T	p.R408W	GGACCCTGTGCCG	.	57.0	23.0	57.0	0.0	.	146	.	.	Atlas-SNP
ZNF143	7702	hgsc.bcm.edu	hg19	11	9499989	9499989	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF143	NM_003442	exon6	c.A426T	p.T142T	TACCACAGCTTAT	.	75.0	22.0	98.0	0.0	.	38	.	.	Atlas-SNP
ZDHHC13	54503	hgsc.bcm.edu	hg19	11	19170802	19170802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZDHHC13	NM_019028	exon5	c.A443C	p.E148A	ATGGAGAGGGATT	.	134.0	51.0	135.0	0.0	.	40	.	.	Atlas-SNP
SLC6A5	9152	hgsc.bcm.edu	hg19	11	20652295	20652295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A5	NM_004211	exon10	c.A1558C	p.I520L	TTCGTCATCTTCT	.	134.0	52.0	151.0	0.0	.	151	.	.	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	hg19	11	33358716	33358716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HIPK3	NM_001048200	exon4	c.G1317T	p.M439I	AGATATGTCTCAT	.	60.0	27.0	91.0	0.0	.	92	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33628353	33628353	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_012194	exon13	c.A4155T	p.A1385A	ATCGGCAGTCCTC	.	118.0	47.0	119.0	0.0	.	.	.	.	Atlas-SNP
ELF5	2001	hgsc.bcm.edu	hg19	11	34515128	34515128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ELF5	NM_198381	exon3	c.A283T	p.S95C	GGCCACTGATGTT	.	95.0	45.0	117.0	0.0	.	21	.	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	hg19	11	55873220	55873220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	OR8H2,NS,carcinoma,0,1	OR8H2	NM_001005200	exon1	c.G702T	p.K234N	AGGAAAGCAGAAA	.	182.0	73.0	157.0	1.0	.	117	.	.	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55904587	55904587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8J3	NM_001004064	exon1	c.C608A	p.A203E	GTTGCTGCAGATA	.	76.0	33.0	53.0	0.0	.	112	.	.	Atlas-SNP
OR8K1	390157	hgsc.bcm.edu	hg19	11	56113774	56113774	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR8K1	NM_001002907	exon1	c.T260A	p.M87K	CGAAGATGTTAGT	.	149.0	53.0	145.0	0.0	.	93	.	.	Atlas-SNP
RAB3IL1	5866	hgsc.bcm.edu	hg19	11	61675695	61675695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAB3IL1	NM_001271686	exon2	c.A236G	p.H79R	TCCCTGTGGCCTT	.	19.0	14.0	47.0	0.0	.	39	.	.	Atlas-SNP
SLC22A24	283238	hgsc.bcm.edu	hg19	11	62886696	62886696	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC22A24	NM_001136506	exon3	c.A618T	p.A206A	GAACCCTGCCAAG	.	213.0	76.0	205.0	0.0	.	31	.	.	Atlas-SNP
PYGM	5837	hgsc.bcm.edu	hg19	11	64527129	64527129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PYGM	NM_001164716	exon1	c.A242G	p.K81R	AGCACCTTGGGGT	.	26.0	20.0	51.0	0.0	.	77	.	.	Atlas-SNP
MEN1	4221	hgsc.bcm.edu	hg19	11	64575092	64575092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEN1	NM_130800	exon4	c.A730G	p.M244V	ACACCATGAACGC	.	42.0	31.0	99.0	0.0	.	442	.	.	Atlas-SNP
KLC2	64837	hgsc.bcm.edu	hg19	11	66029592	66029592	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KLC2	NM_001134775	exon4	c.460-2A>T	.	CTTCCCAGGAGGA	.	109.0	45.0	115.0	0.0	.	50	.	.	Atlas-SNP
ADRBK1	156	hgsc.bcm.edu	hg19	11	67047308	67047308	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADRBK1	NM_001619	exon6	c.442-2A>T	.	TCCCTTAGCCATA	.	176.0	80.0	94.0	0.0	.	51	.	.	Atlas-SNP
P2RY6	5031	hgsc.bcm.edu	hg19	11	73007940	73007940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	P2RY6	NM_176796	exon4	c.T377A	p.L126Q	GCTACCTGGGCAT	.	38.0	8.0	25.0	0.0	.	45	.	.	Atlas-SNP
PRKRIR	5612	hgsc.bcm.edu	hg19	11	76063253	76063253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRKRIR	NM_004705	exon5	c.T941A	p.I314K	TCAGTTATCATAG	.	387.0	135.0	401.0	1.0	.	65	.	.	Atlas-SNP
THRSP	7069	hgsc.bcm.edu	hg19	11	77775013	77775013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	THRSP	NM_003251	exon1	c.A86G	p.Q29R	TGGAGCAGGTGGT	.	70.0	32.0	63.0	0.0	.	18	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88338049	88338049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRM5	NM_000842	exon5	c.C1231A	p.L411I	TGTGGAGCCCATA	.	117.0	52.0	140.0	0.0	.	414	.	.	Atlas-SNP
TYR	7299	hgsc.bcm.edu	hg19	11	88911129	88911129	+	Missense_Mutation	SNP	T	T	A	rs375229194	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TYR	NM_000372	exon1	c.T8A	p.L3Q	TGCTCCTGGCTGT	.	57.0	28.0	103.0	0.0	.	130	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92498202	92498202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAT3	NM_001008781	exon5	c.T4142C	p.V1381A	AAATTGTAGGGGT	.	115.0	46.0	143.0	0.0	.	1822	.	.	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	hg19	11	101375282	101375282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRPC6	NM_004621	exon2	c.G418T	p.A140S	CCACTGCCAACTG	.	97.0	40.0	120.0	0.0	.	132	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103026215	103026215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DYNC2H1	NM_001377	exon25	c.A3729T	p.K1243N	AGCCAAAGCTGCC	.	125.0	49.0	139.0	0.0	.	246	.	.	Atlas-SNP
ELMOD1	55531	hgsc.bcm.edu	hg19	11	107526788	107526788	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ELMOD1	NM_018712	exon11	c.A828G	p.T276T	GCAAACATTCTGT	.	59.0	30.0	84.0	0.0	.	40	.	.	Atlas-SNP
DDX10	1662	hgsc.bcm.edu	hg19	11	108709284	108709284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DDX10	NM_004398	exon14	c.G2077A	p.E693K	ACTGATGAAGGGG	.	186.0	62.0	236.0	0.0	.	70	.	.	Atlas-SNP
RNF214	257160	hgsc.bcm.edu	hg19	11	117109396	117109396	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RNF214	NM_207343	exon3	c.A187T	p.R63X	AATAACAGAAATG	.	137.0	58.0	150.0	0.0	.	54	.	.	Atlas-SNP
OR8G2	26492	hgsc.bcm.edu	hg19	11	124095466	124095466	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001007249	exon1	c.T69A	p.T23T	AGTGACTGAGTTC	.	127.0	54.0	168.0	0.0	.	.	.	.	Atlas-SNP
CDON	50937	hgsc.bcm.edu	hg19	11	125891234	125891234	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CDON	NM_016952	exon3	c.T258C	p.S86S	GTTGAGAGAAAGA	.	58.0	17.0	82.0	0.0	.	137	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133807314	133807314	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IGSF9B	NM_014987	exon5	c.C636T	p.S212S	CTGAATGCTGTAC	.	83.0	28.0	104.0	0.0	.	290	.	.	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	666812	666812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	B4GALNT3	NM_173593	exon16	c.G2419T	p.D807Y	ATCAAAGACATGG	.	147.0	54.0	165.0	0.0	.	64	.	.	Atlas-SNP
ENO2	2026	hgsc.bcm.edu	hg19	12	7026812	7026812	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENO2	NM_001975	exon6	c.G378C	p.R126R	TGAGCGGGAACTG	.	42.0	16.0	50.0	0.0	.	20	.	.	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	hg19	12	8990976	8990976	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	A2ML1,caecum,carcinoma,0,1	A2ML1	NM_144670	exon9	c.C900T	p.T300T	GGCCACCTTTGAC	.	111.0	50.0	197.0	1.0	.	199	.	.	Atlas-SNP
PHC1	1911	hgsc.bcm.edu	hg19	12	9083485	9083485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHC1	NM_004426	exon7	c.C1067A	p.T356K	CACGGACAGCCAC	.	121.0	36.0	79.0	0.0	.	67	.	.	Atlas-SNP
CD69	969	hgsc.bcm.edu	hg19	12	9907785	9907785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD69	NM_001781	exon3	c.A260G	p.E87G	CAGTCCTCAGAGC	.	103.0	42.0	131.0	0.0	.	23	.	.	Atlas-SNP
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10147839	10147839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLEC1B	NM_016509	exon5	c.A445T	p.I149F	CTTTGATGTACTC	.	40.0	13.0	55.0	0.0	.	39	.	.	Atlas-SNP
PRB2	653247	hgsc.bcm.edu	hg19	12	11546400	11546400	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRB2	NM_006248	exon3	c.A612T	p.P204P	TGGGGGTGGTCCT	.	322.0	46.0	369.0	0.0	.	168	.	.	Atlas-SNP
CASC1	55259	hgsc.bcm.edu	hg19	12	25267703	25267703	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CASC1	NM_001082972	exon13	c.C1672T	p.Q558X	CATCTTGAATCAA	.	113.0	45.0	165.0	0.0	.	146	.	.	Atlas-SNP
RASSF8	11228	hgsc.bcm.edu	hg19	12	26217535	26217535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RASSF8	NM_007211	exon4	c.G208T	p.A70S	CAGTATGCTAGTG	.	100.0	42.0	119.0	0.0	.	56	.	.	Atlas-SNP
PPFIBP1	8496	hgsc.bcm.edu	hg19	12	27832961	27832961	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPFIBP1	NM_177444	exon20	c.T1880A	p.L627X	CCCGATTAGGTTG	.	74.0	39.0	90.0	0.0	.	153	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32137297	32137297	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018169	exon4	c.A3408G	p.K1136K	TCAGAAAGAAGAG	.	90.0	35.0	101.0	0.0	.	.	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32369200	32369200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD1	NM_001714	exon2	c.C233G	p.S78C	CCTTCTCCATCCA	.	150.0	58.0	163.0	0.0	.	89	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32490444	32490444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BICD1	NM_001714	exon7	c.A2264G	p.Y755C	ATGAATATGTCAC	.	114.0	50.0	130.0	0.0	.	89	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49432023	49432023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MLL2	NM_003482	exon34	c.A9116G	p.D3039G	AGGTCATCCAAGT	.	138.0	59.0	143.0	0.0	.	1173	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50749396	50749396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM186A	NM_001145475	exon4	c.T1219C	p.Y407H	CTGTATATGAAAT	.	69.0	33.0	75.0	0.0	.	181	.	.	Atlas-SNP
KRT5	3852	hgsc.bcm.edu	hg19	12	52913903	52913903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT5	NM_000424	exon1	c.T178A	p.Y60N	TGCCATAGCCACC	.	68.0	26.0	81.0	0.0	.	88	.	.	Atlas-SNP
MAP3K12	7786	hgsc.bcm.edu	hg19	12	53878895	53878895	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAP3K12	NM_001193511	exon6	c.C1084T	p.L362L	CGGGCAGATGGAG	.	123.0	52.0	126.0	0.0	.	160	.	.	Atlas-SNP
NABP2	79035	hgsc.bcm.edu	hg19	12	56619991	56619991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_024068	exon5	c.A319G	p.N107D	GTTCCTAACTTCA	.	165.0	65.0	188.0	0.0	.	.	.	.	Atlas-SNP
ZBTB39	9880	hgsc.bcm.edu	hg19	12	57397645	57397645	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZBTB39	NM_014830	exon2	c.G1057C	p.E353Q	TGGGCTCTAGAAC	.	117.0	48.0	128.0	0.0	.	58	.	.	Atlas-SNP
IRAK3	11213	hgsc.bcm.edu	hg19	12	66638446	66638446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRAK3	NM_007199	exon9	c.T1068A	p.D356E	AACAGATGTCTAC	.	101.0	35.0	117.0	0.0	.	75	.	.	Atlas-SNP
TPH2	121278	hgsc.bcm.edu	hg19	12	72425319	72425319	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TPH2	NM_173353	exon11	c.T1317C	p.I439I	GTCAATTACCCGT	.	141.0	60.0	156.0	0.0	.	81	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78513452	78513452	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NAV3	NM_014903	exon15	c.C3476G	p.T1159S	CCAGTACCAGCAG	.	132.0	56.0	169.0	0.0	.	506	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80750668	80750668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OTOGL	NM_173591	exon48	c.A5966T	p.E1989V	AGGAAGAACCTTG	.	269.0	120.0	247.0	1.0	.	235	.	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	82147865	82147865	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPFIA2	NM_001220476	exon2	c.C136G	p.L46V	TGTCTAGAAGACG	.	120.0	49.0	138.0	0.0	.	207	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85518207	85518207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRIQ1	NM_001079910	exon17	c.G3917T	p.S1306I	CAAGCAGTATTCC	.	76.0	32.0	70.0	0.0	.	512	.	.	Atlas-SNP
KITLG	4254	hgsc.bcm.edu	hg19	12	88910260	88910260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KITLG	NM_003994	exon5	c.A371G	p.K124R	GATTTTTTTAGAT	.	44.0	22.0	69.0	0.0	.	26	.	.	Atlas-SNP
DCN	1634	hgsc.bcm.edu	hg19	12	91546950	91546950	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCN	NM_001920	exon6	c.T669A	p.L223L	TTCCGTAAGGGAA	.	82.0	37.0	100.0	0.0	.	61	.	.	Atlas-SNP
IFT81	28981	hgsc.bcm.edu	hg19	12	110565247	110565247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFT81	NM_014055	exon2	c.A62G	p.Y21C	AGAACTATAATTT	.	249.0	83.0	249.0	0.0	.	86	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112688787	112688787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001109662	exon24	c.A3302T	p.K1101I	AAAAGTTTGGACC	.	127.0	58.0	158.0	0.0	.	.	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116446847	116446847	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MED13L	NM_015335	exon10	c.A1371G	p.S457S	TAAAGATGAAGAT	.	123.0	41.0	123.0	0.0	.	193	.	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	hg19	12	119554788	119554788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SRRM4	NM_194286	exon4	c.A412T	p.S138C	AAGAAAAGTTCCA	.	60.0	25.0	70.0	0.0	.	131	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120271925	120271925	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CIT	NM_001206999	exon6	c.T624A	p.A208A	GTGAACAGCCAAA	.	122.0	45.0	147.0	0.0	.	535	.	.	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	hg19	12	122413230	122413230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR66	NM_144668	exon18	c.A2852G	p.K951R	AAGGAAAATTCTA	.	156.0	55.0	200.0	0.0	.	143	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126138603	126138603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM132B	NM_052907	exon9	c.A2584G	p.K862E	TTACTCAAAAGTG	.	91.0	44.0	132.0	0.0	.	207	.	.	Atlas-SNP
GPR133	283383	hgsc.bcm.edu	hg19	12	131456098	131456098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR133	NM_198827	exon4	c.A283G	p.S95G	TGCATCAGCAAGC	.	77.0	34.0	85.0	0.0	.	136	.	.	Atlas-SNP
ULK1	8408	hgsc.bcm.edu	hg19	12	132393332	132393332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ULK1	NM_003565	exon6	c.G460T	p.A154S	CGCCGCGCCAACC	.	37.0	19.0	44.0	0.0	.	92	.	.	Atlas-SNP
PUS1	80324	hgsc.bcm.edu	hg19	12	132423731	132423731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PUS1	NM_025215	exon4	c.C455A	p.A152D	CCGCAGCCGGCCA	.	88.0	42.0	100.0	0.0	.	47	.	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	30066785	30066785	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MTUS2	NM_001033602	exon10	c.T3538C	p.L1180L	CCAGAATTGATGT	.	98.0	35.0	99.0	0.0	.	279	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35729982	35729982	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBEA	NM_015678	exon19	c.T2517A	p.I839I	GAAAATTCAGAAT	.	90.0	18.0	62.0	0.0	.	340	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	hg19	13	36049699	36049699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAB21L1	NM_005584	exon1	c.C577A	p.P193T	GCCAGGGGATGTG	.	34.0	12.0	55.0	0.0	.	52	.	.	Atlas-SNP
SLITRK6	84189	hgsc.bcm.edu	hg19	13	86368800	86368800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLITRK6	NM_032229	exon2	c.T1844G	p.L615R	ATAATCAGAAGTC	.	173.0	69.0	194.0	0.0	.	150	.	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	hg19	13	95858957	95858957	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ABCC4	NM_005845	exon8	c.C990A	p.I330I	CACGATGATTTTG	.	120.0	58.0	168.0	0.0	.	248	.	.	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	hg19	13	96237036	96237036	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DZIP1	NM_198968	exon22	c.G2478T	p.V826V	ATTTAGCACATGA	.	123.0	50.0	181.0	0.0	.	195	.	.	Atlas-SNP
EFNB2	1948	hgsc.bcm.edu	hg19	13	107145427	107145427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	EFNB2,NS,carcinoma,0,1	EFNB2	NM_004093	exon5	c.G963A	p.M321I	CGGGGGCATCTCC	.	32.0	9.0	32.0	0.0	.	39	.	.	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111938504	111938504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF7	NM_001113511	exon18	c.A2024G	p.K675R	TTAGTAAGAGCCC	.	78.0	8.0	80.0	0.0	.	157	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23865974	23865974	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH6	NM_002471	exon19	c.A2221C	p.R741R	CCTTCCTGCTATC	.	110.0	40.0	124.0	0.0	.	274	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23901694	23901694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon6	c.T524G	p.L175R	GTGATCAGGATGG	.	121.0	52.0	148.0	2.0	.	349	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24806550	24806550	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RIPK3	NM_006871	exon8	c.T1017A	p.S339S	ATTACGAGAGTGC	.	28.0	13.0	52.0	0.0	.	43	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31641123	31641123	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECTD1	NM_015382	exon8	c.C1276T	p.Q426X	ACCTTTGACCTCT	.	312.0	121.0	352.0	1.0	.	159	.	.	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34269082	34269082	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NPAS3	NM_001164749	exon12	c.G1569C	p.P523P	TAACCCGGACAGC	.	121.0	54.0	152.0	0.0	.	266	.	.	Atlas-SNP
CLEC14A	161198	hgsc.bcm.edu	hg19	14	38724410	38724410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLEC14A	NM_175060	exon1	c.G818A	p.C273Y	GTAGCACATTCGC	.	59.0	30.0	77.0	0.0	.	83	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42356398	42356398	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRFN5	NM_152447	exon3	c.C570A	p.T190T	GGGGACCTTCTCC	.	91.0	38.0	86.0	0.0	.	269	.	.	Atlas-SNP
DLGAP5	9787	hgsc.bcm.edu	hg19	14	55629758	55629758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DLGAP5	NM_014750	exon13	c.C1584G	p.I528M	AAGTTTGATCAGA	.	47.0	14.0	72.0	0.0	.	84	.	.	Atlas-SNP
ZFP36L1	677	hgsc.bcm.edu	hg19	14	69256435	69256435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZFP36L1	NM_001244701	exon3	c.C1039A	p.L347I	GGAAGAGGAAGGT	.	63.0	34.0	96.0	0.0	.	47	.	.	Atlas-SNP
VRTN	55237	hgsc.bcm.edu	hg19	14	74825421	74825421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VRTN	NM_018228	exon2	c.G1935T	p.M645I	GGACATGATCGCT	.	126.0	49.0	125.0	0.0	.	79	.	.	Atlas-SNP
SAMD15	161394	hgsc.bcm.edu	hg19	14	77843998	77843998	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAMD15	NM_001010860	exon1	c.T237A	p.P79P	GAAACCTGGCGGG	.	127.0	53.0	129.0	0.0	.	60	.	.	Atlas-SNP
CATSPERB	79820	hgsc.bcm.edu	hg19	14	92126218	92126218	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CATSPERB	NM_024764	exon15	c.T1395C	p.F465F	AGAAACAAAAGTA	.	34.0	13.0	52.0	0.0	.	114	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94046694	94046694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UNC79	NM_020818	exon19	c.T2102A	p.L701Q	AGAGACTAGCTCC	.	104.0	53.0	102.0	0.0	.	366	.	.	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	hg19	14	95560494	95560494	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DICER1	NM_177438	exon25	c.5096-1G>T	.	AACAATCTGAGGG	.	47.0	17.0	60.0	0.0	.	181	.	.	Atlas-SNP
BDKRB2	624	hgsc.bcm.edu	hg19	14	96707662	96707662	+	Missense_Mutation	SNP	G	G	T	rs201791629	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BDKRB2	NM_000623	exon3	c.G997T	p.V333L	GTGTACGTGATCG	.	99.0	44.0	117.0	0.0	.	56	.	.	Atlas-SNP
SETD3	84193	hgsc.bcm.edu	hg19	14	99865385	99865385	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SETD3	NM_032233	exon13	c.A1416G	p.K472K	AATCTCTTTCTCA	.	142.0	57.0	148.0	0.0	.	56	.	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	hg19	14	104460669	104460669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TDRD9	NM_153046	exon10	c.G1181T	p.G394V	CCCTAGGTCTGGG	.	77.0	29.0	63.0	0.0	.	175	.	.	Atlas-SNP
TMEM179	388021	hgsc.bcm.edu	hg19	14	105070865	105070865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TMEM179	NM_207379	exon1	c.C214T	p.R72C	TGAAGCGGCAGGC	.	43.0	19.0	63.0	0.0	.	9	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921224	24921224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018958	exon1	c.G210T	p.R70S	TAAGAGGCCGTGT	.	46.0	21.0	39.0	0.0	.	.	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921716	24921716	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_018958	exon1	c.G702A	p.L234L	CTGCTTGGAAGGC	.	61.0	32.0	57.0	0.0	.	.	.	.	Atlas-SNP
GABRA5	2558	hgsc.bcm.edu	hg19	15	27114454	27114454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABRA5	NM_001165037	exon3	c.T59A	p.I20N	TTTGTATTTCCAT	.	132.0	45.0	139.0	0.0	.	127	.	.	Atlas-SNP
CHRM5	1133	hgsc.bcm.edu	hg19	15	34355220	34355220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CHRM5	NM_012125	exon3	c.T302G	p.L101R	GGAGTCTGGCTTG	.	138.0	54.0	172.0	0.0	.	59	.	.	Atlas-SNP
ATPBD4	89978	hgsc.bcm.edu	hg19	15	35830633	35830633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATPBD4	NM_001141972	exon3	c.A154T	p.T52S	CCACTGTCTGATA	.	157.0	70.0	151.0	0.0	.	30	.	.	Atlas-SNP
FAM98B	283742	hgsc.bcm.edu	hg19	15	38773693	38773693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FAM98B	NM_001042429	exon7	c.A930C	p.E310D	AAATGAATTGATG	.	150.0	60.0	149.0	0.0	.	53	.	.	Atlas-SNP
GATM	2628	hgsc.bcm.edu	hg19	15	45668899	45668899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GATM	NM_001482	exon2	c.A188C	p.D63A	GGGCAGTCCTTGG	.	100.0	37.0	99.0	0.0	.	34	.	.	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45694903	45694903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPATA5L1	NM_024063	exon1	c.G276C	p.R92S	CCGGAGGAGTCTC	.	14.0	8.0	10.0	0.0	.	40	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48741033	48741033	+	Missense_Mutation	SNP	G	G	T	rs145082616	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FBN1	NM_000138	exon46	c.C5603A	p.T1868K	CCAACTGTGTCAA	.	69.0	7.0	60.0	0.0	.	310	.	G|1.000;A|0.000	Atlas-SNP
GABPB1	2553	hgsc.bcm.edu	hg19	15	50578223	50578223	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GABPB1	NM_002041	exon8	c.A1077T	p.P359P	TTATTTTGGATGA	.	104.0	45.0	130.0	0.0	.	33	.	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	hg19	15	55971629	55971629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PRTG	NM_173814	exon7	c.G988T	p.V330F	ATTCAACAAATGA	.	104.0	44.0	88.0	0.0	.	110	.	.	Atlas-SNP
CLN6	54982	hgsc.bcm.edu	hg19	15	68504126	68504126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CLN6	NM_017882	exon4	c.A373T	p.S125C	GGATGCTGGCACC	.	57.0	30.0	105.0	0.0	.	16	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68609680	68609680	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ITGA11	NM_001004439	exon21	c.G2638T	p.E880X	CACACTCAATGCT	.	101.0	39.0	130.0	0.0	.	110	.	.	Atlas-SNP
NEO1	4756	hgsc.bcm.edu	hg19	15	73564819	73564819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NEO1	NM_001172623	exon19	c.G2881C	p.V961L	AAGGATGTGACTG	.	91.0	35.0	123.0	0.0	.	102	.	.	Atlas-SNP
ISLR2	57611	hgsc.bcm.edu	hg19	15	74426996	74426996	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ISLR2	NM_001130138	exon4	c.C1901G	p.P634R	AGGCCCCTGACCC	.	89.0	40.0	112.0	0.0	.	78	.	.	Atlas-SNP
PSMA4	5685	hgsc.bcm.edu	hg19	15	78837269	78837269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA4	NM_001102667	exon6	c.G346A	p.D116N	CTGTGTGATATCA	.	99.0	39.0	129.0	0.0	.	17	.	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	hg19	15	79080627	79080627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	ADAMTS7,neck,malignant_melanoma,0,1	ADAMTS7	NM_014272	exon8	c.C1268T	p.A423V	GGAGCGGCGTCGT	.	84.0	41.0	121.0	1.0	.	142	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88472454	88472454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NTRK3	NM_001012338	exon17	c.T2101A	p.S701T	CTCTGGACATGCC	.	162.0	70.0	197.0	0.0	.	587	.	.	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	hg19	15	90272996	90272996	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WDR93	NM_020212	exon11	c.A1206G	p.K402K	GGATAAAGCTGGT	.	93.0	5.0	135.0	0.0	.	63	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91423153	91423153	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FURIN	NM_002569	exon12	c.C1315T	p.Q439X	CTGGCCCAGAATT	.	122.0	56.0	174.0	0.0	.	85	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101523888	101523888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK1	NM_024652	exon4	c.G417T	p.L139F	GGAATTGCTTGAG	.	65.0	24.0	89.0	0.0	.	310	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101595197	101595197	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRK1	NM_024652	exon27	c.C4101A	p.A1367A	AATAGCCTACCAG	.	125.0	57.0	156.0	0.0	.	310	.	.	Atlas-SNP
CCNF	899	hgsc.bcm.edu	hg19	16	2499281	2499281	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCNF	NM_001761	exon12	c.1219-2A>T	.	CTGTCTAGGTCCC	.	60.0	25.0	82.0	0.0	.	110	.	.	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4625242	4625242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf96	NM_001145011	exon5	c.A761T	p.Q254L	TGGCCCAGACCAC	.	26.0	6.0	31.0	0.0	.	28	.	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	hg19	16	8988707	8988707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	USP7	NM_003470	exon29	c.G3045T	p.E1015D	AAAATGCTCGCCC	.	88.0	33.0	104.0	0.0	.	116	.	.	Atlas-SNP
ERCC4	2072	hgsc.bcm.edu	hg19	16	14020498	14020498	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ERCC4	NM_005236	exon3	c.A469T	p.K157X	AAAAACAAACGTG	.	80.0	31.0	87.0	0.0	.	100	.	.	Atlas-SNP
MKL2	57496	hgsc.bcm.edu	hg19	16	14341108	14341108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MKL2	NM_014048	exon12	c.C1991T	p.P664L	GCCAGCCCGTCTC	.	72.0	26.0	99.0	0.0	.	103	.	.	Atlas-SNP
ARL6IP1	23204	hgsc.bcm.edu	hg19	16	18810100	18810100	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARL6IP1	NM_015161	exon2	c.G93A	p.L31L	AGCCATCAGCATC	.	120.0	48.0	132.0	0.0	.	23	.	.	Atlas-SNP
C16orf62	57020	hgsc.bcm.edu	hg19	16	19640035	19640035	+	Missense_Mutation	SNP	A	A	C	rs370460906	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf62	NM_020314	exon17	c.A1727C	p.N576T	TTCTCAACGAAGC	.	82.0	26.0	107.0	0.0	.	164	.	.	Atlas-SNP
NSMCE1	197370	hgsc.bcm.edu	hg19	16	27268833	27268833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NSMCE1	NM_145080	exon2	c.A59G	p.Q20R	AGCAACTGGAGGA	.	106.0	49.0	146.0	0.0	.	28	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27472839	27472839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GTF3C1	NM_001520	exon37	c.G6162T	p.K2054N	CCTTGGCTTTCTC	.	45.0	18.0	68.0	0.0	.	210	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30749727	30749727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SRCAP	NM_006662	exon34	c.G8366A	p.G2789E	GCCCGGGAAGCCC	.	66.0	9.0	79.0	0.0	.	298	.	.	Atlas-SNP
C16orf93	90835	hgsc.bcm.edu	hg19	16	30771751	30771751	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C16orf93	NM_001195620	exon4	c.T323A	p.L108Q	CACCCTAGCTCCA	.	98.0	35.0	115.0	0.0	.	33	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47622887	47622887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PHKB	NM_000293	exon10	c.C942G	p.S314R	TTTTAGCCAGACA	.	73.0	26.0	68.0	0.0	.	298	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53515713	53515713	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBL2	NM_005611	exon21	c.A3215C	p.K1072T	GAGAAAAGATTTT	.	111.0	57.0	121.0	0.0	.	115	.	.	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	hg19	16	57760018	57760018	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC135	NM_032269	exon13	c.C1797A	p.P599P	GAAGCCCGCGGAG	.	239.0	116.0	294.0	0.0	.	97	.	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76509861	76509861	+	Missense_Mutation	SNP	G	G	A	rs150806968		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CNTNAP4_ENST00000478060,neck,malignant_melanoma,0,6	CNTNAP4	NM_138994	exon10	c.G1462A	p.G488S	GAACACGGTGGGG	.	75.0	29.0	112.0	0.0	.	600	.	G|1.000;A|0.000	Atlas-SNP
OSGIN1	29948	hgsc.bcm.edu	hg19	16	83998905	83998905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OSGIN1	NM_182981	exon6	c.G727A	p.V243I	AACGTGGTCCTCG	.	35.0	15.0	42.0	0.0	.	33	.	.	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	hg19	16	84459339	84459339	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ATP2C2	NM_014861	exon11	c.920-2A>T	.	TTCCCCAGGTCTC	.	168.0	64.0	152.0	0.0	.	75	.	.	Atlas-SNP
FOXF1	2294	hgsc.bcm.edu	hg19	16	86544400	86544400	+	Nonsense_Mutation	SNP	C	C	A	rs121909336		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FOXF1	NM_001451	exon1	c.C225A	p.Y75X	GATCTACCAGTTC	.	121.0	43.0	136.0	0.0	.	59	.	.	Atlas-SNP
IL17C	27189	hgsc.bcm.edu	hg19	16	88705453	88705453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IL17C	NM_013278	exon2	c.T71A	p.L24H	CCTCCCTCAGGGG	.	71.0	8.0	79.0	0.0	.	6	.	.	Atlas-SNP
OR1A1	8383	hgsc.bcm.edu	hg19	17	3119514	3119514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	OR1A1,NS,neuroblastoma,0,1	OR1A1	NM_014565	exon1	c.C600A	p.Y200X	GATGTACCTAGGG	.	85.0	36.0	99.0	0.0	.	54	.	.	Atlas-SNP
SPATA22	84690	hgsc.bcm.edu	hg19	17	3349813	3349813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPATA22	NM_032598	exon7	c.A755G	p.Y252C	CGCCAATACTTCA	.	409.0	155.0	423.0	0.0	.	49	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3937451	3937451	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZZEF1	NM_015113	exon40	c.T6442C	p.L2148L	CTGGCAAAAGACG	.	202.0	78.0	199.0	0.0	.	195	.	.	Atlas-SNP
ZMYND15	84225	hgsc.bcm.edu	hg19	17	4649179	4649179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZMYND15	NM_001267822	exon14	c.C2147A	p.A716E	GCCCGGCGCCCGG	.	245.0	129.0	315.0	0.0	.	87	.	.	Atlas-SNP
SAT2	112483	hgsc.bcm.edu	hg19	17	7530941	7530941	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SAT2	NM_133491	exon1	c.C13A	p.R5R	GGATCCGCACGGA	.	89.0	31.0	101.0	0.0	.	8	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7644139	7644139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH2	NM_020877	exon10	c.G1518A	p.R506R	CAAGCGGACTTAT	.	52.0	18.0	51.0	0.0	.	498	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7660453	7660453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH2	NM_020877	exon12	c.T1949A	p.L650Q	AGCGGCTGCTGTT	.	73.0	29.0	146.0	0.0	.	498	.	.	Atlas-SNP
ALOX12B	242	hgsc.bcm.edu	hg19	17	7989531	7989531	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ALOX12B	NM_001139	exon2	c.A155T	p.Q52L	GTGTACTGGCCCA	.	74.0	33.0	102.0	0.0	.	61	.	.	Atlas-SNP
ARHGEF15	22899	hgsc.bcm.edu	hg19	17	8215862	8215862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGEF15	NM_025014	exon2	c.G505C	p.D169H	GATGCAGATGCCC	.	38.0	14.0	39.0	0.0	.	97	.	.	Atlas-SNP
RCVRN	5957	hgsc.bcm.edu	hg19	17	9804355	9804355	+	Silent	SNP	C	C	T	rs144667256		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RCVRN	NM_002903	exon2	c.G444A	p.P148P	CTTTTCCGGCGTG	.	99.0	49.0	101.0	0.0	.	34	.	C|1.000;T|0.000	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	hg19	17	10212854	10212854	+	Silent	SNP	G	G	C	rs371037408	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYH13	NM_003802	exon34	c.C4950G	p.V1650V	GCCCTGGACCGTG	.	47.0	21.0	49.0	0.0	.	533	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11696953	11696953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DNAH9	NM_001372	exon42	c.A8195G	p.Q2732R	AAATCCAGACAGA	.	102.0	40.0	111.0	0.0	.	695	.	.	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17698925	17698925	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RAI1	NM_030665	exon3	c.A2663T	p.Q888L	GCATGCAGGACCC	.	66.0	33.0	80.0	0.0	.	121	.	.	Atlas-SNP
MFAP4	4239	hgsc.bcm.edu	hg19	17	19289686	19289686	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MFAP4	NM_001198695	exon3	c.C249G	p.P83P	GCCCGAGGGGTAG	.	137.0	59.0	137.0	0.0	.	33	.	.	Atlas-SNP
SLC6A4	6532	hgsc.bcm.edu	hg19	17	28534791	28534791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC6A4	NM_001045	exon13	c.T1609A	p.W537R	TCCTCCAGAACCA	.	117.0	43.0	205.0	0.0	.	60	.	.	Atlas-SNP
MYO1D	4642	hgsc.bcm.edu	hg19	17	31048069	31048069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MYO1D	NM_015194	exon15	c.C1885T	p.R629C	TCTGGCGGAAGGC	.	125.0	10.0	155.0	0.0	.	93	.	.	Atlas-SNP
SLFN13	146857	hgsc.bcm.edu	hg19	17	33767910	33767910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLFN13	NM_144682	exon6	c.T2398A	p.F800I	TTTCAAAGAAGCA	.	114.0	52.0	92.0	0.0	.	79	.	.	Atlas-SNP
CCL14	6358	hgsc.bcm.edu	hg19	17	34311402	34311402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCL14	NM_032962	exon3	c.A214G	p.N72D	GGCTGTTGGTCTC	.	98.0	38.0	111.0	0.0	.	22	.	.	Atlas-SNP
ARHGAP23	57636	hgsc.bcm.edu	hg19	17	36619393	36619393	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARHGAP23	NM_001199417	exon5	c.C384A	p.V128V	AAGCGTCATTGGG	.	107.0	39.0	136.0	0.0	.	48	.	.	Atlas-SNP
KRT23	25984	hgsc.bcm.edu	hg19	17	39084545	39084545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	KRT23,NS,malignant_melanoma,-1,1	KRT23	NM_015515	exon6	c.A866G	p.E289G	TTCAGTTCGTGGA	.	57.0	28.0	89.0	0.0	.	59	.	.	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	hg19	17	39296524	39296524	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP4-6	NM_030976	exon1	c.C216G	p.T72T	GCAGGTGGTCTGA	.	45.0	19.0	47.0	0.0	.	46	.	.	Atlas-SNP
KRTAP29-1	100533177	hgsc.bcm.edu	hg19	17	39459055	39459055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP29-1	NM_001257309	exon1	c.C49T	p.P17S	TGGTGGGCACAGC	.	102.0	36.0	94.0	0.0	.	2	.	.	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	hg19	17	39464117	39464117	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP16-1	NM_001146182	exon1	c.C1389T	p.C463C	TTTTTTGCAATCC	.	103.0	32.0	124.0	0.0	.	12	.	.	Atlas-SNP
KRT34	3885	hgsc.bcm.edu	hg19	17	39538297	39538297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRT34	NM_021013	exon1	c.G328A	p.A110T	AGCTGGCCAGGCG	.	179.0	69.0	175.0	0.0	.	71	.	.	Atlas-SNP
MLX	6945	hgsc.bcm.edu	hg19	17	40721541	40721541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MLX	NM_170607	exon6	c.G555T	p.Q185H	CATTCAGTTTTTG	.	79.0	32.0	83.0	0.0	.	17	.	.	Atlas-SNP
RPL27	6155	hgsc.bcm.edu	hg19	17	41150829	41150829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RPL27	NM_000988	exon2	c.G62A	p.R21H	CCGGACGCAAAGC	.	42.0	19.0	50.0	0.0	.	6	.	.	Atlas-SNP
IFI35	3430	hgsc.bcm.edu	hg19	17	41166312	41166312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFI35	NM_005533	exon7	c.G863T	p.G288V	AGTCAGGCTAGGG	.	52.0	29.0	80.0	0.0	.	23	.	.	Atlas-SNP
NBR1	4077	hgsc.bcm.edu	hg19	17	41349033	41349033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NBR1	NM_031862	exon16	c.A1936G	p.T646A	AGTGGGACCCAGT	.	187.0	11.0	201.0	0.0	.	55	.	.	Atlas-SNP
SLC4A1	6521	hgsc.bcm.edu	hg19	17	42328926	42328926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC4A1	NM_000342	exon18	c.C2342T	p.S781F	ATGCGGGACAGGA	.	135.0	47.0	153.0	0.0	.	104	.	.	Atlas-SNP
FMNL1	752	hgsc.bcm.edu	hg19	17	43311537	43311537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FMNL1	NM_005892	exon6	c.C584A	p.S195Y	CCTCCTCCGTGCC	.	63.0	11.0	89.0	0.0	.	78	.	.	Atlas-SNP
NME1	4830	hgsc.bcm.edu	hg19	17	49239133	49239133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NME1	NM_198175	exon6	c.A461T	p.E154V	AGAAGGAGATCGG	.	104.0	53.0	131.0	0.0	.	12	.	.	Atlas-SNP
OR4D2	124538	hgsc.bcm.edu	hg19	17	56247411	56247411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR4D2	NM_001004707	exon1	c.A395G	p.Y132C	TCCGCTATGTCAC	.	73.0	28.0	74.0	0.0	.	48	.	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56384317	56384317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BZRAP1	NM_004758	exon25	c.A4996G	p.K1666E	CATCCTTGTCCCC	.	43.0	17.0	48.0	0.0	.	287	.	.	Atlas-SNP
GDPD1	284161	hgsc.bcm.edu	hg19	17	57351120	57351120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GDPD1	NM_182569	exon10	c.A931T	p.N311Y	TTACATAACTTTT	.	65.0	25.0	44.0	0.0	.	39	.	.	Atlas-SNP
NACA2	342538	hgsc.bcm.edu	hg19	17	59667968	59667968	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NACA2	NM_199290	exon1	c.A574T	p.R192X	TTGCTCTCGACAC	.	110.0	43.0	109.0	0.0	.	33	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61566056	61566056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACE	NM_000789	exon16	c.T2353G	p.W785G	CTGTTATGGGCAT	.	70.0	29.0	68.0	0.0	.	187	.	.	Atlas-SNP
GH2	2689	hgsc.bcm.edu	hg19	17	61957713	61957713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GH2	NM_002059	exon5	c.T622C	p.C208R	AGCGGCACTGCAC	.	91.0	11.0	114.0	0.0	.	73	.	.	Atlas-SNP
CSHL1	1444	hgsc.bcm.edu	hg19	17	61987231	61987231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CSHL1	NM_022579	exon5	c.T509A	p.L170H	TGCTTGAGGGTCT	.	150.0	71.0	137.0	0.0	.	42	.	.	Atlas-SNP
MGAT5B	146664	hgsc.bcm.edu	hg19	17	74921070	74921070	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MGAT5B	NM_198955	exon8	c.C1081A	p.R361R	CCAGGCCGGGGAA	.	54.0	20.0	78.0	0.0	.	98	.	.	Atlas-SNP
AZI1	22994	hgsc.bcm.edu	hg19	17	79170793	79170793	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AZI1	NM_014984	exon14	c.G1710C	p.V570V	CCGCATCACAGAC	.	240.0	109.0	240.0	0.0	.	145	.	.	Atlas-SNP
FN3KRP	79672	hgsc.bcm.edu	hg19	17	80674715	80674715	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FN3KRP	NM_024619	exon1	c.C84T	p.G28G	CCAGGGCCGGAGC	.	449.0	206.0	586.0	2.0	.	31	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5397253	5397253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	EPB41L3,NS,carcinoma,0,1	EPB41L3	NM_012307	exon18	c.C2645A	p.A882E	GGCTGTGCTGCAG	.	81.0	24.0	90.0	0.0	.	222	.	.	Atlas-SNP
IMPA2	3613	hgsc.bcm.edu	hg19	18	12009936	12009936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IMPA2	NM_014214	exon3	c.C285A	p.S95R	CCACAGCCCGACG	.	92.0	42.0	101.0	0.0	.	27	.	.	Atlas-SNP
CEP192	55125	hgsc.bcm.edu	hg19	18	13113583	13113583	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CEP192	NM_032142	exon41	c.7048-2A>T	.	TTTCGTAGGTCTC	.	70.0	32.0	62.0	0.0	.	340	.	.	Atlas-SNP
MC5R	4161	hgsc.bcm.edu	hg19	18	13826194	13826194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MC5R	NM_005913	exon1	c.A430C	p.I144L	GTCACCATCTTCT	.	84.0	32.0	105.0	0.0	.	83	.	.	Atlas-SNP
HRH4	59340	hgsc.bcm.edu	hg19	18	22057255	22057255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HRH4	NM_021624	exon3	c.T902C	p.L301S	GGAGATTAGCCAA	.	142.0	55.0	172.0	0.0	.	46	.	.	Atlas-SNP
KCTD1	284252	hgsc.bcm.edu	hg19	18	24126984	24126984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCTD1	NM_001142730	exon1	c.A1517T	p.Q506L	GGCGGCTGGGGGC	.	26.0	15.0	26.0	0.0	.	76	.	.	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	hg19	18	29793483	29793483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEP1B	NM_005925	exon11	c.A1540C	p.N514H	ATGTCCAATCAGC	.	89.0	35.0	89.0	0.0	.	54	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	hg19	18	30554635	30554635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001105528	exon21	c.T2399A	p.L800Q	CTCTGCAGCTGAC	.	43.0	15.0	48.0	0.0	.	.	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50923756	50923756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DCC	NM_005215	exon18	c.A2767T	p.T923S	ATGGTAACAAAAA	.	145.0	60.0	184.0	0.0	.	360	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	53303052	53303052	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TCF4	NM_001243226	exon1	c.A77T	p.Y26F	TTTGAGTAATTTG	.	116.0	40.0	120.0	0.0	.	178	.	.	Atlas-SNP
ADNP2	22850	hgsc.bcm.edu	hg19	18	77896097	77896097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ADNP2	NM_014913	exon4	c.A2801G	p.H934R	CCGTCCATTTGGT	.	78.0	31.0	57.0	0.0	.	102	.	.	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1434882	1434882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DAZAP1	NM_018959	exon12	c.G1195C	p.V399L	CACAACGTGCAAG	.	80.0	29.0	96.0	0.0	.	52	.	.	Atlas-SNP
THOP1	7064	hgsc.bcm.edu	hg19	19	2810300	2810300	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	THOP1	NM_003249	exon10	c.1456-2A>T	.	CCCTGCAGGCGGA	.	45.0	19.0	61.0	0.0	.	49	.	.	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	hg19	19	4510630	4510630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLIN4	NM_001080400	exon3	c.G3300T	p.K1100N	AAGGCCCTTGGTA	.	63.0	30.0	65.0	0.0	.	191	.	.	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	hg19	19	5455751	5455751	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNRF4	NM_181710	exon1	c.C249T	p.V83V	GGCAGTCAAAGCC	.	25.0	11.0	31.0	0.0	.	59	.	.	Atlas-SNP
CCL25	6370	hgsc.bcm.edu	hg19	19	8117950	8117950	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCL25	NM_001201359	exon2	c.T17A	p.L6Q	GGCTCCTGGCCTG	.	46.0	22.0	71.0	0.0	.	12	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9048117	9048117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MUC16	NM_024690	exon5	c.A33514G	p.I11172V	AAGAAATAGTCAG	.	71.0	28.0	112.0	0.0	.	4315	.	.	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	hg19	19	10129508	10129508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RDH8	NM_015725	exon3	c.G424T	p.V142F	CGTCTCGTCAAAG	.	77.0	25.0	81.0	0.0	.	51	.	.	Atlas-SNP
ICAM5	7087	hgsc.bcm.edu	hg19	19	10404581	10404581	+	Missense_Mutation	SNP	G	G	T	rs147604357	bycluster;by1000genomes;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	ICAM5,NS,carcinoma,0,1	ICAM5	NM_003259	exon7	c.G1673T	p.R558L	ACCCTCGGGGCTC	.	41.0	19.0	52.0	0.0	.	53	.	G|1.000;A|0.000	Atlas-SNP
NANOS3	342977	hgsc.bcm.edu	hg19	19	13988465	13988465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NANOS3	NM_001098622	exon1	c.T403A	p.Y135N	CAGGGCTACACCT	.	52.0	29.0	77.0	0.0	.	19	.	.	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14029727	14029727	+	Missense_Mutation	SNP	G	G	T	rs369829647	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CC2D1A	NM_017721	exon10	c.G1021T	p.V341L	CCAGAGGTGCCCC	.	167.0	64.0	211.0	0.0	.	67	.	.	Atlas-SNP
EMR3	84658	hgsc.bcm.edu	hg19	19	14772862	14772862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMR3	NM_032571	exon4	c.G268A	p.G90R	AACTTCCTTCGAC	.	109.0	47.0	122.0	0.0	.	99	.	.	Atlas-SNP
CCDC105	126402	hgsc.bcm.edu	hg19	19	15122107	15122107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC105	NM_173482	exon1	c.A470G	p.Q157R	TGCGCCAGCGCGA	.	73.0	26.0	58.0	0.0	.	53	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15281192	15281192	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NOTCH3	NM_000435	exon27	c.T5064C	p.S1688S	GTGACCAGAGGCC	.	51.0	24.0	86.0	0.0	.	340	.	.	Atlas-SNP
ANO8	57719	hgsc.bcm.edu	hg19	19	17441186	17441186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ANO8	NM_020959	exon9	c.T1121C	p.L374P	AGCATGAGCAAGA	.	74.0	31.0	92.0	0.0	.	67	.	.	Atlas-SNP
PIK3R2	5296	hgsc.bcm.edu	hg19	19	18273890	18273890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PIK3R2	NM_005027	exon10	c.A1223G	p.E408G	GCCACGAGTCTCT	.	147.0	50.0	178.0	0.0	.	48	.	.	Atlas-SNP
ZNF708	7562	hgsc.bcm.edu	hg19	19	21477081	21477081	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF708	NM_021269	exon4	c.T687A	p.C229X	TTTTCCACATTCT	.	32.0	15.0	27.0	0.0	.	66	.	.	Atlas-SNP
CD22	933	hgsc.bcm.edu	hg19	19	35823773	35823773	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CD22	NM_001185100	exon3	c.A358T	p.R120W	GGGCTGAGGATGG	.	76.0	26.0	89.0	0.0	.	129	.	.	Atlas-SNP
APLP1	333	hgsc.bcm.edu	hg19	19	36370026	36370026	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APLP1	NM_001024807	exon16	c.C1764A	p.I588I	GCTGATCATGGGA	.	21.0	9.0	44.0	0.0	.	77	.	.	Atlas-SNP
HKR1	284459	hgsc.bcm.edu	hg19	19	37854185	37854185	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HKR1	NM_181786	exon6	c.A1488T	p.P496P	GAAGCCATTTGTA	.	128.0	50.0	103.0	0.0	.	74	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41071395	41071395	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SPTBN4	NM_020971	exon28	c.G5982A	p.R1994R	GGCGCGGGTGCCT	.	116.0	48.0	110.0	0.0	.	213	.	.	Atlas-SNP
GRIK5	2901	hgsc.bcm.edu	hg19	19	42510881	42510881	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GRIK5	NM_002088	exon15	c.T1953C	p.P651P	CTCCACAGGCACC	.	49.0	17.0	59.0	0.0	.	220	.	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	hg19	19	42795109	42795109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CIC	NM_015125	exon10	c.C2189G	p.S730W	TGTATTCGGACAA	.	104.0	46.0	109.0	0.0	.	249	.	.	Atlas-SNP
CEACAM1	634	hgsc.bcm.edu	hg19	19	43013273	43013273	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CEACAM1	NM_001712	exon9	c.A1569G	p.V523V	CTTTTTTACTTCT	.	126.0	61.0	154.0	0.0	.	43	.	.	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	hg19	19	44223324	44223324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IRGC	NM_019612	exon2	c.C614A	p.A205D	GGGAGGCCGGCGT	.	34.0	14.0	33.0	0.0	.	67	.	.	Atlas-SNP
SMG9	56006	hgsc.bcm.edu	hg19	19	44241827	44241827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SMG9	NM_019108	exon9	c.A917T	p.Q306L	GCAATCTGGAGTG	.	70.0	26.0	94.0	0.0	.	39	.	.	Atlas-SNP
LYPD5	284348	hgsc.bcm.edu	hg19	19	44306498	44306498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LYPD5	NM_001031749	exon1	c.G35T	p.C12F	AAGAGGCAGAGCA	.	38.0	15.0	68.0	0.0	.	22	.	.	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44892183	44892183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF285	NM_152354	exon4	c.A224C	p.Q75P	CAAATCTGCCAGC	.	175.0	67.0	197.0	0.0	.	86	.	.	Atlas-SNP
CYTH2	9266	hgsc.bcm.edu	hg19	19	48978146	48978146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CYTH2	NM_017457	exon8	c.G748T	p.G250W	GATGACGGGAATG	.	97.0	4.0	127.0	0.0	.	33	.	.	Atlas-SNP
BCAT2	587	hgsc.bcm.edu	hg19	19	49309901	49309901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	BCAT2	NM_001190	exon3	c.G173C	p.G58A	GTCTTCCCAAACA	.	60.0	22.0	60.0	0.0	.	35	.	.	Atlas-SNP
LRRC4B	94030	hgsc.bcm.edu	hg19	19	51022208	51022208	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRC4B	NM_001080457	exon3	c.C762T	p.S254S	GCGCAGGCTGGTG	.	66.0	21.0	77.0	0.0	.	89	.	.	Atlas-SNP
SYT3	84258	hgsc.bcm.edu	hg19	19	51128790	51128790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SYT3	NM_032298	exon6	c.G1434T	p.E478D	CCGCCCCTCGCTG	.	84.0	27.0	114.0	0.0	.	85	.	.	Atlas-SNP
SIGLEC7	27036	hgsc.bcm.edu	hg19	19	51645871	51645871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SIGLEC7	NM_016543	exon1	c.A245T	p.N82I	CAAACAACCCAGC	.	95.0	9.0	139.0	0.0	.	74	.	.	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	hg19	19	52219555	52219555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HAS1	NM_001523	exon4	c.G1015T	p.D339Y	GCCGGTCATCCCC	.	103.0	38.0	163.0	0.0	.	61	.	.	Atlas-SNP
ZNF28	7576	hgsc.bcm.edu	hg19	19	53303548	53303548	+	Missense_Mutation	SNP	T	T	C	rs369691107		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF28	NM_006969	exon4	c.A1550G	p.H517R	CCAGTATGAACTC	.	65.0	21.0	104.0	0.0	.	191	.	.	Atlas-SNP
LILRB3	11025	hgsc.bcm.edu	hg19	19	54721082	54721082	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRB3	NM_001081450	exon13	c.T1779C	p.D593D	GGTCACATCCTGG	.	166.0	80.0	176.0	0.0	.	67	.	.	Atlas-SNP
LILRA3	11026	hgsc.bcm.edu	hg19	19	54803147	54803147	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LILRA3	NM_006865	exon4	c.C530G	p.S177X	CGGGATGACCCAC	.	129.0	46.0	167.0	0.0	.	65	.	.	Atlas-SNP
U2AF2	11338	hgsc.bcm.edu	hg19	19	56173908	56173908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	U2AF2,NS,carcinoma,0,2	U2AF2	NM_001012478	exon6	c.G527T	p.G176V	GCCTGGGGGGGCT	.	131.0	52.0	156.0	1.0	.	62	.	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	hg19	19	57327366	57327366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PEG3	NM_001146184	exon9	c.A2444G	p.H815R	CTCTGATGGTTGA	.	148.0	6.0	177.0	0.0	.	414	.	.	Atlas-SNP
ZIM3	114026	hgsc.bcm.edu	hg19	19	57646378	57646378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZIM3	NM_052882	exon5	c.G1327T	p.G443X	TTTGTCCAGTATG	.	127.0	50.0	143.0	0.0	.	107	.	.	Atlas-SNP
ZNF256	10172	hgsc.bcm.edu	hg19	19	58452722	58452722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF256	NM_005773	exon3	c.A1454G	p.H485R	CCAGTATGAACTT	.	56.0	21.0	60.0	0.0	.	117	.	.	Atlas-SNP
SLC27A5	10998	hgsc.bcm.edu	hg19	19	59022230	59022230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	SLC27A5,bladder,carcinoma,0,1	SLC27A5	NM_012254	exon2	c.C756T	p.L252L	ATGGCTGAGGTAG	.	52.0	25.0	55.0	0.0	.	58	.	.	Atlas-SNP
SOX12	6666	hgsc.bcm.edu	hg19	20	306791	306791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SOX12	NM_006943	exon1	c.G223A	p.G75S	CGCCTGGGCCGCC	.	123.0	51.0	155.0	0.0	.	8	.	.	Atlas-SNP
STK35	140901	hgsc.bcm.edu	hg19	20	2097911	2097911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	STK35	NM_080836	exon3	c.A1492G	p.M498V	ACTTCCATGTCTG	.	80.0	40.0	127.0	0.0	.	31	.	.	Atlas-SNP
SMOX	54498	hgsc.bcm.edu	hg19	20	4155893	4155893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SMOX	NM_175839	exon2	c.T191C	p.V64A	GCCGTGTGCAGAG	.	95.0	36.0	106.0	0.0	.	119	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9288511	9288511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCB4	NM_182797	exon2	c.T50G	p.L17W	CCTTTTTGCAAGA	.	80.0	51.0	80.0	0.0	.	204	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9352961	9352961	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLCB4	NM_182797	exon9	c.T597A	p.I199I	TGAAATTGAGCCC	.	165.0	80.0	186.0	0.0	.	204	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9525119	9525119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PAK7	NM_177990	exon8	c.T1766C	p.F589S	GCACAGAAACCAA	.	139.0	48.0	169.0	0.0	.	194	.	.	Atlas-SNP
SEC23B	10483	hgsc.bcm.edu	hg19	20	18491619	18491619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SEC23B	NM_032985	exon2	c.A140G	p.E47G	TGAAAGAACGTCC	.	239.0	106.0	216.0	0.0	.	70	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20144825	20144825	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf26	NM_015585	exon11	c.T1158A	p.A386A	CTCAGCTGCTTTT	.	60.0	19.0	77.0	0.0	.	188	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20269371	20269371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C20orf26	NM_015585	exon23	c.T2915C	p.I972T	ACGACATAGCCAT	.	166.0	66.0	218.0	0.0	.	188	.	.	Atlas-SNP
NANP	140838	hgsc.bcm.edu	hg19	20	25596957	25596957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NANP	NM_152667	exon2	c.G351T	p.M117I	AGTAAGCATGGCT	.	89.0	37.0	121.0	0.0	.	10	.	.	Atlas-SNP
TM9SF4	9777	hgsc.bcm.edu	hg19	20	30738606	30738606	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TM9SF4	NM_014742	exon12	c.G1173T	p.V391V	CAGGGTGTTTGGC	.	110.0	50.0	133.0	0.0	.	65	.	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33324500	33324500	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NCOA6	NM_014071	exon12	c.A5956T	p.R1986X	CTGGTCTGGCAAC	.	123.0	54.0	146.0	0.0	.	219	.	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	hg19	20	34242510	34242510	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	RBM12,NS,carcinoma,0,1	RBM12	NM_001198840	exon2	c.G735A	p.P245P	CAAGGGCGGCATG	.	72.0	26.0	81.0	2.0	.	93	.	.	Atlas-SNP
RBL1	5933	hgsc.bcm.edu	hg19	20	35632146	35632146	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RBL1	NM_183404	exon21	c.A2995T	p.R999X	CGCTTCTTGGTGT	.	228.0	97.0	213.0	0.0	.	114	.	.	Atlas-SNP
WFDC3	140686	hgsc.bcm.edu	hg19	20	44405762	44405762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WFDC3	NM_080614	exon5	c.T445A	p.C149S	TGCAGCATTTATG	.	151.0	62.0	190.0	0.0	.	18	.	.	Atlas-SNP
WFDC3	140686	hgsc.bcm.edu	hg19	20	44418554	44418554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	WFDC3	NM_080614	exon2	c.T61A	p.W21R	TTATCCAGGATTC	.	66.0	20.0	115.0	0.0	.	18	.	.	Atlas-SNP
ZNF334	55713	hgsc.bcm.edu	hg19	20	45130946	45130946	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF334	NM_018102	exon5	c.A1032T	p.T344T	CTCCCCTGTGTGT	.	97.0	40.0	107.0	0.0	.	101	.	.	Atlas-SNP
PSMA7	5688	hgsc.bcm.edu	hg19	20	60718284	60718284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA7	NM_002792	exon1	c.G76C	p.V26L	TCTTGACGGCCTC	.	18.0	14.0	9.0	0.0	.	13	.	.	Atlas-SNP
PSMA7	5688	hgsc.bcm.edu	hg19	20	60718296	60718296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PSMA7	NM_002792	exon1	c.G64T	p.A22S	CCTGCGCGTACTC	.	16.0	12.0	11.0	0.0	.	13	.	.	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61947981	61947981	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL20A1	NM_020882	exon21	c.T2601C	p.S867S	GCCCTCTGCCTTC	.	38.0	16.0	77.0	0.0	.	137	.	.	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62203527	62203527	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001037335	exon2	c.A212T	p.D71V	GCCTGGTCGAAGG	.	83.0	23.0	79.0	0.0	.	.	.	.	Atlas-SNP
ZGPAT	84619	hgsc.bcm.edu	hg19	20	62366141	62366141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZGPAT	NM_032527	exon5	c.G1016T	p.R339I	GCTCCAGACTCCT	.	94.0	35.0	88.0	0.0	.	57	.	.	Atlas-SNP
HSPA13	6782	hgsc.bcm.edu	hg19	21	15746215	15746215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HSPA13	NM_006948	exon5	c.A1139C	p.K380T	AGTATTTTCTGAA	.	149.0	71.0	153.0	0.0	.	44	.	.	Atlas-SNP
CCT8	10694	hgsc.bcm.edu	hg19	21	30437364	30437364	+	Silent	SNP	A	A	C	rs143385323	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCT8	NM_006585	exon7	c.T687G	p.G229G	TACATCACCTTCG	.	75.0	38.0	90.0	0.0	.	38	.	A|0.999;G|0.001	Atlas-SNP
IFNAR1	3454	hgsc.bcm.edu	hg19	21	34715660	34715660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFNAR1	NM_000629	exon4	c.A463T	p.M155L	AGTGTTATGTGGG	.	113.0	48.0	98.0	0.0	.	44	.	.	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	hg19	21	43496123	43496123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	UMODL1	NM_173568	exon2	c.T86A	p.L29H	AAGGCCTCTCCCT	.	92.0	34.0	131.0	0.0	.	186	.	.	Atlas-SNP
ARVCF	421	hgsc.bcm.edu	hg19	22	19969151	19969151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ARVCF	NM_001670	exon5	c.A479G	p.D160G	GCACCATCTGCAA	.	38.0	19.0	44.0	0.0	.	54	.	.	Atlas-SNP
HPS4	89781	hgsc.bcm.edu	hg19	22	26860234	26860234	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HPS4	NM_022081	exon11	c.C1362G	p.P454P	GGGAATGGGGGCT	.	52.0	20.0	82.0	0.0	.	123	.	.	Atlas-SNP
PLA2G3	50487	hgsc.bcm.edu	hg19	22	31533830	31533830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PLA2G3	NM_015715	exon4	c.G932T	p.G311V	GGTGGCCCCTTCC	.	90.0	37.0	144.0	0.0	.	85	.	.	Atlas-SNP
RFPL2	10739	hgsc.bcm.edu	hg19	22	32586882	32586882	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	RFPL2	NM_001098527	exon5	c.G1014A	p.E338E	CAATGGCTCCTCA	.	264.0	116.0	250.0	1.0	.	81	.	.	Atlas-SNP
ENTHD1	150350	hgsc.bcm.edu	hg19	22	40257983	40257983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ENTHD1	NM_152512	exon3	c.G379T	p.V127F	TGATGACTTGCTT	.	194.0	81.0	209.0	0.0	.	83	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40708962	40708962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TNRC6B	NM_001162501	exon19	c.G4639T	p.A1547S	TACAGTGCCTCTG	.	106.0	39.0	110.0	0.0	.	195	.	.	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45970507	45970507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	FBLN1	NM_006486	exon15	c.C1814T	p.T605I	TGCCTACCTTCCG	.	57.0	22.0	82.0	0.0	.	143	.	.	Atlas-SNP
GTSE1	51512	hgsc.bcm.edu	hg19	22	46719148	46719148	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GTSE1	NM_016426	exon8	c.G1494T	p.T498T	GTGCACGTCAGTT	.	57.0	23.0	82.0	0.0	.	100	.	.	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	hg19	22	50580530	50580530	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MOV10L1	NM_018995	exon16	c.C2091T	p.D697D	GACGGACCAAGCT	.	79.0	37.0	85.0	0.0	.	238	.	.	Atlas-SNP
ACR	49	hgsc.bcm.edu	hg19	22	51178223	51178223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACR	NM_001097	exon3	c.T383C	p.I128T	AGAAAATCATCAT	.	126.0	58.0	156.0	0.0	.	28	.	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	hg19	X	6069058	6069058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NLGN4X	NM_181332	exon2	c.C450A	p.N150K	GTAGATGTTTAAG	.	51.0	41.0	74.0	0.0	.	191	.	.	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23397834	23397834	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PTCHD1	NM_173495	exon2	c.C478T	p.L160L	GAAGAGCTAAAGA	.	242.0	204.0	358.0	0.0	.	213	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24383280	24383280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	.	NM_001136234	exon1	c.G2403T	p.Q801H	ACCGCAGTGGCAG	.	77.0	66.0	121.0	1.0	.	.	.	.	Atlas-SNP
MAGEB5	347541	hgsc.bcm.edu	hg19	X	26235588	26235588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEB5	NM_001271752	exon2	c.T170C	p.M57T	TCAAAATGAAACA	.	132.0	111.0	124.0	0.0	.	5	.	.	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	hg19	X	49143177	49143177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PPP1R3F	NM_033215	exon4	c.A2025G	p.I675M	CCAGATAGAGGTC	.	115.0	99.0	134.0	0.0	.	56	.	.	Atlas-SNP
APEX2	27301	hgsc.bcm.edu	hg19	X	55033578	55033578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	APEX2	NM_014481	exon6	c.A1267T	p.T423S	CTCATGACCCCGA	.	86.0	62.0	124.0	0.0	.	50	.	.	Atlas-SNP
KIF4A	24137	hgsc.bcm.edu	hg19	X	69572476	69572476	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KIF4A	NM_012310	exon14	c.A1458G	p.A486A	GGCTGCAGCCATT	.	152.0	77.0	104.0	0.0	.	118	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	69772028	69772028	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TEX11	NM_001003811	exon29	c.T2513A	p.L838Q	TCTTCCAGGGGAC	.	467.0	215.0	326.0	1.0	.	132	.	.	Atlas-SNP
P2RY10	27334	hgsc.bcm.edu	hg19	X	78216943	78216943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	P2RY10	NM_198333	exon2	c.C926A	p.A309D	TTATGGCTTCAGA	.	188.0	84.0	125.0	0.0	.	99	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91131828	91131828	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDH11X	NM_001168363	exon2	c.A589T	p.K197X	GGAGACAAGATGC	.	554.0	238.0	333.0	1.0	.	714	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91873264	91873264	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	PCDH11X	NM_032968	exon7	c.T3369A	p.A1123A	AACAGCTGCAGAA	.	245.0	116.0	112.0	0.0	.	714	.	.	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	hg19	X	107464587	107464587	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	COL4A6	NM_001847	exon4	c.T165C	p.I55I	AATTCCAATTGGT	.	153.0	73.0	89.0	0.0	.	270	.	.	Atlas-SNP
GPC4	2239	hgsc.bcm.edu	hg19	X	132458433	132458433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPC4	NM_001448	exon3	c.G451T	p.V151L	CCACCACGTAGTA	.	200.0	91.0	118.0	0.0	.	58	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135488040	135488040	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	GPR112	NM_153834	exon23	c.A8844T	p.L2948F	ATTCTTACTTGGC	.	157.0	26.0	76.0	0.0	.	459	.	.	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140969387	140969387	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MAGEC3	NM_138702	exon4	c.C714T	p.G238G	TTTTGGCATTTCC	.	141.0	60.0	89.0	0.0	.	228	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	147743516	147743516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	AFF2	NM_002025	exon3	c.A268G	p.N90D	CATTCTAATCAGA	.	394.0	176.0	248.0	0.0	.	679	.	.	Atlas-SNP
EMD	2010	hgsc.bcm.edu	hg19	X	153607910	153607910	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	EMD	NM_000117	exon1	c.G66T	p.P22P	CATCCCGCACGGG	.	100.0	46.0	77.0	0.0	.	25	.	.	Atlas-SNP
CTAG2	30848	hgsc.bcm.edu	hg19	X	153880820	153880820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CTAG2	NM_020994	exon2	c.C355A	p.P119T	CCCCTGGTCGGGG	.	178.0	88.0	134.0	0.0	.	88	.	.	Atlas-SNP
VBP1	7411	hgsc.bcm.edu	hg19	X	154444801	154444801	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	VBP1	NM_003372	exon1	c.C42G	p.A14A	AATGGCCACAGGG	.	130.0	72.0	69.0	0.0	.	20	.	.	Atlas-SNP
C9orf50	375759	hgsc.bcm.edu	hg19	9	132375462	132375471	+	Frame_Shift_Del	DEL	GAACAGAAGG	GAACAGAAGG	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GAACAGAAGG	GAACAGAAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	C9orf50	NM_199350	exon6	c.1104_1113del	p.368_371del	.	.	87.0	25.0	105.0	0.0	.	25	.	.	Atlas-Indel,Pindel
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70411411	70411411	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LMBRD1	NM_018368	exon11	c.1008delA	p.G336fs	.	.	240.0	99.0	211.0	0.0	.	61	.	.	Atlas-Indel,Pindel
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266127	41266150	+	In_Frame_Del	DEL	ACAGCTCCTTCTCTGAGTGGTAAA	ACAGCTCCTTCTCTGAGTGGTAAA	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	ACAGCTCCTTCTCTGAGTGGTAAA	ACAGCTCCTTCTCTGAGTGGTAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	CTNNB1,gallbladder,other,+2,3	CTNNB1	NM_001098210	exon3	c.123_146del	p.41_49del	.	.	95.0	63.0	195.0	0.0	.	4904	.	.	Atlas-Indel,Pindel
IFIT5	24138	hgsc.bcm.edu	hg19	10	91174557	91174558	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	IFIT5	NM_012420	exon1	c.2_3insGA	p.M1fs	.	.	78.0	45.0	40.0	0.0	.	32	.	.	Atlas-Indel,Pindel
NCSTN	23385	hgsc.bcm.edu	hg19	1	160314603	160314606	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NCSTN	NM_015331	exon2	c.176_179del	p.59_60del	.	.	180.0	116.0	122.0	0.0	.	64	.	.	Atlas-Indel,Pindel
DGAT1	8694	hgsc.bcm.edu	hg19	8	145540683	145540684	+	Splice_Site	INS	-	-	CC	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	DGAT1	NM_012079	exon16	c.1248+2->GG	.	.	.	116.0	58.0	68.0	0.0	.	26	.	.	Atlas-Indel,Pindel
LGSN	51557	hgsc.bcm.edu	hg19	6	63990332	63990334	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LGSN	NM_016571	exon4	c.1123_1125del	p.375_375del	.	.	76.0	39.0	74.0	0.0	.	82	.	.	Atlas-Indel,Pindel
ACSM5	54988	hgsc.bcm.edu	hg19	16	20432662	20432663	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ACSM5	NM_017888	exon5	c.706_707insC	p.A236fs	.	.	67.0	30.0	86.0	0.0	.	101	.	.	Atlas-Indel,Pindel
NFAT5	10725	hgsc.bcm.edu	hg19	16	69703941	69703943	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NFAT5	NM_001113178	exon8	c.1430_1432del	p.477_478del	.	.	233.0	85.0	305.0	0.0	.	184	.	.	Atlas-Indel,Pindel
ZNF687	57592	hgsc.bcm.edu	hg19	1	151262629	151262630	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ZNF687	NM_020832	exon7	c.2996_2997insG	p.E999fs	.	.	164.0	30.0	114.0	0.0	.	94	.	.	Atlas-Indel,Pindel
XPO6	23214	hgsc.bcm.edu	hg19	16	28137133	28137141	+	In_Frame_Del	DEL	CGGCAGTCG	CGGCAGTCG	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	CGGCAGTCG	CGGCAGTCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	XPO6	NM_015171	exon13	c.1636_1644del	p.546_548del	.	.	50.0	17.0	70.0	0.0	.	177	.	.	Atlas-Indel,Pindel
CCDC83	220047	hgsc.bcm.edu	hg19	11	85622367	85622411	+	In_Frame_Del	DEL	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	TTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	CCDC83	NM_173556	exon8	c.715_759del	p.239_253del	.	.	139.0	15.0	228.0	0.0	.	48	.	.	Atlas-Indel,Pindel
SLC41A3	54946	hgsc.bcm.edu	hg19	3	125775394	125775416	+	Frame_Shift_Del	DEL	ATGGCCAGGCAATGCACCACGAT	ATGGCCAGGCAATGCACCACGAT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	ATGGCCAGGCAATGCACCACGAT	ATGGCCAGGCAATGCACCACGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SLC41A3	NM_001008487	wholegene	.	.	.	.	75.0	14.0	139.0	0.0	.	80	.	.	Atlas-Indel,Pindel
KCNN3	3782	hgsc.bcm.edu	hg19	1	154842221	154842222	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTA	rs3831942	alternate_allele	TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KCNN3	NM_001204087	exon1	c.220_221insTAGCAGCAGCAGCAGCAG	p.Q74delinsX	.	.	136.0	41.0	73.0	0.0	.	141	.	.	Atlas-Indel,Pindel
SHOC2	8036	hgsc.bcm.edu	hg19	10	112724768	112724768	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	SHOC2	NM_007373	exon2	c.651delC	p.L217fs	.	.	132.0	42.0	99.0	0.0	.	49	.	.	Atlas-Indel,Pindel
KRTAP5-6	440023	hgsc.bcm.edu	hg19	11	1718512	1718532	+	In_Frame_Del	DEL	GGCTGTGGGGGCTGTGGCTCT	GGCTGTGGGGGCTGTGGCTCT	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	GGCTGTGGGGGCTGTGGCTCT	GGCTGTGGGGGCTGTGGCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	KRTAP5-6	NM_001012416	exon1	c.36_56del	p.12_19del	.	.	140.0	44.0	154.0	0.0	.	18	.	.	Atlas-Indel,Pindel
ASXL1	171023	hgsc.bcm.edu	hg19	20	31023559	31023580	+	Frame_Shift_Del	DEL	AGGCTGACACTAGAGAAGCTGC	AGGCTGACACTAGAGAAGCTGC	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	AGGCTGACACTAGAGAAGCTGC	AGGCTGACACTAGAGAAGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	ASXL1	NM_015338	exon12	c.3043_3064del	p.1015_1022del	.	.	59.0	24.0	75.0	0.0	.	1114	.	.	Atlas-Indel,Pindel
NSUN4	387338	hgsc.bcm.edu	hg19	1	46810731	46810732	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	NSUN4	NM_199044	exon2	c.352_353insT	p.P118fs	.	.	83.0	36.0	74.0	0.0	.	26	.	.	Atlas-Indel,Pindel
HECW1	23072	hgsc.bcm.edu	hg19	7	43484497	43484497	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	HECW1	NM_015052	exon11	c.1725delC	p.G575fs	.	.	53.0	14.0	50.0	0.0	.	540	.	.	Pindel
LRRC7	57554	hgsc.bcm.edu	hg19	1	70504419	70504419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	LRRC7	NM_020794	exon19	c.2797delT	p.S933fs	.	.	258.0	66.0	303.0	0.0	.	400	.	.	Pindel
TRPM2	7226	hgsc.bcm.edu	hg19	21	45811258	45811258	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	TRPM2	NM_003307	exon11	c.1543delA	p.T515fs	.	.	98.0	29.0	140.0	0.0	.	196	.	.	Pindel
MEN1	4221	hgsc.bcm.edu	hg19	11	64573793	64573793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	MEN1	NM_130800	exon7	c.976delT	p.Y326fs	.	.	94.0	45.0	201.0	0.0	.	442	.	.	Pindel
OR2F2	135948	hgsc.bcm.edu	hg19	7	143633258	143633258	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A7IH-01A-11D-A33K-10	TCGA-CC-A7IH-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d3ad3bc-b5be-4233-a04b-909afa0302cf	aa24c0b3-7197-431d-b840-98fb061c54f6	.	OR2F2	NM_001004685	exon1	c.932delT	p.L311X	.	.	59.0	19.0	50.0	0.0	.	63	.	.	Pindel
