Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MXRA8	54587	hgsc.bcm.edu	hg19	1	1290242	1290242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MXRA8	NM_032348	exon5	c.C769A	p.L257M	TACGCAGTGAGAA	.	118.0	49.0	111.0	0.0	.	28	.	.	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	hg19	1	6206301	6206301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHD5	NM_015557	exon11	c.G1773A	p.W591X	CATCATCCACTCT	.	73.0	15.0	57.0	0.0	.	267	.	.	Atlas-SNP
LRRC38	126755	hgsc.bcm.edu	hg19	1	13839949	13839949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRC38	NM_001010847	exon1	c.T140C	p.L47P	CTGGGCAGCCCGC	.	52.0	19.0	46.0	0.0	.	12	.	.	Atlas-SNP
PRDM2	7799	hgsc.bcm.edu	hg19	1	14108238	14108238	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRDM2	NM_015866	exon8	c.A3948T	p.T1316T	TGTGACAGCCACA	.	83.0	38.0	79.0	0.0	.	147	.	.	Atlas-SNP
EPHA8	2046	hgsc.bcm.edu	hg19	1	22895781	22895781	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHA8	NM_020526	exon2	c.95-1G>A	.	TTTACAGTGAATT	.	55.0	11.0	62.0	0.0	.	221	.	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	hg19	1	23762387	23762387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASAP3	NM_017707	exon17	c.A1706C	p.N569T	TGCCCATTGGCAA	.	117.0	21.0	114.0	0.0	.	65	.	.	Atlas-SNP
GPR3	2827	hgsc.bcm.edu	hg19	1	27720703	27720703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR3	NM_005281	exon2	c.G401C	p.R134P	TCGACCGCTACCT	.	31.0	13.0	39.0	0.0	.	23	.	.	Atlas-SNP
SPOCD1	90853	hgsc.bcm.edu	hg19	1	32265012	32265012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPOCD1	NM_144569	exon7	c.C1858A	p.L620I	TCCATAGTACCTC	.	238.0	110.0	191.0	0.0	.	109	.	.	Atlas-SNP
ZBTB8B	728116	hgsc.bcm.edu	hg19	1	32950917	32950917	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZBTB8B	NM_001145720	exon4	c.A1386C	p.P462P	CTGGCCAATCTAT	.	148.0	34.0	107.0	0.0	.	28	.	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	hg19	1	36439043	36439043	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_024852	exon5	c.A589T	p.R197W	GGGGGCAGGGAAG	.	177.0	27.0	110.0	0.0	.	.	.	.	Atlas-SNP
SMAP2	64744	hgsc.bcm.edu	hg19	1	40882562	40882562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SMAP2	NM_022733	exon9	c.A958G	p.M320V	GTAGGCATGGTTG	.	276.0	40.0	213.0	0.0	.	48	.	.	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	hg19	1	43110399	43110399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC30	NM_001080850	exon13	c.A1811T	p.Q604L	AATTACAGGAAAA	.	30.0	9.0	21.0	0.0	.	78	.	.	Atlas-SNP
ST3GAL3	6487	hgsc.bcm.edu	hg19	1	44395833	44395833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ST3GAL3	NM_001270463	exon8	c.A584G	p.K195R	AGAGAAAGAGTTT	.	61.0	15.0	57.0	0.0	.	56	.	.	Atlas-SNP
DMRTB1	63948	hgsc.bcm.edu	hg19	1	53932266	53932266	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMRTB1	NM_033067	exon4	c.962-2A>T	.	CTTCACAGATGAC	.	233.0	112.0	209.0	0.0	.	38	.	.	Atlas-SNP
YIPF1	54432	hgsc.bcm.edu	hg19	1	54332055	54332055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	YIPF1	NM_018982	exon9	c.A649G	p.I217V	ACAGTATCTGAAA	.	313.0	136.0	282.0	0.0	.	30	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79411969	79411969	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELTD1	NM_022159	exon3	c.C315A	p.T105T	ACAGACGGTTCCA	.	128.0	54.0	101.0	0.0	.	143	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94543350	94543350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	ABCA4,NS,carcinoma,0,1	ABCA4	NM_000350	exon11	c.A1450G	p.K484E	GGCCCTTGTAGAG	.	129.0	37.0	126.0	0.0	.	275	.	.	Atlas-SNP
PTBP2	58155	hgsc.bcm.edu	hg19	1	97271990	97271990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTBP2	NM_021190	exon10	c.A1060G	p.S354G	CCCCAAAGTCTGT	.	65.0	23.0	59.0	0.0	.	62	.	.	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	hg19	1	102269846	102269846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OLFM3	NM_058170	exon6	c.T1325A	p.V442E	AACAGCACCTGGT	.	86.0	33.0	67.0	0.0	.	178	.	.	Atlas-SNP
SLC25A24	29957	hgsc.bcm.edu	hg19	1	108742645	108742645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC25A24	NM_013386	exon1	c.T116A	p.V39E	ATGTCCACCACTC	.	108.0	63.0	76.0	0.0	.	65	.	.	Atlas-SNP
PHTF1	10745	hgsc.bcm.edu	hg19	1	114240970	114240970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PHTF1	NM_006608	exon17	c.A2182T	p.N728Y	AGGGATTCATTGT	.	70.0	18.0	67.0	0.0	.	69	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117142910	117142910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGSF3	NM_001542	exon8	c.C1742G	p.S581C	TCAAAGGAGTCGC	.	44.0	19.0	46.0	0.0	.	294	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144879542	144879542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	PDE4DIP,NS,carcinoma,0,2	PDE4DIP	NM_014644	exon27	c.T3908C	p.L1303P	TCCTTGAGGCTGT	.	62.0	3.0	41.0	1.0	.	817	.	.	Atlas-SNP
SF3B4	10262	hgsc.bcm.edu	hg19	1	149898428	149898428	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SF3B4	NM_005850	exon3	c.C546T	p.S182S	ACCCTTGGAGTCC	.	135.0	25.0	89.0	0.0	.	37	.	.	Atlas-SNP
MRPS21	54460	hgsc.bcm.edu	hg19	1	150266814	150266814	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MRPS21	NM_018997	exon1	c.A28T	p.R10W	ATCGCCAGGACTG	.	309.0	27.0	196.0	0.0	.	8	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152284916	152284916	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLG	NM_002016	exon3	c.G2446C	p.V816L	GTCTTACTCCAGT	.	148.0	37.0	124.0	0.0	.	900	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152284917	152284917	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLG	NM_002016	exon3	c.A2445T	p.G815G	TCTTACTCCAGTG	.	150.0	40.0	123.0	0.0	.	900	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152326656	152326656	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLG2	NM_001014342	exon3	c.C3606A	p.S1202S	TCCAGTGGACTGA	.	124.0	26.0	96.0	0.0	.	431	.	.	Atlas-SNP
SPRR4	163778	hgsc.bcm.edu	hg19	1	152944448	152944448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPRR4	NM_173080	exon2	c.C82T	p.Q28X	CCTTGTCAGCCAC	.	238.0	69.0	174.0	0.0	.	8	.	.	Atlas-SNP
AQP10	89872	hgsc.bcm.edu	hg19	1	154296109	154296109	+	Silent	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AQP10	NM_080429	exon5	c.G534C	p.L178L	CATCCTGGACAGA	.	114.0	16.0	98.0	0.0	.	44	.	.	Atlas-SNP
ADAR	103	hgsc.bcm.edu	hg19	1	154569745	154569745	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAR	NM_015840	exon6	c.1935-2A>G	.	GGAACCTGACAGG	.	79.0	36.0	63.0	0.0	.	113	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160098468	160098468	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP1A2	NM_000702	exon9	c.C1044A	p.R348R	CAAGCGCATGGCA	.	154.0	31.0	104.0	0.0	.	167	.	.	Atlas-SNP
RCSD1	92241	hgsc.bcm.edu	hg19	1	167659345	167659345	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RCSD1	NM_052862	exon4	c.T258A	p.I86I	TCTGATTGAGAAG	.	114.0	39.0	98.0	0.0	.	64	.	.	Atlas-SNP
GPR161	23432	hgsc.bcm.edu	hg19	1	168054803	168054803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR161	NM_001267609	exon7	c.A1616C	p.E539A	CCTTCTTCGATGC	.	139.0	67.0	85.0	0.0	.	56	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177250137	177250137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM5B	NM_021165	exon8	c.A1825C	p.S609R	GAGGGCAGCTTTC	.	84.0	13.0	65.0	0.0	.	191	.	.	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	hg19	1	197102525	197102525	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASPM	NM_001206846	exon6	c.A2374T	p.R792W	ACCGCCTAGCTTC	.	175.0	62.0	115.0	0.0	.	444	.	.	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201196213	201196213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGFN1	NM_001164586	exon23	c.G10990T	p.D3664Y	AGCACTGACCTGC	.	225.0	72.0	171.0	0.0	.	220	.	.	Atlas-SNP
NAV1	89796	hgsc.bcm.edu	hg19	1	201757764	201757764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NAV1	NM_020443	exon10	c.A3164G	p.D1055G	CGGACGATGGTGA	.	48.0	12.0	36.0	0.0	.	143	.	.	Atlas-SNP
TMEM183B	653659	hgsc.bcm.edu	hg19	1	202987649	202987649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001079809	exon6	c.A749C	p.Q250P	ACAGACAGGAACC	.	302.0	124.0	250.0	0.0	.	.	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207649619	207649619	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CR2	NM_001006658	exon15	c.G2757T	p.G919G	TAACGGGAACCAT	.	115.0	61.0	79.0	0.0	.	164	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207649620	207649620	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CR2	NM_001006658	exon15	c.A2758C	p.N920H	AACGGGAACCATA	.	117.0	63.0	79.0	0.0	.	164	.	.	Atlas-SNP
TMEM206	55248	hgsc.bcm.edu	hg19	1	212558622	212558622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM206	NM_001198862	exon5	c.G672T	p.Q224H	CACAGTCTGATTG	.	313.0	50.0	225.0	0.0	.	41	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214537999	214537999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPN14	NM_005401	exon18	c.G3291T	p.Q1097H	GACCGACTGGATC	.	227.0	36.0	146.0	0.0	.	168	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228550304	228550304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OBSCN	NM_001271223	exon91	c.A21560C	p.E7187A	ACCAGGAGGTCAC	.	278.0	103.0	194.0	0.0	.	2142	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245850812	245850812	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KIF26B	NM_018012	exon12	c.C4527A	p.V1509V	GAGGGTCGTGGAT	.	213.0	117.0	157.0	0.0	.	343	.	.	Atlas-SNP
OR2L5	81466	hgsc.bcm.edu	hg19	1	248186105	248186105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001258284	exon1	c.C856A	p.P286T	CTCAACCCCATCA	.	84.0	34.0	66.0	0.0	.	.	.	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27455440	27455440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CAD	NM_004341	exon18	c.A2770G	p.T924A	TGGGGCACCACCC	.	164.0	82.0	151.0	0.0	.	199	.	.	Atlas-SNP
SPAST	6683	hgsc.bcm.edu	hg19	2	32314626	32314626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPAST	NM_199436	exon3	c.A538G	p.K180E	CAAGCTAAAATGA	.	103.0	26.0	81.0	0.0	.	61	.	.	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	hg19	2	97335890	97335890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FER1L5	NM_001113382	exon17	c.A1382T	p.Y461F	TAGCTTATCGAGG	.	134.0	35.0	125.0	0.0	.	113	.	.	Atlas-SNP
TMEM131	23505	hgsc.bcm.edu	hg19	2	98429012	98429012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM131	NM_015348	exon17	c.A1735G	p.I579V	TTTTTATAGCCAA	.	246.0	52.0	191.0	0.0	.	258	.	.	Atlas-SNP
KIAA1211L	343990	hgsc.bcm.edu	hg19	2	99449345	99449345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_207362	exon4	c.G355T	p.D119Y	TCCGATCACACAC	.	63.0	12.0	64.0	0.0	.	.	.	.	Atlas-SNP
REV1	51455	hgsc.bcm.edu	hg19	2	100058804	100058804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	REV1	NM_001037872	exon5	c.A478G	p.I160V	TGGCTATATTGCT	.	141.0	33.0	100.0	0.0	.	100	.	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105914979	105914979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TGFBRAP1	NM_004257	exon3	c.A872C	p.Q291P	AAGTCCTGTAGGA	.	88.0	23.0	83.0	0.0	.	70	.	.	Atlas-SNP
IL36G	56300	hgsc.bcm.edu	hg19	2	113742493	113742493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	IL36G,NS,malignant_melanoma,0,1	IL36G	NM_019618	exon5	c.G377T	p.R126M	CTGGTAGGACCTC	.	189.0	43.0	117.0	0.0	.	26	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141459798	141459798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRP1B	NM_018557	exon39	c.G6214T	p.G2072X	TCCCTCCAGTCTC	.	263.0	60.0	168.0	0.0	.	1315	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152512686	152512686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NEB	NM_004543	exon49	c.T6476C	p.M2159T	CGATTCATATTCC	.	108.0	20.0	95.0	0.0	.	1697	.	.	Atlas-SNP
STK39	27347	hgsc.bcm.edu	hg19	2	169020389	169020389	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK39	NM_013233	exon4	c.T432A	p.G144G	CATTGAACCTAAG	.	91.0	16.0	83.0	0.0	.	95	.	.	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	hg19	2	178769916	178769916	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PDE11A	NM_001077197	exon5	c.322-2A>T	.	ATAACCTGGGACA	.	57.0	14.0	40.0	0.0	.	283	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179642164	179642164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TTN	NM_001267550	exon26	c.T4628A	p.V1543E	AAAATCACTGAAA	.	52.0	34.0	48.0	0.0	.	18412	.	.	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	hg19	2	191362167	191362167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MFSD6	NM_017694	exon7	c.A1894G	p.K632E	CCAGACAAGACAA	.	63.0	14.0	40.0	0.0	.	58	.	.	Atlas-SNP
ALS2CR11	151254	hgsc.bcm.edu	hg19	2	202356442	202356442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ALS2CR11	NM_001168221	exon15	c.A4622T	p.Q1541L	TTTTCCTGAACAG	.	4.0	4.0	0.0	0.0	.	194	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222301134	222301134	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EPHA4	NM_004438	exon13	c.A2331T	p.A777A	GTAAGCTGCTTCC	.	93.0	23.0	84.0	0.0	.	263	.	.	Atlas-SNP
ALPP	250	hgsc.bcm.edu	hg19	2	233243696	233243696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ALPP	NM_001632	exon2	c.C92A	p.P31Q	AGAACCCGGACTT	.	109.0	16.0	77.0	0.0	.	53	.	.	Atlas-SNP
SH3BP4	23677	hgsc.bcm.edu	hg19	2	235951205	235951205	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SH3BP4	NM_014521	exon4	c.G1792T	p.E598X	GACCAGGAGGCCA	.	130.0	94.0	116.0	0.0	.	109	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10382000	10382000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP2B2	NM_001001331	exon21	c.A3163T	p.S1055C	AGCAGCTGAATGG	.	73.0	16.0	69.0	0.0	.	304	.	.	Atlas-SNP
UBP1	7342	hgsc.bcm.edu	hg19	3	33441756	33441756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	UBP1	NM_014517	exon11	c.A1105G	p.T369A	GGATCGTAGCTGA	.	54.0	6.0	60.0	0.0	.	42	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	ACCTGGACTCTGG	.	167.0	34.0	160.0	0.0	.	4904	.	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	hg19	3	45187699	45187699	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CDCP1	NM_178181	exon1	c.A81T	p.A27A	CTCACCTGCCCCG	.	83.0	14.0	89.0	0.0	.	61	.	.	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48455150	48455150	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLXNB1	NM_001130082	exon23	c.A4464T	p.A1488A	CTGGGCTGCCACA	.	74.0	14.0	75.0	0.0	.	150	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48689876	48689876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CELSR3	NM_001407	exon11	c.C5745A	p.C1915X	CTGGATGCAGCCA	.	85.0	11.0	109.0	0.0	.	237	.	.	Atlas-SNP
QRICH1	54870	hgsc.bcm.edu	hg19	3	49095208	49095208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	QRICH1	NM_198880	exon3	c.A425T	p.Q142L	GGTGCCTGGCCTT	.	75.0	18.0	76.0	0.0	.	48	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49166551	49166551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LAMB2	NM_002292	exon13	c.C1633G	p.Q545E	TGTGCTGGCGGCA	.	53.0	26.0	45.0	0.0	.	156	.	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	hg19	3	49698355	49698355	+	Missense_Mutation	SNP	C	C	G	rs141830771	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BSN	NM_003458	exon6	c.C9077G	p.T3026S	GCTGCACCACTCC	.	49.0	13.0	46.0	0.0	.	272	.	C|1.000;T|0.000	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	hg19	3	49832413	49832413	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CDHR4	NM_001007540	exon9	c.T1152A	p.P384P	GCTGGCAGGGTTG	.	139.0	35.0	121.0	0.0	.	37	.	.	Atlas-SNP
LRTM1	57408	hgsc.bcm.edu	hg19	3	54952542	54952542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRTM1	NM_020678	exon3	c.A982G	p.T328A	CATTGGTTTGAGC	.	141.0	38.0	145.0	0.0	.	52	.	.	Atlas-SNP
DNAH12	201625	hgsc.bcm.edu	hg19	3	57394214	57394214	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNAH12	NM_178504	exon40	c.G6012T	p.L2004L	AGCAATCAGCTCT	.	117.0	67.0	112.0	0.0	.	182	.	.	Atlas-SNP
MITF	4286	hgsc.bcm.edu	hg19	3	70008478	70008478	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MITF	NM_198159	exon9	c.A1068G	p.R356R	TATCCGAAAGTTG	.	216.0	32.0	216.0	0.0	.	156	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77666666	77666666	+	Missense_Mutation	SNP	A	A	G	rs372099694		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ROBO2	NM_002942	exon22	c.A3296G	p.Y1099C	TCAGCTATGACAG	.	63.0	44.0	64.0	0.0	.	527	.	.	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100948247	100948247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPG2	NM_016247	exon17	c.G3610T	p.E1204X	TGCTCTCATACAT	.	74.0	9.0	91.0	0.0	.	164	.	.	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100976471	100976471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPG2	NM_016247	exon10	c.G1055T	p.S352I	AAGTTACTGATTG	.	92.0	60.0	92.0	0.0	.	164	.	.	Atlas-SNP
BTLA	151888	hgsc.bcm.edu	hg19	3	112185077	112185077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BTLA	NM_181780	exon5	c.G748T	p.E250X	TGTTTTCTTCCAG	.	74.0	21.0	63.0	0.0	.	22	.	.	Atlas-SNP
C3orf17	25871	hgsc.bcm.edu	hg19	3	112736436	112736436	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C3orf17	NM_015412	exon2	c.A120T	p.A40A	TACAGCTGCAATG	.	99.0	42.0	93.0	0.0	.	37	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	113004363	113004363	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	BOC	NM_033254	exon19	c.C3108T	p.A1036A	GAGAGCCCCCGAC	.	112.0	69.0	95.0	0.0	.	139	.	.	Atlas-SNP
SPICE1	152185	hgsc.bcm.edu	hg19	3	113187199	113187199	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPICE1	NM_144718	exon10	c.A942G	p.S314S	ACCTGATGATATG	.	102.0	24.0	86.0	0.0	.	130	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140281142	140281142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLSTN2	NM_022131	exon13	c.C2204A	p.S735Y	GCTACTCCATCTA	.	35.0	20.0	33.0	0.0	.	190	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195507996	195507996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C10455A	p.H3485Q	GGTGGTGTGACCT	.	133.0	15.0	160.0	0.0	.	1505	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195509863	195509863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C8588A	p.T2863N	AGAGAGGTGGCGT	.	168.0	12.0	197.0	0.0	.	1505	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195515685	195515685	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC4	NM_018406	exon2	c.C2766A	p.I922I	CAGGCTGATAGTG	.	108.0	27.0	135.0	0.0	.	1505	.	.	Atlas-SNP
WFS1	7466	hgsc.bcm.edu	hg19	4	6288867	6288867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	WFS1,caecum,carcinoma,0,3	WFS1	NM_001145853	exon3	c.A280T	p.R94W	CTGGAGAGGGCCA	.	32.0	16.0	108.0	0.0	.	71	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13616094	13616094	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_148894	exon4	c.A900G	p.L300L	CAGAATTAAATTA	.	33.0	21.0	75.0	0.0	.	.	.	.	Atlas-SNP
RFC1	5981	hgsc.bcm.edu	hg19	4	39313096	39313096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RFC1	NM_002913	exon12	c.A1457G	p.K486R	TTGGATTTCTTGC	.	38.0	7.0	50.0	0.0	.	114	.	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	hg19	4	46967019	46967019	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GABRA4	NM_000809	exon8	c.C1102T	p.Q368X	CTCTCTGCACTGG	.	72.0	16.0	138.0	0.0	.	129	.	.	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	hg19	4	52943036	52943036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPATA18	NM_145263	exon7	c.A850T	p.R284W	AAGGTCAGGAGAC	.	129.0	67.0	264.0	0.0	.	222	.	.	Atlas-SNP
SULT1B1	27284	hgsc.bcm.edu	hg19	4	70620914	70620914	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SULT1B1	NM_014465	exon2	c.C22T	p.L8L	TTCGCAGAATATC	.	74.0	38.0	125.0	0.0	.	46	.	.	Atlas-SNP
SOWAHB	345079	hgsc.bcm.edu	hg19	4	77818168	77818168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_001029870	exon1	c.C835T	p.P279S	GAGCGGGGCCGGG	.	14.0	9.0	19.0	0.0	.	.	.	.	Atlas-SNP
SEC31A	22872	hgsc.bcm.edu	hg19	4	83793196	83793196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SEC31A	NM_001077206	exon7	c.A683C	p.Q228P	ACCATCTGAGTAG	.	108.0	41.0	212.0	0.0	.	227	.	.	Atlas-SNP
THAP9	79725	hgsc.bcm.edu	hg19	4	83838969	83838969	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	THAP9	NM_024672	exon5	c.T1604A	p.L535Q	GGCCTCTGTTGCC	.	33.0	16.0	70.0	0.0	.	65	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85623579	85623579	+	Silent	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WDFY3	NM_014991	exon56	c.A8523C	p.A2841A	TACATCTGCCATA	.	84.0	43.0	200.0	0.0	.	314	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123185451	123185451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KIAA1109	NM_015312	exon43	c.A7186C	p.N2396H	GATTTCAACACTG	.	60.0	16.0	130.0	0.0	.	424	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155507589	155507589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FGA	NM_000508	exon5	c.C992A	p.T331N	CTTCCAGTACTTC	.	75.0	16.0	136.0	0.0	.	179	.	.	Atlas-SNP
C4orf47	441054	hgsc.bcm.edu	hg19	4	186361844	186361844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C4orf47	NM_001114357	exon5	c.A685G	p.T229A	TCAAATACTTTTA	.	111.0	63.0	168.0	0.0	.	13	.	.	Atlas-SNP
PRKAA1	5562	hgsc.bcm.edu	hg19	5	40763061	40763061	+	Missense_Mutation	SNP	T	T	C	rs373496949		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRKAA1	NM_206907	exon10	c.A1544G	p.Y515C	GATCGATAGTTGC	.	101.0	27.0	117.0	0.0	.	27	.	.	Atlas-SNP
SREK1IP1	285672	hgsc.bcm.edu	hg19	5	64023956	64023956	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SREK1IP1	NM_173829	exon4	c.A256T	p.K86X	TCAATTTGATTTT	.	203.0	51.0	236.0	0.0	.	28	.	.	Atlas-SNP
MARVELD2	153562	hgsc.bcm.edu	hg19	5	68715680	68715680	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MARVELD2	NM_001244734	exon2	c.G468A	p.R156R	TCCCCGGGATCCC	.	105.0	39.0	106.0	0.0	.	49	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95236690	95236690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELL2	NM_012081	exon6	c.A836G	p.D279G	CGTCTGTCTATTT	.	163.0	73.0	217.0	0.0	.	63	.	.	Atlas-SNP
SLCO4C1	353189	hgsc.bcm.edu	hg19	5	101631729	101631729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLCO4C1	NM_180991	exon1	c.C238G	p.L80V	CGGACAGCGACAG	.	99.0	29.0	147.0	0.0	.	113	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109049407	109049407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MAN2A1	NM_002372	exon2	c.T322G	p.S108A	CAATTATCCCTCT	.	85.0	23.0	97.0	0.0	.	136	.	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112849665	112849665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	YTHDC2	NM_022828	exon1	c.T73C	p.C25R	TCGCCTTGTGGCC	.	70.0	21.0	86.0	0.0	.	118	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118513717	118513717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMXL1	NM_005509	exon28	c.A6913T	p.N2305Y	CTTTTGAATTCTT	.	89.0	15.0	102.0	0.0	.	268	.	.	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127484507	127484507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC12A2	NM_001046	exon12	c.A1943G	p.N648S	GGAAAAATAATGA	.	74.0	9.0	92.0	0.0	.	119	.	.	Atlas-SNP
P4HA2	8974	hgsc.bcm.edu	hg19	5	131552947	131552947	+	Missense_Mutation	SNP	G	G	A	rs370556720		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	P4HA2	NM_001017974	exon4	c.C274T	p.R92W	TTAGCCGCTTCAC	.	49.0	18.0	73.0	0.0	.	72	.	.	Atlas-SNP
FAM13B	51306	hgsc.bcm.edu	hg19	5	137354837	137354837	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM13B	.	.	.	.	CTTTTCTGCCAAA	.	77.0	33.0	95.0	0.0	.	46	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140432008	140432008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PCDHB1	NM_013340	exon1	c.A953G	p.D318G	ACATTGACATTCA	.	89.0	22.0	129.0	0.0	.	148	.	.	Atlas-SNP
PCDHB8	56128	hgsc.bcm.edu	hg19	5	140558117	140558117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PCDHB8	NM_019120	exon1	c.A502G	p.I168V	AACAATATTGAGA	.	352.0	71.0	512.0	0.0	.	199	.	.	Atlas-SNP
JAKMIP2	9832	hgsc.bcm.edu	hg19	5	147030071	147030071	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JAKMIP2	NM_001270941	exon4	c.C667T	p.L223L	TTTCCAGGGAAAA	.	138.0	51.0	163.0	0.0	.	154	.	.	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	hg19	5	150678223	150678223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SLC36A3	NM_181774	exon2	c.C150A	p.H50Q	CAACAAGTGGATC	.	73.0	15.0	94.0	0.0	.	54	.	.	Atlas-SNP
SPARC	6678	hgsc.bcm.edu	hg19	5	151045983	151045983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SPARC	NM_003118	exon8	c.A673T	p.N225Y	ACATGTTATAGTT	.	88.0	46.0	97.0	0.0	.	38	.	.	Atlas-SNP
FAM114A2	10827	hgsc.bcm.edu	hg19	5	153413430	153413430	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM114A2	NM_018691	exon4	c.A324G	p.S108S	GACATTTGAAATG	.	151.0	41.0	166.0	0.0	.	51	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15501254	15501254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	JARID2	NM_004973	exon8	c.A2062G	p.R688G	ATCCCCAGAACTG	.	80.0	9.0	99.0	0.0	.	135	.	.	Atlas-SNP
HIST1H3I	8354	hgsc.bcm.edu	hg19	6	27839739	27839739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HIST1H3I	NM_003533	exon1	c.A355C	p.T119P	TAATAGTGACGCG	.	101.0	39.0	111.0	0.0	.	28	.	.	Atlas-SNP
OR2B2	81697	hgsc.bcm.edu	hg19	6	27879561	27879561	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR2B2	NM_033057	exon1	c.T537C	p.C179C	GACTTCACAGAAG	.	76.0	28.0	75.0	0.0	.	54	.	.	Atlas-SNP
TRIM27	5987	hgsc.bcm.edu	hg19	6	28876789	28876789	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRIM27	NM_006510	exon5	c.A847T	p.K283X	GACATTTTTGGGC	.	201.0	45.0	135.0	0.0	.	26	.	.	Atlas-SNP
ZNF311	282890	hgsc.bcm.edu	hg19	6	28963167	28963167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF311	NM_001010877	exon7	c.G1612T	p.G538W	ACTTCCCACTGAA	.	87.0	8.0	121.0	0.0	.	59	.	.	Atlas-SNP
ATF6B	1388	hgsc.bcm.edu	hg19	6	32085719	32085719	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATF6B	NM_004381	exon12	c.A1341T	p.P447P	CTGAACTGGCTCT	.	107.0	32.0	90.0	0.0	.	40	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32163815	32163815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOTCH4	NM_004557	exon30	c.C5411T	p.A1804V	ACGTCCGCCGGCG	.	21.0	13.0	9.0	0.0	.	201	.	.	Atlas-SNP
RCAN2	10231	hgsc.bcm.edu	hg19	6	46424645	46424645	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RCAN2	NM_001251973	exon2	c.A69G	p.G23G	AAGTCCTCCATCT	.	86.0	17.0	68.0	0.0	.	39	.	.	Atlas-SNP
GPR116	221395	hgsc.bcm.edu	hg19	6	46828555	46828555	+	Missense_Mutation	SNP	G	G	A	rs375753155		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GPR116	NM_015234	exon16	c.C2276T	p.A759V	TGTTCCGCTTTGT	.	78.0	37.0	91.0	0.0	.	133	.	.	Atlas-SNP
DEFB113	245927	hgsc.bcm.edu	hg19	6	49937328	49937328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DEFB113	NM_001037729	exon1	c.T11G	p.L4R	ATACAAAGTATCT	.	89.0	8.0	52.0	0.0	.	18	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	70092727	70092727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	BAI3,NS,carcinoma,0,1	BAI3	NM_001704	exon31	c.T4280C	p.V1427A	AGAAGGTCATGCA	.	74.0	26.0	83.0	0.0	.	451	.	.	Atlas-SNP
C6orf57	135154	hgsc.bcm.edu	hg19	6	71289154	71289154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C6orf57	NM_145267	exon2	c.T102G	p.S34R	AACAAGTTCTTCT	.	102.0	30.0	94.0	0.0	.	13	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74407156	74407156	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CD109	NM_133493	exon2	c.C108T	p.I36I	GATCATCAGGCCC	.	71.0	23.0	71.0	0.0	.	170	.	.	Atlas-SNP
HTR1B	3351	hgsc.bcm.edu	hg19	6	78172967	78172967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HTR1B	NM_000863	exon1	c.C154A	p.L52M	TAACCAGCAGTAC	.	149.0	95.0	162.0	0.0	.	55	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83862023	83862023	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DOPEY1	NM_015018	exon30	c.A6066G	p.A2022A	ACCTGCAATGGAA	.	109.0	36.0	124.0	0.0	.	190	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83862028	83862028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DOPEY1	NM_015018	exon30	c.A6071C	p.E2024A	CAATGGAAACCGC	.	108.0	37.0	124.0	0.0	.	190	.	.	Atlas-SNP
FUT9	10690	hgsc.bcm.edu	hg19	6	96651917	96651917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	FUT9,colon,carcinoma,0,1	FUT9	NM_006581	exon3	c.A886T	p.S296C	TCTCCCAGTGAGC	.	56.0	8.0	51.0	0.0	.	79	.	.	Atlas-SNP
MICAL1	64780	hgsc.bcm.edu	hg19	6	109766714	109766714	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MICAL1	NM_022765	exon21	c.A2692T	p.K898X	AGGTCTTGGCAAA	.	67.0	26.0	47.0	0.0	.	79	.	.	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	hg19	6	110081565	110081565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FIG4	NM_014845	exon11	c.A1250T	p.D417V	CCTGGGACATGGC	.	81.0	20.0	94.0	0.0	.	77	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111696479	111696479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	REV3L	NM_002912	exon13	c.G3079T	p.V1027F	CGGGAACTTTTGG	.	52.0	12.0	45.0	0.0	.	386	.	.	Atlas-SNP
L3MBTL3	84456	hgsc.bcm.edu	hg19	6	130415451	130415451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	L3MBTL3	NM_032438	exon18	c.T1675C	p.S559P	GGATGCTCAACCC	.	79.0	10.0	70.0	0.0	.	99	.	.	Atlas-SNP
HIVEP2	3097	hgsc.bcm.edu	hg19	6	143090697	143090697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HIVEP2	NM_006734	exon5	c.T5179C	p.F1727L	GAGTAAACTGCTT	.	70.0	52.0	55.0	0.0	.	225	.	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	hg19	6	147067116	147067116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADGB	NM_024694	exon26	c.G3236A	p.R1079Q	CCTCACGATGGAA	.	96.0	16.0	72.0	0.0	.	93	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152652650	152652650	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SYNE1	NM_182961	exon78	c.C13170T	p.I4390I	ACTGCAGATGGCC	.	104.0	71.0	133.0	0.0	.	3227	.	.	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	hg19	6	155776020	155776020	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOX3	NM_015718	exon3	c.C180T	p.C60C	ATTCAGGCACAGT	.	98.0	32.0	74.0	0.0	.	93	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159650876	159650876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FNDC1	NM_032532	exon10	c.A1210C	p.K404Q	GCTCTCAAACCAT	.	82.0	22.0	60.0	0.0	.	250	.	.	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	hg19	6	168352222	168352222	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MLLT4	NM_001040000	exon29	c.A4167T	p.P1389P	TCTCCCACCACCC	.	71.0	7.0	50.0	0.0	.	351	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2565185	2565185	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LFNG	NM_001040167	exon4	c.T719A	p.V240D	AGCGGGTCAGCGA	.	39.0	13.0	46.0	0.0	.	57	.	.	Atlas-SNP
FOXK1	221937	hgsc.bcm.edu	hg19	7	4801902	4801902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FOXK1	NM_001037165	exon9	c.A2009T	p.K670M	GGCCCAAGGAGCC	.	129.0	38.0	124.0	0.0	.	64	.	.	Atlas-SNP
FSCN1	6624	hgsc.bcm.edu	hg19	7	5643005	5643005	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FSCN1	NM_003088	exon2	c.T950A	p.L317Q	GGACGCTGACGGC	.	62.0	10.0	70.0	0.0	.	29	.	.	Atlas-SNP
STK31	56164	hgsc.bcm.edu	hg19	7	23766879	23766879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK31	NM_031414	exon5	c.C269T	p.S90F	TATTTTCTGAAGA	.	78.0	36.0	109.0	0.0	.	175	.	.	Atlas-SNP
HOXA11	3207	hgsc.bcm.edu	hg19	7	27224509	27224509	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HOXA11	NM_005523	exon1	c.G255T	p.A85A	CTCCTCCGCGGAG	.	73.0	37.0	96.0	0.0	.	29	.	.	Atlas-SNP
STK17A	9263	hgsc.bcm.edu	hg19	7	43647961	43647961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	STK17A	NM_004760	exon3	c.T526G	p.F176V	GTTCACTTTTTAC	.	134.0	59.0	164.0	0.0	.	31	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47870917	47870917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PKD1L1	NM_138295	exon42	c.A6371G	p.Q2124R	GACCACTGGGGCA	.	96.0	36.0	121.0	0.0	.	328	.	.	Atlas-SNP
ZNF273	10793	hgsc.bcm.edu	hg19	7	64388967	64388967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF273	NM_021148	exon4	c.A1261G	p.K421E	AAACATAAGAGAA	.	148.0	22.0	143.0	0.0	.	45	.	.	Atlas-SNP
CYP3A5	1577	hgsc.bcm.edu	hg19	7	99272195	99272195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP3A5	NM_001190484	exon3	c.T179G	p.F60C	GTGTCAAATTTCC	.	42.0	22.0	69.0	0.0	.	46	.	.	Atlas-SNP
AZGP1	563	hgsc.bcm.edu	hg19	7	99569527	99569527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AZGP1	NM_001185	exon2	c.G179T	p.R60I	TTGTATCTAAAGA	.	81.0	18.0	79.0	0.0	.	41	.	.	Atlas-SNP
TMEM168	64418	hgsc.bcm.edu	hg19	7	112412840	112412840	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMEM168	NM_022484	exon4	c.A1542T	p.L514L	ACCTGCTAGAGCC	.	139.0	37.0	194.0	0.0	.	84	.	.	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	hg19	7	117175426	117175426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CFTR	NM_000492	exon6	c.T704C	p.L235P	TTGCCCTTTTTCA	.	96.0	4.0	121.0	0.0	.	171	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121653534	121653534	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRZ1	NM_002851	exon12	c.T4434A	p.S1478S	ACTATCTGAGAAT	.	69.0	27.0	92.0	0.0	.	605	.	.	Atlas-SNP
GCC1	79571	hgsc.bcm.edu	hg19	7	127222729	127222729	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GCC1	NM_024523	exon2	c.T1667A	p.L556Q	CGGGCCAGCTCCT	.	34.0	5.0	48.0	0.0	.	83	.	.	Atlas-SNP
CHRM2	1129	hgsc.bcm.edu	hg19	7	136700208	136700208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHRM2	NM_001006632	exon3	c.T596C	p.V199A	TGCCAGTGATCAT	.	58.0	30.0	69.0	0.0	.	167	.	.	Atlas-SNP
AKR1D1	6718	hgsc.bcm.edu	hg19	7	137776523	137776523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AKR1D1	NM_001190907	exon3	c.A271G	p.T91A	TGGGCTACAAATC	.	75.0	14.0	67.0	0.0	.	52	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143021573	143021573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CLCN1	NM_000083	exon7	c.A841G	p.T281A	TTTGGGACACCAC	.	98.0	29.0	98.0	0.0	.	141	.	.	Atlas-SNP
GALNT11	63917	hgsc.bcm.edu	hg19	7	151810421	151810421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GALNT11	NM_022087	exon8	c.G1171C	p.G391R	CCCGAAGGCCAGG	.	104.0	14.0	125.0	0.0	.	59	.	.	Atlas-SNP
ADAMDEC1	27299	hgsc.bcm.edu	hg19	8	24254913	24254913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMDEC1	NM_014479	exon6	c.A571G	p.S191G	GTGAAGAGCACTG	.	88.0	34.0	115.0	0.0	.	69	.	.	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	hg19	8	27293843	27293843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTK2B	NM_173174	exon20	c.A1319G	p.Y440C	AGGTCTATGAAGG	.	90.0	12.0	129.0	0.0	.	304	.	.	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	31498128	31498128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NRG1	NM_013962	exon1	c.G628A	p.E210K	TTCATGGAGCCCG	.	68.0	34.0	78.0	0.0	.	260	.	.	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	hg19	8	39018462	39018462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAM32	NM_145004	exon7	c.A572G	p.H191R	AAATGCATATTGT	.	79.0	31.0	64.0	0.0	.	70	.	.	Atlas-SNP
AGPAT6	137964	hgsc.bcm.edu	hg19	8	41469773	41469773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AGPAT6	NM_178819	exon7	c.G776A	p.S259N	TGGCCAGCGATGG	.	91.0	33.0	107.0	0.0	.	32	.	.	Atlas-SNP
C8orf22	492307	hgsc.bcm.edu	hg19	8	49986888	49986888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C8orf22	NM_001256598	exon4	c.A229G	p.T77A	TCTGCTACTGGGT	.	63.0	17.0	64.0	0.0	.	20	.	.	Atlas-SNP
CSPP1	79848	hgsc.bcm.edu	hg19	8	68107738	68107738	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CSPP1	NM_024790	exon29	c.C3576T	p.F1192F	ACGTTTCATGGCA	.	174.0	89.0	163.0	0.0	.	129	.	.	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71036125	71036125	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NCOA2	NM_006540	exon21	c.C4287T	p.P1429P	CTGCTCGGGACCC	.	126.0	34.0	103.0	0.0	.	147	.	.	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	hg19	8	72229893	72229893	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EYA1	NM_000503	exon7	c.T450A	p.G150G	CAATCCACCTTCA	.	58.0	23.0	55.0	0.0	.	108	.	.	Atlas-SNP
IMPA1	3612	hgsc.bcm.edu	hg19	8	82572837	82572837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IMPA1	NM_001144878	exon9	c.A809G	p.Y270C	TCATAATATGCAT	.	453.0	53.0	290.0	0.0	.	46	.	.	Atlas-SNP
CA1	759	hgsc.bcm.edu	hg19	8	86250479	86250479	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CA1	NM_001738	exon5	c.235+2T>A	.	CAGCTCACCTGAT	.	92.0	13.0	60.0	0.0	.	41	.	.	Atlas-SNP
REXO1L1	254958	hgsc.bcm.edu	hg19	8	86573858	86573858	+	Silent	SNP	G	G	A	rs145542023		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	REXO1L1_ENST00000379010,NS,carcinoma,0,2	REXO1L1	NM_172239	exon1	c.C1869T	p.A623A	GTAGTCGGCCGCG	.	28.0	3.0	1.0	0.0	.	28	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131797638	131797638	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADCY8	NM_001115	exon16	c.T3144A	p.P1048P	TTTTTCAGGTGAC	.	75.0	6.0	49.0	0.0	.	291	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131848557	131848557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	ADCY8,colon,carcinoma,0,1	ADCY8	NM_001115	exon12	c.T2641C	p.F881L	GCAGAAAGAGGCC	.	130.0	46.0	98.0	0.0	.	291	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133935748	133935748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TG	NM_003235	exon22	c.G4694C	p.C1565S	CACAGTGTTTGAG	.	89.0	24.0	67.0	0.0	.	416	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141889628	141889628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTK2	NM_005607	exon4	c.A370G	p.M124V	CGCCCATATCCAC	.	194.0	92.0	128.0	0.0	.	311	.	.	Atlas-SNP
ZFP41	286128	hgsc.bcm.edu	hg19	8	144332183	144332183	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZFP41	NM_173832	exon2	c.A170T	p.E57V	AAGACGAAGAGCA	.	97.0	7.0	79.0	0.0	.	25	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	145001890	145001890	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLEC	NM_201380	exon27	c.C3855T	p.A1285A	CCGCAGGGCGTCG	.	59.0	11.0	48.0	0.0	.	1144	.	.	Atlas-SNP
ARHGAP39	80728	hgsc.bcm.edu	hg19	8	145758592	145758592	+	Missense_Mutation	SNP	C	C	T	rs144988605	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP39	NM_025251	exon10	c.G2806A	p.E936K	GGCGCTCGGGGTA	.	62.0	24.0	41.0	0.0	.	80	.	C|1.000;G|0.000	Atlas-SNP
ARHGAP39	80728	hgsc.bcm.edu	hg19	8	145806392	145806392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP39	NM_025251	exon4	c.G350A	p.R117H	GAGGCGCGCGGGG	.	55.0	23.0	42.0	0.0	.	80	.	.	Atlas-SNP
CHMP5	51510	hgsc.bcm.edu	hg19	9	33271184	33271184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHMP5	NM_016410	exon5	c.A350G	p.K117R	AAATGAAGAAGGC	.	49.0	25.0	57.0	0.0	.	15	.	.	Atlas-SNP
FBXO10	26267	hgsc.bcm.edu	hg19	9	37541574	37541574	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXO10	NM_012166	exon2	c.A192G	p.P64P	CACATCTGGCTGG	.	127.0	36.0	132.0	0.0	.	75	.	.	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	hg19	9	75431065	75431065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TMC1	NM_138691	exon19	c.T1702G	p.Y568D	CCTTCATACACCG	.	95.0	13.0	97.0	0.0	.	87	.	.	Atlas-SNP
OGN	4969	hgsc.bcm.edu	hg19	9	95148565	95148565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OGN	NM_033014	exon6	c.T644A	p.L215H	AAGGTGAGGTTAT	.	64.0	29.0	50.0	0.0	.	26	.	.	Atlas-SNP
NIPSNAP3B	55335	hgsc.bcm.edu	hg19	9	107533137	107533137	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NIPSNAP3B	NM_018376	exon4	c.T438A	p.Y146X	AGTCTATGAACTA	.	88.0	31.0	74.0	0.0	.	22	.	.	Atlas-SNP
PPP6C	5537	hgsc.bcm.edu	hg19	9	127920663	127920663	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PPP6C	NM_002721	exon5	c.238-2A>T	.	TCACCCTGTGAAG	.	102.0	8.0	58.0	0.0	.	108	.	.	Atlas-SNP
LMX1B	4010	hgsc.bcm.edu	hg19	9	129458665	129458665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LMX1B	NM_001174146	exon8	c.C1156A	p.Q386K	TCCCTGCAGGCCC	.	108.0	35.0	114.0	0.0	.	86	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138642869	138642869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KCNT1	NM_020822	exon4	c.C416A	p.P139Q	ATGACCCGGCCCT	.	27.0	10.0	38.0	0.0	.	139	.	.	Atlas-SNP
C9orf172	389813	hgsc.bcm.edu	hg19	9	139740383	139740383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	C9orf172	NM_001080482	exon1	c.T1517C	p.L506P	CCGCACTGTCCCT	.	51.0	26.0	41.0	0.0	.	23	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	329356	329356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DIP2C	NM_014974	exon35	c.G4150T	p.G1384C	AATAACCGCTGGC	.	82.0	4.0	128.0	0.0	.	195	.	.	Atlas-SNP
RAB18	22931	hgsc.bcm.edu	hg19	10	27822715	27822715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RAB18	NM_001256410	exon6	c.A398G	p.N133S	GGTTAAATGAATT	.	67.0	18.0	61.0	0.0	.	18	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49687731	49687731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARHGAP22	NM_001256025	exon4	c.G417A	p.M139I	GTCCTCCATGTCA	.	73.0	21.0	71.0	0.0	.	94	.	.	Atlas-SNP
CHAT	1103	hgsc.bcm.edu	hg19	10	50873041	50873041	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHAT	NM_020549	exon15	c.A2196G	p.P732P	CAAGCCATTGGCA	.	64.0	45.0	79.0	0.0	.	162	.	.	Atlas-SNP
DNA2	1763	hgsc.bcm.edu	hg19	10	70190319	70190319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNA2	NM_001080449	exon14	c.A2082G	p.I694M	AAATCCTATTTTA	.	85.0	23.0	111.0	0.0	.	76	.	.	Atlas-SNP
ASCC1	51008	hgsc.bcm.edu	hg19	10	73892879	73892879	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ASCC1	NM_001198799	exon9	c.A891G	p.K297K	CCACTCTTTCACT	.	85.0	23.0	97.0	0.0	.	18	.	.	Atlas-SNP
GOLGA7B	401647	hgsc.bcm.edu	hg19	10	99623744	99623744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GOLGA7B	NM_001010917	exon3	c.G196A	p.A66T	GCAGAGGCTGAGA	.	63.0	15.0	81.0	0.0	.	11	.	.	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	hg19	10	101556936	101556936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCC2	NM_000392	exon7	c.G715T	p.V239L	ACATTAGTGAGCA	.	63.0	32.0	79.0	0.0	.	160	.	.	Atlas-SNP
SUFU	51684	hgsc.bcm.edu	hg19	10	104389884	104389884	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SUFU	NM_016169	exon12	c.A1427T	p.D476V	TGCCTGACGTGGT	.	51.0	23.0	75.0	0.0	.	44	.	.	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105900629	105900629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	WDR96	NM_025145	exon34	c.A4402T	p.I1468L	CAATTATGTTCTT	.	69.0	7.0	82.0	0.0	.	183	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106924072	106924072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SORCS3	NM_014978	exon12	c.C1744G	p.P582A	ATTGGCCCGGAGC	.	46.0	6.0	44.0	0.0	.	282	.	.	Atlas-SNP
EIF3A	8661	hgsc.bcm.edu	hg19	10	120819149	120819149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EIF3A	NM_003750	exon10	c.G1408A	p.A470T	CTATGGCCCGTTC	.	256.0	63.0	281.0	0.0	.	142	.	.	Atlas-SNP
FGFR2	2263	hgsc.bcm.edu	hg19	10	123276887	123276887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FGFR2	NM_000141	exon8	c.G1030T	p.A344S	TACCCGCCAAGCA	.	86.0	22.0	102.0	0.0	.	758	.	.	Atlas-SNP
FAM196A	642938	hgsc.bcm.edu	hg19	10	128973670	128973670	+	Silent	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM196A	NM_001039762	exon4	c.G990C	p.G330G	CCCCAGCCCCGGC	.	37.0	9.0	30.0	0.0	.	55	.	.	Atlas-SNP
VENTX	27287	hgsc.bcm.edu	hg19	10	135053333	135053333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VENTX	NM_014468	exon2	c.A395T	p.E132V	TCTCAGAGGTCCA	.	44.0	12.0	42.0	0.0	.	24	.	.	Atlas-SNP
LRRC56	115399	hgsc.bcm.edu	hg19	11	552109	552109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRC56	NM_198075	exon12	c.A1058T	p.Q353L	CCGAGCAGCTGCC	.	76.0	37.0	107.0	0.0	.	23	.	.	Atlas-SNP
OR52A1	23538	hgsc.bcm.edu	hg19	11	5172674	5172674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR52A1	NM_012375	exon1	c.T926C	p.M309T	CAGAACATTTTTA	.	58.0	19.0	92.0	0.0	.	58	.	.	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	hg19	11	5624771	5624771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRIM6-TRIM34	NM_001003819	exon2	c.A313G	p.I105V	GCCAACATAGTGA	.	31.0	15.0	68.0	0.0	.	68	.	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	hg19	11	30946867	30946867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DCDC5	NM_020869	exon4	c.A307G	p.R103G	CATCTCTTTGCAG	.	48.0	25.0	74.0	0.0	.	137	.	.	Atlas-SNP
NR1H3	10062	hgsc.bcm.edu	hg19	11	47289839	47289839	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NR1H3	NM_001251934	exon9	c.A1148C	p.Q383P	AGCTCCAGGTAGA	.	62.0	27.0	100.0	0.0	.	52	.	.	Atlas-SNP
OR5B17	219965	hgsc.bcm.edu	hg19	11	58126348	58126348	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR5B17	NM_001005489	exon1	c.T195C	p.S65S	TGCAAGAGACAGG	.	27.0	10.0	85.0	0.0	.	64	.	.	Atlas-SNP
FLRT1	23769	hgsc.bcm.edu	hg19	11	63883947	63883947	+	Silent	SNP	C	C	A	rs139162750	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FLRT1	NM_013280	exon2	c.C208A	p.R70R	AACGACCGGGGAC	.	26.0	18.0	53.0	0.0	.	46	.	C|1.000;T|0.000	Atlas-SNP
CCDC88B	283234	hgsc.bcm.edu	hg19	11	64111953	64111953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC88B	NM_032251	exon14	c.A1940G	p.E647G	GCCCTGAGCACAA	.	58.0	22.0	89.0	0.0	.	89	.	.	Atlas-SNP
INPPL1	3636	hgsc.bcm.edu	hg19	11	71948760	71948760	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	INPPL1	NM_001567	exon26	c.C3472T	p.L1158L	CGGGGACTGCCCT	.	59.0	25.0	105.0	0.0	.	120	.	.	Atlas-SNP
MMP27	64066	hgsc.bcm.edu	hg19	11	102573828	102573828	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MMP27	NM_022122	exon3	c.T363A	p.D121E	TGCCATATCCGGA	.	59.0	34.0	100.0	0.0	.	84	.	.	Atlas-SNP
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110033998	110033998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZC3H12C	NM_033390	exon5	c.G1149T	p.K383N	TGACAGGTTCATG	.	56.0	26.0	93.0	0.0	.	83	.	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	hg19	11	113102431	113102431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NCAM1	NM_001242607	exon12	c.T1232C	p.I411T	AGAGCATCCAGTA	.	68.0	4.0	97.0	0.0	.	372	.	.	Atlas-SNP
MFAP5	8076	hgsc.bcm.edu	hg19	12	8800721	8800721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MFAP5	NM_003480	exon10	c.A488G	p.E163G	ACATTTTCACAGG	.	85.0	70.0	166.0	0.0	.	34	.	.	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22676443	22676443	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_014802	exon7	c.A717T	p.I239I	CGTTCCTATGGCT	.	54.0	19.0	91.0	0.0	.	.	.	.	Atlas-SNP
RPAP3	79657	hgsc.bcm.edu	hg19	12	48064026	48064026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RPAP3	NM_024604	exon13	c.A1390T	p.N464Y	CTAGATTAATAGG	.	55.0	20.0	55.0	0.0	.	45	.	.	Atlas-SNP
DDN	23109	hgsc.bcm.edu	hg19	12	49391094	49391094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DDN	NM_015086	exon2	c.A1565T	p.Q522L	CCGGGCTGGTGTA	.	180.0	89.0	195.0	0.0	.	54	.	.	Atlas-SNP
RACGAP1	29127	hgsc.bcm.edu	hg19	12	50388003	50388003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RACGAP1	NM_013277	exon14	c.C1250T	p.A417V	CAGATAGCATGGA	.	104.0	42.0	96.0	0.0	.	36	.	.	Atlas-SNP
KRT71	112802	hgsc.bcm.edu	hg19	12	52938508	52938508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT71	NM_033448	exon9	c.T1380G	p.S460R	GCCGCCACTGGTG	.	22.0	7.0	36.0	0.0	.	70	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53073703	53073703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT1	NM_006121	exon1	c.G430T	p.G144C	CAGGACCATAACC	.	113.0	26.0	191.0	0.0	.	110	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67691234	67691234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CAND1	NM_018448	exon5	c.T539C	p.L180P	CCTGTCTACTTCC	.	112.0	51.0	114.0	0.0	.	100	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78362415	78362415	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	NAV3,NS,carcinoma,0,2	NAV3	NM_014903	exon5	c.C604A	p.R202R	CAGCAGCGAGTTA	.	213.0	87.0	194.0	0.0	.	506	.	.	Atlas-SNP
NEDD1	121441	hgsc.bcm.edu	hg19	12	97337446	97337446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NEDD1	NM_001135175	exon11	c.C1424A	p.S475Y	TGGGATCTCCAGG	.	55.0	19.0	61.0	0.0	.	47	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120575521	120575521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GCN1L1	NM_006836	exon49	c.A6491G	p.E2164G	CCCACCTCAGGGC	.	69.0	10.0	91.0	0.0	.	207	.	.	Atlas-SNP
LATS2	26524	hgsc.bcm.edu	hg19	13	21549409	21549409	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LATS2	NM_014572	exon8	c.A2867T	p.D956V	CGGTGGTCTGCGG	.	71.0	25.0	88.0	0.0	.	176	.	.	Atlas-SNP
MIPEP	4285	hgsc.bcm.edu	hg19	13	24410481	24410481	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MIPEP	NM_005932	exon14	c.G1551A	p.R517R	AGGGCACCTGGTC	.	50.0	16.0	53.0	0.0	.	53	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25284608	25284608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP12A	NM_001185085	exon20	c.A2792G	p.Q931R	GGTACCAGAGGGA	.	80.0	39.0	164.0	0.0	.	172	.	.	Atlas-SNP
WBP4	11193	hgsc.bcm.edu	hg19	13	41656941	41656941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	WBP4,NS,carcinoma,0,1	WBP4	NM_007187	exon10	c.C1022T	p.T341I	AAAAAACAGTCAC	.	75.0	17.0	100.0	0.0	.	40	.	.	Atlas-SNP
TNFSF11	8600	hgsc.bcm.edu	hg19	13	43174893	43174893	+	Silent	SNP	A	A	G	rs375216189		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TNFSF11	NM_003701	exon3	c.A393G	p.L131L	GGAATTACAACAT	.	38.0	13.0	46.0	0.0	.	43	.	.	Atlas-SNP
GAS6	2621	hgsc.bcm.edu	hg19	13	114535616	114535616	+	Missense_Mutation	SNP	T	T	A	rs200744856	by1000genomes;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GAS6	NM_000820	exon9	c.A944T	p.Q315L	GTGGGCTGCAGCC	.	40.0	4.0	40.0	0.0	.	75	.	T|1.000;C|0.000	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	hg19	13	114766318	114766318	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RASA3	NM_007368	exon19	c.C1833A	p.T611T	GTGGTAGGTAAAT	.	85.0	37.0	124.0	0.0	.	83	.	.	Atlas-SNP
RNASE10	338879	hgsc.bcm.edu	hg19	14	20979115	20979115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RNASE10	NM_001012975	exon1	c.A485T	p.K162M	AGCTCAAGGGGGG	.	66.0	9.0	108.0	0.0	.	28	.	.	Atlas-SNP
GZMB	3002	hgsc.bcm.edu	hg19	14	25101298	25101298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GZMB	NM_004131	exon4	c.A366T	p.R122S	CACAGCTCTGGTC	.	55.0	16.0	55.0	0.0	.	73	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45433642	45433642	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM179B	NM_015091	exon1	c.A2018T	p.Q673L	AAAACCAGACCTC	.	32.0	25.0	46.0	0.0	.	115	.	.	Atlas-SNP
PPP2R5E	5529	hgsc.bcm.edu	hg19	14	63860613	63860613	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PPP2R5E	NM_006246	exon8	c.A774G	p.A258A	GTGTTCTGCCTTA	.	76.0	13.0	82.0	0.0	.	43	.	.	Atlas-SNP
FAM161B	145483	hgsc.bcm.edu	hg19	14	74411141	74411141	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FAM161B	NM_152445	exon3	c.G1011C	p.Q337H	GTCTCTCTGTCGA	.	56.0	13.0	70.0	0.0	.	67	.	.	Atlas-SNP
BDKRB2	624	hgsc.bcm.edu	hg19	14	96707630	96707630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	BDKRB2,NS,carcinoma,0,1	BDKRB2	NM_000623	exon3	c.A965G	p.Y322C	TGGCCTACAGCAA	.	61.0	7.0	111.0	0.0	.	56	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105408806	105408806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AHNAK2	NM_138420	exon7	c.G12982A	p.V4328M	CCTCCACCTTCAG	.	82.0	54.0	93.0	0.0	.	719	.	.	Atlas-SNP
OTUD7A	161725	hgsc.bcm.edu	hg19	15	31776404	31776404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OTUD7A	NM_130901	exon11	c.T1874G	p.L625R	GCGCGCAGGATGT	.	20.0	10.0	22.0	0.0	.	89	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49033896	49033896	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CEP152	NM_001194998	exon26	c.A3995T	p.E1332V	TTTTTCTCAGCCC	.	45.0	10.0	55.0	0.0	.	145	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63970246	63970246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC1	NM_003922	exon37	c.G6868T	p.D2290Y	AGAGGTCAGCGAG	.	70.0	28.0	83.0	0.0	.	624	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63986548	63986548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HERC1	NM_003922	exon29	c.A5443T	p.S1815C	TTGTACTGGCCAC	.	65.0	13.0	119.0	0.0	.	624	.	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	hg19	15	79059245	79059245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMTS7	NM_014272	exon19	c.C3008A	p.P1003H	CCTTCAGGGCCCA	.	55.0	21.0	83.0	0.0	.	142	.	.	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	hg19	15	84568428	84568428	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ADAMTSL3	NM_207517	exon15	c.T1645A	p.W549R	TTGCCTTGGCTGA	.	174.0	66.0	232.0	0.0	.	290	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	hg19	15	100214726	100214726	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEF2A	NM_005587	exon6	c.A525G	p.T175T	GTTAACAGATTCA	.	89.0	39.0	119.0	0.0	.	138	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101562141	101562141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LRRK1	NM_024652	exon14	c.C1831A	p.P611T	AATGTGCCTGCAG	.	35.0	18.0	77.0	0.0	.	310	.	.	Atlas-SNP
OR4F6	390648	hgsc.bcm.edu	hg19	15	102346471	102346471	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR4F6	NM_001005326	exon1	c.A549G	p.R183R	TCCTCGATTTATC	.	74.0	34.0	80.0	0.0	.	45	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3304779	3304779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEFV	NM_000243	exon2	c.C289G	p.Q97E	TTTCTTGTGTGGA	.	36.0	10.0	31.0	0.0	.	170	.	.	Atlas-SNP
SEC14L5	9717	hgsc.bcm.edu	hg19	16	5050737	5050737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SEC14L5	NM_014692	exon9	c.T1052A	p.L351Q	CGCTGCTGCGGCA	.	57.0	23.0	66.0	0.0	.	79	.	.	Atlas-SNP
IGSF6	10261	hgsc.bcm.edu	hg19	16	21654919	21654919	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGSF6	NM_005849	exon4	c.T535A	p.S179T	ATTTTGACTGCCA	.	73.0	14.0	57.0	0.0	.	19	.	.	Atlas-SNP
CES5A	221223	hgsc.bcm.edu	hg19	16	55897346	55897346	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CES5A	NM_001190158	exon7	c.A811T	p.K271X	AGCCTTTGGCCAT	.	122.0	15.0	104.0	0.0	.	206	.	.	Atlas-SNP
AMFR	267	hgsc.bcm.edu	hg19	16	56435757	56435757	+	Splice_Site	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AMFR	NM_001144	exon9	c.975-2A>T	.	CAAACCTGTGGAA	.	40.0	8.0	43.0	0.0	.	40	.	.	Atlas-SNP
CMIP	80790	hgsc.bcm.edu	hg19	16	81691394	81691394	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CMIP	NM_198390	exon5	c.C654A	p.T218T	CTTGACCACCCAG	.	120.0	25.0	136.0	0.0	.	37	.	.	Atlas-SNP
OR3A1	4994	hgsc.bcm.edu	hg19	17	3195335	3195335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR3A1	NM_002550	exon1	c.A542G	p.Y181C	TCACAGTAGAAGT	.	79.0	62.0	169.0	0.0	.	46	.	.	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	hg19	17	9739777	9739777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GLP2R	NM_004246	exon3	c.C367T	p.P123S	TACTTACCTTGGT	.	40.0	26.0	118.0	0.0	.	90	.	.	Atlas-SNP
FBXW10	10517	hgsc.bcm.edu	hg19	17	18653121	18653121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FBXW10	NM_001267585	exon3	c.G757A	p.D253N	GGGTACGATCCCT	.	344.0	15.0	315.0	0.0	.	82	.	.	Atlas-SNP
ULK2	9706	hgsc.bcm.edu	hg19	17	19741841	19741841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ULK2	NM_001142610	exon10	c.A760G	p.R254G	GGTTTCTCTGAAG	.	172.0	84.0	180.0	0.0	.	142	.	.	Atlas-SNP
NOS2	4843	hgsc.bcm.edu	hg19	17	26089920	26089920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NOS2	NM_000625	exon22	c.A2704T	p.I902F	TCAGAATGGGGAG	.	58.0	24.0	60.0	0.0	.	113	.	.	Atlas-SNP
VTN	7448	hgsc.bcm.edu	hg19	17	26695961	26695961	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VTN	NM_000638	exon5	c.A758T	p.N253I	TCCACGTTGTCCG	.	130.0	63.0	131.0	0.0	.	45	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27017150	27017150	+	Silent	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SUPT6H	NM_003170	exon26	c.C3393T	p.S1131S	GCTGAGCTGTCGA	.	205.0	98.0	209.0	0.0	.	165	.	.	Atlas-SNP
TAOK1	57551	hgsc.bcm.edu	hg19	17	27829620	27829620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TAOK1	NM_025142	exon13	c.A1217G	p.Y406C	AAAATTACAGAGA	.	91.0	15.0	88.0	0.0	.	151	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29554603	29554603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	NF1	NM_000267	exon20	c.A2388C	p.K796N	TCCAAAAGCCAAA	.	144.0	18.0	131.0	0.0	.	1586	.	.	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	33921086	33921086	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	AP2B1	NM_001282	exon2	c.G37T	p.G13X	AAAAAAGGTAAGT	.	314.0	59.0	338.0	0.0	.	70	.	.	Atlas-SNP
KRT31	3881	hgsc.bcm.edu	hg19	17	39553767	39553767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT31	NM_002277	exon1	c.A25T	p.S9C	TCAGGCTGGGCAG	.	55.0	16.0	52.0	0.0	.	158	.	.	Atlas-SNP
KRT19	3880	hgsc.bcm.edu	hg19	17	39684180	39684180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KRT19	NM_002276	exon1	c.A320G	p.E107G	TCTAGCTCGCCGT	.	93.0	18.0	85.0	0.0	.	41	.	.	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42949889	42949889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	EFTUD2	NM_004247	exon11	c.G919A	p.V307I	AGCAGACGTTACC	.	116.0	49.0	112.0	0.0	.	85	.	.	Atlas-SNP
CRHR1	1394	hgsc.bcm.edu	hg19	17	43910820	43910820	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CRHR1	NM_001145146	exon11	c.C933A	p.I311I	GCAGATCAATTTC	.	79.0	19.0	92.0	0.0	.	48	.	.	Atlas-SNP
MPO	4353	hgsc.bcm.edu	hg19	17	56349142	56349142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MPO	NM_000250	exon11	c.G1904T	p.G635V	GGCGTGCCATACT	.	74.0	22.0	82.0	0.0	.	114	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	hg19	17	56663388	56663388	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TEX14	NM_001201457	exon18	c.T2862A	p.P954P	ATGCCAAGGAGGT	.	73.0	32.0	70.0	0.0	.	343	.	.	Atlas-SNP
GH2	2689	hgsc.bcm.edu	hg19	17	61958465	61958465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	GH2	NM_022557	exon3	c.A215C	p.Q72P	GGGTTCTGCAGGA	.	67.0	35.0	65.0	0.0	.	73	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71348683	71348683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SDK2	NM_001144952	exon41	c.A5687C	p.Y1896S	AAGTCATAGCTCA	.	57.0	18.0	63.0	0.0	.	219	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76446801	76446801	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DNAH17	NM_173628	exon67	c.A10862T	p.E3621V	GTGGTCTCCAGAT	.	62.0	35.0	60.0	0.0	.	347	.	.	Atlas-SNP
MBD1	4152	hgsc.bcm.edu	hg19	18	47801768	47801768	+	Missense_Mutation	SNP	C	C	T	rs372009396		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MBD1	NM_001204137	exon9	c.G839A	p.R280H	GGAGTGCGTCGCT	.	22.0	14.0	33.0	0.0	.	228	.	.	Atlas-SNP
ATP9B	374868	hgsc.bcm.edu	hg19	18	76966943	76966943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP9B	NM_198531	exon10	c.A961T	p.S321C	GAAGACAGTGACC	.	23.0	17.0	40.0	0.0	.	96	.	.	Atlas-SNP
ATCAY	85300	hgsc.bcm.edu	hg19	19	3918830	3918830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATCAY	NM_033064	exon11	c.T1028C	p.L343P	TTGTGCTGCCCAG	.	63.0	38.0	115.0	0.0	.	84	.	.	Atlas-SNP
SHD	56961	hgsc.bcm.edu	hg19	19	4280338	4280338	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SHD	NM_020209	exon1	c.T278A	p.L93Q	CCCTTCTGGGCGG	.	33.0	15.0	52.0	0.0	.	33	.	.	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	hg19	19	4511838	4511838	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLIN4	NM_001080400	exon3	c.A2092T	p.K698X	TCCCTTTGGCGAC	.	113.0	41.0	198.0	0.0	.	191	.	.	Atlas-SNP
FUT3	2525	hgsc.bcm.edu	hg19	19	5843806	5843806	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FUT3	NM_001097640	exon3	c.A1045T	p.R349W	GGTACCTGGATTC	.	127.0	70.0	220.0	0.0	.	30	.	.	Atlas-SNP
KHSRP	8570	hgsc.bcm.edu	hg19	19	6416517	6416517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KHSRP	NM_003685	exon14	c.T1472C	p.I491T	TCCTCGATAAGCT	.	60.0	24.0	108.0	0.0	.	51	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9065588	9065588	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MUC16	NM_024690	exon3	c.T21858A	p.S7286S	TCTGCTAGAGGAG	.	21.0	11.0	51.0	0.0	.	4315	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10602745	10602745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	KEAP1,middle_lobe,carcinoma,-1,1	KEAP1	NM_012289	exon3	c.C833T	p.P278L	AAGTTCGGCGTCA	.	36.0	17.0	78.0	0.0	.	182	.	.	Atlas-SNP
CCDC151	115948	hgsc.bcm.edu	hg19	19	11545698	11545698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CCDC151	NM_145045	exon1	c.C140A	p.A47E	GTCCACGCCTGGG	.	31.0	22.0	79.0	0.0	.	44	.	.	Atlas-SNP
CYP4F22	126410	hgsc.bcm.edu	hg19	19	15636153	15636153	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYP4F22	NM_173483	exon3	c.G6A	p.L2L	GATGCTGCCCATC	.	28.0	7.0	34.0	0.0	.	74	.	.	Atlas-SNP
OR10H1	26539	hgsc.bcm.edu	hg19	19	15917916	15917916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR10H1	NM_013940	exon1	c.A932C	p.Y311S	TCTGGGTAGAGTT	.	56.0	9.0	105.0	0.0	.	59	.	.	Atlas-SNP
CHERP	10523	hgsc.bcm.edu	hg19	19	16634007	16634007	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CHERP	NM_006387	exon11	c.C1836T	p.F612F	AGGGCCGAAGTCA	.	45.0	27.0	74.0	0.0	.	70	.	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16973709	16973709	+	Silent	SNP	A	A	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIN3B	NM_015260	exon10	c.A1281C	p.T427T	TTGGACACTTCTC	.	41.0	13.0	94.0	0.0	.	90	.	.	Atlas-SNP
IL12RB1	3594	hgsc.bcm.edu	hg19	19	18186614	18186614	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL12RB1	NM_153701	exon7	c.G645T	p.L215L	GCTCCCCAGCTGC	.	39.0	7.0	70.0	0.0	.	92	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22157397	22157397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF208	NM_007153	exon4	c.C439A	p.R147S	TGCCACGTTGAAA	.	50.0	16.0	93.0	0.0	.	817	.	.	Atlas-SNP
HPN	3249	hgsc.bcm.edu	hg19	19	35551262	35551262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HPN	NM_182983	exon8	c.A466T	p.R156W	GGCCGCAGGAAGC	.	21.0	4.0	25.0	0.0	.	45	.	.	Atlas-SNP
POLR2I	5438	hgsc.bcm.edu	hg19	19	36604924	36604924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	POLR2I	NM_006233	exon5	c.G308A	p.R103Q	TCGGCCCGCGCAC	.	49.0	15.0	82.0	0.0	.	10	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40376756	40376756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	FCGBP,NS,carcinoma,0,1	FCGBP	NM_003890	exon24	c.G11666T	p.C3889F	AAGATGCAATCTT	.	301.0	38.0	624.0	0.0	.	416	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42853717	42853717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MEGF8	NM_001271938	exon14	c.G2365T	p.A789S	GGGTCTGCTCGCC	.	14.0	10.0	39.0	0.0	.	358	.	.	Atlas-SNP
PSG2	5670	hgsc.bcm.edu	hg19	19	43576075	43576075	+	Silent	SNP	T	T	C	rs3198704	byfrequency;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PSG2	NM_031246	exon4	c.A741G	p.S247S	GGTGTATGAAGGG	.	108.0	17.0	148.0	0.0	.	84	.	C|0.570;A|0.430	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	hg19	19	45480646	45480646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	CLPTM1_ENST00000347493,NS,lymphoid_neoplasm,0,3	CLPTM1	NM_001294	exon5	c.A515G	p.K172R	TCACCAAGAGTGG	.	58.0	11.0	49.0	0.0	.	109	.	.	Atlas-SNP
TRAPPC6A	79090	hgsc.bcm.edu	hg19	19	45668133	45668133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TRAPPC6A	NM_024108	exon3	c.A290G	p.D97G	AGGCTGTCCATCT	.	88.0	19.0	80.0	0.0	.	16	.	.	Atlas-SNP
MARK4	57787	hgsc.bcm.edu	hg19	19	45783689	45783689	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MARK4	NM_001199867	exon11	c.A1064T	p.Q355L	CCAGCCAGAAGTA	.	277.0	22.0	226.0	0.0	.	132	.	.	Atlas-SNP
ELSPBP1	64100	hgsc.bcm.edu	hg19	19	48523032	48523032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ELSPBP1	NM_022142	exon5	c.A412T	p.N138Y	AGAAATAATGTGG	.	148.0	28.0	129.0	0.0	.	29	.	.	Atlas-SNP
KCNJ14	3770	hgsc.bcm.edu	hg19	19	48967700	48967700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KCNJ14	NM_013348	exon3	c.A977C	p.D326A	AACTGCTCTGGGG	.	101.0	11.0	96.0	0.0	.	28	.	.	Atlas-SNP
SIGLEC9	27180	hgsc.bcm.edu	hg19	19	51630384	51630384	+	Silent	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC9	NM_001198558	exon4	c.T846A	p.P282P	TCCCCCTGCCAGG	.	80.0	19.0	64.0	0.0	.	85	.	.	Atlas-SNP
IGLON5	402665	hgsc.bcm.edu	hg19	19	51830988	51830988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IGLON5	NM_001101372	exon7	c.T770A	p.L257Q	GCAGGCTGAGCAG	.	19.0	5.0	24.0	0.0	.	31	.	.	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	hg19	19	51918290	51918290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC10	NM_033130	exon8	c.C1403A	p.A468D	GGGCTGGCCTGGG	.	54.0	7.0	35.0	0.0	.	112	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53013987	53013987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.,1	.	NM_001099694	exon6	c.A353G	p.Q118R	AGTCACAAAAAGA	.	191.0	58.0	175.0	0.0	.	.	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53645692	53645692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF347	NM_001172675	exon5	c.C392A	p.S131Y	CTGAAGGAACATC	.	85.0	10.0	71.0	0.0	.	87	.	.	Atlas-SNP
VSTM1	284415	hgsc.bcm.edu	hg19	19	54561741	54561741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	VSTM1	NM_198481	exon3	c.T174A	p.F58L	CAGCACAAATGTC	.	133.0	17.0	122.0	0.0	.	30	.	.	Atlas-SNP
PTPRA	5786	hgsc.bcm.edu	hg19	20	2987988	2987988	+	Splice_Site	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PTPRA	NM_002836	exon15	c.830-2A>T	.	TTTCCTAGATGAC	.	41.0	9.0	50.0	0.0	.	75	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	hg19	20	3674260	3674260	+	Silent	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SIGLEC1	NM_023068	exon13	c.G3342T	p.P1114P	CTGGGCCGGGTGA	.	37.0	8.0	57.0	0.0	.	210	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9364907	9364907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PLCB4	NM_182797	exon12	c.T913A	p.F305I	CCAGTCTTCCTAG	.	81.0	23.0	80.0	0.0	.	204	.	.	Atlas-SNP
TNNC2	7125	hgsc.bcm.edu	hg19	20	44453043	44453043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	TNNC2	NM_003279	exon4	c.A202C	p.S68R	TGCCGCTGCCTGC	.	33.0	20.0	40.0	0.0	.	12	.	.	Atlas-SNP
ZNF334	55713	hgsc.bcm.edu	hg19	20	45130957	45130957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ZNF334	NM_018102	exon5	c.A1021T	p.R341W	GTGACCTGAAATG	.	49.0	16.0	70.0	0.0	.	101	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47296240	47296240	+	Silent	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PREX1	NM_020820	exon12	c.C1488T	p.Y496Y	ATCGTCGTAGCGG	.	86.0	32.0	82.0	0.0	.	441	.	.	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	hg19	20	50255968	50255968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ATP9A	NM_006045	exon15	c.A1582G	p.T528A	CAGGGGTCCTCAG	.	144.0	18.0	147.0	0.0	.	135	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60890246	60890246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LAMA5	NM_005560	exon59	c.A7885G	p.I2629V	GTGCGATCTTCTT	.	21.0	8.0	46.0	0.0	.	268	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61512777	61512777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DIDO1	NM_001193369	exon16	c.A4531G	p.M1511V	GGGCCATGGAGAC	.	33.0	5.0	33.0	0.0	.	321	.	.	Atlas-SNP
PRPF6	24148	hgsc.bcm.edu	hg19	20	62612637	62612637	+	Silent	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRPF6	NM_012469	exon1	c.G39T	p.A13A	GCCCGCGCCCCTC	.	112.0	66.0	110.0	0.0	.	88	.	.	Atlas-SNP
LIPI	149998	hgsc.bcm.edu	hg19	21	15537598	15537598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPI	NM_198996	exon6	c.A910T	p.T304S	AGCTAGTCTTGTA	.	59.0	32.0	103.0	0.0	.	95	.	.	Atlas-SNP
LIPI	149998	hgsc.bcm.edu	hg19	21	15537634	15537634	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LIPI	NM_198996	exon6	c.A874C	p.I292L	ATGAAATAAAATT	.	61.0	38.0	103.0	0.0	.	95	.	.	Atlas-SNP
ABCG1	9619	hgsc.bcm.edu	hg19	21	43646020	43646020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ABCG1	NM_207174	exon2	c.G315T	p.K105N	GAGGAAGAAAGGT	.	31.0	24.0	64.0	0.0	.	140	.	.	Atlas-SNP
MLC1	23209	hgsc.bcm.edu	hg19	22	50506909	50506909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MLC1	NM_015166	exon10	c.A847C	p.I283L	TCATGATGCTGAA	.	50.0	34.0	114.0	0.0	.	48	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3240280	3240280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	MXRA5	NM_015419	exon5	c.G3446T	p.R1149M	GGTCTCCTTCGAG	.	79.0	65.0	108.0	0.0	.	815	.	.	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	hg19	X	8503725	8503725	+	Silent	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	KAL1	NM_000216	exon12	c.T1749A	p.T583T	AAACCCAGTCATG	.	92.0	37.0	170.0	0.0	.	78	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32481605	32481605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	DMD	NM_004006	exon25	c.A3383T	p.E1128V	TCTGTCTCAAGTC	.	46.0	20.0	59.0	0.0	.	2127	.	.	Atlas-SNP
CXorf30	645090	hgsc.bcm.edu	hg19	X	36403105	36403105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CXorf30	NM_001098843	exon19	c.T1886C	p.L629S	CTCCTTTGGTGAA	.	166.0	138.0	239.0	0.0	.	76	.	.	Atlas-SNP
RBM3	5935	hgsc.bcm.edu	hg19	X	48433627	48433627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RBM3	NM_006743	exon2	c.A59T	p.Q20L	ACGAGCAGGCACT	.	30.0	13.0	57.0	0.0	.	20	.	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54783989	54783989	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	NM_198510	exon8	c.C2518G	p.L840V	GCCCCAGGTGTGG	.	55.0	47.0	83.0	0.0	.	.	.	.	Atlas-SNP
RLIM	51132	hgsc.bcm.edu	hg19	X	73812676	73812676	+	Silent	SNP	T	T	C	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RLIM	NM_183353	exon5	c.A474G	p.P158P	TGCAGATGGCTCA	.	52.0	43.0	105.0	0.0	.	90	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83128470	83128470	+	Nonsense_Mutation	SNP	G	G	T	rs146830604	bycluster;byfrequency;alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	CYLC1	NM_021118	exon4	c.G754T	p.G252X	TTAGTGGGACAGT	.	110.0	98.0	220.0	0.0	.	272	.	G|0.999;A|0.001	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83352788	83352788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	RPS6KA6	NM_014496	exon19	c.G1845A	p.M615I	AGCCAACATTGTG	.	146.0	123.0	269.0	2.0	.	116	.	.	Atlas-SNP
ARMCX6	54470	hgsc.bcm.edu	hg19	X	100871178	100871178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	ARMCX6	NM_001184768	exon4	c.G433T	p.A145S	AGCCCGCATCCTT	.	99.0	67.0	200.0	0.0	.	21	.	.	Atlas-SNP
IL13RA2	3598	hgsc.bcm.edu	hg19	X	114244204	114244204	+	Silent	SNP	A	A	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	IL13RA2	NM_000640	exon7	c.T732C	p.L244L	AAAAGTAAGATAG	.	74.0	25.0	145.0	0.0	.	66	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	hg19	X	134986663	134986663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SAGE1	NM_018666	exon4	c.A248T	p.E83V	TTTGTGAAGAGAG	.	140.0	53.0	197.0	0.0	.	160	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11346	11346	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	ENST00000361381	exon1	c.G587A	p.W196X	TAATATGACTAGC	.	517.0	226.0	10.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15500	15500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	.	ENST00000361789	exon1	c.G754A	p.D252N	CTAGGCGACCCAG	.	430.0	58.0	16.0	0.0	.	.	.	.	Atlas-SNP
HORMAD1	84072	hgsc.bcm.edu	hg19	1	150676627	150676627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	HORMAD1	NM_032132	exon12	c.916delG	p.E306fs	.	.	190.0	28.0	181.0	0.0	.	59	.	.	Atlas-Indel,Pindel
SH2D3A	10045	hgsc.bcm.edu	hg19	19	6755179	6755180	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	SH2D3A	NM_005490	exon5	c.644_645insC	p.R215fs	.	.	67.0	12.0	102.0	0.0	.	53	.	.	Atlas-INDEL
OR12D3	81797	hgsc.bcm.edu	hg19	6	29342442	29342442	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	OR12D3	NM_030959	exon1	c.624delT	p.A208fs	.	.	67.0	16.0	74.0	0.0	.	55	.	.	Atlas-Indel,Pindel
PRC1	9055	hgsc.bcm.edu	hg19	15	91522459	91522460	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRC1	NM_199413	exon8	c.1036_1037insT	p.E346_V347delinsX	.	.	42.0	10.0	79.0	0.0	.	51	.	.	Atlas-INDEL
PRICKLE4	29964	hgsc.bcm.edu	hg19	6	41754595	41754596	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	PRICKLE4	NM_013397	exon8	c.883_884insGC	p.S295fs	.	.	76.0	39.0	57.0	0.0	.	29	.	.	Atlas-INDEL
LPO	4025	hgsc.bcm.edu	hg19	17	56343575	56343575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	LPO	NM_006151	exon11	c.1580delA	p.N527fs	.	.	82.0	27.0	91.0	0.0	.	73	.	.	Atlas-Indel,Pindel
FIGNL1	63979	hgsc.bcm.edu	hg19	7	50514059	50514060	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.	FIGNL1	NM_022116	exon4	c.927_928insA	p.K309fs	.	.	113.0	28.0	148.0	0.0	.	73	.	.	Atlas-Indel,Pindel
PRICKLE4	29964	hgsc.bcm.edu	hg19	6	41754576	41754595	+	Frame_Shift_Del	DEL	CGCTGCTGCCGGCGGTTCCA	CGCTGCTGCCGGCGGTTCCA	-	rs76510495	alternate_allele	TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	CGCTGCTGCCGGCGGTTCCA	CGCTGCTGCCGGCGGTTCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	.,2	PRICKLE4	NM_013397	exon8	c.863_882del	p.288_294del	.	.	72.0	18.0	63.0	0.0	.	29	.	.	Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7576866	7576897	+	Frame_Shift_Del	DEL	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	-	novel		TCGA-CC-A7IK-01A-12D-A33Q-10	TCGA-CC-A7IK-10A-01D-A33Q-10	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	TATTCTCCATCCAGTGGTTTCTTCTTTGGCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93a9dd15-d593-4dcb-bf89-401618ca141b	437320c7-d091-4bee-9776-417b93833127	TP53_ENST00000269305,NS,carcinoma,0,2	TP53	NM_001126112	exon9	c.950_981del	p.317_327del	.	.	15.0	13.0	81.0	0.0	.	33396	.	.	Pindel
