Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
UBR4	23352	hgsc.bcm.edu	hg19	1	19455517	19455517	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	UBR4	NM_020765	exon61	c.T8958G	p.P2986P	TAATTGAGGCAGG	.	129.0	38.0	170.0	0.0	.	415	.	.	Atlas-SNP
TCEB3	6924	hgsc.bcm.edu	hg19	1	24080866	24080866	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	TCEB3	NM_003198	exon7	c.G1785A	p.V595V	TGAAGTGGGAGGA	.	105.0	34.0	98.0	0.0	.	61	.	.	Atlas-SNP
FUCA1	2517	hgsc.bcm.edu	hg19	1	24181042	24181042	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	FUCA1	NM_000147	exon5	c.G777T	p.V259V	TACTACCACCTCA	.	63.0	33.0	105.0	0.0	.	24	.	.	Atlas-SNP
LEPRE1	64175	hgsc.bcm.edu	hg19	1	43212987	43212987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	LEPRE1	NM_001146289	exon14	c.G2011A	p.A671T	CGATGGCACAGCG	.	72.0	32.0	84.0	0.0	.	130	.	.	Atlas-SNP
CD101	9398	hgsc.bcm.edu	hg19	1	117559864	117559864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	CD101	NM_001256109	exon5	c.G1381C	p.A461P	TTTGTGGCTGGCA	.	119.0	8.0	142.0	0.0	.	95	.	.	Atlas-SNP
PAQR6	79957	hgsc.bcm.edu	hg19	1	156214169	156214169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PAQR6	NM_024897	exon7	c.C539A	p.S180Y	TGCACAGATGTGG	.	47.0	13.0	32.0	0.0	.	23	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160100081	160100081	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ATP1A2	NM_000702	exon12	c.G1651T	p.G551X	GTGCTGGGTGAGA	.	87.0	22.0	79.0	0.0	.	167	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167096907	167096907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	DUSP27	NM_001080426	exon5	c.C2539T	p.L847F	ATGGAGCTTAGGG	.	150.0	14.0	157.0	0.0	.	235	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176759102	176759102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PAPPA2	NM_020318	exon18	c.G4873A	p.E1625K	AACCAGGAACGTG	.	111.0	31.0	115.0	0.0	.	665	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179564900	179564900	+	Nonsense_Mutation	SNP	A	A	T	rs183977806	by1000genomes;alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	TDRD5	NM_173533	exon4	c.A778T	p.K260X	ACTTCCAAGTTAA	.	353.0	107.0	318.0	0.0	.	149	.	A|1.000;G|0.000	Atlas-SNP
FAM129A	116496	hgsc.bcm.edu	hg19	1	184764697	184764697	+	Missense_Mutation	SNP	G	G	T	rs201876014	by1000genomes;alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	FAM129A	NM_052966	exon14	c.C2201A	p.T734K	CCATTCGTATCTT	.	80.0	51.0	60.0	0.0	.	98	.	G|1.000;A|0.000	Atlas-SNP
C1orf106	55765	hgsc.bcm.edu	hg19	1	200877890	200877890	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	C1orf106	NM_018265	exon7	c.T904G	p.S302A	CCAGAGTCTCCAG	.	365.0	45.0	284.0	0.0	.	59	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207649761	207649761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	CR2	NM_001006658	exon15	c.A2899G	p.K967E	CATTGTAAAGGTG	.	119.0	40.0	96.0	0.0	.	164	.	.	Atlas-SNP
ACTN2	88	hgsc.bcm.edu	hg19	1	236925852	236925852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ACTN2	NM_001103	exon21	c.G2618A	p.G873D	GCCCAGGCAGTGT	.	174.0	102.0	131.0	0.0	.	191	.	.	Atlas-SNP
EXO1	9156	hgsc.bcm.edu	hg19	1	242052844	242052844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	EXO1,NS,carcinoma,0,1	EXO1	NM_130398	exon16	c.A2483G	p.E828G	AAGCGGAAGAGGA	.	152.0	47.0	148.0	1.0	.	103	.	.	Atlas-SNP
OR2G6	391211	hgsc.bcm.edu	hg19	1	248685216	248685216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	OR2G6,colon,carcinoma,0,1	OR2G6	NM_001013355	exon1	c.A269T	p.K90I	AAGACAAAACCAT	.	167.0	48.0	153.0	0.0	.	124	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27804119	27804119	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	C2orf16	NM_032266	exon1	c.C4680T	p.N1560N	TCATAACCCCTCT	.	81.0	42.0	115.0	0.0	.	357	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43937431	43937431	+	Missense_Mutation	SNP	G	G	A	rs183194066	alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PLEKHH2	NM_172069	exon13	c.G2176A	p.V726I	TGGTTTGTTCTTA	.	128.0	51.0	179.0	0.0	.	156	.	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	hg19	2	55186295	55186295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	EML6	NM_001039753	exon33	c.C4750A	p.H1584N	AAGGACCACTTCC	.	63.0	32.0	92.0	0.0	.	85	.	.	Atlas-SNP
IWS1	55677	hgsc.bcm.edu	hg19	2	128255759	128255759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	IWS1	NM_017969	exon6	c.G1522C	p.A508P	CTTCTGCTTCTTT	.	126.0	54.0	199.0	0.0	.	61	.	.	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239184411	239184411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PER2	NM_022817	exon4	c.G421T	p.A141S	TGAGGGCGTACTT	.	76.0	38.0	129.0	0.0	.	85	.	.	Atlas-SNP
KY	339855	hgsc.bcm.edu	hg19	3	134346635	134346635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	KY	NM_178554	exon5	c.C363A	p.N121K	TCTTGTGTTTCCA	.	91.0	32.0	125.0	0.0	.	92	.	.	Atlas-SNP
BCHE	590	hgsc.bcm.edu	hg19	3	165503966	165503966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	BCHE	NM_000055	exon3	c.A1651G	p.T551A	ATGATGTCCAGAA	.	87.0	45.0	94.0	0.0	.	136	.	.	Atlas-SNP
LRRC66	339977	hgsc.bcm.edu	hg19	4	52869443	52869443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	LRRC66	NM_001024611	exon2	c.C612A	p.S204R	CTTGTTGCTCTTT	.	80.0	5.0	109.0	0.0	.	128	.	.	Atlas-SNP
EIF4E	1977	hgsc.bcm.edu	hg19	4	99823068	99823068	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	EIF4E	NM_001130678	exon2	c.T144G	p.V48V	GTTAGCAACCTCC	.	47.0	39.0	132.0	0.0	.	18	.	.	Atlas-SNP
PCDHB6	56130	hgsc.bcm.edu	hg19	5	140529886	140529886	+	Silent	SNP	C	C	T	rs143226291		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PCDHB6	NM_018939	exon1	c.C48T	p.F16F	TTTCTTCATTTTA	.	62.0	16.0	101.0	0.0	.	161	.	C|1.000;T|0.000	Atlas-SNP
N4BP3	23138	hgsc.bcm.edu	hg19	5	177548620	177548620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	N4BP3	NM_015111	exon5	c.A1253G	p.E418G	ACGCAGAGCTGGT	.	84.0	39.0	104.0	0.0	.	25	.	.	Atlas-SNP
KCNK17	89822	hgsc.bcm.edu	hg19	6	39271872	39271872	+	Silent	SNP	G	G	T	rs374325536	alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	KCNK17	NM_001135111	exon4	c.C549A	p.G183G	GAGGGCGCCAGAG	.	114.0	60.0	93.0	0.0	.	61	.	.	Atlas-SNP
KIF6	221458	hgsc.bcm.edu	hg19	6	39607459	39607459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	KIF6	NM_145027	exon4	c.G326A	p.G109E	GCACCCCCTGTGA	.	103.0	60.0	117.0	0.0	.	233	.	.	Atlas-SNP
ELFN1	392617	hgsc.bcm.edu	hg19	7	1785060	1785060	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ELFN1	NM_001128636	exon2	c.G828T	p.P276P	CTCCCCGCCGCCC	.	80.0	19.0	72.0	0.0	.	22	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	33945272	33945272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	BMPER	NM_133468	exon2	c.G47T	p.R16L	ACTGCCGCCGCTC	.	73.0	26.0	54.0	0.0	.	131	.	.	Atlas-SNP
SHFM1	7979	hgsc.bcm.edu	hg19	7	96324128	96324128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	SHFM1	NM_006304	exon2	c.A152T	p.D51V	GAGAAGTCATCCT	.	98.0	52.0	115.0	0.0	.	12	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC	.	38.0	3.0	39.0	0.0	.	24	.	.	Atlas-SNP
SND1	27044	hgsc.bcm.edu	hg19	7	127347629	127347629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	SND1	NM_014390	exon9	c.G966T	p.R322S	GCGCAGGCTGAGA	.	110.0	17.0	93.0	0.0	.	104	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131848926	131848926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	PLXNA4_ENST00000359827,NS,carcinoma,0,2	PLXNA4	NM_020911	exon24	c.G4475A	p.R1492H	TGCTGGCGGATGA	.	98.0	23.0	94.0	0.0	.	873	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2813254	2813254	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	CSMD1	NM_033225	exon64	c.C9851G	p.A3284G	ACATCCGCGTGTG	.	50.0	41.0	144.0	0.0	.	1469	.	.	Atlas-SNP
TMEM74	157753	hgsc.bcm.edu	hg19	8	109796520	109796520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	TMEM74	NM_153015	exon2	c.G808A	p.E270K	CAGACTCTTTGGA	.	144.0	14.0	237.0	0.0	.	70	.	.	Atlas-SNP
C9orf172	389813	hgsc.bcm.edu	hg19	9	139739752	139739752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	C9orf172	NM_001080482	exon1	c.G886T	p.A296S	TTTGCAGCCAGTC	.	51.0	47.0	99.0	0.0	.	23	.	.	Atlas-SNP
RBM17	84991	hgsc.bcm.edu	hg19	10	6154319	6154319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	RBM17	NM_001145547	exon8	c.A851G	p.E284G	CCACAGAGAAAGG	.	192.0	76.0	111.0	0.0	.	45	.	.	Atlas-SNP
PTPLA	9200	hgsc.bcm.edu	hg19	10	17636234	17636234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	PTPLA,NS,carcinoma,0,1	PTPLA	NM_014241	exon6	c.C754A	p.L252I	TAAGAAGAAAATA	.	487.0	160.0	357.0	0.0	.	34	.	.	Atlas-SNP
RHOBTB1	9886	hgsc.bcm.edu	hg19	10	62648855	62648855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	RHOBTB1	NM_014836	exon6	c.T571C	p.F191L	GGTCAAACACGCT	.	62.0	22.0	99.0	0.0	.	61	.	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	hg19	10	96066392	96066392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PLCE1	NM_016341	exon26	c.A5831G	p.N1944S	AAAACAATAGTTC	.	79.0	14.0	119.0	0.0	.	543	.	.	Atlas-SNP
SLC5A12	159963	hgsc.bcm.edu	hg19	11	26734192	26734192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	SLC5A12_ENST00000280467,right_upper_lobe,carcinoma,0,2	SLC5A12	NM_178498	exon2	c.A401G	p.Q134R	ACCGTCTGTACAA	.	79.0	37.0	114.0	0.0	.	134	.	.	Atlas-SNP
GYLTL1B	120071	hgsc.bcm.edu	hg19	11	45949843	45949843	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	GYLTL1B	NM_152312	exon13	c.C1870T	p.R624X	GTGCCACGAGACT	.	82.0	46.0	115.0	0.0	.	45	.	.	Atlas-SNP
KRTAP5-10	387273	hgsc.bcm.edu	hg19	11	71277043	71277043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	KRTAP5-10	NM_001012710	exon1	c.G410T	p.C137F	GTTCTTGTGGCTG	.	70.0	39.0	184.0	0.0	.	37	.	.	Atlas-SNP
KLHL35	283212	hgsc.bcm.edu	hg19	11	75139638	75139638	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	KLHL35	NM_001039548	exon2	c.C915A	p.I305I	ACCGCCGATGACC	.	18.0	16.0	48.0	0.0	.	15	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92532846	92532846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	FAT3	NM_001008781	exon9	c.A6667T	p.I2223F	ATCATTATCGATG	.	35.0	26.0	63.0	0.0	.	1822	.	.	Atlas-SNP
GUCY1A2	2977	hgsc.bcm.edu	hg19	11	106810453	106810453	+	Silent	SNP	A	A	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	GUCY1A2	NM_000855	exon4	c.T939A	p.P313P	GTCCGCAGGAACT	.	61.0	49.0	129.0	0.0	.	180	.	.	Atlas-SNP
ELMOD1	55531	hgsc.bcm.edu	hg19	11	107526740	107526740	+	Missense_Mutation	SNP	C	C	G	rs190625125	by1000genomes;alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	ELMOD1,NS,carcinoma,0,1	ELMOD1	NM_018712	exon11	c.C780G	p.F260L	CCATTTCTACAAT	.	28.0	25.0	81.0	0.0	.	40	.	C|1.000;T|0.000	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119025505	119025505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ABCG4	NM_022169	exon6	c.G566T	p.G189V	CACTGGGCCTGAT	.	33.0	29.0	87.0	0.0	.	77	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133794761	133794761	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	IGSF9B	NM_014987	exon15	c.G2073A	p.Q691Q	CAGATCCTGCATG	.	15.0	13.0	46.0	0.0	.	290	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94692459	94692459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PLXNC1	NM_005761	exon27	c.C4126T	p.P1376S	AGTTTACCCAACA	.	169.0	32.0	155.0	0.0	.	135	.	.	Atlas-SNP
N6AMT2	221143	hgsc.bcm.edu	hg19	13	21306081	21306081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	N6AMT2	NM_174928	exon4	c.A407T	p.D136V	ACGATGTCAAAAC	.	1065.0	43.0	109.0	0.0	.	26	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48881475	48881475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	RB1	NM_000321	exon2	c.T197A	p.I66K	TAAAGATACCAGA	.	54.0	41.0	195.0	0.0	.	1068	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48881477	48881477	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	RB1	NM_000321	exon2	c.C199G	p.P67A	AAGATACCAGATC	.	54.0	43.0	195.0	0.0	.	1068	.	.	Atlas-SNP
METTL21C	196541	hgsc.bcm.edu	hg19	13	103338746	103338746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	METTL21C	NM_001010977	exon4	c.G430A	p.D144N	GGACATCAGGCAA	.	187.0	33.0	82.0	0.0	.	23	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24884995	24884995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	NYNRIN	NM_025081	exon9	c.C4040T	p.P1347L	GCTCCCCTTACAC	.	49.0	24.0	82.0	0.0	.	120	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102467511	102467511	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	DYNC1H1	NM_001376	exon20	c.C4215T	p.S1405S	GAAATCCGAAGCA	.	81.0	44.0	196.0	0.0	.	395	.	.	Atlas-SNP
ISL2	64843	hgsc.bcm.edu	hg19	15	76632778	76632778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ISL2	NM_145805	exon4	c.G673T	p.V225L	CAGCTGGTGGAGA	.	151.0	62.0	192.0	0.0	.	20	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3297138	3297138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	MEFV	NM_000243	exon5	c.C1465A	p.Q489K	CCATCTGGCCCAC	.	100.0	4.0	111.0	0.0	.	170	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	47.0	36.0	115.0	1.0	.	33396	.	.	Atlas-SNP
LSMD1	84316	hgsc.bcm.edu	hg19	17	7760598	7760598	+	Missense_Mutation	SNP	G	G	C	rs201706296	alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	LSMD1	NM_032356	exon1	c.C144G	p.C48W	CGCGGGGCACTCA	.	39.0	32.0	106.0	0.0	.	8	.	G|0.999;A|0.001	Atlas-SNP
LIG3	3980	hgsc.bcm.edu	hg19	17	33319683	33319683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	LIG3	NM_013975	exon8	c.C1427T	p.S476L	AGGCCTCGCTGAT	.	61.0	22.0	84.0	0.0	.	164	.	.	Atlas-SNP
KRTAP4-4	84616	hgsc.bcm.edu	hg19	17	39316584	39316584	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	KRTAP4-4	NM_032524	exon1	c.C360T	p.C120C	GCAGCAGCAGGTG	.	93.0	44.0	105.0	0.0	.	21	.	.	Atlas-SNP
TRIM25	7706	hgsc.bcm.edu	hg19	17	54981814	54981814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	TRIM25	NM_005082	exon3	c.A729C	p.Q243H	GTATTCTTGTTGT	.	92.0	32.0	76.0	0.0	.	52	.	.	Atlas-SNP
TTYH2	94015	hgsc.bcm.edu	hg19	17	72218751	72218751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	TTYH2	NM_032646	exon2	c.C257A	p.S86Y	ACCACTCCTGCTG	.	82.0	20.0	39.0	0.0	.	63	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76503830	76503830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	DNAH17	NM_173628	exon28	c.C4294A	p.P1432T	TCCGCGGGTGCGG	.	27.0	18.0	31.0	0.0	.	347	.	.	Atlas-SNP
TPGS2	25941	hgsc.bcm.edu	hg19	18	34385439	34385439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	.	NM_001271954	exon4	c.G280T	p.A94S	TAATTGCCATGCT	.	97.0	43.0	156.0	0.0	.	.	.	.	Atlas-SNP
MADCAM1	8174	hgsc.bcm.edu	hg19	19	497839	497839	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	MADCAM1	NM_130760	exon2	c.C59G	p.S20C	GCCAGTCCCTCCA	.	10.0	6.0	3.0	0.0	.	29	.	.	Atlas-SNP
PRSS57	400668	hgsc.bcm.edu	hg19	19	687062	687062	+	Nonsense_Mutation	SNP	C	C	A	rs376121318		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PRSS57	NM_214710	exon4	c.G508T	p.E170X	GCAGCTCCTCAAA	.	148.0	59.0	256.0	1.0	.	18	.	.	Atlas-SNP
SYDE1	85360	hgsc.bcm.edu	hg19	19	15224669	15224669	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	SYDE1	NM_033025	exon8	c.C2103T	p.D701D	CGAAGACGACTTC	.	81.0	17.0	113.0	0.0	.	44	.	.	Atlas-SNP
RPS16	6217	hgsc.bcm.edu	hg19	19	39926515	39926515	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	RPS16	NM_001020	exon1	c.G21T	p.L7L	AGACTGCAGCGGG	.	40.0	29.0	37.0	0.0	.	12	.	.	Atlas-SNP
GGTLC1	92086	hgsc.bcm.edu	hg19	20	23966368	23966368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	GGTLC1	NM_178311	exon5	c.A467G	p.E156G	GGCTCCTCCACGG	.	63.0	41.0	52.0	0.0	.	37	.	.	Atlas-SNP
POFUT1	23509	hgsc.bcm.edu	hg19	20	30818724	30818724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	POFUT1	NM_015352	exon6	c.A838G	p.M280V	CTCACGATGACTA	.	120.0	5.0	104.0	0.0	.	52	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57429286	57429286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	GNAS_ENST00000371100,NS,carcinoma,0,1	GNAS	NM_001077490	exon1	c.C779T	p.P260L	CACTCCCGTCAAC	.	194.0	103.0	115.0	0.0	.	867	.	.	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	hg19	21	47976001	47976001	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	DIP2A	NM_015151	exon29	c.G3495T	p.V1165V	GGGAGTGAAGGTA	.	71.0	18.0	109.0	0.0	.	332	.	.	Atlas-SNP
POTEH	23784	hgsc.bcm.edu	hg19	22	16287880	16287880	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	POTEH	NM_001136213	exon1	c.G6T	p.V2V	CTCAGCCACCATC	.	507.0	111.0	727.0	1.0	.	114	.	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42273342	42273342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	SREBF2	NM_004599	exon8	c.C1496G	p.S499C	TGACTTCCCTGCT	.	73.0	42.0	101.0	0.0	.	99	.	.	Atlas-SNP
MSL3	10943	hgsc.bcm.edu	hg19	X	11790751	11790751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	MSL3	NM_078629	exon12	c.G1393A	p.E465K	CTTCCAGAAATCC	.	203.0	121.0	246.0	0.0	.	88	.	.	Atlas-SNP
CXorf58	254158	hgsc.bcm.edu	hg19	X	23928463	23928463	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	CXorf58	NM_152761	exon2	c.C44G	p.S15X	TGAAATCAGGTAC	.	374.0	204.0	381.0	0.0	.	53	.	.	Atlas-SNP
MAGED1	9500	hgsc.bcm.edu	hg19	X	51638488	51638488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	MAGED1	NM_001005333	exon4	c.T553C	p.S185P	GATTTTTCCCAGG	.	178.0	42.0	196.0	0.0	.	84	.	.	Atlas-SNP
PHF8	23133	hgsc.bcm.edu	hg19	X	54013589	54013589	+	Silent	SNP	G	G	A	rs148356929	alternate_allele	TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	PHF8	NM_001184896	exon16	c.C2025T	p.P675P	TTTCCGGGGAAAT	.	153.0	86.0	173.0	0.0	.	198	.	G|1.000;C|0.000	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765551	66765551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	AR	NM_000044	exon1	c.C563A	p.A188D	GCGAGGCCAGCAC	.	172.0	58.0	156.0	0.0	.	249	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765552	66765552	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	AR	NM_000044	exon1	c.C564A	p.A188A	CGAGGCCAGCACC	.	170.0	57.0	157.0	0.0	.	249	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70598216	70598216	+	Silent	SNP	T	T	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	TAF1	NM_004606	exon7	c.T1125A	p.G375G	GCTGGGTGTCCCT	.	227.0	56.0	258.0	0.0	.	439	.	.	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	hg19	X	114426238	114426238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	RBMXL3	NM_001145346	exon1	c.G2234T	p.G745V	GAGGAGGTCGCTC	.	75.0	64.0	133.0	0.0	.	83	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148684720	148684736	+	Frame_Shift_Del	DEL	ATGTGTAGGTGAAAGAA	ATGTGTAGGTGAAAGAA	-	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	ATGTGTAGGTGAAAGAA	ATGTGTAGGTGAAAGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ACVR2A	NM_001616	exon11	c.1418_1434del	p.473_478del	.	.	51.0	15.0	138.0	0.0	.	125	.	.	Atlas-Indel,Pindel
ANKRD36B	57730	hgsc.bcm.edu	hg19	2	98160311	98160311	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	.	NM_025190	exon26	c.1726delA	p.K576fs	.	.	44.0	11.0	78.0	0.0	.	.	.	.	Atlas-INDEL
ITGB5	3693	hgsc.bcm.edu	hg19	3	124483275	124483275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ITGB5	NM_002213	exon14	c.2268delG	p.K756fs	.	.	60.0	21.0	79.0	0.0	.	66	.	.	Atlas-Indel,Pindel
DHX57	90957	hgsc.bcm.edu	hg19	2	39046259	39046261	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	DHX57	NM_198963	exon18	c.3318_3320del	p.1106_1107del	.	.	137.0	52.0	191.0	0.0	.	127	.	.	Atlas-Indel,Pindel
LRRC49	54839	hgsc.bcm.edu	hg19	15	71305223	71305225	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	LRRC49	NM_001199017	exon14	c.1688_1690del	p.563_564del	.	.	63.0	29.0	88.0	0.0	.	73	.	.	Atlas-Indel,Pindel
ANKRD18B	441459	hgsc.bcm.edu	hg19	9	33524684	33524685	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A8HU-01A-11D-A35Z-10	TCGA-CC-A8HU-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d	bb86c7c8-28de-4fbb-830b-e0328aa71b1d	.	ANKRD18B	NM_001244752	exon1	c.197_198insA	p.R66fs	.	.	65.0	27.0	153.0	0.0	.	46	.	.	Pindel
