Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARID1A	8289	hgsc.bcm.edu	hg19	1	27097796	27097796	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ARID1A	NM_006015	exon12	c.A3385T	p.K1129X	CAGCCCAAGATCC	.	78.0	27.0	121.0	0.0	.	842	.	.	Atlas-SNP
C1orf177	163747	hgsc.bcm.edu	hg19	1	55279596	55279596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	C1orf177	NM_001110533	exon7	c.C872T	p.T291I	CGAAAACCCCTAC	.	186.0	79.0	222.0	0.0	.	36	.	.	Atlas-SNP
CLCA4	22802	hgsc.bcm.edu	hg19	1	87045742	87045742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CLCA4	NM_012128	exon14	c.G2474A	p.S825N	AGGAAAGCTTTGC	.	166.0	64.0	205.0	0.0	.	131	.	.	Atlas-SNP
DCAF6	55827	hgsc.bcm.edu	hg19	1	167971753	167971753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	DCAF6	NM_001198956	exon8	c.C937T	p.R313C	AGACTTCGTGGTG	.	145.0	97.0	131.0	0.0	.	99	.	.	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	hg19	1	180885825	180885825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	KIAA1614	NM_020950	exon2	c.G586T	p.D196Y	CTTCCTGACCATG	.	103.0	11.0	100.0	0.0	.	75	.	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201012432	201012432	+	Silent	SNP	A	A	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CACNA1S	NM_000069	exon40	c.T5025C	p.H1675H	GTTGCTATGGTTG	.	86.0	62.0	115.0	0.0	.	249	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1481013	1481013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	TPO,colon,carcinoma,0,1	TPO	NM_175719	exon8	c.C975A	p.D325E	CCTGGACGCGTCC	.	1074.0	395.0	1079.0	1.0	.	224	.	.	Atlas-SNP
KLF11	8462	hgsc.bcm.edu	hg19	2	10192629	10192629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	KLF11	NM_003597	exon4	c.G1534A	p.A512T	GCCTCTGCCTGAA	.	79.0	42.0	99.0	0.0	.	45	.	.	Atlas-SNP
LOXL3	84695	hgsc.bcm.edu	hg19	2	74763931	74763931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	LOXL3	NM_032603	exon5	c.G817T	p.G273W	CCCCCCCAGGGCA	.	122.0	49.0	115.0	0.0	.	73	.	.	Atlas-SNP
NMS	129521	hgsc.bcm.edu	hg19	2	101096961	101096961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	NMS	NM_001011717	exon7	c.T340C	p.S114P	CAGGGCTCGGGGA	.	111.0	33.0	112.0	0.0	.	26	.	.	Atlas-SNP
SCN9A	6335	hgsc.bcm.edu	hg19	2	167162425	167162425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	SCN9A	NM_002977	exon5	c.C473A	p.T158N	GTAAAAGTGTACC	.	269.0	79.0	241.0	0.0	.	296	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	167760305	167760305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	XIRP2_ENST00000409728,NS,carcinoma,-1,2	XIRP2	NM_001199143	exon2	c.C313A	p.R105S	AGTCGGCGCAGGA	.	207.0	82.0	233.0	0.0	.	914	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179600418	179600418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TTN	NM_001267550	exon50	c.G14755A	p.V4919I	ACGTAACTGTGAC	.	86.0	37.0	101.0	0.0	.	18412	.	.	Atlas-SNP
GPR1	2825	hgsc.bcm.edu	hg19	2	207041060	207041060	+	Silent	SNP	A	A	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	GPR1	NM_001098199	exon3	c.T912C	p.Y304Y	TAGGACATAAAGG	.	132.0	49.0	134.0	0.0	.	38	.	.	Atlas-SNP
IL17RE	132014	hgsc.bcm.edu	hg19	3	9957185	9957185	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	IL17RE	NM_153483	exon17	c.G1818A	p.P606P	TCGCCCGGTCAGC	.	5.0	4.0	0.0	0.0	.	62	.	.	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	hg19	3	10291105	10291105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TATDN2	NM_014760	exon2	c.C221T	p.S74F	GCTCATCCCGCCG	.	227.0	91.0	233.0	0.0	.	59	.	.	Atlas-SNP
CLEC3B	7123	hgsc.bcm.edu	hg19	3	45077310	45077310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CLEC3B	NM_003278	exon3	c.G503T	p.G168V	ATGGCGGCAAGAC	.	149.0	49.0	183.0	0.0	.	15	.	.	Atlas-SNP
RBM15B	29890	hgsc.bcm.edu	hg19	3	51430282	51430282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	RBM15B	NM_013286	exon1	c.G1452T	p.R484S	CCGCAGGCTCCGC	.	45.0	11.0	56.0	0.0	.	47	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89156962	89156962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	EPHA3	NM_005233	exon1	c.C64A	p.L22M	GGGGAACTGATTC	.	66.0	26.0	82.0	0.0	.	501	.	.	Atlas-SNP
ILDR1	286676	hgsc.bcm.edu	hg19	3	121724154	121724154	+	Missense_Mutation	SNP	G	G	A	rs200029008		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ILDR1	NM_175924	exon3	c.C316T	p.R106W	GCCCCCGCCGCTG	.	105.0	37.0	115.0	0.0	.	120	.	G|0.999;A|0.001	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142279231	142279231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ATR	NM_001184	exon6	c.C1415G	p.S472C	TGAAGGGATTCAG	.	136.0	54.0	204.0	0.0	.	285	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153943788	153943788	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ARHGEF26	NM_001251962	exon11	c.C2079T	p.T693T	TATCACCAAGAAG	.	101.0	30.0	132.0	0.0	.	158	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193384162	193384162	+	Silent	SNP	A	A	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	OPA1	NM_130837	exon28	c.A2856G	p.Q952Q	GCAACAACTTACA	.	114.0	45.0	143.0	0.0	.	79	.	.	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	hg19	4	265712	265712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ZNF732	NM_001137608	exon3	c.G931C	p.G311R	CTTTGCCACATTC	.	74.0	26.0	98.0	0.0	.	117	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13605490	13605490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	.	NM_148894	exon10	c.C3034T	p.L1012F	TCTCAAGCCTGGT	.	89.0	8.0	92.0	0.0	.	.	.	.	Atlas-SNP
OCIAD2	132299	hgsc.bcm.edu	hg19	4	48894859	48894859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	OCIAD2	NM_001014446	exon6	c.G313A	p.V105I	GGCATACTCCTAT	.	408.0	167.0	452.0	0.0	.	16	.	.	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119952156	119952156	+	Silent	SNP	T	T	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	SYNPO2	NM_001128934	exon4	c.T2226A	p.A742A	AGAGGCTTGTAAT	.	93.0	47.0	143.0	0.0	.	353	.	.	Atlas-SNP
GYPE	2996	hgsc.bcm.edu	hg19	4	144801586	144801586	+	Silent	SNP	A	A	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	GYPE	NM_198682	exon2	c.T114C	p.S38S	GATGTAACTCTTT	.	330.0	32.0	525.0	0.0	.	21	.	.	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	hg19	5	140720901	140720901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PCDHGA2	NM_018915	exon1	c.A2363G	p.K788R	AGAAAAAGGATTT	.	281.0	26.0	336.0	0.0	.	205	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150886785	150886785	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FAT2	NM_001447	exon22	c.G12447A	p.P4149P	AGCTGGCGGGAGT	.	71.0	28.0	89.0	0.0	.	465	.	.	Atlas-SNP
FAM50B	26240	hgsc.bcm.edu	hg19	6	3850894	3850894	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FAM50B	NM_012135	exon2	c.G849A	p.E283E	CATGGAGAAGGAC	.	90.0	20.0	128.0	0.0	.	44	.	.	Atlas-SNP
HIST1H3H	8357	hgsc.bcm.edu	hg19	6	27777979	27777979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	HIST1H3H	NM_003536	exon1	c.G128A	p.R43Q	GCTATCGGCCTGG	.	121.0	48.0	138.0	0.0	.	25	.	.	Atlas-SNP
CFB	629	hgsc.bcm.edu	hg19	6	31915209	31915209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CFB	NM_001710	exon4	c.A569C	p.H190P	CCTACCACTGCAG	.	77.0	32.0	88.0	0.0	.	33	.	.	Atlas-SNP
KLHDC3	116138	hgsc.bcm.edu	hg19	6	42988468	42988468	+	Silent	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	KLHDC3	NM_057161	exon11	c.G1146T	p.G382G	CCATGGGTAGGAG	.	74.0	25.0	88.0	0.0	.	23	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20198211	20198211	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	MACC1	NM_182762	exon5	c.G1773A	p.Q591Q	TTTGGACTGACCA	.	91.0	13.0	105.0	0.0	.	99	.	.	Atlas-SNP
HOXA13	3209	hgsc.bcm.edu	hg19	7	27239233	27239233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	HOXA13	NM_000522	exon1	c.C464G	p.P155R	GAGCAGGGGCTGC	.	247.0	101.0	250.0	0.0	.	25	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48313700	48313700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ABCA13	NM_152701	exon17	c.A4437T	p.E1479D	CTTTGAAAAAGAG	.	239.0	98.0	273.0	0.0	.	1192	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100677098	100677098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	MUC17	NM_001040105	exon3	c.C2401A	p.P801T	TCAACTCCTAGTG	.	82.0	7.0	84.0	0.0	.	804	.	.	Atlas-SNP
CADPS2	93664	hgsc.bcm.edu	hg19	7	122033326	122033326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CADPS2	NM_001167940	exon22	c.C2944A	p.P982T	GACTTGGAACTTT	.	209.0	11.0	222.0	0.0	.	116	.	.	Atlas-SNP
TAS2R38	5726	hgsc.bcm.edu	hg19	7	141673088	141673088	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TAS2R38	NM_176817	exon1	c.C402T	p.S134S	GACCCAGCTTGCC	.	120.0	37.0	137.0	0.0	.	51	.	.	Atlas-SNP
PRSS55	203074	hgsc.bcm.edu	hg19	8	10396245	10396245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PRSS55	NM_198464	exon5	c.G1001A	p.R334K	GCCCCAGATCCTG	.	94.0	15.0	123.0	0.0	.	67	.	.	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	hg19	8	56436289	56436289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	XKR4,NS,carcinoma,0,1	XKR4	NM_052898	exon3	c.G1456T	p.A486S	GCAGACGCATTTG	.	195.0	19.0	83.0	1.0	.	104	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27228299	27228299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TEK	NM_000459	exon22	c.G3296A	p.R1099Q	AGGAGCGAAAGGT	.	52.0	21.0	53.0	0.0	.	250	.	.	Atlas-SNP
FANCC	2176	hgsc.bcm.edu	hg19	9	97869519	97869519	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FANCC	NM_001243743	exon14	c.G1362A	p.L454L	CATTGCCAGGAGG	.	62.0	26.0	74.0	0.0	.	53	.	.	Atlas-SNP
GSN	2934	hgsc.bcm.edu	hg19	9	124062174	124062174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	GSN	NM_000177	exon1	c.G35T	p.C12F	TGCTTTGCGCGCT	.	61.0	29.0	47.0	0.0	.	81	.	.	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	hg19	9	125659787	125659787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	RC3H2	NM_018835	exon2	c.T2G	p.M1R	ACAGGCATTGTGG	.	82.0	24.0	79.0	0.0	.	150	.	.	Atlas-SNP
FUT7	2529	hgsc.bcm.edu	hg19	9	139925311	139925311	+	Silent	SNP	G	G	T	rs201121157	alternate_allele	TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FUT7	NM_004479	exon2	c.C880A	p.R294R	GGTATCGGCTCTC	.	79.0	33.0	80.0	0.0	.	24	.	G|0.999;A|0.001	Atlas-SNP
ST8SIA6	338596	hgsc.bcm.edu	hg19	10	17401546	17401546	+	Nonsense_Mutation	SNP	C	C	T	rs193920832	alternate_allele	TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	ST8SIA6,NS,adenoma,0,1	ST8SIA6	NM_001004470	exon4	c.G344A	p.W115X	CGTTTCCATGGAC	.	381.0	140.0	367.0	0.0	.	85	.	.	Atlas-SNP
PRKG1	5592	hgsc.bcm.edu	hg19	10	53227585	53227585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PRKG1	NM_006258	exon3	c.C581T	p.A194V	GGACAGCGACCGT	.	123.0	49.0	161.0	0.0	.	167	.	.	Atlas-SNP
CCDC172	374355	hgsc.bcm.edu	hg19	10	118100283	118100283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	.	NM_198515	exon4	c.T203G	p.L68R	TACAGCTTTTGAA	.	229.0	89.0	234.0	0.0	.	.	.	.	Atlas-SNP
OR52B4	143496	hgsc.bcm.edu	hg19	11	4389145	4389145	+	Silent	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	OR52B4	NM_001005161	exon1	c.C381A	p.A127A	GCATATGGCAATA	.	155.0	57.0	176.0	0.0	.	56	.	.	Atlas-SNP
OR56A3	390083	hgsc.bcm.edu	hg19	11	5968754	5968754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	OR56A3	NM_001003443	exon1	c.C178T	p.H60Y	TCTCTGCACCAGC	.	136.0	42.0	110.0	0.0	.	81	.	.	Atlas-SNP
OR8H1	219469	hgsc.bcm.edu	hg19	11	56058116	56058116	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	OR8H1	NM_001005199	exon1	c.C423A	p.C141X	AAGAGCGCAACAC	.	129.0	53.0	125.0	0.0	.	89	.	.	Atlas-SNP
OSBP	5007	hgsc.bcm.edu	hg19	11	59361132	59361132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	OSBP	NM_002556	exon9	c.G1623C	p.Q541H	GATTTCCTGACGC	.	88.0	7.0	104.0	0.0	.	57	.	.	Atlas-SNP
STARD10	10809	hgsc.bcm.edu	hg19	11	72470359	72470359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	STARD10	NM_006645	exon3	c.G275T	p.R92L	TTCTTGCGGTACT	.	153.0	64.0	174.0	0.0	.	25	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92616466	92616466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FAT3	NM_001008781	exon23	c.G12844A	p.V4282M	GTGGTCGTGTGCA	.	72.0	14.0	92.0	0.0	.	1822	.	.	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101833467	101833467	+	Silent	SNP	T	T	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	KIAA1377	NM_020802	exon6	c.T1701C	p.H567H	CATCCATGAGAGA	.	275.0	24.0	302.0	0.0	.	111	.	.	Atlas-SNP
ACAT1	38	hgsc.bcm.edu	hg19	11	108018101	108018101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ACAT1	NM_000019	exon12	c.T1268G	p.L423R	CCATGCTAATTCA	.	63.0	24.0	59.0	0.0	.	35	.	.	Atlas-SNP
OR8G2	26492	hgsc.bcm.edu	hg19	11	124096063	124096063	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	.	NM_001007249	exon1	c.G666A	p.T222T	CCTGACGCCTGCC	.	121.0	46.0	122.0	0.0	.	.	.	.	Atlas-SNP
CDKN1B	1027	hgsc.bcm.edu	hg19	12	12871119	12871119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CDKN1B	NM_004064	exon1	c.G346T	p.A116S	CCGGCGGCGCCTT	.	973.0	365.0	1050.0	2.0	.	48	.	.	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62946910	62946910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	MON2	NM_015026	exon24	c.G3166T	p.G1056X	GCGCATGGAACTT	.	179.0	59.0	174.0	0.0	.	160	.	.	Atlas-SNP
CPSF6	11052	hgsc.bcm.edu	hg19	12	69652698	69652698	+	Silent	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	CPSF6_ENST00000435070,caecum,carcinoma,0,2	CPSF6	NM_007007	exon6	c.G1023T	p.P341P	TCCTCCGCATCTT	.	76.0	33.0	87.0	0.0	.	96	.	.	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	hg19	12	125434543	125434543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	DHX37	NM_032656	exon25	c.G3279T	p.K1093N	CCACGTCTTCAGC	.	91.0	28.0	133.0	0.0	.	114	.	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	hg19	15	55965587	55965587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PRTG	NM_173814	exon10	c.A1834G	p.K612E	TAGCTTTGGGCGT	.	100.0	17.0	104.0	0.0	.	110	.	.	Atlas-SNP
IGDCC3	9543	hgsc.bcm.edu	hg19	15	65624285	65624285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	IGDCC3	NM_004884	exon7	c.A1142G	p.N381S	CTGTTGTTATTCT	.	15.0	7.0	26.0	0.0	.	82	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75981258	75981258	+	Silent	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CSPG4	NM_001897	exon3	c.G2148T	p.G716G	ACCTGCCCCCTGC	.	58.0	6.0	60.0	0.0	.	175	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	347107	347107	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	AXIN1	NM_181050	exon7	c.G1904A	p.W635X	ATGATCCACTGCA	.	18.0	9.0	36.0	0.0	.	290	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2108810	2108810	+	Nonsense_Mutation	SNP	G	G	A	rs45517140		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TSC2	NM_001114382	exon10	c.G911A	p.W304X	CTCTCTGGGGAGC	.	31.0	13.0	44.0	0.0	.	364	.	.	Atlas-SNP
ZP2	7783	hgsc.bcm.edu	hg19	16	21212847	21212847	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ZP2	NM_003460	exon14	c.G1537T	p.E513X	GGTACTCGTTTTC	.	127.0	66.0	199.0	0.0	.	92	.	.	Atlas-SNP
SETD6	79918	hgsc.bcm.edu	hg19	16	58552349	58552349	+	Missense_Mutation	SNP	G	G	T	rs11865588	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	SETD6	NM_001160305	exon7	c.G1018T	p.D340Y	CGCTGGGATTTCC	.	93.0	52.0	174.0	0.0	.	27	.	G|0.995;A|0.005	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	hg19	16	70176519	70176519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PDPR	NM_017990	exon13	c.C1535G	p.S512C	TGGAGTCTGAAGT	.	49.0	30.0	94.0	0.0	.	66	.	.	Atlas-SNP
ADAT1	23536	hgsc.bcm.edu	hg19	16	75654670	75654670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ADAT1	NM_012091	exon3	c.C28A	p.L10I	AGCATAGCTGAGC	.	34.0	21.0	54.0	0.0	.	45	.	.	Atlas-SNP
CCT6B	10693	hgsc.bcm.edu	hg19	17	33281459	33281459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CCT6B	NM_006584	exon4	c.G496A	p.D166N	AGACATCAGCCAG	.	86.0	30.0	104.0	0.0	.	63	.	.	Atlas-SNP
KRT13	3860	hgsc.bcm.edu	hg19	17	39659673	39659673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	KRT13	NM_002274	exon3	c.C601T	p.R201C	TCTGGCGCAGGGC	.	65.0	25.0	87.0	0.0	.	72	.	.	Atlas-SNP
RSAD1	55316	hgsc.bcm.edu	hg19	17	48561893	48561893	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	RSAD1	NM_018346	exon8	c.C1198T	p.Q400X	CTACTGCAGCTGG	.	44.0	18.0	30.0	0.0	.	36	.	.	Atlas-SNP
APPBP2	10513	hgsc.bcm.edu	hg19	17	58533692	58533692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	APPBP2	NM_006380	exon10	c.A1112G	p.D371G	AGATGATCTTCAG	.	107.0	47.0	103.0	0.0	.	48	.	.	Atlas-SNP
TRIM65	201292	hgsc.bcm.edu	hg19	17	73888160	73888160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TRIM65	NM_001256124	exon4	c.G851A	p.C284Y	AGGCCACACAGCC	.	102.0	38.0	110.0	0.0	.	23	.	.	Atlas-SNP
EIF4A3	9775	hgsc.bcm.edu	hg19	17	78110084	78110084	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	EIF4A3	NM_014740	exon10	c.A1034T	p.Q345L	GACACCTGAGGGA	.	194.0	53.0	272.0	0.0	.	35	.	.	Atlas-SNP
DOK6	220164	hgsc.bcm.edu	hg19	18	67365697	67365697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	DOK6	NM_152721	exon5	c.C467T	p.T156I	AATGCACAATGCA	.	111.0	32.0	113.0	0.0	.	56	.	.	Atlas-SNP
SCAMP4	113178	hgsc.bcm.edu	hg19	19	1924197	1924197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	SCAMP4	NM_079834	exon7	c.G604C	p.E202Q	TCGAGGGAGGCCC	.	122.0	69.0	89.0	0.0	.	7	.	.	Atlas-SNP
NFIC	4782	hgsc.bcm.edu	hg19	19	3366645	3366645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	NFIC	NM_001245004	exon1	c.C11T	p.S4F	ATTCGTCCCCGCT	.	133.0	31.0	104.0	0.0	.	36	.	.	Atlas-SNP
DPP9	91039	hgsc.bcm.edu	hg19	19	4695441	4695441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	DPP9	NM_139159	exon12	c.G1302T	p.R434S	GACATTCCTGGGG	.	232.0	60.0	161.0	0.0	.	59	.	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10112250	10112250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	COL5A3	NM_015719	exon8	c.G1060A	p.D354N	GGAAGTCAGGGCC	.	132.0	43.0	98.0	0.0	.	243	.	.	Atlas-SNP
PPAN	56342	hgsc.bcm.edu	hg19	19	10218693	10218693	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PPAN	NM_020230	exon5	c.G396A	p.E132E	GCACGAGCAGCAG	.	123.0	23.0	79.0	0.0	.	43	.	.	Atlas-SNP
TNPO2	30000	hgsc.bcm.edu	hg19	19	12822419	12822419	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	TNPO2	NM_013433	exon10	c.C899G	p.P300R	AAGATGGGGATCA	.	73.0	39.0	63.0	0.0	.	108	.	.	Atlas-SNP
EPHX3	79852	hgsc.bcm.edu	hg19	19	15343002	15343002	+	Silent	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	EPHX3	NM_001142886	exon2	c.C21A	p.T7T	CAGCGCGGTCACC	.	30.0	18.0	22.0	0.0	.	22	.	.	Atlas-SNP
SARS2	54938	hgsc.bcm.edu	hg19	19	39412662	39412662	+	Silent	SNP	T	T	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	SARS2	NM_001145901	exon4	c.A450T	p.P150P	CTGGCCTGGGAAT	.	199.0	81.0	166.0	0.0	.	33	.	.	Atlas-SNP
FCAR	2204	hgsc.bcm.edu	hg19	19	55401023	55401023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FCAR	NM_002000	exon5	c.C658G	p.H220D	TCCATCCACCAAG	.	53.0	24.0	54.0	0.0	.	110	.	.	Atlas-SNP
XRN2	22803	hgsc.bcm.edu	hg19	20	21312420	21312420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	XRN2,colon,carcinoma,0,1	XRN2	NM_012255	exon8	c.G664T	p.D222Y	AACCATGACCCAA	.	111.0	48.0	170.0	0.0	.	90	.	.	Atlas-SNP
ACTL10	170487	hgsc.bcm.edu	hg19	20	32256018	32256018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	.	NM_001024675	exon1	c.C715A	p.L239M	TCCAGGCTGCTGT	.	89.0	5.0	95.0	0.0	.	.	.	.	Atlas-SNP
PLCG1	5335	hgsc.bcm.edu	hg19	20	39791106	39791106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	PLCG1	NM_182811	exon5	c.A527T	p.D176V	CCAAGGACCTGAA	.	104.0	30.0	102.0	0.0	.	111	.	.	Atlas-SNP
CLIC6	54102	hgsc.bcm.edu	hg19	21	36042758	36042758	+	Silent	SNP	C	C	T	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	CLIC6	NM_053277	exon1	c.C1071T	p.D357D	CGAGGACAGGGTA	.	163.0	12.0	165.0	0.0	.	49	.	.	Atlas-SNP
MMP11	4320	hgsc.bcm.edu	hg19	22	24123543	24123543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	MMP11	NM_005940	exon6	c.G1022A	p.S341N	TGCCCAGCCCTGT	.	38.0	14.0	55.0	0.0	.	53	.	.	Atlas-SNP
THOC5	8563	hgsc.bcm.edu	hg19	22	29913067	29913067	+	Silent	SNP	C	C	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	THOC5	NM_001002878	exon18	c.G1632C	p.L544L	CCCAGCCAGTCCC	.	99.0	39.0	151.0	0.0	.	58	.	.	Atlas-SNP
ASCC2	84164	hgsc.bcm.edu	hg19	22	30202839	30202839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ASCC2	NM_032204	exon10	c.G963T	p.E321D	GAAAATCTCCATT	.	73.0	13.0	98.0	0.0	.	53	.	.	Atlas-SNP
DDX17	10521	hgsc.bcm.edu	hg19	22	38890032	38890032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	DDX17	NM_006386	exon9	c.G1319T	p.R440I	CCATCTCTGCGCA	.	107.0	36.0	106.0	0.0	.	73	.	.	Atlas-SNP
ARSA	410	hgsc.bcm.edu	hg19	22	51066154	51066154	+	Silent	SNP	G	G	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ARSA	NM_001085426	exon2	c.C54T	p.A18A	GGCAACGGCCAGG	.	523.0	205.0	569.0	0.0	.	19	.	.	Atlas-SNP
ZNF157	7712	hgsc.bcm.edu	hg19	X	47272152	47272152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	ZNF157	NM_003446	exon4	c.T680A	p.F227Y	AATCTTTTGGCAG	.	162.0	125.0	156.0	1.0	.	46	.	.	Atlas-SNP
THOC2	57187	hgsc.bcm.edu	hg19	X	122761595	122761595	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	THOC2	NM_001081550	exon23	c.A2706C	p.E902D	ATTGACTTCTCGT	.	155.0	18.0	114.0	0.0	.	310	.	.	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63553964	63553964	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	AXIN2	NM_004655	exon2	c.776delC	p.A259fs	.	.	81.0	28.0	96.0	0.0	.	92	.	.	Atlas-Indel,Pindel
RASA1	5921	hgsc.bcm.edu	hg19	5	86564557	86564577	+	In_Frame_Del	DEL	GGTGCTGCTGCTGGCGTGGCC	GGTGCTGCTGCTGGCGTGGCC	-	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	GGTGCTGCTGCTGGCGTGGCC	GGTGCTGCTGCTGGCGTGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	RASA1	NM_002890	exon1	c.288_308del	p.96_103del	.	.	89.0	21.0	89.0	0.0	.	213	.	.	Atlas-Indel,Pindel
FN1	2335	hgsc.bcm.edu	hg19	2	216248812	216248813	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-CC-A9FS-01A-11D-A36X-10	TCGA-CC-A9FS-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	353e3047-6c29-4edb-8adb-f19e6d570a0f	c0bdfb14-d7ae-4bb0-a5bf-5c16a0c65e29	.	FN1	NM_212482	exon30	c.4825_4826insT	p.V1609fs	.	.	118.0	34.0	110.0	0.0	.	521	.	.	Atlas-Indel,Pindel
