Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ATAD3B	83858	hgsc.bcm.edu	hg19	1	1431055	1431055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ATAD3B	NM_031921	exon16	c.C1805T	p.P602L	CGGACCCCTCCTA	.	48.0	24.0	108.0	0.0	.	68	.	.	Atlas-SNP
TAS1R1	80835	hgsc.bcm.edu	hg19	1	6631179	6631179	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TAS1R1	NM_177540	exon2	c.C402T	p.L134L	CCTTCTCCACTAT	.	89.0	21.0	104.0	0.0	.	76	.	.	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	hg19	1	15653625	15653625	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FHAD1	NM_052929	exon12	c.T1544A	p.V515D	AGCCCGTCACCGA	.	242.0	133.0	374.0	2.0	.	78	.	.	Atlas-SNP
TCEB3	6924	hgsc.bcm.edu	hg19	1	24070016	24070016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TCEB3	NM_003198	exon1	c.A101G	p.Q34R	CGCTCCAAGTTGT	.	27.0	15.0	48.0	0.0	.	61	.	.	Atlas-SNP
TEKT2	27285	hgsc.bcm.edu	hg19	1	36551578	36551578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TEKT2	NM_014466	exon4	c.G424A	p.E142K	GAGGTGGAGGTCA	.	161.0	79.0	231.0	1.0	.	32	.	.	Atlas-SNP
MFSD2A	84879	hgsc.bcm.edu	hg19	1	40422841	40422841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MFSD2A	NM_032793	exon2	c.C176T	p.T59M	AGGTGACGGGCTG	.	58.0	30.0	102.0	0.0	.	53	.	.	Atlas-SNP
EBNA1BP2	10969	hgsc.bcm.edu	hg19	1	43637224	43637224	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	EBNA1BP2	NM_001159936	exon4	c.T414G	p.S138S	CGCCTCAGATCCA	.	121.0	71.0	140.0	0.0	.	37	.	.	Atlas-SNP
FAM73A	374986	hgsc.bcm.edu	hg19	1	78245389	78245389	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FAM73A	NM_001270384	exon1	c.G49C	p.G17R	GGCGTGGGCAGGC	.	59.0	26.0	84.0	0.0	.	56	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86965557	86965557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CLCA1	NM_001285	exon14	c.C2574A	p.N858K	ATCCAACATTGCA	.	123.0	29.0	179.0	0.0	.	109	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86965558	86965558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CLCA1	NM_001285	exon14	c.A2575G	p.I859V	TCCAACATTGCAC	.	122.0	29.0	180.0	0.0	.	109	.	.	Atlas-SNP
GPR61	83873	hgsc.bcm.edu	hg19	1	110085966	110085966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	GPR61,colon,carcinoma,0,1	GPR61	NM_031936	exon2	c.G322A	p.A108T	GACCACGCCCTCT	.	50.0	25.0	56.0	0.0	.	60	.	.	Atlas-SNP
MAGI3	260425	hgsc.bcm.edu	hg19	1	114162434	114162434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MAGI3	NM_152900	exon8	c.A1153C	p.I385L	GTTGAAATTGGGT	.	231.0	75.0	344.0	0.0	.	181	.	.	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114380834	114380834	+	Silent	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PTPN22	NM_015967	exon13	c.A1188G	p.K396K	CTGCCATTTCATG	.	74.0	22.0	93.0	0.0	.	90	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158654957	158654957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SPTA1	NM_003126	exon2	c.A205G	p.I69V	CCATGATCCACTT	.	171.0	32.0	120.0	0.0	.	720	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160137138	160137138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ATP1A4	NM_144699	exon10	c.C1427A	p.A476E	CTGTGGCGGAGAT	.	147.0	21.0	114.0	0.0	.	167	.	.	Atlas-SNP
SELE	6401	hgsc.bcm.edu	hg19	1	169700980	169700980	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SELE	NM_000450	exon4	c.G525A	p.E175E	ACTTTGCTCACAC	.	112.0	17.0	84.0	0.0	.	84	.	.	Atlas-SNP
CFH	3075	hgsc.bcm.edu	hg19	1	196654311	196654311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CFH	NM_001014975	exon7	c.G908T	p.R303L	CAACCCGGGGAAA	.	305.0	219.0	280.0	1.0	.	251	.	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	hg19	1	198713253	198713253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PTPRC	NM_002838	exon26	c.C2768T	p.S923F	ATTTGTCTGAATT	.	176.0	26.0	134.0	0.0	.	229	.	.	Atlas-SNP
TP53BP2	7159	hgsc.bcm.edu	hg19	1	223984262	223984262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TP53BP2	NM_001031685	exon13	c.A1979G	p.Q660R	TGATTCTGGGCAG	.	50.0	8.0	34.0	0.0	.	144	.	.	Atlas-SNP
FBXO28	23219	hgsc.bcm.edu	hg19	1	224345243	224345243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FBXO28	NM_015176	exon5	c.A902G	p.Q301R	AGGACCAGAAACT	.	237.0	28.0	174.0	0.0	.	34	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25467443	25467443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DNMT3A	NM_175629	exon14	c.G1633C	p.E545Q	GCACCTCACGGCC	.	66.0	20.0	57.0	0.0	.	1807	.	.	Atlas-SNP
GAREML	150946	hgsc.bcm.edu	hg19	2	26407445	26407445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001168241	exon4	c.T728A	p.L243Q	GCCCGCTGGAGCT	.	104.0	44.0	108.0	0.0	.	.	.	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	hg19	2	155115572	155115572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	GALNT13	NM_052917	exon8	c.G896T	p.R299I	TTGACAGAAACTA	.	143.0	29.0	146.0	0.0	.	170	.	.	Atlas-SNP
KCNJ3	3760	hgsc.bcm.edu	hg19	2	155711536	155711536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KCNJ3	NM_002239	exon3	c.T1217A	p.I406N	AGAAAATTACTGG	.	247.0	41.0	190.0	0.0	.	126	.	.	Atlas-SNP
KLHL41	10324	hgsc.bcm.edu	hg19	2	170366494	170366494	+	Missense_Mutation	SNP	C	C	T	rs151212497		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	KBTBD10,rectum,carcinoma,0,1	.	NM_006063	exon1	c.C206T	p.A69V	ATGAGGCGAAAAA	.	132.0	33.0	153.0	0.0	.	.	.	C|1.000;T|0.000	Atlas-SNP
KLHL23	151230	hgsc.bcm.edu	hg19	2	170592146	170592146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KLHL23	NM_144711	exon2	c.A622G	p.T208A	AAGTGGACTGCTC	.	182.0	28.0	220.0	0.0	.	52	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179665283	179665283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TTN	NM_001267550	exon4	c.G422A	p.G141E	TCGGCTCCATCCC	.	144.0	16.0	115.0	0.0	.	18412	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185802803	185802803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZNF804A	NM_194250	exon4	c.G2680A	p.E894K	AATGGTGAAACTG	.	106.0	16.0	110.0	0.0	.	322	.	.	Atlas-SNP
XRCC5	7520	hgsc.bcm.edu	hg19	2	217006004	217006004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	XRCC5	NM_021141	exon13	c.A1438G	p.T480A	CCAACCACCAAAA	.	90.0	29.0	126.0	0.0	.	64	.	.	Atlas-SNP
DES	1674	hgsc.bcm.edu	hg19	2	220283471	220283471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	DES,NS,malignant_melanoma,0,1	DES	NM_001927	exon1	c.C287T	p.A96V	CCGACGCGGTGAA	.	262.0	51.0	339.0	0.0	.	53	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220348192	220348192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SPEG	NM_005876	exon30	c.G6007T	p.A2003S	GCTGGGGCTAGCC	.	30.0	20.0	37.0	0.0	.	272	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222294720	222294720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	EPHA4	NM_004438	exon15	c.G2648A	p.R883H	GGGTTGCGGATGA	.	76.0	9.0	73.0	0.0	.	263	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234465583	234465583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	USP40	NM_018218	exon4	c.A500G	p.H167R	AGGTCATGACCGG	.	165.0	53.0	160.0	0.0	.	174	.	.	Atlas-SNP
ZNF197	10168	hgsc.bcm.edu	hg19	3	44674045	44674045	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZNF197	NM_001024855	exon5	c.G723A	p.L241L	GGCCTTGTACTGG	.	84.0	45.0	134.0	0.0	.	81	.	.	Atlas-SNP
HYAL3	8372	hgsc.bcm.edu	hg19	3	50330774	50330774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	HYAL3	NM_001200029	exon4	c.G1157T	p.S386I	CCAAGGCTGCCGT	.	219.0	76.0	268.0	0.0	.	34	.	.	Atlas-SNP
CACNA2D3	55799	hgsc.bcm.edu	hg19	3	55052296	55052296	+	Missense_Mutation	SNP	G	G	A	rs376433361	alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CACNA2D3	NM_018398	exon35	c.G2939A	p.R980H	CTGAGCGCACCAT	.	116.0	41.0	125.0	0.0	.	159	.	.	Atlas-SNP
DNAJB8	165721	hgsc.bcm.edu	hg19	3	128181523	128181523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DNAJB8	NM_153330	exon3	c.T566G	p.I189S	CCATTGATCATCT	.	81.0	38.0	110.0	0.0	.	34	.	.	Atlas-SNP
ACPP	55	hgsc.bcm.edu	hg19	3	132071587	132071587	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ACPP	NM_001099	exon9	c.A888C	p.L296L	TGGCCTACAGATG	.	63.0	19.0	62.0	0.0	.	118	.	.	Atlas-SNP
CEP70	80321	hgsc.bcm.edu	hg19	3	138289288	138289288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CEP70	NM_024491	exon6	c.A337G	p.N113D	AGTCATTAGCTCG	.	147.0	67.0	164.0	0.0	.	51	.	.	Atlas-SNP
VWA5B2	90113	hgsc.bcm.edu	hg19	3	183953088	183953088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	VWA5B2	NM_138345	exon7	c.G1093A	p.A365T	AGCGTGGCACACA	.	135.0	27.0	143.0	0.0	.	47	.	.	Atlas-SNP
CEP19	84984	hgsc.bcm.edu	hg19	3	196435517	196435517	+	Silent	SNP	A	A	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CEP19	NM_032898	exon2	c.T24A	p.T8T	CTTGGCAGTGCAC	.	59.0	13.0	88.0	0.0	.	22	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FAM157A	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA	.	407.0	20.0	483.0	0.0	.	4	.	.	Atlas-SNP
SLBP	7884	hgsc.bcm.edu	hg19	4	1701359	1701359	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SLBP	NM_006527	exon5	c.G411C	p.R137S	CTGTCTCCTCATT	.	32.0	27.0	78.0	0.0	.	12	.	.	Atlas-SNP
TBC1D19	55296	hgsc.bcm.edu	hg19	4	26661311	26661311	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TBC1D19	NM_018317	exon8	c.A573G	p.V191V	GAAAGTAAAAGAC	.	45.0	32.0	72.0	0.0	.	53	.	.	Atlas-SNP
TBC1D19	55296	hgsc.bcm.edu	hg19	4	26661312	26661312	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TBC1D19	NM_018317	exon8	c.A574T	p.K192X	AAAGTAAAAGACA	.	45.0	33.0	71.0	0.0	.	53	.	.	Atlas-SNP
GABRB1	2560	hgsc.bcm.edu	hg19	4	47163294	47163294	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	GABRB1	NM_000812	exon4	c.A269C	p.Q90P	TCCAGCAGTCTTG	.	71.0	39.0	63.0	0.0	.	107	.	.	Atlas-SNP
REST	5978	hgsc.bcm.edu	hg19	4	57796730	57796730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	REST	NM_001193508	exon4	c.A1706G	p.K569R	AGAATAAAAAGCA	.	242.0	167.0	453.0	0.0	.	104	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87556432	87556432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PTPN13	NM_006264	exon2	c.C23A	p.A8D	CTGAGGCCCTGGA	.	60.0	45.0	92.0	0.0	.	203	.	.	Atlas-SNP
CEP44	80817	hgsc.bcm.edu	hg19	4	175225507	175225507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CEP44	NM_001040157	exon6	c.T494G	p.M165R	GGTTTATGACCTC	.	142.0	96.0	206.0	0.0	.	35	.	.	Atlas-SNP
SLC1A3	6507	hgsc.bcm.edu	hg19	5	36629587	36629587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SLC1A3	NM_004172	exon3	c.A217G	p.M73V	TACAGAATGAGCT	.	96.0	18.0	102.0	0.0	.	88	.	.	Atlas-SNP
DDX4	54514	hgsc.bcm.edu	hg19	5	55111225	55111225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DDX4	NM_024415	exon21	c.G2071A	p.V691M	GGAAACGTGTTTG	.	90.0	39.0	105.0	0.0	.	194	.	.	Atlas-SNP
HTR1A	3350	hgsc.bcm.edu	hg19	5	63256758	63256758	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	HTR1A	NM_000524	exon1	c.G789C	p.W263C	CAGCCTCCAGTTC	.	54.0	18.0	58.0	0.0	.	128	.	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	hg19	5	94001708	94001708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ANKRD32	NM_032290	exon12	c.C1511G	p.S504C	CATGGTCTTTAGT	.	28.0	6.0	19.0	0.0	.	117	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109106073	109106073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MAN2A1	NM_002372	exon7	c.G1027T	p.D343Y	GTCACAGATATTT	.	60.0	16.0	106.0	0.0	.	136	.	.	Atlas-SNP
PPIC	5480	hgsc.bcm.edu	hg19	5	122372304	122372304	+	Missense_Mutation	SNP	C	C	G	rs375305758	alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PPIC	NM_000943	exon1	c.G17C	p.R6P	AGCAGCCGAGGAC	.	126.0	28.0	166.0	0.0	.	18	.	.	Atlas-SNP
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137257348	137257348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PKD2L2	NM_014386	exon9	c.T1352C	p.L451P	TTGTTCTTGGAGA	.	57.0	28.0	75.0	0.0	.	68	.	.	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140626364	140626364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PCDHB15	NM_018935	exon1	c.A1218T	p.E406D	AACAGAAGGGGCG	.	99.0	26.0	138.0	0.0	.	138	.	.	Atlas-SNP
PCDHGB5	56101	hgsc.bcm.edu	hg19	5	140778726	140778726	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_018925	exon1	c.A1032G	p.T344T	AGTTACATTCCAT	.	97.0	19.0	156.0	0.0	.	.	.	.	Atlas-SNP
PCDH1	5097	hgsc.bcm.edu	hg19	5	141243510	141243510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PCDH1	NM_032420	exon3	c.G2386A	p.D796N	CGCGGTCACTGAC	.	47.0	9.0	67.0	0.0	.	119	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176721807	176721807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	NSD1	NM_022455	exon23	c.G7438A	p.D2480N	CAGGCTGATGAGA	.	25.0	13.0	40.0	0.0	.	416	.	.	Atlas-SNP
LY6G5B	58496	hgsc.bcm.edu	hg19	6	31640030	31640030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	LY6G5B	NM_021221	exon3	c.G577T	p.A193S	CCCCAGGCTGGAC	.	40.0	8.0	107.0	0.0	.	8	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38690665	38690665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DNAH8	NM_001206927	exon2	c.G80A	p.R27H	CTCCCCGTTCAGA	.	45.0	25.0	62.0	0.0	.	1239	.	.	Atlas-SNP
KHDC1L	100129128	hgsc.bcm.edu	hg19	6	73933531	73933531	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KHDC1L	NM_001126063	exon3	c.G327A	p.Q109Q	CAGGGGCTGGCTT	.	64.0	26.0	70.0	0.0	.	22	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75866062	75866062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	COL12A1	NM_004370	exon15	c.G3161T	p.R1054L	TGAAGTCGCTTTA	.	147.0	59.0	168.0	0.0	.	385	.	.	Atlas-SNP
CASP8AP2	9994	hgsc.bcm.edu	hg19	6	90572457	90572457	+	Silent	SNP	A	A	G	rs9444715	bycluster;byhapmap	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CASP8AP2	NM_001137667	exon7	c.A1029G	p.L343L	AAAACTAGAAAGA	.	69.0	20.0	134.0	0.0	.	108	.	A|1.000;|0.000	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101075740	101075740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ASCC3	NM_006828	exon28	c.C4499A	p.A1500D	CAATCAGCAAGGT	.	73.0	11.0	74.0	0.0	.	205	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101075744	101075744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ASCC3	NM_006828	exon28	c.C4495T	p.L1499F	CAGCAAGGTCTCT	.	77.0	11.0	78.0	0.0	.	205	.	.	Atlas-SNP
POPDC3	64208	hgsc.bcm.edu	hg19	6	105609574	105609574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	POPDC3	NM_022361	exon2	c.G211T	p.D71Y	AGACATCTACCCA	.	173.0	69.0	209.0	0.0	.	47	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136597048	136597048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	BCLAF1_ENST00000531224,NS,carcinoma,0,1	BCLAF1	NM_014739	exon5	c.G1615A	p.A539T	CACTCGCTATCAT	.	60.0	15.0	80.0	0.0	.	203	.	.	Atlas-SNP
ZNF735	730291	hgsc.bcm.edu	hg19	7	63673536	63673536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001159524	exon2	c.G106T	p.A36S	GATCATGCTCAGC	.	354.0	145.0	375.0	0.0	.	.	.	.	Atlas-SNP
OR6B1	135946	hgsc.bcm.edu	hg19	7	143701669	143701669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	OR6B1	NM_001005281	exon1	c.A580G	p.I194V	ATGTCCATAACTG	.	84.0	31.0	96.0	0.0	.	60	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149493599	149493599	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_198455	exon44	c.G6675A	p.E2225E	CTGCGAGCCAGGT	.	61.0	28.0	61.0	0.0	.	.	.	.	Atlas-SNP
SGK223	0	hgsc.bcm.edu	hg19	8	8185368	8185368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001080826	exon4	c.G2924T	p.G975V	TTCTGGCCGCCCA	.	45.0	31.0	102.0	0.0	.	.	.	.	Atlas-SNP
RAB11FIP1	80223	hgsc.bcm.edu	hg19	8	37756665	37756665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	RAB11FIP1	NM_025151	exon1	c.G295T	p.G99C	CGAGGCCGAGCAG	.	16.0	5.0	30.0	0.0	.	105	.	.	Atlas-SNP
TRIM55	84675	hgsc.bcm.edu	hg19	8	67049364	67049364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TRIM55	NM_184086	exon4	c.G542T	p.G181V	TCGTGGGCAGCAA	.	44.0	11.0	79.0	0.0	.	91	.	.	Atlas-SNP
TP53INP1	94241	hgsc.bcm.edu	hg19	8	95952161	95952161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TP53INP1	NM_001135733	exon3	c.G400T	p.V134L	TATGCACAGCATA	.	103.0	9.0	97.0	0.0	.	22	.	.	Atlas-SNP
HAS2	3037	hgsc.bcm.edu	hg19	8	122627072	122627072	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	HAS2	NM_005328	exon4	c.T936C	p.G312G	GTCATCACCAAAG	.	79.0	10.0	80.0	0.0	.	87	.	.	Atlas-SNP
ZHX1	11244	hgsc.bcm.edu	hg19	8	124267098	124267098	+	Silent	SNP	T	T	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZHX1	NM_007222	exon3	c.A1089T	p.V363V	CTGAGGTACAGTA	.	225.0	24.0	142.0	0.0	.	89	.	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17340879	17340879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CNTLN	NM_017738	exon11	c.C1699G	p.Q567E	CGGCTACAGATGT	.	393.0	16.0	368.0	0.0	.	128	.	.	Atlas-SNP
IFNA5	3442	hgsc.bcm.edu	hg19	9	21305082	21305082	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	IFNA5	NM_002169	exon1	c.C174G	p.D58E	TCCAAAGTCATGT	.	92.0	23.0	114.0	0.0	.	21	.	.	Atlas-SNP
HSDL2	84263	hgsc.bcm.edu	hg19	9	115171195	115171195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	HSDL2	NM_032303	exon4	c.A289G	p.I97V	ATTGATATTCTGG	.	58.0	21.0	71.0	0.0	.	24	.	.	Atlas-SNP
PPP2R4	5524	hgsc.bcm.edu	hg19	9	131891300	131891300	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PPP2R4	NM_178001	exon5	c.G358C	p.D120H	ACGCTGGACAGGT	.	93.0	35.0	126.0	0.0	.	32	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	hg19	10	7679256	7679256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ITIH5	NM_001001851	exon5	c.G587C	p.G196A	GCGATGCCCGCGC	.	40.0	9.0	32.0	0.0	.	343	.	.	Atlas-SNP
ADAMTS14	140766	hgsc.bcm.edu	hg19	10	72432599	72432599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ADAMTS14	NM_080722	exon1	c.T41G	p.L14W	TGCCTTTGCACTG	.	67.0	5.0	88.0	0.0	.	148	.	.	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88259625	88259625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	WAPAL	NM_015045	exon3	c.A1375C	p.S459R	TTTCACTGAGATC	.	109.0	18.0	129.0	0.0	.	81	.	.	Atlas-SNP
SIRT3	23410	hgsc.bcm.edu	hg19	11	219012	219012	+	Silent	SNP	G	G	A	rs376721867		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SIRT3	NM_012239	exon6	c.C999T	p.A333A	CCGCACGGCCTCG	.	84.0	32.0	113.0	0.0	.	28	.	.	Atlas-SNP
OR51V1	283111	hgsc.bcm.edu	hg19	11	5221636	5221636	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	OR51V1	NM_001004760	exon1	c.C295T	p.R99X	TCTCTCGAATGAT	.	103.0	37.0	118.0	0.0	.	77	.	.	Atlas-SNP
ZNF215	7762	hgsc.bcm.edu	hg19	11	6977365	6977365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZNF215	NM_013250	exon7	c.A1157G	p.K386R	GTGGGAAAGCCTT	.	71.0	18.0	78.0	0.0	.	72	.	.	Atlas-SNP
PLEKHA7	144100	hgsc.bcm.edu	hg19	11	16863174	16863174	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PLEKHA7	NM_175058	exon9	c.C792T	p.A264A	GGTGTCGGCACTG	.	73.0	30.0	68.0	0.0	.	120	.	.	Atlas-SNP
ACCS	84680	hgsc.bcm.edu	hg19	11	44089305	44089305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ACCS	NM_032592	exon2	c.A128T	p.K43M	ACCAGAAGCTGCC	.	81.0	23.0	112.0	0.0	.	64	.	.	Atlas-SNP
LPXN	9404	hgsc.bcm.edu	hg19	11	58318615	58318615	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	LPXN	NM_001143995	exon5	c.C424T	p.Q142X	ATTCCTGCTCCAG	.	98.0	21.0	84.0	0.0	.	55	.	.	Atlas-SNP
ZP1	22917	hgsc.bcm.edu	hg19	11	60641131	60641131	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZP1	NM_207341	exon9	c.C1455A	p.Y485X	CAGCTACAGAACC	.	91.0	36.0	105.0	0.0	.	69	.	.	Atlas-SNP
C11orf95	65998	hgsc.bcm.edu	hg19	11	63533563	63533563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001144936	exon2	c.A353G	p.N118S	GCAGGGTTGAAGT	.	63.0	31.0	73.0	0.0	.	.	.	.	Atlas-SNP
ANO1	55107	hgsc.bcm.edu	hg19	11	69949238	69949238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ANO1	NM_018043	exon3	c.G508T	p.E170X	GAGGCCGAGTTTC	.	142.0	30.0	173.0	0.0	.	156	.	.	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	hg19	11	129827684	129827684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PRDM10	NM_020228	exon3	c.C191T	p.P64L	TGCTCTGGACCAT	.	38.0	29.0	75.0	0.0	.	120	.	.	Atlas-SNP
OS9	10956	hgsc.bcm.edu	hg19	12	58087962	58087962	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	OS9	NM_001261423	exon1	c.G18T	p.L6L	AACGCTGCTGTCC	.	95.0	35.0	128.0	0.0	.	55	.	.	Atlas-SNP
IRAK3	11213	hgsc.bcm.edu	hg19	12	66638955	66638955	+	Silent	SNP	C	C	G	rs367771929	alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	IRAK3	NM_007199	exon11	c.C1227G	p.P409P	GCCTCCCTGCCCT	.	88.0	18.0	144.0	0.0	.	75	.	.	Atlas-SNP
LUM	4060	hgsc.bcm.edu	hg19	12	91502117	91502117	+	Missense_Mutation	SNP	T	T	A	rs375444776	alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	LUM	NM_002345	exon2	c.A640T	p.N214Y	TATTGTTGTCTAA	.	77.0	40.0	110.0	0.0	.	65	.	.	Atlas-SNP
ATP2A2	488	hgsc.bcm.edu	hg19	12	110765661	110765661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ATP2A2	NM_001681	exon8	c.C934T	p.P312S	GGTCTGCCTGCAG	.	117.0	18.0	91.0	0.0	.	78	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112681775	112681775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001109662	exon30	c.G4150A	p.A1384T	TGACAGCGTGAGA	.	251.0	49.0	208.0	0.0	.	.	.	.	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	hg19	12	115109713	115109713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TBX3	NM_016569	exon8	c.A2165T	p.Q722L	ATGCTCTGCAGTT	.	92.0	16.0	108.0	0.0	.	106	.	.	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	hg19	12	118506330	118506330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	VSIG10	NM_019086	exon8	c.G1419T	p.E473D	ATCTTCCTCCTCC	.	59.0	6.0	32.0	0.0	.	41	.	.	Atlas-SNP
DACH1	1602	hgsc.bcm.edu	hg19	13	72063270	72063270	+	Silent	SNP	C	C	T	rs370706409		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DACH1	NM_080759	exon7	c.G1587A	p.P529P	AGAAAGCGGGGTC	.	31.0	18.0	71.0	0.0	.	123	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77700507	77700507	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MYCBP2	NM_015057	exon53	c.A7830T	p.R2610S	GATACCTCTAAGG	.	51.0	31.0	131.0	0.0	.	1029	.	.	Atlas-SNP
ADPRHL1	113622	hgsc.bcm.edu	hg19	13	114083321	114083321	+	Missense_Mutation	SNP	G	G	A	rs375108772		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	ADPRHL1,NS,carcinoma,0,1	ADPRHL1	NM_138430	exon4	c.C592T	p.R198W	CCGCCCGCAGCAT	.	23.0	14.0	62.0	0.0	.	30	.	.	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86087999	86087999	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FLRT2	NM_013231	exon2	c.C141A	p.V47V	CTTTGTCTACTGT	.	42.0	27.0	78.0	0.0	.	168	.	.	Atlas-SNP
CHGA	1113	hgsc.bcm.edu	hg19	14	93399004	93399004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CHGA	NM_001275	exon7	c.C1098A	p.D366E	GGAGGACAACCGG	.	28.0	18.0	77.0	0.0	.	32	.	.	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	hg19	14	104641670	104641670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KIF26A	NM_015656	exon12	c.G2545A	p.E849K	CGGCTGGAATGCA	.	38.0	29.0	114.0	0.0	.	84	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29406112	29406112	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	APBA2	NM_005503	exon13	c.C2071T	p.R691X	GCTGAGCGAGGGG	.	20.0	8.0	47.0	0.0	.	132	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42058313	42058313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MGA	NM_001164273	exon24	c.G8033T	p.S2678I	CTGATAGCAAGCC	.	166.0	65.0	310.0	0.0	.	264	.	.	Atlas-SNP
PML	5371	hgsc.bcm.edu	hg19	15	74328285	74328285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PML	NM_033239	exon8	c.G2483T	p.G828V	AAGCAGGCCTCTG	.	40.0	11.0	51.0	0.0	.	169	.	.	Atlas-SNP
PSTPIP1	9051	hgsc.bcm.edu	hg19	15	77310799	77310799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PSTPIP1	NM_003978	exon3	c.G139T	p.A47S	TGCAGGGCCCAGG	.	29.0	9.0	80.0	0.0	.	50	.	.	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	hg19	15	85399661	85399661	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ALPK3	NM_020778	exon6	c.G2298A	p.S766S	CATGTCGGCCAGC	.	74.0	19.0	133.0	0.0	.	289	.	.	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91326134	91326134	+	Missense_Mutation	SNP	G	G	C	rs201770808	bycluster	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	BLM	NM_000057	exon13	c.G2638C	p.E880Q	TGCCTAGAATGGA	.	175.0	7.0	288.0	0.0	.	122	.	.	Atlas-SNP
PIGQ	9091	hgsc.bcm.edu	hg19	16	633537	633537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PIGQ	NM_148920	exon10	c.A2186C	p.K729T	GATTGAAGCAGTC	.	35.0	26.0	78.0	0.0	.	43	.	.	Atlas-SNP
TRAF7	84231	hgsc.bcm.edu	hg19	16	2218152	2218152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TRAF7	NM_032271	exon4	c.G214T	p.D72Y	CCGCGGGACGAGG	.	24.0	16.0	64.0	0.0	.	158	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21156684	21156684	+	Missense_Mutation	SNP	G	G	C	rs138032546	alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DNAH3	NM_017539	exon3	c.C266G	p.T89R	CATGACGTGCGTT	.	57.0	39.0	115.0	0.0	.	1142	.	G|1.000;A|0.000	Atlas-SNP
CBFB	865	hgsc.bcm.edu	hg19	16	67100668	67100668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CBFB	NM_022845	exon4	c.G366A	p.M122I	TGGTATGGGCTGT	.	84.0	32.0	138.0	0.0	.	52	.	.	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	hg19	16	67265130	67265130	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FHOD1	NM_013241	exon17	c.C2628T	p.D876D	ATAGAGGTCAGAG	.	62.0	48.0	141.0	0.0	.	86	.	.	Atlas-SNP
DPH1	1801	hgsc.bcm.edu	hg19	17	1945139	1945139	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DPH1	NM_001383	exon12	c.G1320A	p.P440P	GGCGCCGCTGGCT	.	50.0	39.0	60.0	0.0	.	32	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	70.0	50.0	120.0	0.0	.	33396	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26965006	26965006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KIAA0100	NM_014680	exon14	c.A1619C	p.Q540P	AGACATTGGGCAC	.	56.0	12.0	79.0	0.0	.	175	.	.	Atlas-SNP
KCNH4	23415	hgsc.bcm.edu	hg19	17	40330149	40330149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KCNH4	NM_012285	exon4	c.G554T	p.R185L	CCCCGGCGGCCAA	.	74.0	27.0	112.0	0.0	.	105	.	.	Atlas-SNP
NPEPPS	9520	hgsc.bcm.edu	hg19	17	45669377	45669377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	NPEPPS	NM_006310	exon11	c.G1316T	p.S439I	CATATAGCAAAGG	.	548.0	28.0	498.0	0.0	.	59	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79096446	79096446	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	AATK	NM_001080395	exon11	c.G1290A	p.A430A	CCCCGCCGCACCG	.	16.0	9.0	19.0	0.0	.	102	.	.	Atlas-SNP
RAB3D	9545	hgsc.bcm.edu	hg19	19	11446411	11446411	+	Missense_Mutation	SNP	G	G	C	rs200767418	bycluster;alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	RAB3D	NM_004283	exon3	c.C277G	p.R93G	CTCCCCGGTAGTA	.	96.0	12.0	109.0	0.0	.	24	.	.	Atlas-SNP
GTPBP3	84705	hgsc.bcm.edu	hg19	19	17452488	17452488	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	GTPBP3	NM_133644	exon8	c.C1551T	p.F517F	CATCTTCCAGGAC	.	178.0	15.0	202.0	0.0	.	40	.	.	Atlas-SNP
COMP	1311	hgsc.bcm.edu	hg19	19	18896509	18896509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	COMP	NM_000095	exon14	c.G1642A	p.D548N	TGGGGTCAATCTG	.	61.0	23.0	72.0	0.0	.	62	.	.	Atlas-SNP
ZFP82	284406	hgsc.bcm.edu	hg19	19	36884088	36884088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZFP82	NM_133466	exon5	c.A1154G	p.H385R	ATTCTGTGATGGA	.	75.0	23.0	120.0	0.0	.	71	.	.	Atlas-SNP
ZC3H4	23211	hgsc.bcm.edu	hg19	19	47593287	47593287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZC3H4	NM_015168	exon5	c.G652A	p.D218N	AGTCGTCATAGTC	.	81.0	31.0	92.0	0.0	.	96	.	.	Atlas-SNP
ADM5	199800	hgsc.bcm.edu	hg19	19	50193723	50193723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001101340	exon2	c.C435A	p.F145L	CGTCTTCCCCAGT	.	100.0	55.0	141.0	0.0	.	.	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50753873	50753873	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MYH14	NM_001077186	exon15	c.C1758T	p.G586G	GGGCGGCCACCCC	.	191.0	41.0	244.0	0.0	.	261	.	.	Atlas-SNP
ZNF816	125893	hgsc.bcm.edu	hg19	19	53454379	53454379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZNF816	NM_001202457	exon4	c.A649G	p.T217A	TTTGTGTGAATGA	.	66.0	13.0	87.0	0.0	.	73	.	.	Atlas-SNP
PPP1R12C	54776	hgsc.bcm.edu	hg19	19	55610211	55610211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PPP1R12C	NM_017607	exon6	c.G892A	p.D298N	CCAGGTCACAGGG	.	128.0	22.0	178.0	0.0	.	46	.	.	Atlas-SNP
GGT7	2686	hgsc.bcm.edu	hg19	20	33460489	33460489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	GGT7	NM_178026	exon1	c.C130T	p.R44C	CCTTGCGGCCCCT	.	231.0	100.0	245.0	0.0	.	41	.	.	Atlas-SNP
AAR2	25980	hgsc.bcm.edu	hg19	20	34828015	34828015	+	Missense_Mutation	SNP	G	G	T	rs147662826	alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	NM_001271874	exon2	c.G225T	p.M75I	TCGTATGGGTTTC	.	128.0	48.0	152.0	0.0	.	.	.	G|1.000;C|0.000	Atlas-SNP
CDH22	64405	hgsc.bcm.edu	hg19	20	44806803	44806803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	CDH22	NM_021248	exon11	c.G1697T	p.G566V	TTGAAGCCCACGT	.	70.0	28.0	94.0	0.0	.	112	.	.	Atlas-SNP
ZMYND8	23613	hgsc.bcm.edu	hg19	20	45905296	45905296	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ZMYND8	NM_183047	exon11	c.G1242A	p.Q414Q	CTTCTCCTGCTTG	.	170.0	44.0	161.0	0.0	.	166	.	.	Atlas-SNP
KCNJ15	3772	hgsc.bcm.edu	hg19	21	39671702	39671702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KCNJ15	NM_170737	exon3	c.G519A	p.M173I	CAAAAAGCGGGCT	.	33.0	20.0	54.0	0.0	.	43	.	.	Atlas-SNP
DGCR14	8220	hgsc.bcm.edu	hg19	22	19126677	19126677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DGCR14	NM_022719	exon6	c.G817A	p.A273T	CCTGGGCATTGAG	.	29.0	15.0	40.0	0.0	.	43	.	.	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	hg19	X	26212737	26212737	+	Missense_Mutation	SNP	C	C	G	rs143373947	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MAGEB6	NM_173523	exon2	c.C774G	p.S258R	TTCCAGCGGCGAG	.	58.0	29.0	152.0	0.0	.	91	.	C|0.997;T|0.003	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54275438	54275438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	WNK3	NM_001002838	exon17	c.G3343T	p.E1115X	ATTTTTCATCCAG	.	109.0	25.0	161.0	0.0	.	218	.	.	Atlas-SNP
FGD1	2245	hgsc.bcm.edu	hg19	X	54475585	54475585	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	FGD1	NM_004463	exon15	c.C2265T	p.A755A	CCCGCAGGCCTTG	.	80.0	25.0	103.0	0.0	.	99	.	.	Atlas-SNP
DGAT2L6	347516	hgsc.bcm.edu	hg19	X	69419697	69419697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	DGAT2L6	NM_198512	exon3	c.C232A	p.L78I	TGGACCCTATGGA	.	88.0	18.0	139.0	0.0	.	40	.	.	Atlas-SNP
P2RY10	27334	hgsc.bcm.edu	hg19	X	78216995	78216995	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	P2RY10	NM_198333	exon2	c.C978A	p.S326S	CCGCTCCCGCCTC	.	195.0	89.0	250.0	0.0	.	99	.	.	Atlas-SNP
P2RY10	27334	hgsc.bcm.edu	hg19	X	78216996	78216996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	P2RY10	NM_198333	exon2	c.C979A	p.R327S	CGCTCCCGCCTCA	.	196.0	89.0	251.0	0.0	.	99	.	.	Atlas-SNP
RNF128	79589	hgsc.bcm.edu	hg19	X	105970236	105970236	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	RNF128	NM_194463	exon1	c.G93A	p.P31P	GAGTCCGCAGGCA	.	216.0	58.0	277.0	0.0	.	74	.	.	Atlas-SNP
MAGEA11	4110	hgsc.bcm.edu	hg19	X	148798034	148798034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	MAGEA11	NM_005366	exon5	c.C888G	p.N296K	CCTCAACCTCTCT	.	211.0	40.0	332.0	0.0	.	86	.	.	Atlas-SNP
TREX2	11219	hgsc.bcm.edu	hg19	X	152710779	152710779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	TREX2	NM_080701	exon2	c.G110C	p.R37P	GAGGAGCGGTGGA	.	200.0	93.0	323.0	1.0	.	36	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	14846	14846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	.	ENST00000361789	exon1	c.G100A	p.G34S	AACTTCGGCTCAC	.	118.0	102.0	72.0	0.0	.	.	.	.	Atlas-SNP
GJD2	57369	hgsc.bcm.edu	hg19	15	35045139	35045139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	GJD2	NM_020660	exon2	c.507delA	p.L169fs	.	.	84.0	27.0	142.0	0.0	.	49	.	.	Atlas-Indel,Pindel
IKZF3	22806	hgsc.bcm.edu	hg19	17	37947672	37947681	+	Frame_Shift_Del	DEL	AATGTGTCCT	AATGTGTCCT	-	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	AATGTGTCCT	AATGTGTCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	IKZF3	NM_183229	exon5	c.581_590del	p.194_197del	.	.	89.0	11.0	78.0	0.0	.	79	.	.	Atlas-Indel,Pindel
ASCC3	10973	hgsc.bcm.edu	hg19	6	101075734	101075735	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	ASCC3	NM_006828	exon28	c.4505_4506insCT	p.W1502fs	.	.	73.0	11.0	74.0	0.0	.	205	.	.	Atlas-INDEL
PRSS42	339906	hgsc.bcm.edu	hg19	3	46871985	46871986	+	Splice_Site	INS	-	-	A	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	PRSS42	NM_182702	exon6	c.793-2->T	.	.	.	70.0	17.0	90.0	0.0	.	17	.	.	Atlas-INDEL
SETD2	29072	hgsc.bcm.edu	hg19	3	47163348	47163348	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SETD2	NM_014159	exon3	c.2779delG	p.E927fs	.	.	102.0	45.0	114.0	0.0	.	721	.	.	Atlas-Indel,Pindel
SCN1A	6323	hgsc.bcm.edu	hg19	2	166847916	166847917	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	SCN1A	NM_001202435	exon28	c.5869_5870insA	p.E1957fs	.	.	134.0	17.0	107.0	0.0	.	641	.	.	Atlas-Indel,Pindel
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5922128	5922129	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-CC-A8HV-01A-11D-A35Z-10	TCGA-CC-A8HV-10A-01D-A35Z-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a0093c24-2b98-43fb-87bc-090fedcba21d	34604e11-7a84-4463-a0db-b90bf2ee82a5	.	KIAA2026	NM_001017969	exon8	c.3868_3869del	p.1290_1290del	.	.	173.0	54.0	150.0	0.0	.	231	.	.	Atlas-Indel,Pindel
