Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SLC2A5	6518	hgsc.bcm.edu	hg19	1	9097670	9097670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC2A5	NM_003039	exon12	c.T1481C	p.L494P	GGTGGAAGCTCTT	.	140.0	14.0	148.0	0.0	.	77	.	.	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11562021	11562021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTCHD2	NM_020780	exon2	c.T972G	p.D324E	CAAGGATCTGCCG	.	84.0	11.0	97.0	0.0	.	193	.	.	Atlas-SNP
TMEM53	79639	hgsc.bcm.edu	hg19	1	45120780	45120780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM53	NM_024587	exon3	c.G285T	p.E95D	GAGCAGCTCGAGC	.	67.0	56.0	107.0	0.0	.	40	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108315394	108315394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	VAV3	NM_006113	exon5	c.A518C	p.Y173S	TCCTCATAGACTT	.	179.0	16.0	185.0	0.0	.	176	.	.	Atlas-SNP
GDAP2	54834	hgsc.bcm.edu	hg19	1	118454654	118454654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	GDAP2,colon,carcinoma,0,1	GDAP2	NM_017686	exon5	c.G521A	p.R174H	TAACCACGTTTTG	.	355.0	274.0	433.0	0.0	.	37	.	.	Atlas-SNP
TMEM79	84283	hgsc.bcm.edu	hg19	1	156255314	156255314	+	Silent	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMEM79	NM_032323	exon2	c.A297T	p.P99P	TGAACCAGAGCCC	.	192.0	53.0	78.0	0.0	.	43	.	.	Atlas-SNP
KIRREL	55243	hgsc.bcm.edu	hg19	1	158059385	158059385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KIRREL	NM_018240	exon9	c.G1138A	p.V380M	ATCGGAGTGGCTG	.	174.0	47.0	85.0	0.0	.	346	.	.	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	172100413	172100413	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNM3	NM_001136127	exon14	c.G1644C	p.W548C	GTCCTGGTATAAA	.	231.0	80.0	132.0	0.0	.	85	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	hg19	1	183085929	183085929	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LAMC1	NM_002293	exon8	c.A1455G	p.E485E	TCTGGAATCATCT	.	572.0	150.0	293.0	0.0	.	176	.	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	hg19	1	186648333	186648333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PTGS2	NM_000963	exon3	c.C170T	p.P57L	AATTCCGCTGCAA	.	581.0	35.0	291.0	0.0	.	144	.	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186948491	186948491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PLA2G4A	NM_024420	exon17	c.G2005T	p.D669Y	GACTTTGATATTT	.	603.0	205.0	401.0	1.0	.	125	.	.	Atlas-SNP
ARL8A	127829	hgsc.bcm.edu	hg19	1	202104642	202104642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARL8A	NM_138795	exon5	c.G385C	p.G129R	TGTTACCCAGGAC	.	155.0	40.0	114.0	0.0	.	14	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237905615	237905615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RYR2	NM_001035	exon80	c.A11111T	p.D3704V	AGGAAGATGACGA	.	364.0	70.0	219.0	0.0	.	1273	.	.	Atlas-SNP
PGBD2	267002	hgsc.bcm.edu	hg19	1	249211815	249211815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PGBD2	NM_170725	exon3	c.G1032A	p.L344L	TTTTCTGCCATAT	.	386.0	89.0	169.0	0.0	.	103	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21228862	21228862	+	Silent	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	APOB	NM_000384	exon26	c.T10878G	p.T3626T	GTTCTTAGTGTTA	.	350.0	115.0	273.0	0.0	.	761	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97285440	97285440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001115016	exon4	c.C446G	p.S149C	CGGTCAGACTGCA	.	302.0	158.0	229.0	0.0	.	.	.	.	Atlas-SNP
MERTK	10461	hgsc.bcm.edu	hg19	2	112786337	112786337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MERTK	NM_006343	exon19	c.G2896C	p.G966R	AGGAATGGGGTCT	.	80.0	28.0	68.0	0.0	.	112	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153496548	153496548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FMNL2	NM_052905	exon24	c.T3023A	p.L1008Q	AAGCTCTGATGGA	.	491.0	246.0	342.0	0.0	.	75	.	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	165948928	165948928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SCN3A	NM_006922	exon27	c.A4643G	p.D1548G	TGGTCATCCGTTT	.	413.0	204.0	368.0	0.0	.	544	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179510675	179510675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TTN	NM_001267550	exon217	c.T40380A	p.D13460E	CTTCACATCTTCC	.	604.0	30.0	437.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196674472	196674472	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH7	NM_018897	exon52	c.G9885A	p.R3295R	GACCGCCCGCTCA	.	515.0	160.0	283.0	0.0	.	512	.	.	Atlas-SNP
BZW1	9689	hgsc.bcm.edu	hg19	2	201677965	201677965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BZW1	NM_001207068	exon2	c.C121T	p.P41S	CAAAAGCCAACGC	.	117.0	62.0	98.0	0.0	.	49	.	.	Atlas-SNP
COPS8	10920	hgsc.bcm.edu	hg19	2	237998516	237998516	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COPS8	NM_006710	exon4	c.A210G	p.E70E	TTCTGAACTTGGG	.	79.0	42.0	157.0	0.0	.	14	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4726834	4726834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITPR1	NM_001099952	exon30	c.C3619T	p.R1207W	CTGCTCCGGAACA	.	70.0	30.0	90.0	0.0	.	659	.	.	Atlas-SNP
MTMR14	64419	hgsc.bcm.edu	hg19	3	9703950	9703950	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MTMR14	NM_001077525	exon3	c.309-1G>A	.	GTGTTAGGTTTGA	.	188.0	39.0	204.0	0.0	.	43	.	.	Atlas-SNP
USP19	10869	hgsc.bcm.edu	hg19	3	49145886	49145886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	USP19	NM_001199161	exon27	c.C4114T	p.R1372W	CTGGCCGATCCAC	.	49.0	14.0	56.0	0.0	.	158	.	.	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	hg19	3	56681065	56681065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM208A	NM_001112736	exon14	c.G1700A	p.G567D	CCTGAACCAAAAC	.	189.0	93.0	194.0	0.0	.	113	.	.	Atlas-SNP
ADCY5	111	hgsc.bcm.edu	hg19	3	123166600	123166600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	ADCY5,NS,carcinoma,0,1	ADCY5	NM_183357	exon1	c.C793A	p.P265T	GGAGCGGGGGCCG	.	66.0	17.0	50.0	0.0	.	169	.	.	Atlas-SNP
RNF13	11342	hgsc.bcm.edu	hg19	3	149589886	149589886	+	Missense_Mutation	SNP	C	C	T	rs138683130		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF13	NM_007282	exon5	c.C266T	p.S89L	ACAATTCATCTGG	.	221.0	36.0	263.0	0.0	.	57	.	C|1.000;T|0.000	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	hg19	3	183056602	183056602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MCF2L2	NM_015078	exon5	c.A472C	p.K158Q	TCGTTTTAAACTC	.	147.0	51.0	151.0	0.0	.	164	.	.	Atlas-SNP
LEPREL1	55214	hgsc.bcm.edu	hg19	3	189700835	189700835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LEPREL1	NM_018192	exon8	c.G1324A	p.G442S	ACTTACCTTCTCT	.	365.0	21.0	396.0	0.0	.	95	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193028474	193028474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP13A5	NM_198505	exon21	c.G2478T	p.M826I	AGGAGACATTCTT	.	167.0	10.0	154.0	0.0	.	171	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3230361	3230361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	HTT	NM_002111	exon58	c.G7868T	p.W2623L	CCGTGTGGCTGGG	.	80.0	38.0	57.0	0.0	.	221	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39878616	39878616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDS5A	NM_001100399	exon19	c.G2150A	p.R717Q	CACGATCGTATCT	.	437.0	30.0	302.0	0.0	.	114	.	.	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	hg19	4	71346650	71346650	+	Nonsense_Mutation	SNP	T	T	A	rs147746777	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC7	NM_001145007	exon4	c.T189A	p.Y63X	GTCCTATAAATGT	.	273.0	12.0	214.0	0.0	.	91	.	T|1.000;C|0.000	Atlas-SNP
TNIP3	79931	hgsc.bcm.edu	hg19	4	122078361	122078361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TNIP3	NM_001244764	exon7	c.G482T	p.R161I	AGGAATCTTTCCG	.	364.0	132.0	335.0	1.0	.	58	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7773143	7773143	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	ADCY2,NS,carcinoma,+2,1	ADCY2	NM_020546	exon18	c.G2313A	p.V771V	CTTGGTGGGCTAC	.	412.0	186.0	382.0	0.0	.	337	.	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38406944	38406944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EGFLAM	NM_001205301	exon8	c.T843A	p.P281P	ACTTCCTGCTACC	.	338.0	21.0	319.0	0.0	.	302	.	.	Atlas-SNP
C5orf28	64417	hgsc.bcm.edu	hg19	5	43446540	43446540	+	Silent	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C5orf28	NM_022483	exon3	c.T432G	p.L144L	CCAGGGAAGAAAG	.	214.0	13.0	195.0	0.0	.	25	.	.	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	hg19	5	80021280	80021280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MSH3	NM_002439	exon9	c.A1349G	p.D450G	TGCAGGATGACAG	.	388.0	16.0	317.0	0.0	.	129	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89933635	89933635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GPR98	NM_032119	exon11	c.C2110A	p.P704T	GTGACCCCGGATG	.	144.0	12.0	106.0	0.0	.	605	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139915024	139915024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ANKHD1	NM_017747	exon30	c.G6928A	p.G2310R	ATACCAGGAACAA	.	288.0	115.0	252.0	0.0	.	233	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167643791	167643791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001122679	exon22	c.A4070G	p.N1357S	ACAAGAATGGGCT	.	267.0	98.0	219.0	0.0	.	.	.	.	Atlas-SNP
HIST1H2BB	3018	hgsc.bcm.edu	hg19	6	26043596	26043596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	HIST1H2BB,NS,carcinoma,+1,1	HIST1H2BB	NM_021062	exon1	c.C290T	p.T97M	ACAGCCGTCTGAA	.	175.0	12.0	160.0	1.0	.	20	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32010105	32010105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TNXB	NM_019105	exon41	c.T12239G	p.F4080C	CTCCAGAAGTCTG	.	1240.0	314.0	1140.0	2.0	.	553	.	.	Atlas-SNP
FRS3	10817	hgsc.bcm.edu	hg19	6	41738507	41738507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FRS3	NM_006653	exon7	c.G1329T	p.M443I	GGTGGGCATGGGG	.	59.0	22.0	72.0	0.0	.	53	.	.	Atlas-SNP
C6orf57	135154	hgsc.bcm.edu	hg19	6	71298368	71298368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C6orf57	NM_145267	exon3	c.G268C	p.G90R	CCCAGGGGCCCAG	.	281.0	120.0	262.0	0.0	.	13	.	.	Atlas-SNP
MB21D1	115004	hgsc.bcm.edu	hg19	6	74161889	74161889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MB21D1	NM_138441	exon1	c.G16A	p.G6R	CCTTTCCGTGCCA	.	110.0	25.0	69.0	0.0	.	33	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76599823	76599823	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYO6	NM_004999	exon26	c.T2708G	p.V903G	CACTGGTTAAAAG	.	325.0	123.0	273.0	0.0	.	124	.	.	Atlas-SNP
UBE2J1	51465	hgsc.bcm.edu	hg19	6	90053437	90053437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UBE2J1	NM_016021	exon2	c.G70T	p.D24Y	TTGGATCTTTCAA	.	82.0	64.0	96.0	0.0	.	28	.	.	Atlas-SNP
RNF217	154214	hgsc.bcm.edu	hg19	6	125402633	125402633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RNF217	NM_152553	exon7	c.G659T	p.G220V	CACTAGGGGCCAT	.	325.0	30.0	303.0	0.0	.	64	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144765510	144765510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UTRN	NM_007124	exon13	c.G1606T	p.E536X	TTATTGGAAGAAC	.	42.0	29.0	51.0	0.0	.	327	.	.	Atlas-SNP
RAB32	10981	hgsc.bcm.edu	hg19	6	146865246	146865246	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAB32	NM_006834	exon1	c.G239A	p.W80X	AGCTGTGGGACAT	.	133.0	17.0	136.0	0.0	.	16	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7571014	7571014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL28A1	NM_001037763	exon3	c.G646A	p.D216N	TTGGATCACTCAA	.	148.0	50.0	124.0	0.0	.	113	.	.	Atlas-SNP
SNX13	23161	hgsc.bcm.edu	hg19	7	17833732	17833732	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SNX13	NM_015132	exon26	c.G2811A	p.K937K	CATCTGCTTTGAC	.	707.0	37.0	463.0	0.0	.	113	.	.	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	hg19	7	53104219	53104219	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	POM121L12	NM_182595	exon1	c.C855T	p.L285L	CGCCCTCGAGGTC	.	142.0	80.0	80.0	0.0	.	146	.	.	Atlas-SNP
NUPR1L	389493	hgsc.bcm.edu	hg19	7	56183794	56183794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001145712	exon1	c.G214A	p.V72I	GCGCGACCTTGCG	.	38.0	20.0	7.0	0.0	.	.	.	.	Atlas-SNP
CDK14	5218	hgsc.bcm.edu	hg19	7	90355912	90355912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CDK14	NM_012395	exon2	c.G101T	p.C34F	GGAACTGCCAGGG	.	194.0	11.0	180.0	0.0	.	153	.	.	Atlas-SNP
PVRIG	79037	hgsc.bcm.edu	hg19	7	99817335	99817335	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PVRIG	.	.	.	.	TCCCCAGGCCTAG	.	33.0	16.0	15.0	0.0	.	20	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113518905	113518905	+	Missense_Mutation	SNP	C	C	G	rs4304271	byhapmap;alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	PPP1R3A,caecum,carcinoma,0,1	PPP1R3A	NM_002711	exon4	c.G2242C	p.E748Q	CTTTTTCTCTAGC	.	143.0	48.0	121.0	0.0	.	317	.	C|1.000;|0.000	Atlas-SNP
MDFIC	29969	hgsc.bcm.edu	hg19	7	114655974	114655974	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MDFIC	NM_199072	exon5	c.T1053C	p.I351I	TGGAATTTGTTTT	.	267.0	106.0	225.0	0.0	.	30	.	.	Atlas-SNP
MKRN1	23608	hgsc.bcm.edu	hg19	7	140156621	140156621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MKRN1	NM_013446	exon5	c.G817T	p.V273L	GCTGCACGGCAAA	.	129.0	45.0	103.0	0.0	.	35	.	.	Atlas-SNP
KEL	3792	hgsc.bcm.edu	hg19	7	142639989	142639989	+	Silent	SNP	G	G	A	rs367661434		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KEL	NM_000420	exon17	c.C1914T	p.D638D	CCCAACGTCTGCA	.	147.0	8.0	121.0	0.0	.	128	.	.	Atlas-SNP
ZNF783	0	hgsc.bcm.edu	hg19	7	148963616	148963616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF783	NM_001195220	exon2	c.G215T	p.G72V	GCACGGGGACAGC	.	68.0	19.0	49.0	0.0	.	28	.	.	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	hg19	8	53569525	53569525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RB1CC1	NM_001083617	exon15	c.G2864A	p.R955Q	ATTTCTCGTGACT	.	356.0	16.0	359.0	0.0	.	163	.	.	Atlas-SNP
XKR9	389668	hgsc.bcm.edu	hg19	8	71646369	71646369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	XKR9	NM_001011720	exon5	c.A832G	p.I278V	TTTAATATTAAGG	.	895.0	44.0	544.0	0.0	.	43	.	.	Atlas-SNP
RDH10	157506	hgsc.bcm.edu	hg19	8	74209535	74209535	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RDH10	NM_172037	exon2	c.C396T	p.V132V	AAGAGTCCGCAAG	.	445.0	19.0	252.0	0.0	.	31	.	.	Atlas-SNP
INTS8	55656	hgsc.bcm.edu	hg19	8	95839952	95839952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INTS8	NM_017864	exon4	c.C449A	p.A150E	TCAGGGCAATTAG	.	271.0	11.0	173.0	0.0	.	92	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131793001	131793001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADCY8	NM_001115	exon18	c.C3391T	p.Q1131X	GGACTTGGATCCG	.	127.0	35.0	93.0	0.0	.	291	.	.	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718691	2718691	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	KCNV2	NM_133497	exon1	c.C952T	p.L318L	GAGTACCTGCTGC	.	97.0	9.0	113.0	0.0	.	72	.	.	Atlas-SNP
NFIB	4781	hgsc.bcm.edu	hg19	9	14307000	14307000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFIB	NM_001190738	exon2	c.G628A	p.V210M	CCTGCACGTAGTA	.	157.0	83.0	160.0	0.0	.	91	.	.	Atlas-SNP
SH3GL2	6456	hgsc.bcm.edu	hg19	9	17787406	17787406	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3GL2	NM_003026	exon5	c.C360A	p.A120A	GGAGGCCATGCGG	.	49.0	9.0	95.0	0.0	.	60	.	.	Atlas-SNP
TUSC1	286319	hgsc.bcm.edu	hg19	9	25677928	25677928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TUSC1	NM_001004125	exon1	c.G392A	p.R131Q	GGGACCCGGCGTG	.	37.0	8.0	26.0	0.0	.	7	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27228230	27228230	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TEK	NM_000459	exon22	c.G3227T	p.R1076L	GCTGGCGGGAGAA	.	99.0	27.0	105.0	0.0	.	250	.	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	hg19	9	88934568	88934568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZCCHC6	NM_024617	exon15	c.A3046T	p.I1016F	CTATAATTGTTGG	.	90.0	19.0	87.0	0.0	.	105	.	.	Atlas-SNP
WDR31	114987	hgsc.bcm.edu	hg19	9	116082738	116082738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	WDR31,NS,malignant_melanoma,0,1	WDR31	NM_001012361	exon9	c.C679G	p.P227A	TTGCAGGAAACAT	.	121.0	61.0	142.0	0.0	.	23	.	.	Atlas-SNP
LYZL1	84569	hgsc.bcm.edu	hg19	10	29599920	29599920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LYZL1	NM_032517	exon5	c.C517A	p.Q173K	CTCAGGCAAGGCT	.	195.0	104.0	159.0	0.0	.	25	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49661391	49661391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ARHGAP22	NM_001256024	exon8	c.A992G	p.N331S	AGAATGTTAGGTC	.	282.0	17.0	244.0	0.0	.	94	.	.	Atlas-SNP
TCTN3	26123	hgsc.bcm.edu	hg19	10	97447351	97447351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TCTN3	NM_015631	exon4	c.A625T	p.R209W	TCACCCTGTAAAA	.	208.0	117.0	141.0	0.0	.	66	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117607492	117607492	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATRNL1	NM_207303	exon28	c.T4008A	p.P1336P	TCCCCCTGGGCAG	.	229.0	70.0	207.0	0.0	.	219	.	.	Atlas-SNP
DUSP8	1850	hgsc.bcm.edu	hg19	11	1586842	1586842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DUSP8	NM_004420	exon2	c.C215T	p.P72L	GCAGCCGGCTGGA	.	108.0	23.0	126.0	0.0	.	22	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6566486	6566486	+	Silent	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNHD1	NM_144666	exon21	c.T4317A	p.P1439P	CCTTCCTCTGCAT	.	53.0	12.0	77.0	0.0	.	198	.	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	hg19	11	36597714	36597714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RAG1	NM_000448	exon2	c.G2860T	p.G954C	AGGGATGGCTCCA	.	114.0	45.0	117.0	0.0	.	151	.	.	Atlas-SNP
OR8K1	390157	hgsc.bcm.edu	hg19	11	56113637	56113637	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR8K1	NM_001002907	exon1	c.T123C	p.Y41Y	CATATATCTGGTC	.	343.0	21.0	374.0	0.0	.	93	.	.	Atlas-SNP
SMTNL1	219537	hgsc.bcm.edu	hg19	11	57317551	57317551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SMTNL1	NM_001105565	exon7	c.T1451G	p.V484G	GCCTTGTGCAGAA	.	120.0	53.0	137.0	0.0	.	68	.	.	Atlas-SNP
MS4A6A	64231	hgsc.bcm.edu	hg19	11	59947427	59947427	+	Silent	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	MS4A6A_ENST00000529054,NS,carcinoma,0,2	MS4A6A	NM_001247999	exon4	c.C243A	p.I81I	ACACAAGATCTGG	.	163.0	86.0	158.0	0.0	.	85	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92565042	92565042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAT3	NM_001008781	exon13	c.C9736T	p.P3246S	ACGGTGCCTGAGG	.	76.0	21.0	129.0	0.0	.	1822	.	.	Atlas-SNP
PANX1	24145	hgsc.bcm.edu	hg19	11	93911635	93911635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PANX1	NM_015368	exon3	c.T422C	p.F141S	TGAAGTTTATCAT	.	234.0	13.0	272.0	0.0	.	38	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	CEP164,caecum,carcinoma,0,1	CEP164	NM_001271933	exon4	c.A347G	p.K116R	AAAAAAAGGAAAA	.	74.0	6.0	71.0	0.0	.	121	.	.	Atlas-SNP
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10150973	10150973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CLEC1B	NM_016509	exon2	c.C71A	p.S24Y	GATGCAGAGCCAA	.	244.0	11.0	238.0	0.0	.	39	.	.	Atlas-SNP
ABCD2	225	hgsc.bcm.edu	hg19	12	39973407	39973407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ABCD2	NM_005164	exon8	c.A1807T	p.M603L	AGTCCATAACAGC	.	64.0	36.0	24.0	0.0	.	127	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40745384	40745384	+	Missense_Mutation	SNP	G	G	A	rs371284884		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LRRK2	NM_198578	exon44	c.G6425A	p.R2142K	TGACGAGACGCAT	.	179.0	10.0	195.0	0.0	.	763	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43769288	43769288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ADAMTS20	NM_025003	exon36	c.T5340A	p.F1780L	CCCATTAAAAGGA	.	314.0	16.0	269.0	0.0	.	635	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57599015	57599015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LRP1	NM_002332	exon73	c.A11318G	p.E3773G	CTGACGAGGAGGA	.	75.0	19.0	69.0	0.0	.	428	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117696859	117696859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NOS1	NM_000620	exon15	c.G2444T	p.G815V	CCATTGCCAAAGG	.	161.0	39.0	140.0	0.0	.	240	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124399402	124399402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DNAH10	NM_207437	exon61	c.G10224T	p.W3408C	CAGATGGGGATCC	.	130.0	21.0	95.0	0.0	.	888	.	.	Atlas-SNP
PDX1	3651	hgsc.bcm.edu	hg19	13	28498525	28498525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PDX1	NM_000209	exon2	c.C539T	p.A180V	AGCTGGCTGTCAT	.	82.0	66.0	104.0	0.0	.	7	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	48881512	48881512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	RB1_ENST00000267163,colon,carcinoma,+1,2	RB1	NM_000321	exon2	c.G234A	p.W78X	AACTTGGGAGAAA	.	235.0	173.0	247.0	0.0	.	1068	.	.	Atlas-SNP
DCT	1638	hgsc.bcm.edu	hg19	13	95131263	95131263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	DCT_ENST00000446125,colon,carcinoma,0,2	DCT	NM_001129889	exon1	c.C247T	p.R83C	GCTCACGGTCATC	.	101.0	48.0	100.0	0.0	.	186	.	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	hg19	14	29237217	29237217	+	Silent	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FOXG1	NM_005249	exon1	c.C732A	p.R244R	GCCGCGCCACTAC	.	91.0	23.0	126.0	0.0	.	92	.	.	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	hg19	14	95918595	95918595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNE3	NM_152592	exon6	c.G1263A	p.Q421Q	ATACTCCTGGATG	.	112.0	29.0	118.0	0.0	.	130	.	.	Atlas-SNP
INF2	64423	hgsc.bcm.edu	hg19	14	105174811	105174811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	INF2	NM_022489	exon9	c.G1774A	p.A592T	CCCGACGCCGAGG	.	85.0	15.0	84.0	0.0	.	148	.	.	Atlas-SNP
BTBD6	90135	hgsc.bcm.edu	hg19	14	105716439	105716439	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	BTBD6	NM_033271	exon5	c.C888T	p.G296G	CAACGGCGCTGCC	.	41.0	25.0	48.0	0.0	.	24	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35212596	35212596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AQR	NM_014691	exon14	c.G1158T	p.L386F	TGGCAACAAGCAG	.	69.0	33.0	76.0	0.0	.	139	.	.	Atlas-SNP
FSIP1	161835	hgsc.bcm.edu	hg19	15	39909936	39909936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FSIP1	NM_152597	exon11	c.G1699A	p.D567N	CCTCACCTGCTAT	.	101.0	54.0	126.0	0.0	.	53	.	.	Atlas-SNP
MAPKBP1	23005	hgsc.bcm.edu	hg19	15	42115228	42115228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MAPKBP1	NM_001128608	exon29	c.G3424A	p.A1142T	AATGGTGCCAATC	.	61.0	31.0	60.0	0.0	.	120	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	86810275	86810275	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AGBL1	NM_152336	exon12	c.A1668G	p.S556S	TGAGTCAGGAAAT	.	260.0	144.0	290.0	0.0	.	151	.	.	Atlas-SNP
RHBDL1	9028	hgsc.bcm.edu	hg19	16	726998	726998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	RHBDL1	NM_003961	exon3	c.C649T	p.R217C	GGGGCCCGCCTCA	.	71.0	12.0	73.0	0.0	.	14	.	.	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4641701	4641701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	C16orf96	NM_001145011	exon10	c.A2627T	p.E876V	AGAAAGAAATGGA	.	338.0	52.0	264.0	0.0	.	28	.	.	Atlas-SNP
MYH11	4629	hgsc.bcm.edu	hg19	16	15931795	15931795	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYH11	NM_001040114	exon2	c.G315A	p.L105L	CTCCCTCAGGTTG	.	224.0	102.0	192.0	0.0	.	520	.	.	Atlas-SNP
DOC2A	8448	hgsc.bcm.edu	hg19	16	30018188	30018188	+	Silent	SNP	G	G	T	rs370463371	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOC2A	NM_003586	exon8	c.C796A	p.R266R	GTCCCCGGCGCCG	.	68.0	8.0	51.0	0.0	.	40	.	.	Atlas-SNP
FBXL19	54620	hgsc.bcm.edu	hg19	16	30958514	30958514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBXL19	NM_001099784	exon11	c.G2048A	p.R683H	CCTTCCGCTGCCC	.	24.0	9.0	14.0	0.0	.	74	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31426269	31426269	+	Missense_Mutation	SNP	G	G	A	rs200483957	bycluster	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ITGAD	NM_005353	exon18	c.G2240A	p.R747H	ACCTGCGTCCTGT	.	110.0	50.0	92.0	0.0	.	154	.	.	Atlas-SNP
SLC6A4	6532	hgsc.bcm.edu	hg19	17	28530206	28530206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC6A4	NM_001045	exon14	c.C1802T	p.P601L	GTCCCTGGAGTGA	.	196.0	13.0	135.0	0.0	.	60	.	.	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	33925274	33925274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AP2B1	NM_001282	exon3	c.A63T	p.E21D	AGCTGAACTCAAC	.	180.0	77.0	138.0	0.0	.	70	.	.	Atlas-SNP
TUBG1	7283	hgsc.bcm.edu	hg19	17	40766524	40766524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TUBG1	NM_001070	exon10	c.G1007A	p.S336N	ACAAGAGCTTGCA	.	182.0	17.0	158.0	0.0	.	25	.	.	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	hg19	17	47677798	47677798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SPOP	NM_001007228	exon10	c.T1067A	p.L356Q	GAAGCCAGAGAGC	.	146.0	69.0	103.0	0.0	.	91	.	.	Atlas-SNP
SLC16A6	9120	hgsc.bcm.edu	hg19	17	66270184	66270184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC16A6	NM_001174166	exon4	c.G260A	p.R87H	CCGAAACGATTGC	.	57.0	20.0	50.0	0.0	.	56	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73915917	73915917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FBF1	NM_001080542	exon19	c.G1925T	p.R642L	TCCTCCCGTTGCT	.	137.0	51.0	110.0	0.0	.	48	.	.	Atlas-SNP
TMC6	11322	hgsc.bcm.edu	hg19	17	76120679	76120679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	TMC6	NM_001127198	exon8	c.C817A	p.P273T	CCTGAGGGCCCAT	.	60.0	22.0	41.0	0.0	.	42	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80047248	80047248	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FASN	NM_004104	exon13	c.G1978T	p.E660X	CGAACTCAAACAC	.	120.0	19.0	74.0	0.0	.	154	.	.	Atlas-SNP
ZSCAN30	100101467	hgsc.bcm.edu	hg19	18	32843982	32843982	+	Missense_Mutation	SNP	C	C	T	rs368624179		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZSCAN30	NM_001166012	exon3	c.G335A	p.R112Q	TCTGGCCGATGCT	.	352.0	17.0	223.0	0.0	.	34	.	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47500944	47500944	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MYO5B	NM_001080467	exon10	c.G1098A	p.G366G	CTCCACCCCTAGC	.	133.0	52.0	105.0	0.0	.	178	.	.	Atlas-SNP
SH3GL1	6455	hgsc.bcm.edu	hg19	19	4361758	4361758	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SH3GL1	NM_003025	exon10	c.G946C	p.D316H	CGAAGTCGTACAG	.	50.0	42.0	54.0	0.0	.	52	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9074278	9074278	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MUC16	NM_024690	exon3	c.C13168T	p.Q4390X	CTGTTTGGGTGGT	.	395.0	36.0	529.0	0.0	.	4315	.	.	Atlas-SNP
OR7E24	26648	hgsc.bcm.edu	hg19	19	9362317	9362317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	OR7E24	NM_001079935	exon1	c.T598C	p.S200P	GACCCTTCTCAAC	.	271.0	18.0	307.0	0.0	.	48	.	.	Atlas-SNP
ZNF69	7620	hgsc.bcm.edu	hg19	19	12014498	12014498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF69	NM_021915	exon2	c.G132C	p.R44S	TTTCAGGAACCTG	.	679.0	386.0	385.0	0.0	.	27	.	.	Atlas-SNP
ZNF253	56242	hgsc.bcm.edu	hg19	19	20003387	20003387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	ZNF492,NS,carcinoma,0,2	ZNF253	NM_021047	exon4	c.G1331A	p.R444K	ATAAGAGAATTCA	.	233.0	15.0	122.0	0.0	.	99	.	.	Atlas-SNP
ZNF253	56242	hgsc.bcm.edu	hg19	19	20003414	20003414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ZNF253	NM_021047	exon4	c.A1358G	p.K453R	CTTACAAATGTGA	.	316.0	28.0	150.0	0.0	.	99	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36047867	36047867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP4A	NM_000704	exon12	c.C1817T	p.P606L	GCCCGGGGTGGGT	.	126.0	10.0	84.0	0.0	.	123	.	.	Atlas-SNP
NFKBIB	4793	hgsc.bcm.edu	hg19	19	39395721	39395721	+	Silent	SNP	C	C	A	rs142337920	alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NFKBIB	NM_002503	exon2	c.C246A	p.A82A	CTCGGCCGGCACT	.	326.0	130.0	214.0	0.0	.	23	.	C|1.000;T|0.000	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53008031	53008031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	.	NM_001099694	exon5	c.G187A	p.V63M	GAGGCTGTGGGTG	.	101.0	47.0	89.0	0.0	.	.	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9525047	9525047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAK7	NM_177990	exon8	c.A1838T	p.E613V	ATCACCTCAGGGG	.	64.0	42.0	134.0	0.0	.	194	.	.	Atlas-SNP
FOXS1	2307	hgsc.bcm.edu	hg19	20	30432421	30432421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	FOXS1,right_upper_lobe,carcinoma,0,1	FOXS1	NM_004118	exon1	c.G925A	p.G309S	CGGAGCCTCCCTG	.	235.0	12.0	138.0	1.0	.	29	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40049753	40049753	+	Missense_Mutation	SNP	T	T	A	rs140430642	bycluster;by1000genomes;alternate_allele	TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CHD6	NM_032221	exon31	c.A5522T	p.D1841V	TGCTGATCTGATG	.	89.0	54.0	116.0	0.0	.	312	.	T|1.000;C|0.000	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58467323	58467323	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYCP2	NM_014258	exon23	c.C2086T	p.Q696X	TTTGTTGCTGATT	.	687.0	327.0	502.0	1.0	.	204	.	.	Atlas-SNP
UCKL1	54963	hgsc.bcm.edu	hg19	20	62577849	62577849	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	UCKL1	NM_017859	exon2	c.G261A	p.W87X	ATTGTACCAGGGC	.	128.0	20.0	91.0	0.0	.	28	.	.	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	hg19	21	22664428	22664428	+	Silent	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NCAM2	NM_004540	exon5	c.G486A	p.R162R	AGATCGGTTCGCT	.	489.0	37.0	352.0	0.0	.	220	.	.	Atlas-SNP
LTN1	26046	hgsc.bcm.edu	hg19	21	30354673	30354673	+	Silent	SNP	A	A	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	LTN1	NM_015565	exon5	c.T732C	p.L244L	TTTTATAAGATGA	.	182.0	87.0	101.0	0.0	.	141	.	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	hg19	21	34067440	34067440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SYNJ1	NM_203446	exon5	c.G749A	p.R250Q	CCAGCTCGTTCAC	.	312.0	105.0	174.0	0.0	.	253	.	.	Atlas-SNP
SLC25A17	10478	hgsc.bcm.edu	hg19	22	41173261	41173261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SLC25A17	NM_006358	exon6	c.A568G	p.K190E	GCCGTTTTAAACC	.	195.0	73.0	262.0	0.0	.	25	.	.	Atlas-SNP
PPP6R2	9701	hgsc.bcm.edu	hg19	22	50876004	50876004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PPP6R2	NM_001242898	exon16	c.G1753C	p.E585Q	GATGAGGAGTTTG	.	86.0	33.0	90.0	0.0	.	71	.	.	Atlas-SNP
CNKSR2	22866	hgsc.bcm.edu	hg19	X	21550127	21550127	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	CNKSR2	NM_001168647	exon11	c.T1245C	p.Y415Y	TTGCTATGAATAT	.	345.0	66.0	354.0	0.0	.	158	.	.	Atlas-SNP
FAM47B	170062	hgsc.bcm.edu	hg19	X	34962850	34962850	+	Silent	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	FAM47B	NM_152631	exon1	c.C1902T	p.Y634Y	CAAGTACAAAGAA	.	212.0	15.0	244.0	0.0	.	209	.	.	Atlas-SNP
NOX1	27035	hgsc.bcm.edu	hg19	X	100105359	100105359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	NOX1	NM_013955	exon9	c.C914T	p.S305F	ACTTTGGATGGGT	.	183.0	103.0	248.0	0.0	.	79	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107834827	107834827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	COL4A5	NM_000495	exon21	c.C1376T	p.P459L	GCCCCCCAGGATC	.	566.0	150.0	735.0	0.0	.	262	.	.	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	hg19	X	110439120	110439120	+	Silent	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	PAK3	NM_001128168	exon13	c.T1269C	p.D423D	TAGAGATATAAAG	.	460.0	239.0	528.0	0.0	.	179	.	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117752664	117752664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	DOCK11	NM_144658	exon31	c.T3444G	p.H1148Q	AAAACATGCATTT	.	365.0	35.0	377.0	0.0	.	185	.	.	Atlas-SNP
GABRA3	2556	hgsc.bcm.edu	hg19	X	151393310	151393310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	GABRA3	NM_000808	exon6	c.A559G	p.I187V	CATGAATTGTTAA	.	702.0	199.0	854.0	0.0	.	97	.	.	Atlas-SNP
ATP6AP1	537	hgsc.bcm.edu	hg19	X	153657461	153657461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	ATP6AP1	NM_001183	exon2	c.T229A	p.Y77N	TCTACCTACTTAG	.	197.0	33.0	268.0	0.0	.	46	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	44112732	44112732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	EFCAB6	NM_022785	exon9	c.879delA	p.L293fs	.	.	295.0	117.0	428.0	0.0	.	177	.	.	Atlas-Indel,Pindel
USP42	84132	hgsc.bcm.edu	hg19	7	6189266	6189266	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	USP42_ENST00000306177,colon,carcinoma,0,2	USP42	NM_032172	exon13	c.1438delT	p.S480fs	.	.	278.0	57.0	206.0	0.0	.	138	.	.	Atlas-Indel,Pindel
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247024552	247024553	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	AHCTF1	NM_015446	exon29	c.3808_3809insA	p.C1270fs	.	.	904.0	217.0	424.0	0.0	.	187	.	.	Atlas-Indel,Pindel
MLH3	27030	hgsc.bcm.edu	hg19	14	75513372	75513372	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	MLH3	NM_014381	exon2	c.2988delA	p.G996fs	.	.	265.0	62.0	335.0	0.0	.	200	.	.	Atlas-Indel,Pindel
SOX2	6657	hgsc.bcm.edu	hg19	3	181431636	181431636	+	RNA	DEL	T	T	-	novel		TCGA-DD-A113-01A-11D-A12Z-10	TCGA-DD-A113-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c6c53601-c4c7-429b-9fac-cf9d3db20ab1	59993464-9550-4996-b7c9-ca8629febad1	.	SOX2	.	.	.	.	.	.	439.0	145.0	455.0	0.0	.	28	.	.	Atlas-Indel,Pindel
