Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
GCLM	2730	hgsc.bcm.edu	hg19	1	94362176	94362176	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GCLM	NM_002061	exon5	c.C538G	p.Q180E	TCACCTGTGCCCA	.	162.0	76.0	114.0	0.0	.	20	.	.	Atlas-SNP
CGN	57530	hgsc.bcm.edu	hg19	1	151506476	151506476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	CGN	NM_020770	exon15	c.A2768G	p.Q923R	CCCTGCAGGCATC	.	563.0	70.0	391.0	0.0	.	106	.	.	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	hg19	1	151678725	151678725	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	CELF3,caecum,carcinoma,0,1	CELF3	NM_007185	exon10	c.G1101A	p.Q367Q	CTGTTGCTGCTGC	.	85.0	4.0	39.0	0.0	.	49	.	.	Atlas-SNP
OR10J1	26476	hgsc.bcm.edu	hg19	1	159409832	159409832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	OR10J1	NM_012351	exon1	c.G284T	p.S95I	TCTCCAGCCTCGT	.	166.0	7.0	101.0	0.0	.	118	.	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	hg19	1	198698298	198698298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	PTPRC	NM_002838	exon17	c.G1862A	p.R621K	TTGAAAGGGGTAA	.	431.0	247.0	312.0	0.0	.	229	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245771032	245771032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	KIF26B	NM_018012	exon7	c.G1637A	p.G546D	GTTTCGGCCACGC	.	99.0	59.0	79.0	0.0	.	343	.	.	Atlas-SNP
OR6F1	343169	hgsc.bcm.edu	hg19	1	247875822	247875822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	OR6F1	NM_001005286	exon1	c.C236T	p.P79L	GCTTTGGGCACTG	.	87.0	22.0	70.0	0.0	.	88	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248525807	248525807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	OR2T4	NM_001004696	exon1	c.T925C	p.F309L	TCTGTCTTCTATA	.	792.0	234.0	716.0	0.0	.	126	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50280467	50280467	+	Missense_Mutation	SNP	G	G	C	rs200974417	alternate_allele	TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	NRXN1	NM_001135659	exon22	c.C4190G	p.T1397S	GCCAGGGTCGTGG	.	77.0	30.0	84.0	0.0	.	1118	.	.	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	hg19	2	69784077	69784077	+	Missense_Mutation	SNP	C	C	T	rs371902412		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	AAK1	NM_014911	exon3	c.G197A	p.S66N	CCATTGCTTGTCC	.	84.0	33.0	75.0	0.0	.	121	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220352988	220352988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	SPEG	NM_005876	exon32	c.G7814A	p.C2605Y	TGCTCTGCCTGCC	.	67.0	32.0	55.0	0.0	.	272	.	.	Atlas-SNP
C2orf57	165100	hgsc.bcm.edu	hg19	2	232458829	232458829	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	C2orf57	NM_152614	exon1	c.G1167A	p.Q389Q	GGCCCAGGCTGAC	.	74.0	35.0	107.0	0.0	.	35	.	.	Atlas-SNP
SUSD5	26032	hgsc.bcm.edu	hg19	3	33194727	33194727	+	Missense_Mutation	SNP	G	G	A	rs377664152		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	SUSD5	NM_015551	exon5	c.C1397T	p.T466M	TACTTCGTCAAGT	.	48.0	12.0	67.0	0.0	.	53	.	.	Atlas-SNP
HTR1F	3355	hgsc.bcm.edu	hg19	3	88040772	88040772	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	HTR1F	NM_000866	exon2	c.A873G	p.A291A	GAAAGCAGCCACT	.	87.0	29.0	91.0	0.0	.	66	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112991482	112991482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	BOC	NM_033254	exon7	c.G893A	p.R298H	CCTACCGCTGCAT	.	95.0	22.0	120.0	0.0	.	139	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154146570	154146570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GPR149	NM_001038705	exon1	c.G835C	p.A279P	CGGGCGCACCCGG	.	177.0	95.0	181.0	0.0	.	134	.	.	Atlas-SNP
TMA16	55319	hgsc.bcm.edu	hg19	4	164436503	164436503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	.	NM_018352	exon5	c.A278G	p.E93G	AGATTGAGTTACA	.	230.0	90.0	378.0	0.0	.	.	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16689975	16689975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	MYO10	NM_012334	exon28	c.A3854T	p.D1285V	GTCCTATCGGCCA	.	105.0	33.0	77.0	0.0	.	198	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167654929	167654929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	.	NM_001122679	exon25	c.A5287T	p.N1763Y	CTCTGTAATAATG	.	95.0	32.0	169.0	0.0	.	.	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30919613	30919613	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	DPCR1	NM_080870	exon2	c.G3372C	p.E1124D	AGCAGAGTCTACA	.	69.0	33.0	69.0	0.0	.	99	.	.	Atlas-SNP
KLHDC3	116138	hgsc.bcm.edu	hg19	6	42986657	42986657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	KLHDC3	NM_057161	exon8	c.C877T	p.R293C	CGCCGGCGCCAGT	.	106.0	20.0	121.0	0.0	.	23	.	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117746713	117746713	+	Nonsense_Mutation	SNP	G	G	T	rs371523377	alternate_allele	TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	ROS1	NM_002944	exon1	c.C107A	p.S36X	ACACACGACTTTA	.	103.0	53.0	120.0	0.0	.	728	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48443322	48443322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	ABCA13	NM_152701	exon39	c.G11916C	p.Q3972H	CAAACAGACCCGA	.	63.0	26.0	90.0	0.0	.	1192	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	44.0	3.0	45.0	0.0	.	384	.	.	Atlas-SNP
RPL7A	6130	hgsc.bcm.edu	hg19	9	136216547	136216547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	RPL7A	NM_000972	exon3	c.G266T	p.R89L	TGGACCGCCAAAC	.	115.0	5.0	131.0	0.0	.	9	.	.	Atlas-SNP
RNF208	727800	hgsc.bcm.edu	hg19	9	140115059	140115059	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	RNF208	NM_031297	exon1	c.C606T	p.A202A	CAGCGCGGCCAGG	.	356.0	18.0	247.0	0.0	.	11	.	.	Atlas-SNP
NLRP10	338322	hgsc.bcm.edu	hg19	11	7981277	7981277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	NLRP10	NM_176821	exon2	c.A1882G	p.K628E	TATCTTTGCCCTC	.	96.0	5.0	103.0	0.0	.	146	.	.	Atlas-SNP
GALNT18	374378	hgsc.bcm.edu	hg19	11	11643115	11643115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	.	NM_198516	exon1	c.C26T	p.T9I	ACCAAAGTTTTGG	.	106.0	40.0	76.0	0.0	.	.	.	.	Atlas-SNP
WDR74	54663	hgsc.bcm.edu	hg19	11	62607038	62607038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	WDR74	NM_018093	exon2	c.C5T	p.A2V	GCAGCCGCCATGA	.	80.0	33.0	69.0	0.0	.	36	.	.	Atlas-SNP
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67957487	67957487	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	SUV420H1	NM_017635	exon2	c.C57A	p.G19G	CAACTTGCCTCCA	.	66.0	4.0	76.0	0.0	.	125	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20782946	20782946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	PDE3A	NM_000921	exon6	c.G1645C	p.E549Q	TTTCCAGAATCTG	.	54.0	20.0	87.0	0.0	.	184	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112685925	112685925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	.	NM_001109662	exon27	c.G3792C	p.M1264I	CCCCTGCATGGCA	.	151.0	7.0	135.0	0.0	.	.	.	.	Atlas-SNP
STOML3	161003	hgsc.bcm.edu	hg19	13	39564842	39564842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	STOML3	NM_145286	exon1	c.C17T	p.S6F	GGTGAAGACACCC	.	56.0	37.0	87.0	0.0	.	47	.	.	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	hg19	13	96239841	96239841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	DZIP1	NM_198968	exon20	c.A2170G	p.T724A	CCTCGGTCCCGTC	.	142.0	69.0	90.0	0.0	.	195	.	.	Atlas-SNP
ZIC2	7546	hgsc.bcm.edu	hg19	13	100637726	100637726	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	ZIC2	NM_007129	exon3	c.G1389T	p.A463A	GGCGGCGGCTGCG	.	113.0	5.0	92.0	0.0	.	25	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20850191	20850191	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	TEP1	NM_007110	exon30	c.G4305A	p.L1435L	CACACTCAGCACT	.	112.0	60.0	67.0	0.0	.	224	.	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	hg19	14	88970830	88970830	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	PTPN21	NM_007039	exon6	c.C526G	p.Q176E	CATCTTGTAACCA	.	76.0	59.0	113.0	0.0	.	113	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105408769	105408769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	AHNAK2	NM_138420	exon7	c.A13019G	p.D4340G	TTCAGGTCCCCCT	.	93.0	4.0	110.0	0.0	.	719	.	.	Atlas-SNP
RPL4	6124	hgsc.bcm.edu	hg19	15	66795056	66795056	+	Silent	SNP	G	G	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	RPL4	NM_000968	exon4	c.C315G	p.T105T	GGTTTTGGTTGGT	.	123.0	49.0	189.0	0.0	.	29	.	.	Atlas-SNP
SCNN1B	6338	hgsc.bcm.edu	hg19	16	23364163	23364163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	SCNN1B	NM_000336	exon3	c.T353A	p.L118Q	ATGAGCTGATGGA	.	57.0	23.0	95.0	0.0	.	81	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74640738	74640738	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GLG1	NM_001145667	exon1	c.T255G	p.P85P	CGGCTGAGGCTGC	.	52.0	15.0	77.0	0.0	.	106	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74640739	74640739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GLG1	NM_001145667	exon1	c.C254A	p.P85H	GGCTGAGGCTGCT	.	53.0	16.0	77.0	0.0	.	106	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74640753	74640753	+	Silent	SNP	T	T	C	rs374123768	alternate_allele	TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GLG1	NM_001145667	exon1	c.A240G	p.Q80Q	TTGCTGTTGCTGC	.	53.0	22.0	72.0	0.0	.	106	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74640777	74640777	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GLG1	NM_001145667	exon1	c.T216G	p.L72L	CTGCTGAAGCTGC	.	53.0	14.0	75.0	0.0	.	106	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74640778	74640778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	GLG1	NM_001145667	exon1	c.T215A	p.L72H	TGCTGAAGCTGCG	.	54.0	14.0	75.0	0.0	.	106	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9074011	9074011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	MUC16	NM_024690	exon3	c.C13435A	p.P4479T	AAACAGGAGAGGA	.	121.0	63.0	129.0	0.0	.	4315	.	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22363152	22363152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	ZNF676	NM_001001411	exon3	c.A1367C	p.K456T	AAGGCTTTGCCAC	.	63.0	19.0	52.0	0.0	.	146	.	.	Atlas-SNP
C19orf33	64073	hgsc.bcm.edu	hg19	19	38795301	38795301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	C19orf33	NM_033520	exon3	c.C176A	p.S59Y	GCAGCTCCAGCGA	.	231.0	165.0	150.0	0.0	.	9	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	SSC5D	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	114.0	6.0	70.0	0.0	.	65	.	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	hg19	19	56539531	56539531	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	NLRP5	NM_153447	exon7	c.C1932T	p.D644D	CGAAGACGTAAGG	.	75.0	8.0	80.0	0.0	.	217	.	.	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58386258	58386258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	ZNF814,NS,carcinoma,0,1	ZNF814	NM_001144989	exon3	c.G500T	p.G167V	GACTCCCCTGACA	.	310.0	159.0	327.0	0.0	.	93	.	.	Atlas-SNP
OR5AU1	390445	hgsc.bcm.edu	hg19	14	21623894	21623895	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	OR5AU1	NM_001004731	exon1	c.291_292insTC	p.F97fs	.	.	149.0	11.0	136.0	0.0	.	46	.	.	Atlas-INDEL
HPGD	3248	hgsc.bcm.edu	hg19	4	175414376	175414376	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	HPGD	NM_000860	exon6	c.589delG	p.E197fs	.	.	56.0	37.0	66.0	0.0	.	19	.	.	Atlas-INDEL
OR5AU1	390445	hgsc.bcm.edu	hg19	14	21623890	21623890	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A8HS-01A-11D-A35Z-10	TCGA-CC-A8HS-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eec73def-9c6d-487a-b4b5-d9e879138027	4de9ebd4-2594-4178-b695-344708a55698	.	OR5AU1	NM_001004731	exon1	c.296delT	p.L99fs	.	.	149.0	11.0	134.0	0.0	.	46	.	.	Atlas-INDEL
