Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLEKHN1	84069	hgsc.bcm.edu	hg19	1	909218	909218	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHN1	NM_032129	exon14	c.C1440T	p.L480L	GTTCCTCAGTGCC	.	72.0	4.0	89.0	0.0	.	49	.	.	Atlas-SNP
FAM132A	388581	hgsc.bcm.edu	hg19	1	1178923	1178923	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM132A	NM_001014980	exon5	c.C541T	p.Q181X	CACCTTGGGCAGC	.	43.0	4.0	38.0	0.0	.	12	.	.	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	hg19	1	10699170	10699170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASZ1	NM_001079843	exon21	c.C5109G	p.D1703E	GTCCTCGTCGTCG	.	39.0	6.0	24.0	0.0	.	150	.	.	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11574569	11574569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTCHD2	NM_020780	exon4	c.T1439C	p.L480P	ACATCCTCACCTC	.	84.0	4.0	131.0	0.0	.	193	.	.	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	hg19	1	15616080	15616080	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FHAD1	NM_052929	exon4	c.C486T	p.S162S	GGCCTCCCACAGG	.	79.0	4.0	64.0	0.0	.	78	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16254866	16254866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPEN	NM_015001	exon11	c.T2131C	p.S711P	TTTGAGTCTGACC	.	113.0	5.0	130.0	0.0	.	374	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16255354	16255354	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPEN	NM_015001	exon11	c.A2619G	p.E873E	CCTGGAACTCATG	.	91.0	4.0	104.0	0.0	.	374	.	.	Atlas-SNP
PADI2	11240	hgsc.bcm.edu	hg19	1	17402249	17402249	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PADI2	NM_007365	exon12	c.G1380A	p.V460V	GAGCTCCACGGGC	.	101.0	5.0	132.0	0.0	.	72	.	.	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	hg19	1	18809370	18809370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHDC7A	NM_152375	exon1	c.G1895A	p.R632H	CGGTGCGTGCCAA	.	26.0	13.0	47.0	0.0	.	60	.	.	Atlas-SNP
ALDH4A1	8659	hgsc.bcm.edu	hg19	1	19212052	19212052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH4A1	NM_003748	exon5	c.A368G	p.D123G	GCCCGGTCTGCAA	.	50.0	4.0	64.0	0.0	.	72	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22181466	22181466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HSPG2	NM_005529	exon48	c.A6008G	p.E2003G	GTGCGCTCTGACC	.	139.0	6.0	161.0	0.0	.	311	.	.	Atlas-SNP
EPHA8	2046	hgsc.bcm.edu	hg19	1	22927919	22927919	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	EPHA8,NS,carcinoma,0,1	EPHA8	NM_020526	exon16	c.T2856C	p.A952A	CTTCGCTGCGGGC	.	36.0	4.0	42.0	0.0	.	221	.	.	Atlas-SNP
RPL11	6135	hgsc.bcm.edu	hg19	1	24022368	24022368	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL11	NM_000975	exon5	c.A477G	p.K159K	CAGCAAAGAGGAG	.	74.0	4.0	119.0	0.0	.	21	.	.	Atlas-SNP
MYOM3	127294	hgsc.bcm.edu	hg19	1	24406666	24406666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	MYOM3,colon,carcinoma,0,1	MYOM3	NM_152372	exon20	c.G2426T	p.R809L	GATGCCCGTACAT	.	49.0	3.0	65.0	0.0	.	131	.	.	Atlas-SNP
IL22RA1	58985	hgsc.bcm.edu	hg19	1	24460747	24460747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL22RA1	NM_021258	exon4	c.A485G	p.D162G	AACAGGTCATGGA	.	85.0	4.0	147.0	0.0	.	62	.	.	Atlas-SNP
IL22RA1	58985	hgsc.bcm.edu	hg19	1	24463631	24463631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL22RA1	NM_021258	exon3	c.T345C	p.S115S	CTGCAGAGAGCTG	.	49.0	4.0	61.0	0.0	.	62	.	.	Atlas-SNP
AUNIP	79000	hgsc.bcm.edu	hg19	1	26162302	26162302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AUNIP	NM_024037	exon3	c.T256C	p.S86P	TATGAGATGAAAC	.	96.0	4.0	139.0	0.0	.	1	.	.	Atlas-SNP
NUDC	10726	hgsc.bcm.edu	hg19	1	27269479	27269479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDC	NM_006600	exon6	c.C664A	p.L222I	GGGGAGCTCTACA	.	72.0	4.0	110.0	0.0	.	15	.	.	Atlas-SNP
FCN3	8547	hgsc.bcm.edu	hg19	1	27697419	27697419	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FCN3	NM_003665	exon6	c.T438C	p.S146S	GGACCAAGAGCGG	.	95.0	5.0	118.0	0.0	.	30	.	.	Atlas-SNP
OPRD1	4985	hgsc.bcm.edu	hg19	1	29185650	29185650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OPRD1	NM_000911	exon2	c.A412G	p.T138A	ATCTTCACGCTCA	.	89.0	4.0	115.0	0.0	.	36	.	.	Atlas-SNP
HDAC1	3065	hgsc.bcm.edu	hg19	1	32797350	32797350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	HDAC1,NS,carcinoma,0,1	HDAC1	NM_004964	exon11	c.G1162A	p.A388T	GAGGACGCCATCC	.	70.0	4.0	87.0	0.0	.	43	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35884071	35884071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ZMYM4,rectum,carcinoma,0,2	ZMYM4	NM_005095	exon29	c.G4337T	p.R1446L	GGAAACGAAATGA	.	97.0	4.0	123.0	0.0	.	143	.	.	Atlas-SNP
KIAA0319L	79932	hgsc.bcm.edu	hg19	1	35972224	35972224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0319L	NM_024874	exon3	c.G655A	p.G219S	CAGAGCCACTGGT	.	123.0	5.0	184.0	0.0	.	156	.	.	Atlas-SNP
RHBDL2	54933	hgsc.bcm.edu	hg19	1	39381373	39381373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RHBDL2	NM_017821	exon3	c.T256C	p.F86L	AAATAAACACTGC	.	84.0	5.0	134.0	0.0	.	28	.	.	Atlas-SNP
BMP8A	353500	hgsc.bcm.edu	hg19	1	39991422	39991422	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BMP8A	NM_181809	exon7	c.C1161A	p.I387I	CGTCATCCTGCGC	.	85.0	5.0	99.0	0.0	.	24	.	.	Atlas-SNP
ZFP69	339559	hgsc.bcm.edu	hg19	1	40961674	40961674	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_198494	exon6	c.T1524C	p.S508S	TAACTCTTCACTT	.	96.0	4.0	123.0	0.0	.	.	.	.	Atlas-SNP
SCMH1	22955	hgsc.bcm.edu	hg19	1	41579042	41579042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCMH1	NM_001172219	exon8	c.T658C	p.Y220H	ACCAGTAGTCAAA	.	54.0	4.0	88.0	0.0	.	120	.	.	Atlas-SNP
PPIH	10465	hgsc.bcm.edu	hg19	1	43133074	43133074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPIH	NM_006347	exon9	c.A518G	p.Q173R	TCTCGCAGTGTGG	.	82.0	4.0	86.0	0.0	.	15	.	.	Atlas-SNP
LEPRE1	64175	hgsc.bcm.edu	hg19	1	43224582	43224582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LEPRE1	NM_001146289	exon4	c.A881G	p.K294R	AAGGGCTTCTCTC	.	70.0	4.0	102.0	0.0	.	130	.	.	Atlas-SNP
CCDC24	149473	hgsc.bcm.edu	hg19	1	44461509	44461509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC24	NM_152499	exon8	c.T682C	p.C228R	CCTTCTTGTGTCT	.	86.0	4.0	116.0	0.0	.	22	.	.	Atlas-SNP
HECTD3	79654	hgsc.bcm.edu	hg19	1	45469234	45469234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HECTD3	NM_024602	exon21	c.A2516G	p.E839G	TTCTCCTCGCATA	.	109.0	5.0	146.0	0.0	.	158	.	.	Atlas-SNP
CCDC17	149483	hgsc.bcm.edu	hg19	1	46086573	46086573	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC17	NM_001114938	exon12	c.1599+2T>C	.	ACACTCACCTGAG	.	88.0	4.0	118.0	0.0	.	54	.	.	Atlas-SNP
CMPK1	51727	hgsc.bcm.edu	hg19	1	47840605	47840605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CMPK1	NM_016308	exon4	c.A496G	p.R166G	CTTGAGAGGGGAA	.	91.0	4.0	135.0	0.0	.	13	.	.	Atlas-SNP
FAF1	11124	hgsc.bcm.edu	hg19	1	50941209	50941209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAF1	NM_007051	exon18	c.T1796C	p.V599A	TCAAAGACAATCT	.	97.0	4.0	115.0	0.0	.	64	.	.	Atlas-SNP
CYB5RL	606495	hgsc.bcm.edu	hg19	1	54640392	54640392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CYB5RL	NM_001031672	exon8	c.A848G	p.K283R	AATGGCTTTCTCC	.	41.0	4.0	62.0	0.0	.	17	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55139780	55139780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001039464	exon10	c.T1892C	p.L631P	AGGCTCTGGACGG	.	147.0	6.0	172.0	0.0	.	.	.	.	Atlas-SNP
BSND	7809	hgsc.bcm.edu	hg19	1	55473990	55473990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BSND	NM_057176	exon4	c.A652G	p.R218G	CATGACAGGGAGG	.	90.0	4.0	99.0	0.0	.	36	.	.	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	hg19	1	62739084	62739084	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KANK4	NM_181712	exon3	c.G1692T	p.V564V	CTTCTTCACATAC	.	151.0	22.0	251.0	0.0	.	135	.	.	Atlas-SNP
USP1	7398	hgsc.bcm.edu	hg19	1	62910512	62910512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	USP1	NM_001017415	exon6	c.G661A	p.E221K	AAAAAAGAAGAAG	.	125.0	13.0	171.0	0.0	.	51	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	62995054	62995054	+	Silent	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DOCK7	NM_001271999	exon30	c.A3675C	p.S1225S	CGGGTCTGAGTCG	.	119.0	12.0	161.0	0.0	.	184	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65307245	65307245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK1	NM_002227	exon18	c.C2443T	p.P815S	ATGATGGTGTCAC	.	147.0	45.0	177.0	0.0	.	209	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65335078	65335078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	JAK1	NM_002227	exon6	c.A563G	p.E188G	AGACACTCGTTCT	.	87.0	4.0	149.0	0.0	.	209	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75037860	75037860	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	C1orf173,NS,carcinoma,0,1	C1orf173	NM_001002912	exon14	c.A3534G	p.G1178G	TTCCCCTCCTCCT	.	146.0	6.0	199.0	0.0	.	380	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79385900	79385900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ELTD1	NM_022159	exon10	c.T1429C	p.F477L	CAAGAAAAACAAG	.	75.0	4.0	91.0	0.0	.	143	.	.	Atlas-SNP
ALG14	199857	hgsc.bcm.edu	hg19	1	95448692	95448692	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALG14	NM_144988	exon4	c.T591C	p.V197V	CCACTGAACAATG	.	100.0	4.0	162.0	0.0	.	13	.	.	Atlas-SNP
AKNAD1	254268	hgsc.bcm.edu	hg19	1	109394791	109394791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKNAD1	NM_152763	exon2	c.C496T	p.P166S	GTTCTGGGGTTTG	.	294.0	14.0	412.0	0.0	.	83	.	.	Atlas-SNP
KIAA1324	57535	hgsc.bcm.edu	hg19	1	109716107	109716107	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1324	NM_020775	exon6	c.T708C	p.N236N	GCTAAATCGAGGC	.	91.0	4.0	107.0	0.0	.	77	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109805547	109805547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CELSR2	NM_001408	exon7	c.A4664G	p.H1555R	GCCGGCACATAGA	.	94.0	4.0	111.0	0.0	.	228	.	.	Atlas-SNP
RSBN1	54665	hgsc.bcm.edu	hg19	1	114309729	114309729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RSBN1	NM_018364	exon6	c.G1927A	p.V643I	GGGAAACTGGAGG	.	90.0	4.0	137.0	0.0	.	71	.	.	Atlas-SNP
CD101	9398	hgsc.bcm.edu	hg19	1	117552527	117552527	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CD101	NM_001256109	exon2	c.A99G	p.R33R	GTTTAGAGCTGAA	.	84.0	4.0	113.0	0.0	.	95	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118727720	118727720	+	Missense_Mutation	SNP	A	A	G	rs139383446	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPAG17	NM_206996	exon1	c.T61C	p.S21P	TGAGCGAGGGTTC	.	97.0	4.0	152.0	0.0	.	263	.	A|0.999;C|0.001	Atlas-SNP
HMGCS2	3158	hgsc.bcm.edu	hg19	1	120295968	120295968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HMGCS2	NM_005518	exon7	c.T1229C	p.F410S	TAAGAGAAGGCAC	.	97.0	4.0	144.0	0.0	.	58	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367777	145367777	+	Missense_Mutation	SNP	G	G	T	rs200743139	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	NBPF10,NS,carcinoma,0,1	NBPF10	NM_001039703	exon83	c.G10373T	p.R3458M	GAAGAAGGGGAAG	.	13.0	6.0	8.0	2.0	.	221	.	.	Atlas-SNP
TDRKH	11022	hgsc.bcm.edu	hg19	1	151751633	151751633	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TDRKH	NM_001083965	exon5	c.A507G	p.L169L	TGATAGTAGTAAT	.	506.0	76.0	399.0	0.0	.	45	.	.	Atlas-SNP
UBE2Q1	55585	hgsc.bcm.edu	hg19	1	154524627	154524627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UBE2Q1	NM_017582	exon8	c.T908C	p.L303P	ATCTGGAGATCGT	.	150.0	6.0	104.0	0.0	.	35	.	.	Atlas-SNP
GPATCH4	54865	hgsc.bcm.edu	hg19	1	156565051	156565051	+	Missense_Mutation	SNP	G	G	C	rs75463812	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPATCH4	NM_015590	exon8	c.C1082G	p.T361S	CTAAAAGTTTCCT	.	692.0	29.0	543.0	0.0	.	34	.	C|1.000;|0.000	Atlas-SNP
CASQ1	844	hgsc.bcm.edu	hg19	1	160160793	160160793	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASQ1	NM_001231	exon1	c.A252G	p.Q84Q	AAGACAATTTGAG	.	109.0	5.0	88.0	0.0	.	55	.	.	Atlas-SNP
ARHGAP30	257106	hgsc.bcm.edu	hg19	1	161019075	161019075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP30	NM_001025598	exon12	c.A1736G	p.E579G	TGTGCCTCATCCA	.	108.0	5.0	68.0	0.0	.	105	.	.	Atlas-SNP
NOS1AP	9722	hgsc.bcm.edu	hg19	1	162335312	162335312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NOS1AP	NM_014697	exon9	c.T1058C	p.V353A	TGCTGGTCAAGCA	.	85.0	4.0	68.0	0.0	.	139	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169510014	169510014	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	F5	NM_000130	exon13	c.C4314T	p.L1438L	TGGAGAGAGAGTC	.	215.0	9.0	161.0	0.0	.	301	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175375825	175375825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TNR	NM_003285	exon3	c.T26C	p.V9A	TTCAGAACCACTG	.	171.0	7.0	122.0	0.0	.	399	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204937944	204937944	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFASC	NM_015090	exon10	c.A870G	p.A290A	CATCGCATGGTAC	.	100.0	4.0	87.0	0.0	.	396	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209788716	209788716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMB3	NM_000228	exon23	c.T3419C	p.I1140T	AGCATGATGGCCT	.	98.0	4.0	75.0	0.0	.	136	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209799289	209799289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	LAMB3,bladder,carcinoma,0,1	LAMB3	NM_000228	exon14	c.C1680T	p.T560T	GGGCCCGGTCAAG	.	77.0	4.0	30.0	0.0	.	136	.	.	Atlas-SNP
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213415488	213415488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS6KC1	NM_012424	exon11	c.A2669G	p.D890G	ACCTTGATAAAAA	.	124.0	5.0	132.0	0.0	.	114	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225328438	225328438	+	Missense_Mutation	SNP	G	G	T	rs202118490		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAH14	NM_001373	exon27	c.G4172T	p.R1391I	GAGAGAGATATAT	.	28.0	13.0	21.0	0.0	.	300	.	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232650005	232650005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIPA1L2	NM_020808	exon1	c.G1081T	p.A361S	CAGATGCCCCAGT	.	70.0	48.0	61.0	0.0	.	218	.	.	Atlas-SNP
SH3BP5L	80851	hgsc.bcm.edu	hg19	1	249106273	249106273	+	Silent	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SH3BP5L	NM_030645	exon7	c.G1008C	p.L336L	CAGGCTCAGCAGA	.	83.0	12.0	63.0	0.0	.	47	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1664712	1664712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PXDN	NM_012293	exon14	c.A1778G	p.E593G	ACACACTCATAGC	.	75.0	4.0	78.0	0.0	.	255	.	.	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9531316	9531316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASAP2	NM_003887	exon23	c.A2509G	p.T837A	CGCGTGACATCTA	.	99.0	4.0	113.0	0.0	.	91	.	.	Atlas-SNP
KLF11	8462	hgsc.bcm.edu	hg19	2	10188645	10188645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLF11	NM_003597	exon3	c.A1181G	p.Y394C	GGAACTATGTATG	.	78.0	4.0	81.0	0.0	.	45	.	.	Atlas-SNP
PDIA6	10130	hgsc.bcm.edu	hg19	2	10925108	10925108	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDIA6	NM_005742	exon12	c.T1206C	p.A402A	AGGGAAAGCCCCG	.	79.0	4.0	88.0	0.0	.	31	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11772120	11772120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GREB1	NM_014668	exon27	c.A4697G	p.D1566G	CAATGGACGGTGC	.	146.0	6.0	187.0	0.0	.	308	.	.	Atlas-SNP
DDX1	1653	hgsc.bcm.edu	hg19	2	15746378	15746378	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DDX1	NM_004939	exon12	c.A807G	p.S269S	CAAATCACAGCAC	.	149.0	6.0	158.0	0.0	.	70	.	.	Atlas-SNP
SMC6	79677	hgsc.bcm.edu	hg19	2	17922879	17922879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMC6	NM_001142286	exon4	c.A238G	p.S80G	ACTTACTTCCATT	.	60.0	4.0	79.0	0.0	.	102	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	25965337	25965337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ASXL2	NM_018263	exon12	c.G3869C	p.S1290T	GTAGAACTGAAAA	.	138.0	10.0	187.0	0.0	.	217	.	.	Atlas-SNP
CGREF1	10669	hgsc.bcm.edu	hg19	2	27325406	27325406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CGREF1	NM_001166239	exon3	c.A134G	p.Q45R	TGCTCCTGGCCTG	.	74.0	4.0	68.0	0.0	.	31	.	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27458485	27458485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAD	NM_004341	exon25	c.T4051C	p.F1351L	GCTGACTTCTACA	.	112.0	6.0	107.0	0.0	.	199	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27802654	27802654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.T3215C	p.L1072P	ATTATCTTTCCCA	.	108.0	5.0	142.0	0.0	.	357	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27803186	27803186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2orf16	NM_032266	exon1	c.A3747G	p.R1249R	AACTAGAGCACCT	.	116.0	5.0	161.0	0.0	.	357	.	.	Atlas-SNP
CCDC121	79635	hgsc.bcm.edu	hg19	2	27851424	27851424	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC121	NM_001142683	exon1	c.C207T	p.P69P	CTCAAAGGGTCTC	.	123.0	5.0	153.0	0.0	.	43	.	.	Atlas-SNP
RBKS	64080	hgsc.bcm.edu	hg19	2	28004570	28004570	+	Missense_Mutation	SNP	G	G	T	rs200310841	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RBKS	NM_022128	exon8	c.C881A	p.S294Y	AAATTGGATCTGT	.	83.0	4.0	146.0	0.0	.	23	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31604573	31604573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XDH	NM_000379	exon12	c.T1058C	p.I353T	GCAGTGATGATGT	.	92.0	4.0	105.0	0.0	.	191	.	.	Atlas-SNP
SLC30A6	55676	hgsc.bcm.edu	hg19	2	32399138	32399138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC30A6	NM_001193513	exon3	c.A97G	p.K33E	TCCTGGAAGATAC	.	271.0	103.0	367.0	0.0	.	37	.	.	Atlas-SNP
STRN	6801	hgsc.bcm.edu	hg19	2	37094974	37094974	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	STRN,extremity,malignant_melanoma,0,1	STRN	NM_003162	exon12	c.T1530A	p.Y510X	GAATGTATAGATA	.	65.0	3.0	91.0	0.0	.	71	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	51254792	51254792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NRXN1	NM_004801	exon2	c.A620G	p.E207G	GGCGGCTCATCGT	.	114.0	5.0	119.0	0.0	.	1118	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54753654	54753654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTBN1	NM_003128	exon2	c.G99T	p.E33D	CAATGAGAACAGC	.	95.0	4.0	103.0	0.0	.	378	.	.	Atlas-SNP
EHBP1	23301	hgsc.bcm.edu	hg19	2	63086387	63086387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EHBP1	NM_015252	exon9	c.G823A	p.A275T	CCTGATGCTGCAG	.	80.0	4.0	128.0	0.0	.	127	.	.	Atlas-SNP
SERTAD2	9792	hgsc.bcm.edu	hg19	2	64863856	64863856	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERTAD2	NM_014755	exon2	c.C150T	p.N50N	CCTGTGGTTATAG	.	220.0	21.0	237.0	0.0	.	32	.	.	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	hg19	2	69741753	69741753	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AAK1	NM_014911	exon13	c.G1626A	p.Q542Q	CTGTTGCTGTTGT	.	134.0	14.0	147.0	0.0	.	121	.	.	Atlas-SNP
VAX2	25806	hgsc.bcm.edu	hg19	2	71148294	71148294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VAX2	NM_012476	exon2	c.C314T	p.T105I	AGCGGACACGTAC	.	95.0	4.0	144.0	0.0	.	27	.	.	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	hg19	2	86705806	86705806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM3A	NM_001146688	exon15	c.A2264G	p.N755S	GTTCAAACAGGCA	.	87.0	4.0	132.0	0.0	.	179	.	.	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	hg19	2	95940507	95940507	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PROM2	NM_001165977	exon1	c.A174G	p.G58G	GCCAGGACTCCTG	.	78.0	4.0	99.0	0.0	.	78	.	.	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96965077	96965077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNRNP200	NM_014014	exon6	c.T719C	p.L240P	GCCGAGAGGGTGC	.	100.0	5.0	119.0	0.0	.	195	.	.	Atlas-SNP
ARID5A	10865	hgsc.bcm.edu	hg19	2	97216921	97216921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARID5A	NM_212481	exon7	c.A656G	p.Q219R	AACAGCAGGGCCT	.	93.0	4.0	122.0	0.0	.	31	.	.	Atlas-SNP
CLASP1	23332	hgsc.bcm.edu	hg19	2	122205082	122205082	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLASP1	NM_001207051	exon19	c.T1743C	p.A581A	TGTAGAAGCTTTA	.	83.0	4.0	109.0	0.0	.	135	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125367485	125367485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNTNAP5	NM_130773	exon12	c.T1861C	p.C621R	GTGTACTGCAATA	.	42.0	4.0	71.0	0.0	.	405	.	.	Atlas-SNP
GPR148	344561	hgsc.bcm.edu	hg19	2	131486858	131486858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR148	NM_207364	exon1	c.C134T	p.P45L	GGGTGCCCAGCTC	.	93.0	4.0	103.0	0.0	.	54	.	.	Atlas-SNP
THSD7B	80731	hgsc.bcm.edu	hg19	2	138373887	138373887	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	THSD7B	NM_001080427	exon17	c.3477+1G>A	.	TAACAGGTACAGT	.	98.0	4.0	103.0	0.0	.	506	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141707824	141707824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRP1B	NM_018557	exon20	c.A3116G	p.Q1039R	TTGATCTGGGCTT	.	124.0	5.0	133.0	0.0	.	1315	.	.	Atlas-SNP
ZEB2	9839	hgsc.bcm.edu	hg19	2	145162558	145162558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZEB2	NM_014795	exon5	c.A437G	p.E146G	AAGTATTCCTCAA	.	95.0	4.0	95.0	0.0	.	218	.	.	Atlas-SNP
RIF1	55183	hgsc.bcm.edu	hg19	2	152316610	152316610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIF1	NM_018151	exon26	c.G3052A	p.E1018K	AAAAAAGAAAATA	.	186.0	21.0	137.0	0.0	.	244	.	.	Atlas-SNP
ACVR1	90	hgsc.bcm.edu	hg19	2	158636913	158636913	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACVR1	NM_001105	exon4	c.A267G	p.Q89Q	CACGGCTTGGCCA	.	86.0	4.0	102.0	0.0	.	52	.	.	Atlas-SNP
FIGN	55137	hgsc.bcm.edu	hg19	2	164467712	164467712	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIGN	NM_018086	exon3	c.T630C	p.H210H	AGACGGATGAGGT	.	167.0	7.0	198.0	0.0	.	106	.	.	Atlas-SNP
SP3	6670	hgsc.bcm.edu	hg19	2	174820457	174820457	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SP3	NM_003111	exon4	c.A783G	p.P261P	ATTTCCTGGCAGA	.	71.0	4.0	90.0	0.0	.	82	.	.	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	hg19	2	178494173	178494173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDE11A	NM_016953	exon20	c.C2764T	p.P922S	TGGCAGGGGAGGA	.	254.0	13.0	268.0	0.0	.	283	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179667053	179667053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTN	NM_001267550	exon3	c.A107G	p.E36G	CTCACCTCAGGAA	.	120.0	5.0	146.0	0.0	.	18412	.	.	Atlas-SNP
RFTN2	130132	hgsc.bcm.edu	hg19	2	198480674	198480674	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RFTN2	NM_144629	exon7	c.T1080C	p.P360P	CAGCAGAGGGCCA	.	98.0	4.0	108.0	0.0	.	68	.	.	Atlas-SNP
FASTKD2	22868	hgsc.bcm.edu	hg19	2	207652780	207652780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FASTKD2	NM_001136193	exon9	c.T1714C	p.S572P	CCATCGTCACATA	.	66.0	4.0	95.0	0.0	.	49	.	.	Atlas-SNP
MAP2	4133	hgsc.bcm.edu	hg19	2	210558428	210558428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAP2	NM_002374	exon7	c.A1534G	p.M512V	TCAGCCATGACCT	.	76.0	4.0	107.0	0.0	.	372	.	.	Atlas-SNP
RQCD1	9125	hgsc.bcm.edu	hg19	2	219447748	219447748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RQCD1	NM_001271634	exon3	c.T259C	p.S87P	CACCAGTCTAACA	.	95.0	4.0	130.0	0.0	.	32	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220432976	220432976	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	OBSL1_ENST00000404537,NS,carcinoma,0,1	OBSL1	NM_001173431	exon2	c.A1083G	p.E361E	TTTACATTCCAGC	.	40.0	2.0	88.0	1.0	.	120	.	.	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	hg19	2	220470738	220470738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STK11IP	NM_052902	exon9	c.A839G	p.H280R	AAGGACACCGGGA	.	116.0	5.0	172.0	0.0	.	152	.	.	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	hg19	2	228162401	228162401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COL4A3	NM_000091	exon42	c.G3577T	p.D1193Y	AAAGGAGACAGGG	.	95.0	4.0	144.0	0.0	.	293	.	.	Atlas-SNP
HTR2B	3357	hgsc.bcm.edu	hg19	2	231973880	231973880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HTR2B	NM_000867	exon4	c.C797T	p.T266I	AAAACTGTAGACA	.	147.0	57.0	248.0	0.0	.	33	.	.	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232325390	232325390	+	Silent	SNP	C	C	T	rs371798454		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NCL	NM_005381	exon4	c.G801A	p.E267E	CTCCTCCTCTTCT	.	208.0	17.0	318.0	0.0	.	80	.	.	Atlas-SNP
TRPM8	79054	hgsc.bcm.edu	hg19	2	234854669	234854669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TRPM8,NS,carcinoma,0,1	TRPM8	NM_024080	exon7	c.T869C	p.I290T	GCACTATTCAAGG	.	77.0	4.0	95.0	0.0	.	146	.	.	Atlas-SNP
CXCR7	57007	hgsc.bcm.edu	hg19	2	237489664	237489664	+	Missense_Mutation	SNP	G	G	T	rs143561143	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CXCR7_ENST00000272928,caecum,carcinoma,0,2	CXCR7	NM_020311	exon2	c.G556T	p.V186F	AAGACCGTCACGT	.	89.0	4.0	85.0	0.0	.	72	.	G|0.999;A|0.001	Atlas-SNP
SEPT2	4735	hgsc.bcm.edu	hg19	2	242287583	242287583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPT2	NM_001008491	exon12	c.A961G	p.I321V	GACCAGATCTTGC	.	100.0	4.0	160.0	0.0	.	33	.	.	Atlas-SNP
SSUH2	51066	hgsc.bcm.edu	hg19	3	8669446	8669446	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001256748	exon8	c.A612G	p.G204G	CTTGGCTCCGCAG	.	132.0	7.0	138.0	0.0	.	.	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9146431	9146431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SRGAP3	NM_014850	exon3	c.T356C	p.I119T	ATGAAGATGTCAT	.	99.0	4.0	110.0	0.0	.	146	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12854590	12854590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAND2	NM_001162499	exon6	c.A859G	p.R287G	TTCTTGAGGAAGT	.	90.0	4.0	116.0	0.0	.	138	.	.	Atlas-SNP
TOP2B	7155	hgsc.bcm.edu	hg19	3	25654010	25654010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TOP2B	NM_001068	exon28	c.A3767G	p.K1256R	ACCTTCTTCTTCT	.	102.0	5.0	90.0	0.0	.	98	.	.	Atlas-SNP
LRRC3B	116135	hgsc.bcm.edu	hg19	3	26751506	26751506	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC3B	NM_052953	exon2	c.T343C	p.L115L	GAAACCTTGCAGA	.	81.0	4.0	76.0	0.0	.	51	.	.	Atlas-SNP
LRRC3B	116135	hgsc.bcm.edu	hg19	3	26751740	26751740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC3B	NM_052953	exon2	c.G577T	p.D193Y	GACGCTGACCTTT	.	146.0	10.0	197.0	0.0	.	51	.	.	Atlas-SNP
ZNF860	344787	hgsc.bcm.edu	hg19	3	32030625	32030625	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF860	NM_001137674	exon2	c.T54C	p.A18A	CATGGCTCTTCCT	.	124.0	5.0	206.0	0.0	.	96	.	.	Atlas-SNP
ZNF860	344787	hgsc.bcm.edu	hg19	3	32032133	32032133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF860	NM_001137674	exon2	c.A1562G	p.Q521R	TTAATCAACAAGC	.	107.0	5.0	141.0	0.0	.	96	.	.	Atlas-SNP
XYLB	9942	hgsc.bcm.edu	hg19	3	38442465	38442465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XYLB	NM_005108	exon18	c.G1522A	p.G508R	AGCCCGGGAGCTT	.	98.0	4.0	134.0	0.0	.	50	.	.	Atlas-SNP
EXOG	9941	hgsc.bcm.edu	hg19	3	38539163	38539163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXOG	NM_005107	exon2	c.A207T	p.L69F	CCCTTTAACTGGA	.	81.0	5.0	115.0	0.0	.	29	.	.	Atlas-SNP
EXOG	9941	hgsc.bcm.edu	hg19	3	38539164	38539164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXOG	NM_005107	exon2	c.A208T	p.T70S	CCTTTAACTGGAA	.	81.0	4.0	117.0	0.0	.	29	.	.	Atlas-SNP
RPSA	3921	hgsc.bcm.edu	hg19	3	39453157	39453157	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPSA	NM_001012321	exon4	c.T516C	p.G172G	AGTGGGTTTGATG	.	83.0	4.0	112.0	0.0	.	15	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CTNNB1,gallbladder,other,0,161	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	209.0	13.0	260.0	1.0	.	4904	.	.	Atlas-SNP
LRRC2	79442	hgsc.bcm.edu	hg19	3	46569020	46569020	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC2	NM_024512	exon7	c.T825C	p.L275L	ATAGGGAAGGTAG	.	100.0	4.0	99.0	0.0	.	37	.	.	Atlas-SNP
ALS2CL	259173	hgsc.bcm.edu	hg19	3	46722798	46722798	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALS2CL	NM_001190707	exon13	c.G1374A	p.R458R	CGTGTACCTGAAG	.	152.0	53.0	211.0	0.0	.	78	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47043918	47043918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NBEAL2	NM_015175	exon32	c.A5209T	p.M1737L	GACCTTATGTCAG	.	91.0	26.0	92.0	0.0	.	267	.	.	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	hg19	3	47454662	47454662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPN23	NM_015466	exon25	c.T4898C	p.L1633P	GGACACTCAACAA	.	87.0	4.0	94.0	0.0	.	85	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49162306	49162306	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMB2	NM_002292	exon21	c.A2937G	p.P979P	GCCACCTGGCCTT	.	43.0	4.0	54.0	0.0	.	156	.	.	Atlas-SNP
GNAT1	2779	hgsc.bcm.edu	hg19	3	50231568	50231568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNAT1	NM_144499	exon6	c.A622G	p.I208V	AAGTGGATCCACT	.	88.0	4.0	91.0	0.0	.	39	.	.	Atlas-SNP
SLC38A3	10991	hgsc.bcm.edu	hg19	3	50251833	50251833	+	Splice_Site	SNP	A	A	G	rs201228948		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC38A3	NM_006841	exon3	c.102-1A>G	.	GCCTACAGGTCGA	.	61.0	5.0	68.0	0.0	.	22	.	.	Atlas-SNP
ZMYND10	51364	hgsc.bcm.edu	hg19	3	50380447	50380447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZMYND10	NM_015896	exon7	c.T602C	p.L201P	AGAGAGAGGCTAG	.	143.0	6.0	172.0	0.0	.	37	.	.	Atlas-SNP
TLR9	54106	hgsc.bcm.edu	hg19	3	52257674	52257674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TLR9	NM_017442	exon2	c.T658C	p.S220P	GGCTGGAAGGCAG	.	87.0	4.0	113.0	0.0	.	72	.	.	Atlas-SNP
RFT1	91869	hgsc.bcm.edu	hg19	3	53126534	53126534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RFT1	NM_052859	exon12	c.T1309C	p.F437L	TGTTAAAGCAGTT	.	83.0	4.0	78.0	0.0	.	34	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64524966	64524966	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADAMTS9	NM_182920	exon37	c.T5526C	p.T1842T	TAAGTCAGTGGCT	.	88.0	5.0	105.0	0.0	.	206	.	.	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	hg19	3	65342529	65342529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAGI1	NM_001033057	exon23	c.A3913G	p.R1305G	CGTCCCTCCGTCC	.	161.0	11.0	146.0	0.0	.	481	.	.	Atlas-SNP
IQCB1	9657	hgsc.bcm.edu	hg19	3	121527778	121527778	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IQCB1	NM_001023570	exon6	c.G472T	p.E158X	TAAGTTCAACATG	.	271.0	103.0	240.0	0.0	.	50	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124724182	124724182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEG1	NM_020733	exon9	c.A3224G	p.K1075R	GTTCTCTTTAATT	.	58.0	4.0	88.0	0.0	.	109	.	.	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	hg19	3	126152005	126152005	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC37	NM_182628	exon14	c.A1380G	p.K460K	GCTCAAAGCCCGA	.	100.0	4.0	113.0	0.0	.	69	.	.	Atlas-SNP
COPG1	22820	hgsc.bcm.edu	hg19	3	128984637	128984637	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_016128	exon14	c.1468+2T>C	.	GGCAGGTAGGTCT	.	96.0	4.0	123.0	0.0	.	.	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130174346	130174346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COL6A5	NM_153264	exon37	c.T6626C	p.I2209T	GCTTCATTGGCCA	.	277.0	38.0	301.0	0.0	.	205	.	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132172158	132172158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAJC13	NM_015268	exon7	c.A554G	p.E185G	CGTCAGAGCAAAG	.	118.0	5.0	119.0	0.0	.	253	.	.	Atlas-SNP
CEP63	80254	hgsc.bcm.edu	hg19	3	134270790	134270790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEP63	NM_025180	exon13	c.C1403T	p.S468L	TGGAGTCACTCAA	.	93.0	4.0	83.0	0.0	.	56	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142226796	142226796	+	Missense_Mutation	SNP	G	G	T	rs139135398	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon28	c.C5008A	p.Q1670K	GTTCCTGAATATT	.	92.0	4.0	111.0	0.0	.	285	.	G|1.000;C|0.000	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142226823	142226823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon28	c.T4981C	p.F1661L	TAATAAATGATTC	.	114.0	5.0	139.0	0.0	.	285	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142272231	142272231	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATR	NM_001184	exon13	c.A2643G	p.K881K	ATCTCCTTTTGCG	.	97.0	4.0	112.0	0.0	.	285	.	.	Atlas-SNP
AADAC	13	hgsc.bcm.edu	hg19	3	151545789	151545789	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AADAC	NM_001086	exon5	c.T1029C	p.D343D	ATATGATCTCTTA	.	98.0	4.0	164.0	0.0	.	49	.	.	Atlas-SNP
DHX36	170506	hgsc.bcm.edu	hg19	3	153998561	153998561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHX36	NM_020865	exon21	c.A2467G	p.I823V	AATTTATATTAGA	.	88.0	4.0	109.0	0.0	.	98	.	.	Atlas-SNP
GMPS	8833	hgsc.bcm.edu	hg19	3	155629067	155629067	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GMPS	NM_003875	exon7	c.A885G	p.K295K	GGTCAAAGGTATT	.	89.0	4.0	117.0	0.0	.	70	.	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	hg19	3	164906629	164906629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLITRK3	NM_014926	exon2	c.T1990C	p.F664L	AGAAAAACAGAAC	.	98.0	4.0	109.0	0.0	.	263	.	.	Atlas-SNP
TBCCD1	55171	hgsc.bcm.edu	hg19	3	186272765	186272765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBCCD1	NM_001134415	exon5	c.G968A	p.S323N	TCTGAGCTCTTAG	.	156.0	12.0	171.0	0.0	.	42	.	.	Atlas-SNP
IL1RAP	3556	hgsc.bcm.edu	hg19	3	190366343	190366343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL1RAP	NM_001167929	exon11	c.T1562C	p.L521P	CGGTGCTCACGGT	.	81.0	4.0	140.0	0.0	.	96	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3227454	3227454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HTT	NM_002111	exon57	c.G7832T	p.S2611I	GCATGAGCTACAA	.	123.0	5.0	136.0	0.0	.	221	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5624634	5624634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EVC2	NM_147127	exon14	c.A2131G	p.R711G	GGCTCCTCTTCTG	.	135.0	7.0	160.0	0.0	.	202	.	.	Atlas-SNP
C1QTNF7	114905	hgsc.bcm.edu	hg19	4	15444246	15444246	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C1QTNF7	NM_001135170	exon3	c.T714C	p.A238A	TGTGGCTTCGGGG	.	90.0	4.0	95.0	0.0	.	36	.	.	Atlas-SNP
SEPSECS	51091	hgsc.bcm.edu	hg19	4	25156728	25156728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEPSECS	NM_016955	exon5	c.T593C	p.L198P	GTACGCAGCTCGT	.	101.0	11.0	109.0	0.0	.	55	.	.	Atlas-SNP
TBC1D19	55296	hgsc.bcm.edu	hg19	4	26755500	26755500	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBC1D19	NM_018317	exon20	c.G1494T	p.L498L	ATCACTGGCTGCA	.	97.0	4.0	113.0	0.0	.	53	.	.	Atlas-SNP
UGDH	7358	hgsc.bcm.edu	hg19	4	39510222	39510222	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UGDH	NM_003359	exon7	c.T870C	p.A290A	ATTCAGAGCCTCA	.	50.0	4.0	84.0	0.0	.	52	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46067446	46067446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRG1	NM_173536	exon4	c.C477T	p.H159H	TATCCAGTGAGCA	.	77.0	4.0	117.0	0.0	.	172	.	.	Atlas-SNP
NPFFR2	10886	hgsc.bcm.edu	hg19	4	73013093	73013093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	NPFFR2,NS,carcinoma,0,1	NPFFR2	NM_004885	exon4	c.T1133C	p.L378P	AGATGCTCCTGAT	.	75.0	3.0	117.0	0.0	.	98	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74274385	74274385	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALB	NM_000477	exon4	c.T345C	p.C115C	CTGCTGTGCAAAA	.	118.0	5.0	212.0	0.0	.	132	.	.	Atlas-SNP
RASSF6	166824	hgsc.bcm.edu	hg19	4	74459214	74459214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RASSF6	NM_201431	exon4	c.T337C	p.S113P	AAGAAGAGAATGG	.	149.0	6.0	191.0	0.0	.	68	.	.	Atlas-SNP
C4orf22	255119	hgsc.bcm.edu	hg19	4	81283933	81283933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C4orf22	NM_152770	exon2	c.T137C	p.V46A	AGTTGGTGGAGCT	.	86.0	4.0	116.0	0.0	.	35	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85731416	85731416	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDFY3	NM_014991	exon14	c.T1969C	p.L657L	CGAGCAAGGATGT	.	47.0	4.0	87.0	0.0	.	314	.	.	Atlas-SNP
MEPE	56955	hgsc.bcm.edu	hg19	4	88766433	88766433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEPE	NM_020203	exon4	c.A413G	p.D138G	TACATGACCAAGA	.	86.0	4.0	182.0	0.0	.	86	.	.	Atlas-SNP
CCDC109B	55013	hgsc.bcm.edu	hg19	4	110580168	110580168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC109B	NM_017918	exon2	c.T101C	p.V34A	TGTAGGTTTTGCG	.	103.0	6.0	182.0	0.0	.	47	.	.	Atlas-SNP
CASP6	839	hgsc.bcm.edu	hg19	4	110612018	110612018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASP6	NM_001226	exon6	c.T631C	p.S211P	CAACAGAGTAACA	.	104.0	5.0	105.0	0.0	.	25	.	.	Atlas-SNP
CCNA2	890	hgsc.bcm.edu	hg19	4	122738818	122738818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCNA2	NM_001237	exon8	c.A1274G	p.N425S	GGTGGGTTGAGGA	.	86.0	4.0	104.0	0.0	.	30	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123210267	123210267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1109	NM_015312	exon52	c.C9308T	p.T3103I	ATCTTACAACTGA	.	113.0	5.0	165.0	0.0	.	424	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126371393	126371393	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAT4	NM_024582	exon9	c.T9222C	p.T3074T	AGCAACTGTTCAC	.	97.0	4.0	135.0	0.0	.	1752	.	.	Atlas-SNP
PHF17	79960	hgsc.bcm.edu	hg19	4	129782996	129782996	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHF17	NM_199320	exon9	c.A1119G	p.K373K	TAGGAAACCCGAG	.	92.0	4.0	167.0	0.0	.	63	.	.	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148802995	148802995	+	Nonsense_Mutation	SNP	G	G	T	rs138388284	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon10	c.G946T	p.G316X	GGGGACGGAGAGG	.	110.0	38.0	187.0	0.0	.	92	.	G|1.000;A|0.000	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148984403	148984403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARHGAP10	NM_024605	exon21	c.C2132A	p.P711H	CGTCCCCTTTCCC	.	131.0	30.0	148.0	0.0	.	92	.	.	Atlas-SNP
FAM160A1	729830	hgsc.bcm.edu	hg19	4	152571430	152571430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM160A1	NM_001109977	exon11	c.C2237T	p.P746L	CCCACCCGGAGAG	.	79.0	4.0	87.0	0.0	.	60	.	.	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	hg19	4	153884235	153884235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FHDC1	NM_033393	exon7	c.A982G	p.T328A	GCAGACACAAAAG	.	68.0	4.0	93.0	0.0	.	102	.	.	Atlas-SNP
TRIM2	23321	hgsc.bcm.edu	hg19	4	154216477	154216477	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TRIM2_ENST00000338700,colon,carcinoma,0,2	TRIM2	NM_015271	exon6	c.C799T	p.Q267X	CAGTCGCAGCTGG	.	49.0	3.0	63.0	0.0	.	105	.	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	hg19	4	185340657	185340657	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IRF2	NM_002199	exon3	c.T153C	p.D51D	TGGTGCATCTTTT	.	74.0	4.0	96.0	0.0	.	53	.	.	Atlas-SNP
TRIML1	339976	hgsc.bcm.edu	hg19	4	189068092	189068092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TRIML1,NS,carcinoma,0,1	TRIML1	NM_178556	exon6	c.G973A	p.D325N	AGATTTGACCAGT	.	109.0	5.0	127.0	0.0	.	126	.	.	Atlas-SNP
EXOC3	11336	hgsc.bcm.edu	hg19	5	466898	466898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXOC3	NM_007277	exon13	c.A2123G	p.K708R	ACATGAAGCAGAC	.	109.0	6.0	147.0	0.0	.	54	.	.	Atlas-SNP
BRD9	65980	hgsc.bcm.edu	hg19	5	864653	864653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BRD9	NM_023924	exon16	c.A1724G	p.Q575R	TCTGGCTGCTCCC	.	63.0	4.0	70.0	0.0	.	113	.	.	Atlas-SNP
LPCAT1	79888	hgsc.bcm.edu	hg19	5	1463792	1463792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPCAT1	NM_024830	exon14	c.A1579G	p.K527E	CAGGCTTCCGCCC	.	90.0	4.0	115.0	0.0	.	70	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5461628	5461628	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0947	NM_015325	exon13	c.A2181G	p.K727K	TACAAAAGTAGTA	.	102.0	5.0	116.0	0.0	.	301	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5461675	5461675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0947	NM_015325	exon13	c.T2228C	p.F743S	CAGTATTTATGAA	.	81.0	4.0	99.0	0.0	.	301	.	.	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	hg19	5	9122917	9122917	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEMA5A	NM_003966	exon14	c.T1632C	p.G544G	CCACACACCAAAG	.	135.0	6.0	158.0	0.0	.	236	.	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	hg19	5	15936656	15936656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBXL7	NM_012304	exon4	c.G837A	p.M279I	GGACATGACGGAC	.	63.0	4.0	62.0	0.0	.	138	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19544066	19544066	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDH18	NM_001167667	exon9	c.T1302C	p.D434D	ATTGGCATCAATG	.	114.0	6.0	169.0	0.0	.	561	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39130699	39130699	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FYB	NM_001243093	exon10	c.A1863G	p.G621G	TCCACTTCCACTC	.	73.0	5.0	72.0	0.0	.	354	.	.	Atlas-SNP
FGF10	2255	hgsc.bcm.edu	hg19	5	44388683	44388683	+	Silent	SNP	A	A	G	rs140279180	bycluster;byfrequency;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGF10	NM_004465	exon1	c.T102C	p.P34P	GGTGACAGGGACG	.	141.0	6.0	128.0	0.0	.	40	.	A|1.000;C|0.000	Atlas-SNP
ADAMTS6	11174	hgsc.bcm.edu	hg19	5	64510631	64510631	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADAMTS6	NM_197941	exon20	c.T2565C	p.T855T	AGCACAAGTAGCT	.	110.0	5.0	119.0	0.0	.	174	.	.	Atlas-SNP
PPWD1	23398	hgsc.bcm.edu	hg19	5	64868003	64868003	+	Missense_Mutation	SNP	T	T	C	rs373825399		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPWD1	NM_015342	exon5	c.T859C	p.C287R	AGCGTATGTTTTT	.	75.0	4.0	84.0	0.0	.	47	.	.	Atlas-SNP
TRIM23	373	hgsc.bcm.edu	hg19	5	64890421	64890421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM23	NM_033228	exon10	c.A1472G	p.H491R	TCGCTGTGTGCTT	.	74.0	4.0	85.0	0.0	.	73	.	.	Atlas-SNP
SV2C	22987	hgsc.bcm.edu	hg19	5	75505685	75505685	+	Missense_Mutation	SNP	A	A	C	rs370314313		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SV2C	NM_014979	exon4	c.A886C	p.M296L	TCTGCCATGGCCT	.	79.0	4.0	106.0	0.0	.	97	.	.	Atlas-SNP
AP3B1	8546	hgsc.bcm.edu	hg19	5	77563357	77563357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP3B1	NM_003664	exon2	c.A191G	p.K64R	ATCCGCTTCATAG	.	88.0	4.0	94.0	0.0	.	94	.	.	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80511700	80511700	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RASGRF2	NM_006909	exon24	c.A3360G	p.K1120K	GACAAAAGCTCTA	.	86.0	4.0	105.0	0.0	.	165	.	.	Atlas-SNP
XRCC4	7518	hgsc.bcm.edu	hg19	5	82499472	82499472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XRCC4	NM_003401	exon5	c.A584G	p.H195R	GTTTGCATAATAA	.	94.0	4.0	92.0	0.0	.	37	.	.	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	hg19	5	96119656	96119656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERAP1	NM_001198541	exon14	c.A2072G	p.D691G	TTCATATCTCTTT	.	89.0	4.0	110.0	0.0	.	59	.	.	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	hg19	5	100222086	100222086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ST8SIA4,colon,carcinoma,0,2	ST8SIA4	NM_175052	exon3	c.A464G	p.E155G	CCACATTCACTGT	.	169.0	7.0	201.0	0.0	.	77	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109190938	109190938	+	Missense_Mutation	SNP	C	C	T	rs200723635		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	MAN2A1,colon,carcinoma,0,1	MAN2A1	NM_002372	exon20	c.C3074T	p.S1025F	AGTTCTCCTCACC	.	26.0	15.0	3.0	0.0	.	136	.	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112927702	112927702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YTHDC2	NM_022828	exon28	c.A4039G	p.R1347G	TTTTCTAGGATGT	.	87.0	4.0	84.0	0.0	.	118	.	.	Atlas-SNP
TIFAB	497189	hgsc.bcm.edu	hg19	5	134785146	134785146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TIFAB	NM_001099221	exon2	c.T484C	p.X162Q	TCTGCTACCCTGA	.	81.0	4.0	90.0	0.0	.	23	.	.	Atlas-SNP
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137271514	137271514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKD2L2	NM_014386	exon13	c.A1700G	p.K567R	TGAAAAAATGGAA	.	92.0	4.0	71.0	0.0	.	68	.	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140180864	140180864	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHA3	NM_031497	exon1	c.A82C	p.S28R	GTGGGGAGCGGCC	.	95.0	4.0	83.0	0.0	.	396	.	.	Atlas-SNP
PCDHA11	56138	hgsc.bcm.edu	hg19	5	140250200	140250200	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCDHA11	NM_018902	exon1	c.G1512A	p.S504S	GCTGTCGAGCTAC	.	142.0	11.0	114.0	0.0	.	209	.	.	Atlas-SNP
PCDHB3	56132	hgsc.bcm.edu	hg19	5	140480645	140480645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	PCDHB3,colon,carcinoma,-1,1	PCDHB3	NM_018937	exon1	c.A412G	p.M138V	AATGAAATGCATC	.	87.0	4.0	65.0	0.0	.	208	.	.	Atlas-SNP
KIF4B	285643	hgsc.bcm.edu	hg19	5	154394167	154394167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF4B	NM_001099293	exon1	c.A748C	p.T250P	AAGAAAACCAAGG	.	269.0	19.0	227.0	0.0	.	307	.	.	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	hg19	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HAVCR1	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	339.0	38.0	8.0	0.0	.	84	.	.	Atlas-SNP
ADRA1B	147	hgsc.bcm.edu	hg19	5	159399016	159399016	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADRA1B	NM_000679	exon2	c.G1080A	p.V360V	TTTCGTGCGCATC	.	89.0	4.0	83.0	0.0	.	39	.	.	Atlas-SNP
HK3	3101	hgsc.bcm.edu	hg19	5	176314004	176314004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HK3	NM_002115	exon13	c.A1856G	p.Q619R	CTCACCTGGTCTA	.	72.0	4.0	52.0	0.0	.	210	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176520392	176520392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGFR4	NM_022963	exon8	c.T1117C	p.S373P	ACCAAGTCTCCCA	.	166.0	7.0	113.0	0.0	.	174	.	.	Atlas-SNP
CDYL	9425	hgsc.bcm.edu	hg19	6	4892284	4892284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDYL	NM_004824	exon2	c.A362G	p.K121R	TCAGGAAGAACAC	.	92.0	4.0	87.0	0.0	.	74	.	.	Atlas-SNP
RIOK1	83732	hgsc.bcm.edu	hg19	6	7393524	7393524	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIOK1	NM_031480	exon2	c.A264G	p.G88G	TGGAGGAAGCAAC	.	141.0	8.0	133.0	0.0	.	36	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7581098	7581098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DSP	NM_004415	exon23	c.T4675C	p.F1559L	ACGCGGTTCCAGA	.	99.0	4.0	82.0	0.0	.	306	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7585893	7585893	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DSP	NM_004415	exon24	c.C8398T	p.L2800L	ACTGGGCTGCGCC	.	95.0	4.0	66.0	0.0	.	306	.	.	Atlas-SNP
ERVFRD-1	405754	hgsc.bcm.edu	hg19	6	11104838	11104838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERVFRD-1	NM_207582	exon2	c.T706C	p.S236P	AAAGAGAATTTCG	.	91.0	4.0	57.0	0.0	.	41	.	.	Atlas-SNP
EDN1	1906	hgsc.bcm.edu	hg19	6	12296284	12296284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EDN1	NM_001955	exon5	c.A623G	p.N208S	CCCACAACCGAGC	.	109.0	5.0	86.0	0.0	.	23	.	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156943	26156943	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A325T	p.K109X	CTCAACAAGAAGG	.	141.0	52.0	119.0	0.0	.	69	.	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156946	26156946	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HIST1H1E	NM_005321	exon1	c.A328T	p.K110X	AACAAGAAGGCGG	.	146.0	55.0	110.0	0.0	.	69	.	.	Atlas-SNP
TRIM39	56658	hgsc.bcm.edu	hg19	6	30297109	30297109	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM39	NM_172016	exon3	c.T15C	p.S5S	GACAAGTCTGTTA	.	75.0	4.0	63.0	0.0	.	56	.	.	Atlas-SNP
ABCF1	23	hgsc.bcm.edu	hg19	6	30550931	30550931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCF1	NM_001025091	exon10	c.G881A	p.R294H	CCTCCCGCCAAGC	.	89.0	4.0	77.0	0.0	.	61	.	.	Atlas-SNP
FLOT1	10211	hgsc.bcm.edu	hg19	6	30709964	30709964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FLOT1	NM_005803	exon2	c.G3A	p.M1I	GAAAAACATGGTT	.	93.0	4.0	72.0	0.0	.	28	.	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	hg19	6	31599743	31599743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRRC2A	NM_004638	exon16	c.C3293T	p.P1098L	AAATCCCCAAGCG	.	74.0	4.0	50.0	0.0	.	152	.	.	Atlas-SNP
APOM	55937	hgsc.bcm.edu	hg19	6	31623826	31623826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOM	NM_019101	exon1	c.A83C	p.Q28P	ACAGTCAACTGAC	.	208.0	41.0	158.0	0.0	.	12	.	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39869662	39869662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DAAM2	NM_001201427	exon25	c.A3056G	p.E1019G	TGGAGGAGGGAGG	.	66.0	11.0	26.0	0.0	.	101	.	.	Atlas-SNP
PEX6	5190	hgsc.bcm.edu	hg19	6	42933450	42933450	+	Nonsense_Mutation	SNP	G	G	A	rs267608241		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PEX6	NM_000287	exon13	c.C2440T	p.R814X	CACTTCGCCCCCG	.	184.0	17.0	148.0	0.0	.	44	.	.	Atlas-SNP
SPATS1	221409	hgsc.bcm.edu	hg19	6	44336153	44336153	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPATS1	NM_145026	exon6	c.A612G	p.P204P	AACTCCAGGCGAC	.	88.0	4.0	62.0	0.0	.	61	.	.	Atlas-SNP
CDC5L	988	hgsc.bcm.edu	hg19	6	44414375	44414375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CDC5L,colon,carcinoma,0,1	CDC5L	NM_001253	exon16	c.A2336G	p.E779G	AACAAGAAAGAGA	.	70.0	3.0	58.0	0.0	.	86	.	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	hg19	6	47649442	47649442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR111	NM_153839	exon7	c.A943G	p.K315E	TTTGAAAAGATCA	.	98.0	4.0	78.0	0.0	.	123	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72678720	72678720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RIMS1	NM_014989	exon2	c.T199C	p.C67R	GCTGCCTGCAAAA	.	102.0	10.0	96.0	0.0	.	278	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84311120	84311120	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SNAP91	NM_001242792	exon15	c.A1194T	p.A398A	AATCTGTGCTTCA	.	177.0	109.0	260.0	0.0	.	199	.	.	Atlas-SNP
ZNF292	23036	hgsc.bcm.edu	hg19	6	87964908	87964908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF292	NM_015021	exon8	c.A1561G	p.I521V	AGAGAGATAAAAC	.	101.0	5.0	130.0	0.0	.	479	.	.	Atlas-SNP
GABRR1	2569	hgsc.bcm.edu	hg19	6	89890099	89890099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GABRR1	NM_002042	exon9	c.T1058C	p.V353A	ACGAACACAAAGC	.	74.0	4.0	122.0	0.0	.	63	.	.	Atlas-SNP
METTL24	728464	hgsc.bcm.edu	hg19	6	110644068	110644068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	C6orf186,colon,carcinoma,0,1	.	NM_001123364	exon2	c.G326T	p.R109L	TGCCACCGGGGAC	.	46.0	2.0	46.0	0.0	.	.	.	.	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	hg19	6	112435867	112435867	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMA4	NM_001105206	exon37	c.A5205G	p.T1735T	CTCACCTGTAATT	.	99.0	4.0	167.0	0.0	.	227	.	.	Atlas-SNP
STX7	8417	hgsc.bcm.edu	hg19	6	132796761	132796761	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STX7	NM_003569	exon3	c.T126C	p.P42P	ATCTTGAGGTGTT	.	62.0	4.0	63.0	0.0	.	25	.	.	Atlas-SNP
ALDH8A1	64577	hgsc.bcm.edu	hg19	6	135239987	135239987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH8A1	NM_022568	exon7	c.A1030G	p.R344G	GAGCTCTCTTGAC	.	106.0	6.0	124.0	0.0	.	68	.	.	Atlas-SNP
ALDH8A1	64577	hgsc.bcm.edu	hg19	6	135253949	135253949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALDH8A1	NM_022568	exon5	c.A814G	p.I272V	CCGGAATGCACTC	.	77.0	4.0	112.0	0.0	.	68	.	.	Atlas-SNP
MTFR2	113115	hgsc.bcm.edu	hg19	6	136564084	136564084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_138419	exon4	c.T196C	p.S66P	TATCAGAGTCTAC	.	56.0	4.0	71.0	0.0	.	.	.	.	Atlas-SNP
MAP3K5	4217	hgsc.bcm.edu	hg19	6	136935339	136935339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAP3K5	NM_005923	exon16	c.G2236T	p.E746X	CATTCTCACTGAA	.	87.0	4.0	113.0	0.0	.	136	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138629880	138629880	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1244	NM_020340	exon24	c.A3978G	p.K1326K	AGGAAAAGGCCAA	.	89.0	4.0	163.0	0.0	.	236	.	.	Atlas-SNP
ZC2HC1B	153918	hgsc.bcm.edu	hg19	6	144207245	144207245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZC2HC1B	NM_001013623	exon3	c.A167G	p.Q56R	GATTACAGGGCAC	.	111.0	5.0	154.0	0.0	.	6	.	.	Atlas-SNP
IPCEF1	26034	hgsc.bcm.edu	hg19	6	154480993	154480993	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IPCEF1	NM_001130699	exon13	c.T1287C	p.P429P	AGAAGAAGGTGAT	.	57.0	5.0	79.0	0.0	.	45	.	.	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	hg19	6	155750089	155750089	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	NOX3,NS,carcinoma,0,1	NOX3	NM_015718	exon9	c.A984G	p.P328P	TATGGCTGGGCAC	.	79.0	4.0	114.0	0.0	.	93	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160469467	160469467	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IGF2R	NM_000876	exon18	c.A2406G	p.E802E	AGGGGAACATGTC	.	62.0	4.0	124.0	0.0	.	251	.	.	Atlas-SNP
THBS2	7058	hgsc.bcm.edu	hg19	6	169626380	169626380	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	THBS2,NS,carcinoma,0,1	THBS2	NM_003247	exon17	c.A2433G	p.E811E	GTCTCGTTCATTG	.	50.0	3.0	84.0	0.0	.	230	.	.	Atlas-SNP
WDR27	253769	hgsc.bcm.edu	hg19	6	170002368	170002368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR27	NM_182552	exon23	c.A2371G	p.I791V	AAGCGATTCCACA	.	72.0	5.0	57.0	0.0	.	129	.	.	Atlas-SNP
NUDT1	4521	hgsc.bcm.edu	hg19	7	2284331	2284331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUDT1	NM_198949	exon3	c.A191G	p.E64G	TGCAAGAAGGAGA	.	67.0	4.0	65.0	0.0	.	22	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2956991	2956991	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CARD11	NM_032415	exon20	c.C2636A	p.S879X	CTTGTTGAAAGCG	.	57.0	4.0	60.0	0.0	.	339	.	.	Atlas-SNP
AP5Z1	9907	hgsc.bcm.edu	hg19	7	4825066	4825066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_014855	exon8	c.T952C	p.S318P	GGGGACTCCGACC	.	55.0	4.0	61.0	0.0	.	.	.	.	Atlas-SNP
SNX13	23161	hgsc.bcm.edu	hg19	7	17915106	17915106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	SNX13,colon,carcinoma,0,1	SNX13	NM_015132	exon7	c.G661A	p.E221K	AACCTTCTTCATC	.	54.0	3.0	74.0	1.0	.	113	.	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	hg19	7	24756897	24756897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DFNA5	NM_001127453	exon5	c.T673C	p.Y225H	TCACGTATAACTC	.	43.0	4.0	61.0	0.0	.	51	.	.	Atlas-SNP
CRHR2	1395	hgsc.bcm.edu	hg19	7	30704769	30704769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CRHR2	NM_001202475	exon6	c.A541G	p.N181D	TGAGGTTCCAGTG	.	97.0	4.0	117.0	0.0	.	104	.	.	Atlas-SNP
AVL9	23080	hgsc.bcm.edu	hg19	7	32612832	32612832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AVL9	NM_015060	exon12	c.A1372G	p.I458V	ATCCAGATCCATG	.	102.0	5.0	98.0	0.0	.	66	.	.	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	hg19	7	38765881	38765881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS41	NM_014396	exon29	c.G2530A	p.G844R	CTGGTCCACGGTT	.	93.0	4.0	110.0	0.0	.	102	.	.	Atlas-SNP
C7orf25	79020	hgsc.bcm.edu	hg19	7	42950513	42950513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C7orf25	NM_001099858	exon2	c.A161G	p.N54S	GCATTATTCCTTT	.	70.0	4.0	103.0	0.0	.	36	.	.	Atlas-SNP
H2AFV	94239	hgsc.bcm.edu	hg19	7	44875219	44875219	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	H2AFV	NM_012412	exon4	c.A234G	p.K78K	CTTTACTTTGAGA	.	82.0	6.0	132.0	0.0	.	14	.	.	Atlas-SNP
CCM2	83605	hgsc.bcm.edu	hg19	7	45077891	45077891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCM2	NM_001029835	exon2	c.G133T	p.G45C	CTAAAAGGTGAAA	.	71.0	4.0	93.0	0.0	.	42	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51085259	51085259	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon13	c.T3775C	p.L1259L	CGAGCAAGGGCAC	.	98.0	4.0	125.0	0.0	.	167	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51096495	51096495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COBL	NM_015198	exon10	c.A2298G	p.K766K	TCTGACTTTCCCA	.	86.0	5.0	150.0	0.0	.	167	.	.	Atlas-SNP
ZNF716	441234	hgsc.bcm.edu	hg19	7	57522850	57522850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF716	NM_001159279	exon3	c.A238T	p.N80Y	AAGAGAAATGAGA	.	34.0	9.0	41.0	0.0	.	207	.	.	Atlas-SNP
ZNF716	441234	hgsc.bcm.edu	hg19	7	57522851	57522851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF716	NM_001159279	exon3	c.A239T	p.N80I	AGAGAAATGAGAT	.	34.0	9.0	41.0	0.0	.	207	.	.	Atlas-SNP
ZNF273	10793	hgsc.bcm.edu	hg19	7	64389279	64389279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF273	NM_021148	exon4	c.C1573T	p.R525W	TTTAACCGGTCCT	.	127.0	6.0	113.0	0.0	.	45	.	.	Atlas-SNP
ZNF92	168374	hgsc.bcm.edu	hg19	7	64864692	64864692	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF92	NM_152626	exon4	c.T1665C	p.H555H	TACACATCAGATA	.	82.0	4.0	106.0	0.0	.	68	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75184733	75184733	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	HIP1,NS,carcinoma,0,1	HIP1	NM_005338	exon19	c.C1950T	p.C650C	CCCAGCGCAGCTG	.	100.0	4.0	146.0	0.0	.	91	.	.	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	hg19	7	76883831	76883831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC146	NM_020879	exon5	c.A458G	p.E153G	TAAAGGAAGAAAA	.	40.0	4.0	52.0	0.0	.	87	.	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91706167	91706167	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP9	NM_005751	exon29	c.6613-2A>G	.	TATTAAAGATTAC	.	121.0	5.0	171.0	0.0	.	788	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94057035	94057035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	COL1A2	NM_000089	exon49	c.C3364A	p.P1122T	GACCAGCCTCGCT	.	95.0	4.0	86.0	0.0	.	240	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98609873	98609873	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRRAP	NM_001244580	exon72	c.C11475T	p.L3825L	CAACCTCGCCCAG	.	63.0	12.0	81.0	0.0	.	863	.	.	Atlas-SNP
STAG3	10734	hgsc.bcm.edu	hg19	7	99800175	99800175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STAG3	NM_012447	exon25	c.A2662G	p.M888V	CTGGAGATGGATG	.	57.0	4.0	88.0	0.0	.	121	.	.	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	hg19	7	101839938	101839938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CUX1	NM_001202543	exon15	c.A1280G	p.D427G	GGAAAGACCAGCC	.	96.0	4.0	132.0	0.0	.	253	.	.	Atlas-SNP
CFTR	1080	hgsc.bcm.edu	hg19	7	117232660	117232660	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CFTR	NM_000492	exon14	c.T2439C	p.S813S	GTTATCTCAAGAA	.	61.0	4.0	83.0	0.0	.	171	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121652375	121652375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	PTPRZ1_ENST00000393386,NS,carcinoma,0,2	PTPRZ1	NM_002851	exon12	c.T3275C	p.I1092T	TTTCCATTTCTAG	.	92.0	4.0	139.0	0.0	.	605	.	.	Atlas-SNP
RNF148	378925	hgsc.bcm.edu	hg19	7	122342235	122342235	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RNF148	NM_198085	exon1	c.C570T	p.Y190Y	CATGATGTAATGG	.	84.0	4.0	97.0	0.0	.	71	.	.	Atlas-SNP
CREB3L2	64764	hgsc.bcm.edu	hg19	7	137567210	137567210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CREB3L2	NM_194071	exon11	c.T1435C	p.S479P	CATTCGAGATAAT	.	122.0	5.0	115.0	0.0	.	62	.	.	Atlas-SNP
OR9A4	130075	hgsc.bcm.edu	hg19	7	141619595	141619595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR9A4	NM_001001656	exon1	c.G920T	p.R307L	TGAAACGCTGCTG	.	61.0	24.0	69.0	0.0	.	58	.	.	Atlas-SNP
FAM131B	9715	hgsc.bcm.edu	hg19	7	143054115	143054115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM131B	NM_001031690	exon7	c.A611G	p.D204G	AGGGCATCTGGAA	.	74.0	4.0	74.0	0.0	.	104	.	.	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	hg19	7	149133833	149133833	+	Missense_Mutation	SNP	C	C	T	rs375051872		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF777	NM_015694	exon5	c.G1172A	p.G391E	ACCTGTCCCATCA	.	90.0	5.0	94.0	0.0	.	63	.	.	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	hg19	7	150912710	150912710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCF2	NM_005692	exon13	c.G1510T	p.G504C	TGAGACCGTATCG	.	99.0	4.0	122.0	0.0	.	54	.	.	Atlas-SNP
XKR6	286046	hgsc.bcm.edu	hg19	8	10756400	10756400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XKR6	NM_173683	exon3	c.T988C	p.S330P	CCAGGGACATCAG	.	43.0	6.0	111.0	0.0	.	85	.	.	Atlas-SNP
XPO7	23039	hgsc.bcm.edu	hg19	8	21848326	21848326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	XPO7	NM_015024	exon18	c.A1937G	p.E646G	AGAGCGAGCACTT	.	21.0	4.0	88.0	0.0	.	79	.	.	Atlas-SNP
HR	55806	hgsc.bcm.edu	hg19	8	21984816	21984816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HR	NM_018411	exon3	c.A1139G	p.K380R	GTCTTCTTCAGCT	.	75.0	4.0	156.0	0.0	.	71	.	.	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	hg19	8	25191685	25191685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DOCK5	NM_024940	exon21	c.A2165G	p.K722R	TTTACAAGCACTT	.	100.0	4.0	373.0	0.0	.	167	.	.	Atlas-SNP
PPP2R2A	5520	hgsc.bcm.edu	hg19	8	26227714	26227714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP2R2A	NM_001177591	exon10	c.A1159G	p.I387V	CGAGACATAACCC	.	108.0	5.0	200.0	0.0	.	44	.	.	Atlas-SNP
ELP3	55140	hgsc.bcm.edu	hg19	8	28016144	28016144	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ELP3	NM_018091	exon12	c.A1251G	p.P417P	ACGGCCATACCAG	.	44.0	4.0	147.0	0.0	.	36	.	.	Atlas-SNP
HMBOX1	79618	hgsc.bcm.edu	hg19	8	28904937	28904937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	HMBOX1,NS,carcinoma,0,1	HMBOX1	NM_024567	exon9	c.A997G	p.R333G	GCTAACAGAAGGA	.	69.0	3.0	142.0	0.0	.	34	.	.	Atlas-SNP
MBOAT4	619373	hgsc.bcm.edu	hg19	8	29989847	29989847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MBOAT4	NM_001100916	exon3	c.A920G	p.N307S	CTTTGGTTCCACT	.	100.0	4.0	263.0	0.0	.	31	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41791422	41791422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001099412	exon18	c.A4316G	p.H1439R	CCCTCATGCTCAC	.	61.0	5.0	109.0	0.0	.	.	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41794799	41794799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001099412	exon17	c.A3327T	p.E1109D	TTCATCTTCTTCT	.	31.0	4.0	100.0	0.0	.	.	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73480279	73480279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	KCNB2,NS,carcinoma,0,1	KCNB2	NM_004770	exon2	c.C310T	p.R104W	TTCTACCGGACCG	.	302.0	21.0	178.0	1.0	.	228	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77616406	77616406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFHX4	NM_024721	exon2	c.A83G	p.D28G	AACTTGATAATGA	.	281.0	27.0	182.0	0.0	.	878	.	.	Atlas-SNP
STMN2	11075	hgsc.bcm.edu	hg19	8	80553709	80553709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STMN2	NM_007029	exon3	c.T212C	p.L71S	GAACTTTAGCTTC	.	246.0	35.0	122.0	0.0	.	23	.	.	Atlas-SNP
REXO1L1	254958	hgsc.bcm.edu	hg19	8	86573858	86573858	+	Silent	SNP	G	G	A	rs145542023		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	REXO1L1_ENST00000379010,NS,carcinoma,0,2	REXO1L1	NM_172239	exon1	c.C1869T	p.A623A	GTAGTCGGCCGCG	.	35.0	2.0	13.0	1.0	.	28	.	.	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	hg19	8	87226642	87226642	+	Silent	SNP	C	C	T	rs202114931	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	SLC7A13,NS,carcinoma,0,2	SLC7A13	NM_138817	exon4	c.G1413A	p.X471X	CGACATCTATTCC	.	16.0	5.0	8.0	0.0	.	97	.	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	hg19	8	88218281	88218281	+	Silent	SNP	A	A	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNBD1	NM_173538	exon5	c.A492C	p.P164P	AATTCCAGATTTA	.	113.0	5.0	63.0	0.0	.	206	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145737638	145737638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RECQL4	NM_004260	exon19	c.A3125G	p.D1042G	GTCAAGTCCCCCG	.	115.0	6.0	57.0	0.0	.	75	.	.	Atlas-SNP
LRRC24	441381	hgsc.bcm.edu	hg19	8	145748134	145748134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC24	NM_001024678	exon5	c.G1267A	p.A423T	TCATGGCGACCAG	.	34.0	7.0	16.0	0.0	.	11	.	.	Atlas-SNP
UHRF2	115426	hgsc.bcm.edu	hg19	9	6481676	6481676	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UHRF2	NM_152896	exon7	c.A1194G	p.E398E	CAGTGAAGTTGTA	.	95.0	4.0	120.0	0.0	.	50	.	.	Atlas-SNP
UHRF2	115426	hgsc.bcm.edu	hg19	9	6493855	6493855	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UHRF2	NM_152896	exon10	c.A1527G	p.G509G	CACTGGAAGCGGT	.	74.0	4.0	120.0	0.0	.	50	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13188853	13188853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MPDZ	NM_003829	exon17	c.A2294G	p.E765G	GCTTCCTCAAGAC	.	97.0	4.0	141.0	0.0	.	324	.	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19350716	19350716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DENND4C	NM_017925	exon23	c.A4187G	p.D1396G	ATAGAGACTACAG	.	70.0	5.0	94.0	0.0	.	120	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27213566	27213566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEK	NM_000459	exon18	c.G2962A	p.G988S	TCCCGAGGTCAAG	.	72.0	4.0	92.0	0.0	.	250	.	.	Atlas-SNP
C9orf72	203228	hgsc.bcm.edu	hg19	9	27556627	27556627	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C9orf72	NM_018325	exon8	c.A1023G	p.R341R	AGTGGCTCTCCAG	.	119.0	5.0	208.0	0.0	.	48	.	.	Atlas-SNP
GALT	2592	hgsc.bcm.edu	hg19	9	34649497	34649497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GALT	NM_000155	exon10	c.T995C	p.V332A	CCACTGTCCGGAA	.	92.0	4.0	117.0	0.0	.	29	.	.	Atlas-SNP
IL11RA	3590	hgsc.bcm.edu	hg19	9	34656848	34656848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IL11RA	NM_001142784	exon4	c.T274C	p.Y92H	GGCACCTACATCT	.	75.0	4.0	131.0	0.0	.	34	.	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35389938	35389938	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC13B	NM_006377	exon24	c.A2943G	p.E981E	AGAGGAAGATAAG	.	109.0	5.0	167.0	0.0	.	153	.	.	Atlas-SNP
GNE	10020	hgsc.bcm.edu	hg19	9	36222836	36222836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNE	NM_001128227	exon9	c.C1664T	p.A555V	CTTTCCGCCAGGG	.	96.0	4.0	159.0	0.0	.	141	.	.	Atlas-SNP
FBXO10	26267	hgsc.bcm.edu	hg19	9	37525156	37525156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBXO10	NM_012166	exon6	c.T1720C	p.F574L	CCTTGAAGATGTG	.	78.0	4.0	88.0	0.0	.	75	.	.	Atlas-SNP
TJP2	9414	hgsc.bcm.edu	hg19	9	71845029	71845029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TJP2	NM_001170416	exon11	c.G1645A	p.G549R	AAGAAGGGAGACA	.	80.0	4.0	123.0	0.0	.	120	.	.	Atlas-SNP
PTAR1	375743	hgsc.bcm.edu	hg19	9	72356709	72356709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTAR1	NM_001099666	exon3	c.A322G	p.R108G	CATACCTCACGTT	.	99.0	4.0	133.0	0.0	.	46	.	.	Atlas-SNP
C9orf57	138240	hgsc.bcm.edu	hg19	9	74674293	74674293	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C9orf57	NM_001128618	exon2	c.T21C	p.S7S	CGTCCCACTGATT	.	86.0	4.0	108.0	0.0	.	16	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79461504	79461504	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRUNE2	NM_015225	exon4	c.T435C	p.S145S	GAGAGAAGAGGAA	.	80.0	5.0	114.0	0.0	.	331	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79960046	79960046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS13A	NM_001018038	exon52	c.A7277G	p.Q2426R	TTGTTCAATACAA	.	88.0	4.0	104.0	0.0	.	735	.	.	Atlas-SNP
GKAP1	80318	hgsc.bcm.edu	hg19	9	86395306	86395306	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GKAP1	NM_025211	exon7	c.A576T	p.K192N	AGTCTTTTTACTA	.	243.0	17.0	280.0	0.0	.	27	.	.	Atlas-SNP
FAM22F	54754	hgsc.bcm.edu	hg19	9	97080944	97080944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM22F	NM_017561	exon7	c.C2074G	p.P692A	TGGCAGGAGAAGG	.	312.0	21.0	390.0	0.0	.	72	.	.	Atlas-SNP
ZNF782	158431	hgsc.bcm.edu	hg19	9	99580298	99580298	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF782	NM_001001662	exon6	c.A2007G	p.T669T	CTCCCCTGTGTGA	.	175.0	8.0	246.0	0.0	.	64	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100074426	100074426	+	Silent	SNP	C	C	A	rs377165805	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_020893	exon4	c.C424A	p.R142R	AAAGCCCGAGAGA	.	73.0	4.0	95.0	0.0	.	.	.	.	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	hg19	9	111656321	111656321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IKBKAP	NM_003640	exon26	c.T2762C	p.L921P	GTATTAAGAAATG	.	69.0	4.0	118.0	0.0	.	122	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113169046	113169046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SVEP1	NM_153366	exon38	c.A8834G	p.K2945R	ACTGGTTTACAGA	.	97.0	4.0	118.0	0.0	.	326	.	.	Atlas-SNP
SLC31A1	1317	hgsc.bcm.edu	hg19	9	116018546	116018546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC31A1	NM_001859	exon2	c.A118G	p.M40V	AGCAGCATGATGA	.	166.0	7.0	203.0	0.0	.	12	.	.	Atlas-SNP
WDR31	114987	hgsc.bcm.edu	hg19	9	116079110	116079110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR31	NM_001012361	exon11	c.T1023C	p.C341C	ACTTGCACACAAT	.	56.0	4.0	90.0	0.0	.	23	.	.	Atlas-SNP
TNC	3371	hgsc.bcm.edu	hg19	9	117852928	117852928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TNC,NS,carcinoma,0,1	TNC	NM_002160	exon2	c.A370G	p.S124G	GTCTGCTCAGCAG	.	94.0	4.0	95.0	1.0	.	282	.	.	Atlas-SNP
CDK5RAP2	55755	hgsc.bcm.edu	hg19	9	123156882	123156882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDK5RAP2	NM_018249	exon36	c.A5486T	p.H1829L	TTTTTATGTAGTT	.	252.0	35.0	319.0	0.0	.	157	.	.	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	hg19	9	125642094	125642094	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RC3H2	NM_018835	exon8	c.A1152G	p.V384V	ATGAACTACTGTT	.	68.0	5.0	78.0	0.0	.	150	.	.	Atlas-SNP
ODF2	4957	hgsc.bcm.edu	hg19	9	131231625	131231625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ODF2	NM_153435	exon5	c.A605G	p.K202R	GTCTGAAGTCTGA	.	63.0	4.0	89.0	0.0	.	227	.	.	Atlas-SNP
PHYHD1	254295	hgsc.bcm.edu	hg19	9	131689459	131689459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHYHD1	NM_001100877	exon2	c.A176G	p.E59G	AAGAGGAGCAGCT	.	70.0	4.0	102.0	0.0	.	29	.	.	Atlas-SNP
PTGES	9536	hgsc.bcm.edu	hg19	9	132502117	132502117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTGES	NM_004878	exon3	c.A232G	p.T78A	AGATGGTCTCCAT	.	90.0	4.0	118.0	0.0	.	7	.	.	Atlas-SNP
TOR1B	27348	hgsc.bcm.edu	hg19	9	132571282	132571282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TOR1B	NM_014506	exon4	c.T740C	p.L247P	CTGTACTGTCTGT	.	78.0	4.0	95.0	0.0	.	20	.	.	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135771990	135771990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TSC1,colon,carcinoma,0,2	TSC1	NM_000368	exon23	c.A3127G	p.S1043G	GCTCGCTGCTGCT	.	34.0	3.0	55.0	1.0	.	167	.	.	Atlas-SNP
GLT6D1	360203	hgsc.bcm.edu	hg19	9	138516329	138516329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLT6D1	NM_182974	exon5	c.G445A	p.V149M	CATGCACCAGGGG	.	47.0	4.0	80.0	0.0	.	56	.	.	Atlas-SNP
LCN8	138307	hgsc.bcm.edu	hg19	9	139651509	139651509	+	Missense_Mutation	SNP	C	C	T	rs140571672		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LCN8	NM_178469	exon2	c.G136A	p.V46M	CCTTCACGGTCAG	.	76.0	4.0	90.0	0.0	.	14	.	C|1.000;T|0.000	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	hg19	9	139837940	139837940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBXW5	NM_018998	exon3	c.A212G	p.E71G	AACTCCTCGTACC	.	62.0	4.0	71.0	0.0	.	36	.	.	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3208567	3208567	+	Missense_Mutation	SNP	T	T	G	rs28416720	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	PITRM1,colon,carcinoma,0,3	PITRM1	NM_014889	exon4	c.A272C	p.Q91P	CGGAACTGCACGC	.	25.0	6.0	38.0	0.0	.	109	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7247842	7247842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SFMBT2	NM_001029880	exon12	c.A1379G	p.D460G	AAGATGTCCATGG	.	95.0	5.0	144.0	0.0	.	209	.	.	Atlas-SNP
MLLT10	8028	hgsc.bcm.edu	hg19	10	22030912	22030912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLLT10	NM_001195626	exon22	c.A3207G	p.X1069W	AAGTTGACACCTG	.	104.0	6.0	166.0	0.0	.	183	.	.	Atlas-SNP
ZEB1	6935	hgsc.bcm.edu	hg19	10	31815839	31815839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZEB1	NM_001174096	exon9	c.A3025G	p.N1009D	CTCTCGAATGAGC	.	66.0	4.0	77.0	0.0	.	173	.	.	Atlas-SNP
NRP1	8829	hgsc.bcm.edu	hg19	10	33552610	33552610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NRP1	NM_001244973	exon4	c.T622C	p.Y208H	GGTCGTAGCGACA	.	84.0	4.0	89.0	0.0	.	126	.	.	Atlas-SNP
ZNF33B	7582	hgsc.bcm.edu	hg19	10	43089012	43089012	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF33B	NM_006955	exon5	c.T1386C	p.T462T	TGTGTGAGTTCTC	.	98.0	4.0	164.0	0.0	.	78	.	.	Atlas-SNP
ALOX5	240	hgsc.bcm.edu	hg19	10	45939627	45939627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALOX5	NM_000698	exon13	c.A1738G	p.K580E	ACTGCCAAGGGCG	.	74.0	4.0	109.0	0.0	.	88	.	.	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	hg19	10	49457197	49457197	+	Missense_Mutation	SNP	G	G	A	rs142764597	alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRMPD2	NM_001018071	exon3	c.C176T	p.P59L	GACCAGGGGCAAA	.	83.0	4.0	89.0	0.0	.	157	.	G|1.000;T|0.000	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49943958	49943958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDFY4	NM_020945	exon11	c.T1721C	p.I574T	CCTTCATCAAGAT	.	60.0	4.0	67.0	0.0	.	205	.	.	Atlas-SNP
VSTM4	196740	hgsc.bcm.edu	hg19	10	50256529	50256529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM4	NM_001031746	exon6	c.G769A	p.A257T	CTTTGGCAGGGAC	.	51.0	4.0	87.0	0.0	.	83	.	.	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	hg19	10	50701191	50701191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERCC6	NM_000124	exon8	c.C1793G	p.T598R	GTTTCATGTAGAA	.	98.0	4.0	138.0	0.0	.	162	.	.	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	hg19	10	50701217	50701217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERCC6	NM_000124	exon8	c.C1767A	p.F589L	CGGAGGCCACCAC	.	109.0	5.0	150.0	0.0	.	162	.	.	Atlas-SNP
CHAT	1103	hgsc.bcm.edu	hg19	10	50830196	50830196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHAT	NM_020549	exon5	c.G752T	p.S251I	TGGACAGGTAGGA	.	100.0	4.0	147.0	0.0	.	162	.	.	Atlas-SNP
CISD1	55847	hgsc.bcm.edu	hg19	10	60047332	60047332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CISD1	NM_018464	exon3	c.T249C	p.C83C	ATTCTGTGATGGG	.	99.0	4.0	134.0	0.0	.	7	.	.	Atlas-SNP
SUPV3L1	6832	hgsc.bcm.edu	hg19	10	70968547	70968547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SUPV3L1	NM_003171	exon15	c.A2117G	p.Q706R	AGAGCCAAGCTAG	.	86.0	4.0	155.0	0.0	.	61	.	.	Atlas-SNP
PRF1	5551	hgsc.bcm.edu	hg19	10	72357981	72357981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRF1	NM_001083116	exon3	c.A1496G	p.Q499R	GGAGCCTGATCAC	.	88.0	4.0	103.0	0.0	.	64	.	.	Atlas-SNP
MICU1	10367	hgsc.bcm.edu	hg19	10	74267928	74267928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001195518	exon6	c.A637G	p.T213A	CAGTTGTGAGGAA	.	97.0	4.0	100.0	0.0	.	.	.	.	Atlas-SNP
FUT11	170384	hgsc.bcm.edu	hg19	10	75532420	75532420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FUT11	NM_173540	exon1	c.G329A	p.R110Q	ACCGCCGAGCGCT	.	20.0	4.0	15.0	0.0	.	30	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76788662	76788662	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_012330	exon18	c.A4080G	p.E1360E	GGAGGAAGAGGAA	.	39.0	5.0	37.0	0.0	.	.	.	.	Atlas-SNP
RPS24	6229	hgsc.bcm.edu	hg19	10	79795311	79795311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS24	NM_001142283	exon3	c.A112G	p.T38A	CCTAAGACAGAAA	.	70.0	4.0	71.0	0.0	.	23	.	.	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	hg19	10	82049166	82049166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MAT1A	NM_000429	exon1	c.T14C	p.V5A	CCATCCACCGGTC	.	85.0	6.0	179.0	0.0	.	52	.	.	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	hg19	10	86001096	86001096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRIT1	NM_015613	exon1	c.A100G	p.M34V	CACCCATGATATG	.	84.0	4.0	89.0	0.0	.	73	.	.	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88259819	88259819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WAPAL	NM_015045	exon3	c.A1181G	p.E394G	CCAGCTTCTCCCA	.	113.0	5.0	163.0	0.0	.	81	.	.	Atlas-SNP
IFIT2	3433	hgsc.bcm.edu	hg19	10	91066406	91066406	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT2	NM_001547	exon2	c.A693G	p.E231E	AGGTGAAGGAGAG	.	72.0	4.0	92.0	0.0	.	39	.	.	Atlas-SNP
IFIT1B	439996	hgsc.bcm.edu	hg19	10	91144106	91144106	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IFIT1B	NM_001010987	exon2	c.C1036T	p.L346L	GTTGACCTGGCTG	.	61.0	4.0	60.0	0.0	.	39	.	.	Atlas-SNP
TCTN3	26123	hgsc.bcm.edu	hg19	10	97453399	97453399	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TCTN3	NM_015631	exon2	c.256+2T>C	.	TCCCTCACCTGGG	.	53.0	4.0	72.0	0.0	.	66	.	.	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98743214	98743214	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C10orf12	NM_015652	exon1	c.C2067A	p.T689T	AAACACCCAGCAG	.	57.0	4.0	84.0	0.0	.	94	.	.	Atlas-SNP
ANKRD2	26287	hgsc.bcm.edu	hg19	10	99342105	99342105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANKRD2	NM_020349	exon7	c.A769G	p.T257A	GTCCGGACAGGGC	.	65.0	5.0	113.0	0.0	.	27	.	.	Atlas-SNP
R3HCC1L	27291	hgsc.bcm.edu	hg19	10	100003864	100003864	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	R3HCC1L	NM_001256619	exon11	c.A2328G	p.E776E	GTTGGAAGCCAAG	.	87.0	4.0	112.0	0.0	.	3	.	.	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	hg19	10	101136951	101136951	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNNM1	NM_020348	exon7	c.C2316A	p.I772I	CCACATCCTCAGC	.	100.0	4.0	154.0	0.0	.	101	.	.	Atlas-SNP
HPS6	79803	hgsc.bcm.edu	hg19	10	103827332	103827332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HPS6	NM_024747	exon1	c.C2101T	p.P701S	CTGGCTCCAGCTG	.	56.0	4.0	55.0	0.0	.	38	.	.	Atlas-SNP
NFKB2	4791	hgsc.bcm.edu	hg19	10	104160556	104160556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFKB2	NM_001077494	exon17	c.G1943A	p.G648E	AGCTGGGGTTGGT	.	100.0	4.0	115.0	0.0	.	48	.	.	Atlas-SNP
PSD	5662	hgsc.bcm.edu	hg19	10	104164802	104164802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	PSD_ENST00000020673,NS,carcinoma,0,2	PSD	NM_001270965	exon15	c.A2408G	p.K803R	CCAGGCTTGTACT	.	125.0	6.0	162.0	1.0	.	164	.	.	Atlas-SNP
TRIM8	81603	hgsc.bcm.edu	hg19	10	104414949	104414949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM8	NM_030912	exon3	c.A779G	p.K260R	AGGCCAAGTTCTG	.	96.0	4.0	124.0	0.0	.	35	.	.	Atlas-SNP
CALHM3	119395	hgsc.bcm.edu	hg19	10	105233172	105233172	+	Missense_Mutation	SNP	T	T	G	rs199875922	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CALHM3_ENST00000369783,caecum,carcinoma,0,2	CALHM3	NM_001129742	exon3	c.A833C	p.E278A	AGGCCTTCTGGGG	.	25.0	3.0	34.0	0.0	.	46	.	.	Atlas-SNP
CALHM3	119395	hgsc.bcm.edu	hg19	10	105233174	105233174	+	Silent	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.,4	CALHM3	NM_001129742	exon3	c.A831C	p.P277P	GCCTTCTGGGGGC	.	24.0	3.0	32.0	0.0	.	46	.	.	Atlas-SNP
SLK	9748	hgsc.bcm.edu	hg19	10	105750545	105750545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLK	NM_014720	exon2	c.A263G	p.H88R	GTGATCACCCAAA	.	127.0	37.0	114.0	0.0	.	107	.	.	Atlas-SNP
SMNDC1	10285	hgsc.bcm.edu	hg19	10	112054041	112054041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMNDC1	NM_005871	exon6	c.A584G	p.K195R	CTCCTCTTTACCT	.	95.0	4.0	115.0	0.0	.	9	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	116931101	116931101	+	Silent	SNP	C	C	T	rs113157696	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATRNL1	NM_001276282	exon8	c.C1399T	p.L467L	TTTTCTCTAATAA	.	128.0	9.0	171.0	0.0	.	219	.	C|0.500;T|0.500	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123842981	123842981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TACC2	NM_206862	exon4	c.A966G	p.E322E	CCCAGAAGCAGAA	.	61.0	5.0	64.0	0.0	.	271	.	.	Atlas-SNP
LRRC56	115399	hgsc.bcm.edu	hg19	11	552650	552650	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC56	NM_198075	exon13	c.A1263G	p.Q421Q	AGAGCAAGTGCAC	.	124.0	5.0	116.0	0.0	.	23	.	.	Atlas-SNP
PNPLA2	57104	hgsc.bcm.edu	hg19	11	821745	821745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PNPLA2	NM_020376	exon3	c.T305C	p.L102P	AGGTCCTGCCTGC	.	99.0	4.0	102.0	0.0	.	26	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1025876	1025876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MUC6	NM_005961	exon22	c.A2728G	p.I910V	TCAGGATCTTGAA	.	81.0	4.0	113.0	0.0	.	408	.	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4592711	4592711	+	Missense_Mutation	SNP	T	T	A	rs78543312		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C11orf40	NM_144663	exon4	c.A596T	p.N199I	ATACAGTTTTTCC	.	203.0	17.0	236.0	0.0	.	37	.	.	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	hg19	11	4592712	4592712	+	Missense_Mutation	SNP	T	T	G	rs78387367	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C11orf40	NM_144663	exon4	c.A595C	p.N199H	TACAGTTTTTCCC	.	198.0	12.0	234.0	0.0	.	37	.	.	Atlas-SNP
OR51B4	79339	hgsc.bcm.edu	hg19	11	5322255	5322255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR51B4	NM_033179	exon1	c.A922G	p.S308G	CCCTACTCTGCCC	.	72.0	4.0	84.0	0.0	.	64	.	.	Atlas-SNP
TRIM3	10612	hgsc.bcm.edu	hg19	11	6471835	6471835	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM3	NM_001248006	exon10	c.T1887C	p.A629A	GTTCACAGCCACA	.	101.0	5.0	84.0	0.0	.	67	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6567219	6567219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNHD1	NM_144666	exon21	c.A5050G	p.T1684A	TGTGGGACCGTAC	.	118.0	5.0	145.0	0.0	.	198	.	.	Atlas-SNP
ZNF215	7762	hgsc.bcm.edu	hg19	11	6977409	6977409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF215	NM_013250	exon7	c.C1201T	p.H401Y	ATCATTCACACAG	.	76.0	4.0	68.0	0.0	.	72	.	.	Atlas-SNP
RPL27A	6157	hgsc.bcm.edu	hg19	11	8704765	8704765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPL27A	NM_000990	exon2	c.A20G	p.K7R	TGAGGAAGACCCG	.	78.0	4.0	101.0	0.0	.	5	.	.	Atlas-SNP
NUCB2	4925	hgsc.bcm.edu	hg19	11	17352477	17352477	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUCB2	NM_005013	exon13	c.T1202A	p.L401X	AAAAATTACAACA	.	304.0	17.0	300.0	0.0	.	31	.	.	Atlas-SNP
NUCB2	4925	hgsc.bcm.edu	hg19	11	17352479	17352479	+	Nonsense_Mutation	SNP	C	C	T	rs189362726		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUCB2	NM_005013	exon13	c.C1204T	p.Q402X	AAATTACAACAAG	.	43.0	18.0	9.0	0.0	.	31	.	.	Atlas-SNP
NUCB2	4925	hgsc.bcm.edu	hg19	11	17352480	17352480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NUCB2	NM_005013	exon13	c.A1205T	p.Q402L	AATTACAACAAGG	.	43.0	20.0	6.0	0.0	.	31	.	.	Atlas-SNP
FIBIN	387758	hgsc.bcm.edu	hg19	11	27016470	27016470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FIBIN	NM_203371	exon1	c.T397C	p.S133P	TCCAACTCGGACA	.	51.0	5.0	43.0	0.0	.	19	.	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	hg19	11	30900222	30900222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DCDC5	NM_020869	exon19	c.C2582G	p.A861G	ATTCTGGCATAAT	.	95.0	39.0	90.0	0.0	.	137	.	.	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	hg19	11	32955843	32955843	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	QSER1	NM_001076786	exon4	c.T2652C	p.G884G	AGATGGTGATTCT	.	112.0	5.0	189.0	0.0	.	153	.	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	hg19	11	35222635	35222635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CD44	NM_000610	exon8	c.C929T	p.T310I	TTTCAACCACACC	.	67.0	4.0	62.0	0.0	.	48	.	.	Atlas-SNP
AMBRA1	55626	hgsc.bcm.edu	hg19	11	46456589	46456589	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AMBRA1	NM_017749	exon15	c.2363-2A>G	.	GGAAGCTGCATCA	.	96.0	4.0	78.0	0.0	.	201	.	.	Atlas-SNP
OR4B1	119765	hgsc.bcm.edu	hg19	11	48239231	48239231	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR4B1	NM_001005470	exon1	c.A870G	p.A290A	GAATGCAGAGGTG	.	74.0	4.0	61.0	0.0	.	52	.	.	Atlas-SNP
OR5M1	390168	hgsc.bcm.edu	hg19	11	56380553	56380553	+	Silent	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR5M1	NM_001004740	exon1	c.C426G	p.V142V	CAGACAGACACAG	.	168.0	9.0	197.0	0.0	.	92	.	.	Atlas-SNP
SERPING1	710	hgsc.bcm.edu	hg19	11	57374013	57374013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERPING1	NM_001032295	exon5	c.A1022G	p.K341R	CTTTGAAAGCCAA	.	65.0	4.0	82.0	0.0	.	57	.	.	Atlas-SNP
OR5B21	219968	hgsc.bcm.edu	hg19	11	58275280	58275280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR5B21	NM_001005218	exon1	c.T299C	p.F100S	AAGAAGAAGAACT	.	94.0	4.0	123.0	0.0	.	59	.	.	Atlas-SNP
MS4A6A	64231	hgsc.bcm.edu	hg19	11	59947428	59947428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MS4A6A	NM_001247999	exon4	c.T242C	p.I81T	CACAAGATCTGGA	.	145.0	6.0	153.0	0.0	.	85	.	.	Atlas-SNP
MS4A14	84689	hgsc.bcm.edu	hg19	11	60165354	60165354	+	Silent	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MS4A14	NM_001261828	exon2	c.T168A	p.I56I	AATCATTGTGGGC	.	22.0	14.0	1.0	0.0	.	120	.	.	Atlas-SNP
VPS37C	55048	hgsc.bcm.edu	hg19	11	60900811	60900811	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VPS37C	NM_017966	exon5	c.266-2A>G	.	TTTCTCTGGAAGG	.	61.0	4.0	69.0	0.0	.	30	.	.	Atlas-SNP
DDB1	1642	hgsc.bcm.edu	hg19	11	61097525	61097525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DDB1	NM_001923	exon3	c.T232C	p.F78L	AGATAAACAGCAG	.	142.0	6.0	141.0	0.0	.	100	.	.	Atlas-SNP
SCGB1A1	7356	hgsc.bcm.edu	hg19	11	62189867	62189867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SCGB1A1	NM_003357	exon2	c.T230C	p.I77T	AAAGCATCATTAA	.	71.0	4.0	97.0	0.0	.	5	.	.	Atlas-SNP
INTS5	80789	hgsc.bcm.edu	hg19	11	62416122	62416122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INTS5	NM_030628	exon2	c.T1430C	p.L477P	TTTTTGAGCGCAT	.	69.0	4.0	66.0	0.0	.	81	.	.	Atlas-SNP
ATL3	25923	hgsc.bcm.edu	hg19	11	63396832	63396832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATL3	NM_015459	exon13	c.G1585T	p.A529S	CAACTGCATCCCT	.	249.0	102.0	277.0	0.0	.	31	.	.	Atlas-SNP
KCNK4	50801	hgsc.bcm.edu	hg19	11	64060629	64060629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KCNK4	NM_033310	exon2	c.C139A	p.L47M	AAGTTCCTGAGGG	.	68.0	4.0	74.0	0.0	.	22	.	.	Atlas-SNP
MEN1	4221	hgsc.bcm.edu	hg19	11	64577196	64577196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEN1	NM_130800	exon2	c.T386C	p.L129P	CGGCTGAGGCTGT	.	118.0	8.0	106.0	0.0	.	442	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65351097	65351097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EHBP1L1	NM_001099409	exon9	c.A2954G	p.E985G	GAAATGAGAAGGG	.	83.0	4.0	80.0	0.0	.	64	.	.	Atlas-SNP
OVOL1	5017	hgsc.bcm.edu	hg19	11	65562182	65562182	+	Silent	SNP	C	C	T	rs377708693		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	OVOL1,NS,carcinoma,0,1	OVOL1	NM_004561	exon3	c.C492T	p.H164H	GAGACACGTCCGA	.	58.0	3.0	70.0	0.0	.	15	.	.	Atlas-SNP
DPP3	10072	hgsc.bcm.edu	hg19	11	66249887	66249887	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DPP3	NM_001256670	exon2	c.C216T	p.P72P	GGACCCCGACCAG	.	34.0	4.0	30.0	0.0	.	61	.	.	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66636393	66636393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PC	NM_000920	exon9	c.A946G	p.R316G	CGTGCCTGTCCAC	.	148.0	7.0	181.0	0.0	.	116	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	hg19	11	67020287	67020287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM2A	NM_012308	exon18	c.T2891C	p.I964T	CCAACATCTCTAA	.	73.0	4.0	86.0	0.0	.	80	.	.	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	hg19	11	72945625	72945625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	P2RY2	NM_176071	exon3	c.T421C	p.S141P	CTGCGCTCCCTGC	.	74.0	4.0	41.0	0.0	.	54	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73824846	73824846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C2CD3	NM_015531	exon11	c.T1822C	p.S608P	TACTGGAGGCGAG	.	76.0	5.0	90.0	0.0	.	288	.	.	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	hg19	11	83173062	83173062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DLG2	NM_001142699	exon27	c.T2804C	p.F935S	TCTCCAAATTCTT	.	496.0	53.0	552.0	0.0	.	448	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93432054	93432054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1731	NM_033395	exon15	c.A3976G	p.S1326G	TTTTCAAGCCACC	.	100.0	4.0	148.0	0.0	.	173	.	.	Atlas-SNP
MED17	9440	hgsc.bcm.edu	hg19	11	93528080	93528080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED17	NM_004268	exon6	c.C866T	p.P289L	GTTCCCCACATTG	.	84.0	4.0	99.0	0.0	.	37	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93844145	93844145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEPHL1	NM_001098672	exon18	c.A3122G	p.H1041R	CAGATCACCCAGG	.	125.0	5.0	134.0	0.0	.	144	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93845031	93845031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HEPHL1	NM_001098672	exon20	c.T3451C	p.S1151P	GTCCAGTCCTGTG	.	94.0	4.0	138.0	0.0	.	144	.	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108398908	108398908	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon4	c.T447C	p.C149C	GCCATCACATCTG	.	66.0	4.0	84.0	0.0	.	193	.	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108464205	108464205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXPH5	NM_015065	exon1	c.A59G	p.K20R	AGGATCTTCCTGG	.	199.0	8.0	202.0	0.0	.	193	.	.	Atlas-SNP
PAFAH1B2	5049	hgsc.bcm.edu	hg19	11	117031926	117031926	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PAFAH1B2	NM_001184747	exon4	c.A237G	p.R79R	AACAAGACATGTT	.	107.0	5.0	116.0	0.0	.	19	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CEP164,caecum,carcinoma,0,1	CEP164	NM_001271933	exon4	c.A347G	p.K116R	AAAAAAAGGAAAA	.	73.0	3.0	76.0	1.0	.	121	.	.	Atlas-SNP
HINFP	25988	hgsc.bcm.edu	hg19	11	119004976	119004976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HINFP	NM_015517	exon11	c.A1322G	p.E441G	AGGAAGAGGAAGA	.	90.0	4.0	118.0	0.0	.	50	.	.	Atlas-SNP
TRIM29	23650	hgsc.bcm.edu	hg19	11	120007994	120007994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM29	NM_012101	exon1	c.T746C	p.F249S	TCCTGGAACATGC	.	94.0	5.0	96.0	0.0	.	78	.	.	Atlas-SNP
OAF	220323	hgsc.bcm.edu	hg19	11	120096467	120096467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OAF	NM_178507	exon2	c.A329G	p.E110G	ACAATGAGATCAT	.	70.0	4.0	62.0	0.0	.	12	.	.	Atlas-SNP
OR8B4	283162	hgsc.bcm.edu	hg19	11	124294157	124294157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR8B4	NM_001005196	exon1	c.T611A	p.V204E	GTGATTACTCCAA	.	112.0	6.0	126.0	0.0	.	60	.	.	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124764172	124764172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ROBO4,colon,carcinoma,0,1	ROBO4	NM_019055	exon8	c.T1243C	p.S415P	AGTAGGAGCCTGG	.	109.0	5.0	132.0	0.0	.	130	.	.	Atlas-SNP
NFRKB	4798	hgsc.bcm.edu	hg19	11	129752348	129752348	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFRKB	NM_006165	exon8	c.A1155G	p.E385E	TTACTCTTCCTTG	.	120.0	6.0	96.0	0.0	.	101	.	.	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	352865	352865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC6A13	NM_016615	exon3	c.A317G	p.K106R	CAGATCTTCCTCC	.	114.0	5.0	134.0	0.0	.	62	.	.	Atlas-SNP
EFCAB4B	84766	hgsc.bcm.edu	hg19	12	3788250	3788250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EFCAB4B	NM_001144958	exon6	c.A355G	p.S119G	TCTGGCTGAAGAA	.	69.0	4.0	130.0	0.0	.	100	.	.	Atlas-SNP
PARP11	57097	hgsc.bcm.edu	hg19	12	3931065	3931065	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PARP11	NM_020367	exon6	c.C522T	p.N174N	ATCTAGGTTTTGA	.	90.0	4.0	119.0	0.0	.	39	.	.	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	hg19	12	4553334	4553334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	FGF6,NS,carcinoma,0,1	FGF6	NM_020996	exon2	c.G415A	p.V139I	TGGCAACGAAGAG	.	95.0	24.0	103.0	0.0	.	40	.	.	Atlas-SNP
APOBEC1	339	hgsc.bcm.edu	hg19	12	7805229	7805229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOBEC1	NM_001644	exon3	c.T247C	p.S83P	TGATGGAGCAGCT	.	64.0	4.0	94.0	0.0	.	43	.	.	Atlas-SNP
FOXJ2	55810	hgsc.bcm.edu	hg19	12	8202064	8202064	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FOXJ2	NM_018416	exon9	c.T1434C	p.G478G	GACTGGTCACGTG	.	70.0	4.0	81.0	0.0	.	43	.	.	Atlas-SNP
C3AR1	719	hgsc.bcm.edu	hg19	12	8212440	8212440	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C3AR1	NM_004054	exon2	c.T342C	p.T114T	AATGGCAGTAAGC	.	81.0	4.0	162.0	0.0	.	61	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9318676	9318676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PZP	NM_002864	exon18	c.A2230G	p.T744A	TCCAAGTCTCAGG	.	89.0	5.0	135.0	0.0	.	422	.	.	Atlas-SNP
KLRF1	51348	hgsc.bcm.edu	hg19	12	9994450	9994450	+	Missense_Mutation	SNP	G	G	A	rs111928232	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLRF1	NM_016523	exon4	c.G377A	p.C126Y	AGTGTTGTTATTG	.	221.0	13.0	230.0	0.0	.	27	.	G|0.500;A|0.500	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12279675	12279675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRP6	NM_002336	exon20	c.T4262C	p.V1421A	AGAGGCACAGAAG	.	106.0	5.0	132.0	0.0	.	170	.	.	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	hg19	12	15704607	15704607	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRO	NM_030667	exon15	c.2558+2T>C	.	GCTAGGTAAGTTA	.	84.0	4.0	128.0	0.0	.	148	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19410367	19410367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHA5	NM_001143821	exon6	c.A433G	p.T145A	ATTTAGACTTCAC	.	79.0	4.0	84.0	0.0	.	198	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19499936	19499936	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHA5	NM_001256470	exon24	c.A2718G	p.E906E	AGAGGAAGTAGTC	.	78.0	4.0	128.0	0.0	.	198	.	.	Atlas-SNP
MED21	9412	hgsc.bcm.edu	hg19	12	27181241	27181241	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED21	NM_004264	exon4	c.A282G	p.E94E	GCTAGAAGAAGAA	.	74.0	4.0	90.0	0.0	.	7	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31605207	31605207	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	DENND5B,caecum,carcinoma,0,1	DENND5B	NM_144973	exon5	c.A1296G	p.K432K	GTTCTTTTTGTCA	.	88.0	4.0	144.0	0.0	.	114	.	.	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	hg19	12	32735126	32735126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FGD4	NM_139241	exon4	c.A325G	p.T109A	GCTGCCACTCTTA	.	100.0	5.0	162.0	0.0	.	86	.	.	Atlas-SNP
DNM1L	10059	hgsc.bcm.edu	hg19	12	32854462	32854462	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNM1L	NM_012062	exon2	c.A216G	p.Q72Q	TTCACAAGAAGAT	.	88.0	4.0	93.0	0.0	.	52	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41337846	41337846	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNTN1	NM_001256063	exon14	c.A1557G	p.G519G	AGTTGGAGAAAAC	.	74.0	4.0	132.0	0.0	.	207	.	.	Atlas-SNP
H1FNT	341567	hgsc.bcm.edu	hg19	12	48723755	48723755	+	Silent	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	H1FNT,NS,carcinoma,0,1	H1FNT	NM_181788	exon1	c.G681C	p.P227P	CACGCCGAGGTCA	.	37.0	8.0	51.0	1.0	.	30	.	.	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	hg19	12	49168824	49168824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADCY6	NM_020983	exon12	c.T1994C	p.V665A	GGATCCACCTTCC	.	85.0	5.0	100.0	0.0	.	81	.	.	Atlas-SNP
DDN	23109	hgsc.bcm.edu	hg19	12	49391772	49391772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	DDN_ENST00000421952,NS,carcinoma,0,2	DDN	NM_015086	exon2	c.G887T	p.G296V	GGGGATCCCCCCA	.	54.0	3.0	100.0	0.0	.	54	.	.	Atlas-SNP
PRPF40B	25766	hgsc.bcm.edu	hg19	12	50036726	50036726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRPF40B	NM_001031698	exon22	c.A2132G	p.H711R	GCCAGCACCTCCA	.	120.0	5.0	138.0	0.0	.	83	.	.	Atlas-SNP
KRT84	3890	hgsc.bcm.edu	hg19	12	52779324	52779324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRT84	NM_033045	exon1	c.A46G	p.N16D	TGAAGTTGCCCAC	.	61.0	4.0	83.0	0.0	.	61	.	.	Atlas-SNP
RDH16	8608	hgsc.bcm.edu	hg19	12	57351246	57351246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RDH16	NM_003708	exon1	c.A1G	p.M1V	GCCACATGGCTTT	.	79.0	9.0	113.0	0.0	.	33	.	.	Atlas-SNP
NXPH4	11247	hgsc.bcm.edu	hg19	12	57619481	57619481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NXPH4	NM_007224	exon2	c.A878G	p.K293R	TGCAGAAGGTGTG	.	53.0	5.0	52.0	0.0	.	40	.	.	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62887709	62887709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MON2	NM_015026	exon3	c.A190G	p.S64G	GAGAACAGCTCAG	.	86.0	4.0	142.0	0.0	.	160	.	.	Atlas-SNP
TBK1	29110	hgsc.bcm.edu	hg19	12	64878199	64878199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBK1	NM_013254	exon9	c.T1109C	p.F370S	AACATTTCCCTAA	.	98.0	4.0	141.0	0.0	.	149	.	.	Atlas-SNP
CPM	1368	hgsc.bcm.edu	hg19	12	69326513	69326513	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CPM	NM_001005502	exon2	c.T105C	p.V35V	TTGGGCAACAGTC	.	108.0	5.0	156.0	0.0	.	30	.	.	Atlas-SNP
FRS2	10818	hgsc.bcm.edu	hg19	12	69968235	69968235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FRS2	NM_001042555	exon10	c.A1027G	p.R343G	CAGAGAAGAACTG	.	64.0	4.0	89.0	0.0	.	88	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70989899	70989899	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRB	NM_001109754	exon5	c.A1188G	p.K396K	ATTGTATTTACTA	.	98.0	5.0	149.0	0.0	.	676	.	.	Atlas-SNP
GLIPR1L2	144321	hgsc.bcm.edu	hg19	12	75816822	75816822	+	Silent	SNP	A	A	G	rs75261424		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLIPR1L2	NM_152436	exon4	c.A723G	p.K241K	CAAGAAAAATAAG	.	113.0	7.0	124.0	0.0	.	54	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	90014010	90014010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ATP2B1	NM_001001323	exon10	c.A1595G	p.E532G	TCTTTCTCTGGTG	.	96.0	4.0	139.0	0.0	.	191	.	.	Atlas-SNP
CCER1	196477	hgsc.bcm.edu	hg19	12	91348403	91348403	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152638	exon1	c.T117C	p.H39H	CCTTCGATGGCAG	.	47.0	5.0	34.0	0.0	.	.	.	.	Atlas-SNP
POLR3B	55703	hgsc.bcm.edu	hg19	12	106824062	106824062	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	POLR3B	NM_018082	exon14	c.T1275C	p.S425S	TTGGTCTTTAAAG	.	92.0	4.0	76.0	0.0	.	123	.	.	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109853345	109853345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO1H	NM_001101421	exon14	c.G1469A	p.G490D	TGGCTGGTCCAAA	.	80.0	4.0	71.0	0.0	.	98	.	.	Atlas-SNP
ERP29	10961	hgsc.bcm.edu	hg19	12	112451275	112451275	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ERP29	NM_001034025	exon1	c.T6C	p.A2A	TATGGCTGCCGCT	.	86.0	4.0	58.0	0.0	.	17	.	.	Atlas-SNP
OAS1	4938	hgsc.bcm.edu	hg19	12	113357213	113357213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OAS1	NM_016816	exon6	c.A1058G	p.D353G	GTGCAGACGATGA	.	85.0	4.0	78.0	0.0	.	128	.	.	Atlas-SNP
IQCD	115811	hgsc.bcm.edu	hg19	12	113633675	113633675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	IQCD	NM_138451	exon3	c.A749G	p.D250G	ACAGCGTCCAGAT	.	81.0	4.0	98.0	0.0	.	32	.	.	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	hg19	12	118533406	118533406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSIG10	NM_019086	exon2	c.A293G	p.E98G	ATTCCCTCATCTC	.	92.0	5.0	83.0	0.0	.	41	.	.	Atlas-SNP
GPR133	283383	hgsc.bcm.edu	hg19	12	131616271	131616271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR133	NM_198827	exon21	c.T2177C	p.V726A	TGCAGGTCAACAT	.	167.0	7.0	140.0	0.0	.	136	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132549247	132549247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EP400	NM_015409	exon48	c.A8369G	p.Q2790R	AACTGCAGATGCC	.	64.0	4.0	64.0	0.0	.	370	.	.	Atlas-SNP
GALNT9	50614	hgsc.bcm.edu	hg19	12	132688051	132688051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	GALNT9_ENST00000328957,NS,carcinoma,0,2	GALNT9	NM_001122636	exon7	c.C1262T	p.S421L	CTCACCGACATGG	.	74.0	4.0	65.0	0.0	.	74	.	.	Atlas-SNP
FBRSL1	57666	hgsc.bcm.edu	hg19	12	133102339	133102339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FBRSL1	NM_001142641	exon3	c.A509G	p.K170R	TGTCCAAAGGGGG	.	80.0	4.0	58.0	0.0	.	47	.	.	Atlas-SNP
POLE	5426	hgsc.bcm.edu	hg19	12	133218836	133218836	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	POLE	NM_006231	exon38	c.T5100C	p.D1700D	GTTGTCATCAGCC	.	99.0	4.0	114.0	0.0	.	416	.	.	Atlas-SNP
SKA3	221150	hgsc.bcm.edu	hg19	13	21742126	21742126	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SKA3	NM_001166017	exon5	c.743+1G>T	.	TGCTTACCTTTTA	.	120.0	15.0	142.0	0.0	.	76	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23906630	23906630	+	Silent	SNP	A	A	G	rs148605896	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.T11385C	p.A3795A	CACAAAAGCAACC	.	110.0	5.0	120.0	0.0	.	871	.	A|0.999;C|0.001	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23911630	23911630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SACS	NM_014363	exon10	c.G6385A	p.G2129R	ATCTCCCATCTTT	.	94.0	4.0	131.0	0.0	.	871	.	.	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25744544	25744544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152704	exon1	c.A1214G	p.K405R	GCCGGCTTGCCTG	.	45.0	4.0	60.0	0.0	.	.	.	.	Atlas-SNP
PRHOXNB	646625	hgsc.bcm.edu	hg19	13	28562605	28562605	+	Missense_Mutation	SNP	T	T	C	rs3897926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	PRHOXNB,NS,carcinoma,0,1	PRHOXNB	NM_001105577	exon1	c.A170G	p.Q57R	CCTGACTGTGCAA	.	68.0	3.0	82.0	0.0	.	6	.	T|0.723;G|0.277	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28913323	28913323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FLT1	NM_002019	exon17	c.C2470T	p.R824W	TCTCCCGGGCAAA	.	88.0	4.0	124.0	0.0	.	393	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32914823	32914823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BRCA2	NM_000059	exon11	c.A6331G	p.K2111E	GTTGATAAGAGAA	.	96.0	4.0	102.0	0.0	.	812	.	.	Atlas-SNP
N4BP2L2	10443	hgsc.bcm.edu	hg19	13	33012840	33012840	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	N4BP2L2	NM_033111	exon8	c.T2184C	p.L728L	CCAGTCAAGGGGA	.	111.0	5.0	96.0	0.0	.	90	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36229065	36229065	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NBEA	NM_015678	exon53	c.T8046C	p.C2682C	ACATTGTTTTGTG	.	92.0	4.0	127.0	0.0	.	340	.	.	Atlas-SNP
SUPT20H	55578	hgsc.bcm.edu	hg19	13	37586423	37586423	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_017569	exon24	c.A2007G	p.Q669Q	TGAACCTTGCTCA	.	50.0	5.0	53.0	0.0	.	.	.	.	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	hg19	13	42306265	42306265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_015058	exon22	c.T2453C	p.L818P	GGCTGAAGCGTAA	.	32.0	4.0	51.0	0.0	.	.	.	.	Atlas-SNP
KPNA3	3839	hgsc.bcm.edu	hg19	13	50285129	50285129	+	Silent	SNP	T	T	C	rs370734199		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KPNA3	NM_002267	exon11	c.A801G	p.S267S	CAAGTATGACAGA	.	68.0	4.0	100.0	0.0	.	53	.	.	Atlas-SNP
PIBF1	10464	hgsc.bcm.edu	hg19	13	73401963	73401963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PIBF1	NM_006346	exon8	c.T1008C	p.H336H	TGCTCATGAAGAG	.	50.0	4.0	73.0	0.0	.	65	.	.	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	hg19	13	102047689	102047689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NALCN	NM_052867	exon3	c.G136T	p.A46S	TGATGGCACAGAT	.	64.0	4.0	89.0	0.0	.	431	.	.	Atlas-SNP
TEX29	121793	hgsc.bcm.edu	hg19	13	111995257	111995257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_152324	exon5	c.A394G	p.S132G	ATGAAGAGTGACG	.	52.0	4.0	68.0	0.0	.	.	.	.	Atlas-SNP
LAMP1	3916	hgsc.bcm.edu	hg19	13	113973926	113973926	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LAMP1	NM_005561	exon5	c.C705T	p.S235S	GGCCAGCATGGGG	.	35.0	4.0	43.0	0.0	.	41	.	.	Atlas-SNP
OR4K14	122740	hgsc.bcm.edu	hg19	14	20482991	20482991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR4K14	NM_001004712	exon1	c.A362G	p.Y121C	CTGTCATAGGCCA	.	86.0	4.0	124.0	0.0	.	86	.	.	Atlas-SNP
OR6S1	341799	hgsc.bcm.edu	hg19	14	21109228	21109228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR6S1	NM_001001968	exon1	c.T623C	p.L208P	ATGACGAGGGAGG	.	46.0	4.0	67.0	0.0	.	49	.	.	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	hg19	14	23310816	23310816	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MMP14	NM_004995	exon2	c.A225G	p.Q75Q	CTTGCAAGTAACA	.	44.0	4.0	48.0	0.0	.	40	.	.	Atlas-SNP
DHRS2	10202	hgsc.bcm.edu	hg19	14	24112421	24112421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	DHRS2_ENST00000344777,NS,carcinoma,0,2	DHRS2	NM_182908	exon5	c.G481A	p.E161K	TACATGGAGAACA	.	58.0	3.0	85.0	0.0	.	78	.	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24533482	24533482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC16B	NM_138360	exon32	c.A3007G	p.N1003D	CAGGAGAATGGGA	.	56.0	4.0	51.0	0.0	.	120	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33293955	33293955	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP6	NM_004274	exon13	c.A6936G	p.K2312K	TGAAAAACGACAT	.	111.0	5.0	137.0	0.0	.	308	.	.	Atlas-SNP
KIAA0391	9692	hgsc.bcm.edu	hg19	14	35596745	35596745	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA0391	NM_014672	exon4	c.T1095C	p.Y365Y	AGAATATGAATGT	.	92.0	4.0	110.0	0.0	.	35	.	.	Atlas-SNP
RALGAPA1	253959	hgsc.bcm.edu	hg19	14	36017712	36017712	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RALGAPA1	NM_014990	exon41	c.6134+2T>C	.	TGTCTTACCTTCA	.	91.0	4.0	120.0	0.0	.	289	.	.	Atlas-SNP
CLEC14A	161198	hgsc.bcm.edu	hg19	14	38724408	38724408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CLEC14A,NS,carcinoma,0,1	CLEC14A	NM_175060	exon1	c.G820T	p.A274S	CCGTAGCACATTC	.	59.0	3.0	74.0	0.0	.	83	.	.	Atlas-SNP
METTL21D	79609	hgsc.bcm.edu	hg19	14	50583176	50583176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	METTL21D	NM_024558	exon1	c.A95G	p.Q32R	CTATACTGCTGTA	.	84.0	4.0	98.0	0.0	.	11	.	.	Atlas-SNP
DHRS7	51635	hgsc.bcm.edu	hg19	14	60619873	60619873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DHRS7	NM_016029	exon4	c.T417C	p.G139G	CATTCCACCATTG	.	102.0	5.0	123.0	0.0	.	31	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64630170	64630170	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SYNE2	NM_182914	exon89	c.C16350A	p.S5450S	AAATTCCAGTGTC	.	97.0	4.0	106.0	0.0	.	577	.	.	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	hg19	14	75301993	75301993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YLPM1	NM_019589	exon20	c.A6320G	p.K2107R	AAGAGAAGAAGGA	.	100.0	4.0	106.0	0.0	.	298	.	.	Atlas-SNP
POMT2	29954	hgsc.bcm.edu	hg19	14	77765880	77765880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	POMT2	NM_013382	exon7	c.G841A	p.A281T	CACGAGCAGTCAG	.	124.0	5.0	95.0	0.0	.	47	.	.	Atlas-SNP
FOXN3	1112	hgsc.bcm.edu	hg19	14	89878687	89878687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FOXN3	NM_005197	exon2	c.T134C	p.L45P	TCAGGCAGAGAAA	.	83.0	4.0	92.0	0.0	.	78	.	.	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91369167	91369167	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPS6KA5	NM_182398	exon9	c.T1104C	p.S368S	CTTCTCAGAACTC	.	125.0	5.0	168.0	0.0	.	135	.	.	Atlas-SNP
GPR68	8111	hgsc.bcm.edu	hg19	14	91700443	91700443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR68	NM_001177676	exon2	c.G952A	p.E318K	AGGCCTCCCTGGC	.	23.0	6.0	18.0	0.0	.	32	.	.	Atlas-SNP
SERPINA11	256394	hgsc.bcm.edu	hg19	14	94914957	94914957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SERPINA11	NM_001080451	exon2	c.C155T	p.P52L	ATGGTGGGTGTGA	.	92.0	4.0	96.0	0.0	.	53	.	.	Atlas-SNP
TCL1B	9623	hgsc.bcm.edu	hg19	14	96157133	96157133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TCL1B	NM_004918	exon2	c.T223C	p.S75P	CTACTCTCCTCCG	.	95.0	6.0	76.0	0.0	.	30	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102551266	102551266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.,1	HSP90AA1	NM_001017963	exon6	c.A1099G	p.K367E	TTTCTTTTTCTTC	.	189.0	9.0	249.0	0.0	.	65	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102551269	102551269	+	Missense_Mutation	SNP	C	C	T	rs3208444		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HSP90AA1	NM_001017963	exon6	c.G1096A	p.E366K	CTTTTTCTTCTTC	.	186.0	11.0	246.0	0.0	.	65	.	.	Atlas-SNP
GPR132	29933	hgsc.bcm.edu	hg19	14	105517339	105517339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR132	NM_013345	exon4	c.T1135C	p.S379P	AGCAGGACTCCTC	.	99.0	5.0	124.0	0.0	.	40	.	.	Atlas-SNP
MKRN3	7681	hgsc.bcm.edu	hg19	15	23811668	23811668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	MKRN3,right_upper_lobe,carcinoma,0,1	MKRN3	NM_005664	exon1	c.G739A	p.A247T	TATTATGCTTCCA	.	66.0	3.0	69.0	0.0	.	155	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28493786	28493786	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HERC2	NM_004667	exon21	c.T3147C	p.A1049A	CAATGAAGCAGAT	.	82.0	4.0	125.0	0.0	.	501	.	.	Atlas-SNP
FAM189A1	23359	hgsc.bcm.edu	hg19	15	29488731	29488731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	FAM189A1,colon,carcinoma,0,1	FAM189A1	NM_015307	exon4	c.A425G	p.E142G	TGCAGCTCACAGC	.	109.0	5.0	111.0	1.0	.	20	.	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	hg19	15	33359640	33359640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FMN1	NM_001103184	exon1	c.A446G	p.D149G	TCAGAGTCAGAAT	.	94.0	5.0	124.0	0.0	.	174	.	.	Atlas-SNP
PGBD4	161779	hgsc.bcm.edu	hg19	15	34395101	34395101	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PGBD4	NM_152595	exon1	c.A369G	p.E123E	TAGAGAAACAAAT	.	78.0	4.0	118.0	0.0	.	58	.	.	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	hg19	15	34640689	34640689	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C15orf55	NM_175741	exon2	c.G536A	p.W179X	AAGCTTGGCCAGG	.	56.0	4.0	63.0	0.0	.	110	.	.	Atlas-SNP
C15orf41	84529	hgsc.bcm.edu	hg19	15	37001438	37001438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C15orf41	NM_001130010	exon9	c.C559A	p.R187S	CAGCTTCGTGCAA	.	93.0	4.0	153.0	0.0	.	24	.	.	Atlas-SNP
EXD1	161829	hgsc.bcm.edu	hg19	15	41482300	41482300	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EXD1	NM_152596	exon9	c.A717G	p.R239R	AACAGGTCGGATG	.	90.0	4.0	98.0	0.0	.	52	.	.	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	hg19	15	41819624	41819624	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RPAP1	NM_015540	exon12	c.C1608A	p.I536I	TACCTTGATGACA	.	96.0	4.0	117.0	0.0	.	111	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42167762	42167762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTBN5	NM_016642	exon22	c.T4076C	p.L1359P	CCTTGAAGCCTGG	.	97.0	4.0	117.0	0.0	.	171	.	.	Atlas-SNP
TMEM87A	25963	hgsc.bcm.edu	hg19	15	42531866	42531866	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM87A	NM_015497	exon9	c.684+2T>C	.	TCACTTACAATCA	.	82.0	4.0	99.0	0.0	.	56	.	.	Atlas-SNP
HYPK	25764	hgsc.bcm.edu	hg19	15	44093963	44093963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_016400	exon4	c.A349G	p.M117V	GAACACATGGGCA	.	97.0	4.0	81.0	0.0	.	.	.	.	Atlas-SNP
SHF	90525	hgsc.bcm.edu	hg19	15	45467612	45467612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHF	NM_138356	exon4	c.T457C	p.S153P	CCTTGGAGCCCCG	.	75.0	4.0	75.0	0.0	.	27	.	.	Atlas-SNP
SQRDL	58472	hgsc.bcm.edu	hg19	15	45965905	45965905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SQRDL	NM_021199	exon5	c.A560G	p.E187G	TCAAAGAGGGCAA	.	109.0	5.0	130.0	0.0	.	27	.	.	Atlas-SNP
DTWD1	56986	hgsc.bcm.edu	hg19	15	49935632	49935632	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DTWD1	NM_001144955	exon5	c.C772T	p.L258L	TACTTTCTGGTAG	.	220.0	13.0	255.0	0.0	.	22	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54529885	54529885	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC13C	NM_001080534	exon5	c.A3225G	p.E1075E	TGAGGAACTGGTA	.	82.0	4.0	112.0	0.0	.	674	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54707196	54707196	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC13C	NM_001080534	exon17	c.A4864T	p.N1622Y	GAGCTGAACATGG	.	111.0	5.0	125.0	0.0	.	674	.	.	Atlas-SNP
TPM1	7168	hgsc.bcm.edu	hg19	15	63349281	63349281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TPM1	NM_001018007	exon3	c.T338C	p.L113P	AGAAGCTGGAGGA	.	84.0	4.0	86.0	0.0	.	59	.	.	Atlas-SNP
ANKDD1A	348094	hgsc.bcm.edu	hg19	15	65219192	65219192	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ANKDD1A	NM_182703	exon6	c.A564G	p.K188K	TGTCAAAGACAAG	.	63.0	4.0	112.0	0.0	.	47	.	.	Atlas-SNP
CILP	8483	hgsc.bcm.edu	hg19	15	65499173	65499173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CILP	NM_003613	exon4	c.A371G	p.Q124R	GGCCGCTGCTCCC	.	45.0	4.0	60.0	0.0	.	124	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68599732	68599732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITGA11	NM_001004439	exon28	c.A3335G	p.Q1112R	TGGAACTGCCTCT	.	86.0	6.0	88.0	0.0	.	110	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72119321	72119321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO9A	NM_006901	exon42	c.G7247A	p.R2416Q	TGCTTTCGCAACT	.	59.0	7.0	59.0	0.0	.	203	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	hg19	15	85327556	85327556	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ZNF592,NS,carcinoma,0,1	ZNF592	NM_014630	exon4	c.G1650T	p.L550L	CCCACTGATTGTA	.	63.0	3.0	103.0	0.0	.	95	.	.	Atlas-SNP
SLC28A1	9154	hgsc.bcm.edu	hg19	15	85476374	85476374	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC28A1	NM_004213	exon13	c.1084-2A>G	.	TCTTGCAGATCGA	.	121.0	5.0	173.0	0.0	.	118	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88423565	88423565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NTRK3	NM_001012338	exon19	c.G2270A	p.G757E	ATCACCCCGAAGC	.	131.0	6.0	167.0	0.0	.	587	.	.	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91328233	91328233	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BLM	NM_000057	exon14	c.T2745C	p.A915A	CGCTGCTCTTGCT	.	84.0	4.0	99.0	0.0	.	122	.	.	Atlas-SNP
FES	2242	hgsc.bcm.edu	hg19	15	91434318	91434318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FES	NM_002005	exon11	c.A1427G	p.H476R	TGGTGCACTCTGG	.	104.0	5.0	91.0	0.0	.	102	.	.	Atlas-SNP
UNC45A	55898	hgsc.bcm.edu	hg19	15	91491925	91491925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UNC45A	NM_018671	exon13	c.G1779A	p.L593L	AGCGCTGGTGAAC	.	93.0	4.0	88.0	0.0	.	57	.	.	Atlas-SNP
ARRDC4	91947	hgsc.bcm.edu	hg19	15	98512600	98512600	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARRDC4	NM_183376	exon5	c.T873C	p.Y291Y	GGACTATTCCTTA	.	89.0	4.0	121.0	0.0	.	30	.	.	Atlas-SNP
CCNF	899	hgsc.bcm.edu	hg19	16	2503452	2503452	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCNF	NM_001761	exon15	c.A1629G	p.T543T	AGTGACACAAGAC	.	65.0	4.0	70.0	0.0	.	110	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3799678	3799678	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CREBBP	NM_004380	exon21	c.T3786C	p.I1262I	CTTTGAAATTGTC	.	123.0	5.0	114.0	0.0	.	546	.	.	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4164949	4164949	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ADCY9	NM_001116	exon2	c.C495A	p.T165T	CAGCTTGGTGAAG	.	50.0	4.0	70.0	0.0	.	151	.	.	Atlas-SNP
VASN	114990	hgsc.bcm.edu	hg19	16	4432547	4432547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VASN	NM_138440	exon2	c.C1669T	p.P557S	ACACCCCCAGCCG	.	46.0	4.0	34.0	0.0	.	21	.	.	Atlas-SNP
PPL	5493	hgsc.bcm.edu	hg19	16	4942072	4942072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPL	NM_002705	exon15	c.A1793G	p.E598G	AGGTGCTCGTATT	.	88.0	4.0	105.0	0.0	.	168	.	.	Atlas-SNP
TXNDC11	51061	hgsc.bcm.edu	hg19	16	11785663	11785663	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TXNDC11	NM_015914	exon8	c.A1383G	p.P461P	GCACTGTGGCACG	.	93.0	4.0	77.0	0.0	.	75	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18849391	18849391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMG1	NM_015092	exon45	c.A7358G	p.E2453G	TCCATCTCTCTCT	.	123.0	5.0	144.0	0.0	.	401	.	.	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	hg19	16	22926348	22926348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	HS3ST2,colon,carcinoma,0,1	HS3ST2	NM_006043	exon2	c.G569T	p.R190L	CTCGACGCATCTT	.	64.0	3.0	80.0	0.0	.	59	.	.	Atlas-SNP
ZNF689	115509	hgsc.bcm.edu	hg19	16	30615611	30615611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF689	NM_138447	exon3	c.T1477C	p.S493P	GACTGGAGCCCCC	.	84.0	4.0	85.0	0.0	.	48	.	.	Atlas-SNP
RNF40	9810	hgsc.bcm.edu	hg19	16	30783507	30783507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RNF40	NM_014771	exon19	c.A2825G	p.Y942C	AGGAGTACAAGGT	.	88.0	4.0	101.0	0.0	.	83	.	.	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31384577	31384577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ITGAX	NM_000887	exon20	c.T2374C	p.S792P	TTGAAGTCCCTGC	.	99.0	4.0	128.0	0.0	.	198	.	.	Atlas-SNP
ZNF843	283933	hgsc.bcm.edu	hg19	16	31447207	31447207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF843	NM_001136509	exon2	c.T964C	p.S322P	GGTTCGAGGGCGG	.	81.0	6.0	83.0	0.0	.	14	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31927484	31927484	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF267	NM_003414	exon4	c.C1914T	p.G638G	ATGTGGCAAAGCC	.	69.0	4.0	92.0	0.0	.	94	.	.	Atlas-SNP
CYLD	1540	hgsc.bcm.edu	hg19	16	50818357	50818357	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	CYLD,right_upper_lobe,carcinoma,0,1	CYLD	NM_015247	exon13	c.G1944A	p.L648L	TCCTCTGAGAATG	.	47.0	2.0	62.0	0.0	.	150	.	.	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	hg19	16	56924197	56924197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC12A3	NM_001126108	exon19	c.A2297G	p.D766G	CCTTTGATTTCAA	.	89.0	4.0	91.0	0.0	.	99	.	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	hg19	16	57067552	57067552	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NLRC5	NM_032206	exon11	c.A2514G	p.K838K	GAGGAAAGGGGCT	.	70.0	4.0	67.0	0.0	.	186	.	.	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	hg19	16	57998104	57998104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CNGB1	NM_001297	exon4	c.A220G	p.T74A	CCTTGGTCTCTGG	.	89.0	4.0	83.0	0.0	.	105	.	.	Atlas-SNP
LRRC29	26231	hgsc.bcm.edu	hg19	16	67241508	67241508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC29	NM_001004055	exon6	c.A672G	p.X224W	CTGGCCTCAGAGT	.	53.0	4.0	61.0	0.0	.	13	.	.	Atlas-SNP
CTCF	10664	hgsc.bcm.edu	hg19	16	67644896	67644896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CTCF	NM_006565	exon3	c.T161C	p.V54A	AGGATGTCAACAG	.	56.0	4.0	80.0	0.0	.	193	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67918040	67918040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	EDC4,NS,carcinoma,0,1	EDC4	NM_014329	exon29	c.A4195G	p.S1399G	ACCCCCAGCCTCC	.	39.0	2.0	36.0	0.0	.	101	.	.	Atlas-SNP
NFATC3	4775	hgsc.bcm.edu	hg19	16	68208375	68208375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFATC3	NM_173163	exon6	c.T1873C	p.F625L	TCTAATTTTCTTC	.	74.0	4.0	104.0	0.0	.	190	.	.	Atlas-SNP
CHTF8	54921	hgsc.bcm.edu	hg19	16	69154536	69154536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHTF8	NM_001039690	exon4	c.T158C	p.I53T	CCCACGATCAGCA	.	79.0	4.0	90.0	0.0	.	5	.	.	Atlas-SNP
NIP7	51388	hgsc.bcm.edu	hg19	16	69375544	69375544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NIP7	NM_016101	exon5	c.A532G	p.T178A	GAAGAGACGTTGA	.	84.0	5.0	137.0	0.0	.	20	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74528672	74528672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GLG1	NM_001145667	exon6	c.T1036C	p.S346P	TCATGGATTCTTC	.	88.0	4.0	94.0	0.0	.	106	.	.	Atlas-SNP
ZFP1	162239	hgsc.bcm.edu	hg19	16	75203861	75203861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZFP1	NM_153688	exon4	c.A853G	p.T285A	CTCACCACACACC	.	81.0	4.0	118.0	0.0	.	28	.	.	Atlas-SNP
WWOX	51741	hgsc.bcm.edu	hg19	16	78466543	78466543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WWOX	NM_016373	exon8	c.C950T	p.T317M	GGGTCACGTCGAA	.	129.0	6.0	179.0	0.0	.	98	.	.	Atlas-SNP
DNAAF1	123872	hgsc.bcm.edu	hg19	16	84199541	84199541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DNAAF1	NM_178452	exon7	c.A1016G	p.E339G	AGAGAGAGAGTCA	.	94.0	4.0	116.0	0.0	.	81	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88499778	88499778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF469	NM_001127464	exon2	c.T5816C	p.L1939P	CAACTCTCCCTGC	.	54.0	4.0	52.0	0.0	.	121	.	.	Atlas-SNP
MVD	4597	hgsc.bcm.edu	hg19	16	88721665	88721665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MVD	NM_002461	exon7	c.T839C	p.I280T	CAGGAGATGGCAT	.	119.0	5.0	98.0	0.0	.	27	.	.	Atlas-SNP
FAM57A	79850	hgsc.bcm.edu	hg19	17	644578	644578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	FAM57A,NS,carcinoma,0,1	FAM57A	NM_024792	exon5	c.G542A	p.G181E	TGAATGGAATCCT	.	115.0	5.0	213.0	2.0	.	17	.	.	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	2202373	2202373	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMG6	NM_017575	exon2	c.T1674C	p.P558P	AGGTAGAGGGCTA	.	84.0	5.0	170.0	0.0	.	97	.	.	Atlas-SNP
OR1E2	8388	hgsc.bcm.edu	hg19	17	3336727	3336727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OR1E2	NM_003554	exon1	c.T409C	p.F137L	GGAGGAAGCAGAT	.	116.0	6.0	260.0	0.0	.	25	.	.	Atlas-SNP
SPATA22	84690	hgsc.bcm.edu	hg19	17	3365782	3365782	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPATA22	NM_032598	exon5	c.T324C	p.G108G	CCTCCAACCACCC	.	64.0	4.0	122.0	0.0	.	49	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3917468	3917468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZZEF1	NM_015113	exon51	c.T8329C	p.Y2777H	AGCGGTAATACAG	.	85.0	5.0	156.0	0.0	.	195	.	.	Atlas-SNP
CAMTA2	23125	hgsc.bcm.edu	hg19	17	4883056	4883056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CAMTA2	NM_001171167	exon9	c.A1630G	p.I544V	CAGGGATGCTTGG	.	42.0	4.0	91.0	0.0	.	93	.	.	Atlas-SNP
FAM64A	54478	hgsc.bcm.edu	hg19	17	6352638	6352638	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM64A	NM_019013	exon4	c.T597C	p.S199S	CGAGTCTGACAGT	.	85.0	4.0	134.0	0.0	.	20	.	.	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6367544	6367544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PITPNM3	NM_031220	exon16	c.T2102C	p.V701A	CGCGGCACATTGT	.	63.0	4.0	100.0	0.0	.	91	.	.	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6386875	6386875	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PITPNM3	NM_031220	exon6	c.T549C	p.C183C	GGCAGGACAGGGG	.	83.0	4.0	200.0	0.0	.	91	.	.	Atlas-SNP
TMEM95	339168	hgsc.bcm.edu	hg19	17	7259191	7259191	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM95	NM_198154	exon3	c.T261C	p.Y87Y	TTCATATTGGAGT	.	72.0	4.0	130.0	0.0	.	11	.	.	Atlas-SNP
TMEM102	284114	hgsc.bcm.edu	hg19	17	7340050	7340050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMEM102	NM_178518	exon3	c.C752T	p.P251L	CAAAGCCGTCGGA	.	72.0	4.0	105.0	0.0	.	11	.	.	Atlas-SNP
ALOXE3	59344	hgsc.bcm.edu	hg19	17	8011902	8011902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ALOXE3	NM_001165960	exon13	c.T1964C	p.V655A	TCTGAGACAAAGC	.	58.0	4.0	82.0	0.0	.	145	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18063265	18063265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO15A	NM_016239	exon55	c.A9320G	p.E3107G	ACCATGAGGTCAT	.	66.0	4.0	95.0	0.0	.	268	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	hg19	17	20108053	20108053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPECC1	NM_001033553	exon4	c.G691A	p.E231K	CTTGAGGAGAAGA	.	87.0	7.0	87.0	0.0	.	100	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27025001	27025001	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SUPT6H	NM_003170	exon32	c.A4401G	p.E1467E	CAAGGAACTGCCC	.	58.0	4.0	47.0	0.0	.	165	.	.	Atlas-SNP
RAB34	83871	hgsc.bcm.edu	hg19	17	27042082	27042082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RAB34	NM_001142625	exon9	c.A746G	p.K249R	TCAGCCTTCATCT	.	70.0	4.0	86.0	0.0	.	44	.	.	Atlas-SNP
PIPOX	51268	hgsc.bcm.edu	hg19	17	27371932	27371932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PIPOX	NM_016518	exon2	c.A170G	p.K57R	TCCGAAAGGCGTA	.	114.0	5.0	147.0	0.0	.	42	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27414105	27414105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MYO18A	NM_078471	exon38	c.A5561T	p.K1854M	GTCAGCTTCTCCA	.	144.0	52.0	174.0	0.0	.	217	.	.	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	33925250	33925250	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AP2B1	NM_001282	exon3	c.A39G	p.G13G	TGCAGGAGAAATA	.	85.0	4.0	110.0	0.0	.	70	.	.	Atlas-SNP
CCL5	6352	hgsc.bcm.edu	hg19	17	34205643	34205643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCL5	NM_002985	exon2	c.A77G	p.Y26C	GAGGAATCTGGAA	.	75.0	4.0	112.0	0.0	.	6	.	.	Atlas-SNP
GRB7	2886	hgsc.bcm.edu	hg19	17	37901211	37901211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GRB7	NM_001242442	exon9	c.T1054C	p.W352R	ACCTGCTGGCTGG	.	83.0	4.0	84.0	0.0	.	48	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38179530	38179530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MED24	NM_014815	exon20	c.C2104T	p.P702S	TGGGGGGCAGCAG	.	94.0	20.0	128.0	0.0	.	89	.	.	Atlas-SNP
KRT19	3880	hgsc.bcm.edu	hg19	17	39680207	39680207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRT19	NM_002276	exon6	c.T991C	p.F331L	CTCCAAAGCGCGC	.	121.0	5.0	96.0	0.0	.	41	.	.	Atlas-SNP
CCR10	2826	hgsc.bcm.edu	hg19	17	40831707	40831707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCR10	NM_016602	exon2	c.G953A	p.R318H	TCCTGGCGGAAGC	.	63.0	20.0	59.0	0.0	.	7	.	.	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	hg19	17	43516846	43516846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PLEKHM1	NM_014798	exon11	c.T3056C	p.V1019A	TACCTGACTGTGG	.	101.0	5.0	145.0	0.0	.	69	.	.	Atlas-SNP
NPEPPS	9520	hgsc.bcm.edu	hg19	17	45679095	45679095	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NPEPPS	NM_006310	exon15	c.A1722G	p.K574K	TGTCAAACCAGAC	.	118.0	5.0	147.0	0.0	.	59	.	.	Atlas-SNP
TBX21	30009	hgsc.bcm.edu	hg19	17	45822240	45822240	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBX21	NM_013351	exon6	c.C1116T	p.D372D	CCCCGACCTTCCT	.	66.0	4.0	75.0	0.0	.	50	.	.	Atlas-SNP
NFE2L1	4779	hgsc.bcm.edu	hg19	17	46128683	46128683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFE2L1	NM_003204	exon2	c.A203G	p.H68R	GTATCCACCCCAA	.	81.0	4.0	99.0	0.0	.	60	.	.	Atlas-SNP
NFE2L1	4779	hgsc.bcm.edu	hg19	17	46136184	46136184	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NFE2L1	NM_003204	exon6	c.T1500C	p.S500S	CTCTTCTTCCTCC	.	87.0	4.0	71.0	0.0	.	60	.	.	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	hg19	17	47677854	47677854	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPOP	NM_001007228	exon10	c.G1011A	p.G337G	CTTCCACCCAGAG	.	82.0	4.0	89.0	0.0	.	91	.	.	Atlas-SNP
SPAG9	9043	hgsc.bcm.edu	hg19	17	49072445	49072445	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPAG9	NM_001130528	exon18	c.T2199C	p.S733S	ATCTAAACTACTC	.	79.0	4.0	97.0	0.0	.	151	.	.	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	hg19	17	51901222	51901222	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIF2B	NM_032559	exon1	c.C828T	p.N276N	CTCCAACGAGTTG	.	112.0	36.0	102.0	0.0	.	254	.	.	Atlas-SNP
TRIM25	7706	hgsc.bcm.edu	hg19	17	54969476	54969476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRIM25	NM_005082	exon9	c.A1478G	p.Q493R	AACCTCTGGGGAT	.	72.0	4.0	79.0	0.0	.	52	.	.	Atlas-SNP
MKS1	54903	hgsc.bcm.edu	hg19	17	56290446	56290446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MKS1	NM_017777	exon8	c.A755G	p.E252G	TCCGTCTCAATCC	.	53.0	4.0	74.0	0.0	.	100	.	.	Atlas-SNP
LPO	4025	hgsc.bcm.edu	hg19	17	56345321	56345321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LPO	NM_006151	exon13	c.T2105C	p.L702P	ACAAGCTGGACCT	.	77.0	4.0	105.0	0.0	.	73	.	.	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	hg19	17	56586080	56586080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MTMR4	NM_004687	exon6	c.T416C	p.L139P	TCGGTCAGCCCCA	.	86.0	26.0	118.0	0.0	.	91	.	.	Atlas-SNP
C17orf64	124773	hgsc.bcm.edu	hg19	17	58508620	58508620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C17orf64	NM_181707	exon6	c.A704G	p.E235G	AGACTGAACCGTA	.	84.0	5.0	109.0	0.0	.	19	.	.	Atlas-SNP
BCAS3	54828	hgsc.bcm.edu	hg19	17	58756812	58756812	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	BCAS3	.	.	.	.	GGAAACAGGTTTT	.	73.0	4.0	79.0	0.0	.	90	.	.	Atlas-SNP
INTS2	57508	hgsc.bcm.edu	hg19	17	59981858	59981858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INTS2	NM_020748	exon9	c.T1294C	p.S432P	AAAAGGAAAGTGA	.	94.0	4.0	129.0	0.0	.	89	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61560881	61560881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACE	NM_000789	exon10	c.A1548G	p.G516G	TGCTGGAGCTAAG	.	106.0	5.0	156.0	0.0	.	187	.	.	Atlas-SNP
FTSJ3	117246	hgsc.bcm.edu	hg19	17	61902423	61902423	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FTSJ3	NM_017647	exon8	c.T696C	p.T232T	CTTCTTAGTAACC	.	86.0	5.0	98.0	0.0	.	63	.	.	Atlas-SNP
SMARCD2	6603	hgsc.bcm.edu	hg19	17	61914400	61914400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SMARCD2	NM_001098426	exon4	c.G449A	p.R150Q	AGCTCCCGGATCT	.	71.0	4.0	77.0	0.0	.	29	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62022142	62022142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	SCN4A,colon,carcinoma,0,1	SCN4A	NM_000334	exon21	c.A3803G	p.N1268S	TAGAGGTTCACCT	.	90.0	5.0	108.0	1.0	.	205	.	.	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	hg19	17	66873815	66873815	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon31	c.A3924G	p.L1308L	TTTCAGTAGCACC	.	62.0	4.0	95.0	0.0	.	213	.	.	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	hg19	17	66890418	66890418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA8	NM_007168	exon21	c.A2812G	p.R938G	TCAATCTTTTGGC	.	80.0	4.0	71.0	0.0	.	213	.	.	Atlas-SNP
ARMC7	79637	hgsc.bcm.edu	hg19	17	73124841	73124841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.,1	ARMC7	NM_024585	exon3	c.T305C	p.L102P	TCCCACTCATCAT	.	119.0	6.0	122.0	1.0	.	14	.	.	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77075681	77075681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ENGASE	NM_001042573	exon4	c.G527C	p.W176S	TGGGCTGGACCAA	.	124.0	52.0	123.0	0.0	.	55	.	.	Atlas-SNP
SLC38A10	124565	hgsc.bcm.edu	hg19	17	79234066	79234066	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC38A10	NM_001037984	exon11	c.G1260A	p.L420L	CTTCATCAAACCC	.	50.0	17.0	63.0	0.0	.	133	.	.	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	hg19	17	80828170	80828170	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TBCD	NM_005993	exon14	c.C1389A	p.V463V	CAACGTCAGGGAC	.	97.0	6.0	90.0	0.0	.	94	.	.	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	hg19	18	8718463	8718463	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_015210	exon3	c.A15G	p.R5R	GATGAGAGACAGT	.	93.0	4.0	125.0	0.0	.	.	.	.	Atlas-SNP
PPP4R1	9989	hgsc.bcm.edu	hg19	18	9593834	9593834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PPP4R1	NM_001042388	exon4	c.A227G	p.E76G	CAGACTTCCCTCA	.	91.0	4.0	89.0	0.0	.	63	.	.	Atlas-SNP
GNAL	2774	hgsc.bcm.edu	hg19	18	11862404	11862404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GNAL	NM_182978	exon6	c.A733G	p.R245G	CTGGAAAGAATCG	.	76.0	6.0	88.0	0.0	.	59	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19095396	19095396	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GREB1L	NM_001142966	exon29	c.A4920G	p.G1640G	AGTAGGAGTTTCC	.	66.0	4.0	79.0	0.0	.	69	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19100757	19100757	+	Missense_Mutation	SNP	G	G	C	rs373460361		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GREB1L	NM_001142966	exon32	c.G5581C	p.D1861H	GGTGCTGATCTTA	.	196.0	12.0	225.0	0.0	.	69	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19100763	19100763	+	Missense_Mutation	SNP	A	A	C	rs201565664	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GREB1L	NM_001142966	exon32	c.A5587C	p.K1863Q	GATCTTAAGAAAT	.	174.0	12.0	198.0	0.0	.	69	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23915177	23915177	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAF4B	NM_005640	exon13	c.A2298G	p.L766L	GAGATTAAAGCAG	.	96.0	4.0	119.0	0.0	.	71	.	.	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	hg19	18	29790544	29790544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEP1B	NM_005925	exon10	c.C1000A	p.P334T	CTGTACCCTAAAA	.	58.0	25.0	82.0	0.0	.	54	.	.	Atlas-SNP
C18orf54	162681	hgsc.bcm.edu	hg19	18	51889221	51889221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C18orf54	NM_173529	exon4	c.A670G	p.K224E	ATGAAAAAGGATG	.	81.0	4.0	101.0	0.0	.	40	.	.	Atlas-SNP
RNF152	220441	hgsc.bcm.edu	hg19	18	59483299	59483299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RNF152	NM_173557	exon2	c.T398C	p.V133A	ATGGTCACCACGG	.	68.0	4.0	107.0	0.0	.	37	.	.	Atlas-SNP
PHLPP1	23239	hgsc.bcm.edu	hg19	18	60642674	60642674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHLPP1	NM_194449	exon16	c.T3800C	p.L1267P	CTGTCCTTTGTCA	.	141.0	6.0	145.0	0.0	.	164	.	.	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72998514	72998514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TSHZ1	NM_005786	exon2	c.A1017G	p.K339K	TCAGAAAGCAGCG	.	66.0	5.0	97.0	0.0	.	104	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758323	758323	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C19orf21	NM_173481	exon2	c.T1377C	p.T459T	TGCGACTTCACCA	.	81.0	4.0	75.0	0.0	.	56	.	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1043779	1043779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ABCA7	NM_019112	exon10	c.A986G	p.E329G	TGTGGGAGATGCT	.	62.0	8.0	76.0	0.0	.	174	.	.	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	hg19	19	5041177	5041177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM4B	NM_015015	exon5	c.A347G	p.D116G	ACTTTGATGACCT	.	92.0	4.0	126.0	0.0	.	120	.	.	Atlas-SNP
SAFB	6294	hgsc.bcm.edu	hg19	19	5654111	5654111	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SAFB	NM_002967	exon12	c.A1566G	p.K522K	CAGAAAAGATGAT	.	66.0	4.0	91.0	0.0	.	74	.	.	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	hg19	19	6853046	6853046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VAV1	NM_005428	exon25	c.T2288C	p.F763S	TGCAGTTCCCCTT	.	95.0	5.0	107.0	0.0	.	140	.	.	Atlas-SNP
INSR	3643	hgsc.bcm.edu	hg19	19	7267868	7267868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	INSR	NM_000208	exon2	c.T140C	p.L47S	TCATGCAACCTAG	.	68.0	4.0	69.0	0.0	.	265	.	.	Atlas-SNP
PCP2	126006	hgsc.bcm.edu	hg19	19	7696666	7696666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCP2	NM_174895	exon4	c.T320C	p.L107P	GGACTGAGGGTCC	.	99.0	7.0	78.0	0.0	.	6	.	.	Atlas-SNP
HNRNPM	4670	hgsc.bcm.edu	hg19	19	8550522	8550522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HNRNPM	NM_005968	exon14	c.A1210G	p.M404V	GAGAGGATGGGTC	.	74.0	4.0	62.0	0.0	.	61	.	.	Atlas-SNP
ZNF699	374879	hgsc.bcm.edu	hg19	19	9406618	9406618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF699	NM_198535	exon5	c.T1462C	p.S488P	GGGATGAGGAACG	.	94.0	4.0	136.0	0.0	.	67	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11560105	11560105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRKCSH	NM_002743	exon17	c.A1465G	p.T489A	AAAGAGACCATGG	.	89.0	5.0	72.0	0.0	.	55	.	.	Atlas-SNP
ZNF844	284391	hgsc.bcm.edu	hg19	19	12186579	12186579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF844	NM_001136501	exon4	c.A644G	p.H215R	TTATACATGAACG	.	92.0	4.0	138.0	0.0	.	69	.	.	Atlas-SNP
CD97	976	hgsc.bcm.edu	hg19	19	14516617	14516617	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CD97	NM_078481	exon14	c.C1687T	p.L563L	TGCCTGCTGCTGT	.	85.0	4.0	107.0	0.0	.	86	.	.	Atlas-SNP
SLC1A6	6511	hgsc.bcm.edu	hg19	19	15067448	15067448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC1A6	NM_005071	exon6	c.G1009A	p.G337S	GCTGACCCCCCAG	.	84.0	8.0	109.0	0.0	.	111	.	.	Atlas-SNP
AKAP8	10270	hgsc.bcm.edu	hg19	19	15472941	15472941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP8	NM_005858	exon10	c.A1282G	p.K428E	CGGTCTTGTCGGG	.	74.0	4.0	77.0	0.0	.	68	.	.	Atlas-SNP
RASAL3	64926	hgsc.bcm.edu	hg19	19	15565287	15565287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RASAL3	NM_022904	exon13	c.T2045C	p.V682A	ATGGCTACCTGGT	.	128.0	6.0	130.0	0.0	.	49	.	.	Atlas-SNP
RASAL3	64926	hgsc.bcm.edu	hg19	19	15569377	15569377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RASAL3	NM_022904	exon7	c.T752C	p.L251P	GGGTGCAGTGGCC	.	95.0	6.0	113.0	0.0	.	49	.	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16952755	16952755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIN3B	NM_015260	exon4	c.C558A	p.F186L	GTCATTCCTGGAG	.	143.0	6.0	168.0	0.0	.	90	.	.	Atlas-SNP
OCEL1	79629	hgsc.bcm.edu	hg19	19	17339715	17339715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OCEL1	NM_024578	exon6	c.A776G	p.E259G	ACAGCGAGGGCTC	.	19.0	4.0	22.0	0.0	.	20	.	.	Atlas-SNP
TM6SF2	53345	hgsc.bcm.edu	hg19	19	19381177	19381177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TM6SF2	NM_001001524	exon3	c.T274C	p.F92L	CCATGAAGCCCAC	.	90.0	4.0	102.0	0.0	.	39	.	.	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	hg19	19	19650506	19650506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CILP2	NM_153221	exon2	c.A83G	p.E28G	CCGAGGAGCCAAT	.	99.0	4.0	105.0	0.0	.	84	.	.	Atlas-SNP
ZNF506	440515	hgsc.bcm.edu	hg19	19	19917871	19917871	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF506	NM_001099269	exon2	c.T10C	p.L4L	ATTGCAATGGTCC	.	87.0	4.0	112.0	0.0	.	36	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299777	21299777	+	Missense_Mutation	SNP	G	G	A	rs111443257	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF714	NM_182515	exon5	c.G307A	p.E103K	GGTTATGAACTAA	.	256.0	14.0	291.0	0.0	.	121	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22154522	22154522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ZNF208_ENST00000428290,colon,carcinoma,0,3	ZNF208	NM_007153	exon4	c.G3314A	p.R1105K	TGAATTCTCTTAT	.	92.0	7.0	63.0	0.0	.	817	.	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22363103	22363103	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF676	NM_001001411	exon3	c.T1416C	p.A472A	CTCTGCAGCATGA	.	73.0	4.0	93.0	0.0	.	146	.	.	Atlas-SNP
CEBPA	1050	hgsc.bcm.edu	hg19	19	33793069	33793069	+	Silent	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEBPA	NM_004364	exon1	c.C252T	p.H84H	CCGGCTGTGCTGG	.	74.0	4.0	66.0	0.0	.	986	.	.	Atlas-SNP
HAMP	57817	hgsc.bcm.edu	hg19	19	35775715	35775715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HAMP	NM_021175	exon2	c.A114G	p.Q38Q	GCTGCAACCCCAG	.	81.0	4.0	98.0	0.0	.	14	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36221615	36221615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	MLL4,NS,carcinoma,0,2	MLL4	NM_014727	exon26	c.C5284A	p.R1762S	TGCTCCCGTCTGT	.	58.0	4.0	83.0	0.0	.	229	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36223465	36223465	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MLL4	NM_014727	exon28	c.A6015G	p.E2005E	CCAGGAAGAGATT	.	77.0	7.0	91.0	0.0	.	229	.	.	Atlas-SNP
SIRT2	22933	hgsc.bcm.edu	hg19	19	39389044	39389044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIRT2	NM_012237	exon2	c.A38G	p.Q13R	CCTGCCTGGGTCT	.	89.0	4.0	73.0	0.0	.	29	.	.	Atlas-SNP
PAF1	54623	hgsc.bcm.edu	hg19	19	39880716	39880716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PAF1	NM_019088	exon3	c.C163A	p.Q55K	TGTTCTGGTCGAA	.	79.0	4.0	90.0	0.0	.	43	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42874933	42874933	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MEGF8	NM_001271938	exon40	c.A7086G	p.K2362K	GGAGAAATGCGAG	.	80.0	4.0	66.0	0.0	.	358	.	.	Atlas-SNP
TEX101	83639	hgsc.bcm.edu	hg19	19	43920080	43920080	+	Silent	SNP	C	C	T	rs149972012	bycluster	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TEX101	NM_031451	exon5	c.C63T	p.T21T	GGGAACCCCTCGT	.	158.0	70.0	192.0	0.0	.	28	.	C|1.000;T|0.000	Atlas-SNP
ZNF223	7766	hgsc.bcm.edu	hg19	19	44571110	44571110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF223	NM_013361	exon5	c.T1129C	p.C377R	GACAAGTGTGGGA	.	86.0	4.0	142.0	0.0	.	61	.	.	Atlas-SNP
ZNF180	7733	hgsc.bcm.edu	hg19	19	44983588	44983588	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF180	NM_013256	exon4	c.A246G	p.T82T	CTCCCGTGTGAAG	.	92.0	4.0	133.0	0.0	.	103	.	.	Atlas-SNP
CEACAM20	125931	hgsc.bcm.edu	hg19	19	45015089	45015089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CEACAM20	NM_001102597	exon12	c.A1736G	p.E579G	CATACCTCATAGA	.	124.0	5.0	137.0	0.0	.	31	.	.	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	hg19	19	45493763	45493763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CLPTM1	NM_001294	exon10	c.A1243G	p.T415A	AACGAGACCAACT	.	123.0	5.0	131.0	0.0	.	109	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	hg19	19	48305720	48305720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	TPRX1,NS,carcinoma,0,1	TPRX1	NM_198479	exon2	c.A548T	p.N183I	CCTGGGTTTGGGC	.	67.0	7.0	89.0	2.0	.	46	.	.	Atlas-SNP
LMTK3	114783	hgsc.bcm.edu	hg19	19	49001397	49001397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LMTK3	NM_001080434	exon12	c.G3016A	p.G1006R	GCTCCCCATTCTC	.	122.0	5.0	160.0	0.0	.	125	.	.	Atlas-SNP
VSTM1	284415	hgsc.bcm.edu	hg19	19	54545427	54545427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	VSTM1	NM_198481	exon6	c.A511G	p.K171E	ACCTCTTGGTGGA	.	92.0	4.0	123.0	0.0	.	30	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55597306	55597306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EPS8L1	NM_133180	exon15	c.A1483G	p.S495G	AACAGCAGTGAGC	.	100.0	4.0	68.0	0.0	.	122	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55697237	55697237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PTPRH	NM_002842	exon17	c.T2894C	p.L965P	TGGAGGAGCAGCA	.	88.0	5.0	100.0	0.0	.	139	.	.	Atlas-SNP
ZNF470	388566	hgsc.bcm.edu	hg19	19	57088312	57088312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF470	NM_001001668	exon6	c.A515G	p.D172G	AAAGAGATCACTC	.	132.0	6.0	156.0	0.0	.	103	.	.	Atlas-SNP
ZIM2	23619	hgsc.bcm.edu	hg19	19	57286250	57286250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZIM2	NM_015363	exon11	c.A1390G	p.R464G	AGGCTCTCTCTCC	.	79.0	4.0	86.0	0.0	.	511	.	.	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	hg19	19	57839824	57839824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF543	NM_213598	exon4	c.A994G	p.I332V	TACATCATCCACA	.	67.0	4.0	98.0	0.0	.	61	.	.	Atlas-SNP
A1BG	1	hgsc.bcm.edu	hg19	19	58863849	58863849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	A1BG	NM_130786	exon4	c.T413C	p.V138A	CGGCACACTGCTG	.	78.0	4.0	67.0	0.0	.	40	.	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	hg19	20	5903053	5903053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CHGB	NM_001819	exon4	c.A263G	p.D88G	TAAGAGACCCAGC	.	116.0	5.0	121.0	0.0	.	112	.	.	Atlas-SNP
SPTLC3	55304	hgsc.bcm.edu	hg19	20	13071736	13071736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SPTLC3	NM_018327	exon5	c.T613A	p.L205M	GGCACCTTGGATA	.	158.0	53.0	201.0	0.0	.	78	.	.	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	hg19	20	15967784	15967784	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MACROD2	NM_080676	exon15	c.A1134G	p.E378E	CCAAGAAGAAAAA	.	78.0	4.0	91.0	0.0	.	34	.	.	Atlas-SNP
GZF1	64412	hgsc.bcm.edu	hg19	20	23345920	23345920	+	Silent	SNP	A	A	G	rs146870841		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.,1	GZF1	NM_022482	exon1	c.A900G	p.E300E	GGAGGAAGAGGAG	.	74.0	3.0	69.0	0.0	.	61	.	A|1.000;G|0.000	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36851965	36851965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1755	NM_001029864	exon9	c.A2243G	p.K748R	TCGGCCTTCTCGA	.	82.0	4.0	94.0	0.0	.	145	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44685068	44685068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SLC12A5	NM_001134771	exon23	c.A3044G	p.E1015G	GGGAGGAGCCTGA	.	87.0	4.0	80.0	0.0	.	181	.	.	Atlas-SNP
STAU1	6780	hgsc.bcm.edu	hg19	20	47734536	47734536	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	STAU1	NM_017453	exon11	c.A1287G	p.G429G	ACTAACTCCTACA	.	86.0	5.0	113.0	0.0	.	54	.	.	Atlas-SNP
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51872705	51872705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TSHZ2	NM_173485	exon2	c.T2708C	p.V903A	CCAACGTCAAGTA	.	108.0	5.0	136.0	0.0	.	209	.	.	Atlas-SNP
CASS4	57091	hgsc.bcm.edu	hg19	20	55025710	55025710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CASS4	NM_020356	exon4	c.T617C	p.L206P	CAGGACTCCATCC	.	91.0	5.0	120.0	0.0	.	121	.	.	Atlas-SNP
EDN3	1908	hgsc.bcm.edu	hg19	20	57896094	57896094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EDN3	NM_207034	exon3	c.T388C	p.S130P	GGACTGTCCAACT	.	95.0	4.0	118.0	0.0	.	83	.	.	Atlas-SNP
COL9A3	1299	hgsc.bcm.edu	hg19	20	61460123	61460123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	COL9A3,right_lower_lobe,carcinoma,0,1	COL9A3	NM_001853	exon18	c.C908T	p.P303L	GCATGCCGGGCAA	.	56.0	4.0	59.0	0.0	.	70	.	.	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	hg19	20	61835049	61835049	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	YTHDF1	NM_017798	exon4	c.T243C	p.P81P	AATCGGAGGGTCC	.	102.0	5.0	124.0	0.0	.	66	.	.	Atlas-SNP
OPRL1	4987	hgsc.bcm.edu	hg19	20	62729930	62729930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	OPRL1	NM_000913	exon4	c.C891T	p.A297A	GACTGCCGTGGCC	.	96.0	38.0	104.0	0.0	.	47	.	.	Atlas-SNP
CXADR	1525	hgsc.bcm.edu	hg19	21	18933790	18933790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXADR	NM_001207066	exon6	c.A829G	p.I277V	CACGATATCAGGT	.	179.0	11.0	240.0	0.0	.	44	.	.	Atlas-SNP
KRTAP26-1	388818	hgsc.bcm.edu	hg19	21	31692292	31692292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRTAP26-1	NM_203405	exon1	c.A62C	p.H21P	GGAATATGGCGGG	.	109.0	16.0	136.0	0.0	.	58	.	.	Atlas-SNP
KRTAP27-1	643812	hgsc.bcm.edu	hg19	21	31709981	31709981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KRTAP27-1	NM_001077711	exon1	c.T6C	p.P2P	GCTATGAGGCATA	.	132.0	7.0	214.0	0.0	.	53	.	.	Atlas-SNP
C21orf62	56245	hgsc.bcm.edu	hg19	21	34166650	34166650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C21orf62	NM_001162495	exon4	c.A83G	p.K28R	CTGTTCTTCTGAC	.	98.0	5.0	140.0	0.0	.	26	.	.	Atlas-SNP
DONSON	29980	hgsc.bcm.edu	hg19	21	34957031	34957031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DONSON	NM_017613	exon4	c.G650T	p.S217I	ATAAGGCTCTGCT	.	100.0	4.0	134.0	0.0	.	34	.	.	Atlas-SNP
HLCS	3141	hgsc.bcm.edu	hg19	21	38309237	38309237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HLCS	NM_000411	exon5	c.T508C	p.S170P	AGTCGGAGCCCAC	.	95.0	4.0	157.0	0.0	.	64	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38573864	38573864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TTC3	NM_001001894	exon46	c.T6067C	p.S2023P	TCCTGCTCTTCTA	.	74.0	4.0	86.0	0.0	.	182	.	.	Atlas-SNP
ETS2	2114	hgsc.bcm.edu	hg19	21	40191431	40191431	+	Silent	SNP	T	T	C	rs457705	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	ETS2_ENST00000360214,NS,carcinoma,0,2	ETS2	NM_001256295	exon9	c.T1236C	p.T412T	AGGGACTCCCAAA	.	39.0	3.0	72.0	1.0	.	87	.	T|0.298;G|0.702	Atlas-SNP
TMPRSS3	64699	hgsc.bcm.edu	hg19	21	43808513	43808513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TMPRSS3	NM_001256317	exon5	c.A445G	p.S149G	CTTACCTTGGGAA	.	94.0	4.0	153.0	0.0	.	40	.	.	Atlas-SNP
PDE9A	5152	hgsc.bcm.edu	hg19	21	44174131	44174131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDE9A	NM_002606	exon10	c.T767C	p.L256P	AGGCCCTGCGGAA	.	52.0	4.0	49.0	0.0	.	69	.	.	Atlas-SNP
PKNOX1	5316	hgsc.bcm.edu	hg19	21	44430256	44430256	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PKNOX1	NM_004571	exon4	c.A273G	p.V91V	TGATGTAGACATC	.	53.0	4.0	66.0	0.0	.	40	.	.	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	hg19	21	44838374	44838374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SIK1	NM_173354	exon12	c.A1510G	p.S504G	CAGAGCTGGTTCC	.	69.0	5.0	85.0	0.0	.	65	.	.	Atlas-SNP
C21orf2	755	hgsc.bcm.edu	hg19	21	45755646	45755646	+	Silent	SNP	C	C	A	rs146104157	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C21orf2	NM_004928	exon3	c.G138T	p.T46T	CCTGAGCGTGATC	.	100.0	4.0	139.0	0.0	.	10	.	C|0.997;T|0.003	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	hg19	21	45833912	45833912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TRPM2	NM_003307	exon20	c.T3101C	p.L1034P	ACCTGCTCTTCAC	.	52.0	4.0	75.0	0.0	.	196	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47786943	47786943	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PCNT	NM_006031	exon15	c.A3054G	p.K1018K	GGAGAAACTGAAG	.	77.0	4.0	94.0	0.0	.	283	.	.	Atlas-SNP
CDC45	8318	hgsc.bcm.edu	hg19	22	19502321	19502321	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CDC45	NM_001178010	exon15	c.C1363T	p.L455L	AAGCAGCTGCGAG	.	59.0	4.0	74.0	0.0	.	48	.	.	Atlas-SNP
ZNF74	7625	hgsc.bcm.edu	hg19	22	20755034	20755034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF74	NM_003426	exon3	c.A233G	p.N78S	ACCAGAACCTTCT	.	123.0	5.0	157.0	0.0	.	54	.	.	Atlas-SNP
CCDC116	164592	hgsc.bcm.edu	hg19	22	21990761	21990761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCDC116	NM_152612	exon5	c.T1244C	p.L415P	AGCCGCTGCCCTC	.	68.0	4.0	94.0	0.0	.	56	.	.	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	hg19	22	26771552	26771552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SEZ6L	NM_021115	exon15	c.G2839T	p.A947S	GAAGCGGCAGCAG	.	64.0	26.0	114.0	0.0	.	174	.	.	Atlas-SNP
THOC5	8563	hgsc.bcm.edu	hg19	22	29917065	29917065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	THOC5	NM_001002878	exon14	c.T1199C	p.V400A	CTCAGGACTGAGT	.	93.0	4.0	92.0	0.0	.	58	.	.	Atlas-SNP
UQCR10	29796	hgsc.bcm.edu	hg19	22	30165668	30165668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	UQCR10	NM_013387	exon2	c.A152G	p.K51R	TGCAGAAGCTGTG	.	134.0	6.0	154.0	0.0	.	10	.	.	Atlas-SNP
PES1	23481	hgsc.bcm.edu	hg19	22	30975865	30975865	+	Silent	SNP	G	G	T	rs140808409	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PES1	NM_014303	exon12	c.C1227A	p.P409P	TGCCACGGGGAGA	.	81.0	6.0	79.0	0.0	.	55	.	G|0.980;A|0.020	Atlas-SNP
SMTN	6525	hgsc.bcm.edu	hg19	22	31487265	31487265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	SMTN_ENST00000404496,NS,carcinoma,+1,1	SMTN	NM_001207018	exon9	c.G1424T	p.R475L	GGGGGCGGGGCTT	.	37.0	2.0	37.0	0.0	.	219	.	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	hg19	22	32109192	32109192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PRR14L	NM_173566	exon4	c.A4633G	p.R1545G	AACTTCTGATTTT	.	85.0	4.0	92.0	0.0	.	198	.	.	Atlas-SNP
C22orf28	51493	hgsc.bcm.edu	hg19	22	32795593	32795593	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	C22orf28	NM_014306	exon6	c.T651C	p.P217P	TACCTGAGGAAGG	.	124.0	5.0	129.0	0.0	.	43	.	.	Atlas-SNP
HMGXB4	10042	hgsc.bcm.edu	hg19	22	35661108	35661108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	HMGXB4	NM_001003681	exon5	c.A727G	p.S243G	TTACAGAGCTTTC	.	132.0	16.0	142.0	0.0	.	52	.	.	Atlas-SNP
APOL3	80833	hgsc.bcm.edu	hg19	22	36537572	36537572	+	Silent	SNP	G	G	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	APOL3	NM_145640	exon3	c.C885A	p.I295I	GGCACGGATTTCA	.	83.0	4.0	91.0	0.0	.	60	.	.	Atlas-SNP
CSF2RB	1439	hgsc.bcm.edu	hg19	22	37334252	37334252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CSF2RB	NM_000395	exon14	c.C2402T	p.A801V	GCCCGGCAGATGT	.	51.0	4.0	54.0	0.0	.	104	.	.	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	hg19	22	37888763	37888763	+	Silent	SNP	C	C	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CARD10	NM_014550	exon17	c.G2523T	p.L841L	AGACACCAGTAGC	.	92.0	5.0	108.0	0.0	.	55	.	.	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	hg19	22	40415308	40415308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FAM83F	NM_138435	exon2	c.A626G	p.Q209R	TGTGTCAGGACCT	.	116.0	5.0	114.0	0.0	.	29	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41513713	41513713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	EP300	NM_001429	exon2	c.A617G	p.Q206R	ATATGCAGTACCC	.	73.0	5.0	115.0	0.0	.	367	.	.	Atlas-SNP
ACO2	50	hgsc.bcm.edu	hg19	22	41913597	41913597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ACO2	NM_001098	exon7	c.A902G	p.H301R	ACAACCACAGGAT	.	78.0	4.0	77.0	0.0	.	58	.	.	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51160246	51160246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SHANK3	NM_033517	exon21	c.T3943C	p.S1315P	GGCCCCTCGCCCA	.	23.0	4.0	53.0	0.0	.	96	.	.	Atlas-SNP
AKAP17A	8227	hgsc.bcm.edu	hg19	X	1712975	1712975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AKAP17A	NM_005088	exon2	c.T620C	p.F207S	ACACCTTCAGTTT	.	93.0	4.0	87.0	0.0	.	46	.	.	Atlas-SNP
ARSH	347527	hgsc.bcm.edu	hg19	X	2928166	2928166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ARSH	NM_001011719	exon2	c.T188C	p.L63P	CCTTCCTGACCGG	.	106.0	5.0	124.0	0.0	.	72	.	.	Atlas-SNP
GPR143	4935	hgsc.bcm.edu	hg19	X	9711666	9711666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR143	NM_000273	exon6	c.A706G	p.R236G	TCCTCCTCTCGTT	.	70.0	4.0	67.0	0.0	.	37	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12938298	12938298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TLR8	NM_138636	exon2	c.A1139G	p.Q380R	TGTTCCAGGAACT	.	59.0	4.0	63.0	0.0	.	134	.	.	Atlas-SNP
PIR	8544	hgsc.bcm.edu	hg19	X	15477841	15477841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PIR	NM_001018109	exon4	c.G212A	p.G71D	ATGCTGCCCCCTT	.	84.0	4.0	112.0	0.0	.	22	.	.	Atlas-SNP
PDK3	5165	hgsc.bcm.edu	hg19	X	24521601	24521601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PDK3	NM_005391	exon4	c.T478C	p.S160P	CGCATCTCTTTCC	.	98.0	4.0	115.0	0.0	.	86	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32366626	32366626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DMD	NM_004006	exon38	c.A5345G	p.E1782G	TCCAATTCCTTCA	.	74.0	5.0	106.0	0.0	.	2127	.	.	Atlas-SNP
SYN1	6853	hgsc.bcm.edu	hg19	X	47464463	47464463	+	Missense_Mutation	SNP	C	C	T	rs143341539		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	SYN1	NM_006950	exon5	c.G688A	p.A230T	TCTGGGCAAACTA	.	95.0	4.0	114.0	0.0	.	84	.	C|1.000;T|0.000	Atlas-SNP
ZNF182	7569	hgsc.bcm.edu	hg19	X	47842408	47842408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZNF182	NM_006962	exon6	c.T230C	p.L77P	AACTTGAGGATGA	.	75.0	4.0	81.0	0.0	.	117	.	.	Atlas-SNP
WDR13	64743	hgsc.bcm.edu	hg19	X	48458002	48458002	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	WDR13	NM_017883	exon4	c.A420G	p.S140S	CACGTCAGCAGCA	.	84.0	4.0	92.0	0.0	.	96	.	.	Atlas-SNP
USP27X	389856	hgsc.bcm.edu	hg19	X	49644929	49644929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	USP27X	NM_001145073	exon1	c.T19C	p.Y7H	TATGTATATGACA	.	56.0	4.0	92.0	0.0	.	25	.	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	hg19	X	50053332	50053332	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CCNB3	NM_033031	exon5	c.A2163G	p.E721E	GGAAGAAGAGTCC	.	177.0	8.0	194.0	0.0	.	367	.	.	Atlas-SNP
KDM5C	8242	hgsc.bcm.edu	hg19	X	53223019	53223019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KDM5C	NM_004187	exon24	c.G4053A	p.L1351L	ATTCTCCAGTAAG	.	79.0	4.0	93.0	0.0	.	385	.	.	Atlas-SNP
PHF8	23133	hgsc.bcm.edu	hg19	X	54011486	54011486	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	PHF8	NM_001184896	exon18	c.T2412C	p.S804S	AGCAGGACTGTTA	.	46.0	4.0	52.0	0.0	.	198	.	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54786268	54786268	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_198510	exon7	c.A996G	p.K332K	TCCAGCTTTCCAA	.	93.0	4.0	119.0	0.0	.	.	.	.	Atlas-SNP
ZC3H12B	340554	hgsc.bcm.edu	hg19	X	64709115	64709115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZC3H12B	NM_001010888	exon1	c.T434C	p.L145P	CAGAGCTTGTCAG	.	74.0	4.0	78.0	0.0	.	144	.	.	Atlas-SNP
FOXO4	4303	hgsc.bcm.edu	hg19	X	70320733	70320733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	FOXO4	NM_005938	exon2	c.T653C	p.V218A	CATCTGTGCTGCC	.	39.0	4.0	33.0	0.0	.	60	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70601683	70601683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	TAF1	NM_004606	exon9	c.A1511G	p.N504S	AGGACAATATCAT	.	70.0	4.0	110.0	0.0	.	439	.	.	Atlas-SNP
RGAG4	340526	hgsc.bcm.edu	hg19	X	71349868	71349868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	RGAG4	NM_001024455	exon1	c.A1523G	p.N508S	TTCTGGTTCCTCC	.	122.0	5.0	140.0	0.0	.	63	.	.	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	hg19	X	86069720	86069720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	DACH2	NM_053281	exon10	c.A1567G	p.K523E	AAGGAGAAAAAAA	.	46.0	4.0	41.0	0.0	.	263	.	.	Atlas-SNP
NXF3	56000	hgsc.bcm.edu	hg19	X	102339711	102339711	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NXF3	NM_022052	exon2	c.T129C	p.S43S	GGATGAAGAATGC	.	113.0	5.0	130.0	0.0	.	81	.	.	Atlas-SNP
SLC25A53	401612	hgsc.bcm.edu	hg19	X	103349276	103349276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	NM_001012755	exon2	c.G665A	p.G222E	ATTGTTCCATTGA	.	82.0	5.0	107.0	0.0	.	.	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108628445	108628445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GUCY2F	NM_001522	exon16	c.A3023G	p.N1008S	GCTGTGTTCACAG	.	99.0	4.0	97.0	0.0	.	178	.	.	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	hg19	X	112021881	112021881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AMOT	NM_001113490	exon11	c.T3169C	p.F1057L	AGTGGAACACAGG	.	79.0	4.0	89.0	0.0	.	204	.	.	Atlas-SNP
KLHL13	90293	hgsc.bcm.edu	hg19	X	117079481	117079481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KLHL13	NM_001168299	exon3	c.G165A	p.M55I	GAGGCCCATTTCG	.	97.0	4.0	126.0	0.0	.	87	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118284386	118284386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	KIAA1210	NM_020721	exon1	c.A157G	p.T53A	TGTAAGTCAACCA	.	87.0	5.0	88.0	0.0	.	171	.	.	Atlas-SNP
ZDHHC9	51114	hgsc.bcm.edu	hg19	X	128975901	128975901	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	ZDHHC9	NM_001008222	exon2	c.A21G	p.R7R	CTTCTTTCTCACC	.	103.0	6.0	112.0	0.0	.	41	.	.	Atlas-SNP
CXorf48	54967	hgsc.bcm.edu	hg19	X	134292208	134292208	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	CXorf48	NM_017863	exon4	c.A453G	p.L151L	AACTTCTAACAAG	.	98.0	4.0	97.0	0.0	.	17	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135430116	135430116	+	Silent	SNP	T	T	C	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	GPR112	NM_153834	exon6	c.T4251C	p.D1417D	TGTAGATACCACA	.	86.0	4.0	106.0	0.0	.	459	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	148069086	148069086	+	Silent	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	AFF2	NM_002025	exon20	c.A3813G	p.K1271K	AAACAAAGGTATG	.	97.0	4.0	124.0	0.0	.	679	.	.	Atlas-SNP
MTMR1	8776	hgsc.bcm.edu	hg19	X	149905886	149905886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	MTMR1	NM_003828	exon11	c.A1415G	p.K472R	TAGAAAAGGAGTG	.	88.0	4.0	103.0	0.0	.	82	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3745	3745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	.	ENST00000361390	exon1	c.G439A	p.A147T	ACCCTAGCCATCA	.	244.0	15.0	179.0	0.0	.	.	.	.	Atlas-SNP
LRRC8A	56262	hgsc.bcm.edu	hg19	9	131670854	131670855	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	LRRC8A	NM_001127244	exon3	c.1410_1411del	p.470_471del	.	.	40.0	11.0	68.0	0.0	.	69	.	.	Atlas-INDEL
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-DD-A119-01A-11D-A12Z-10	TCGA-DD-A119-10A-01D-A12Z-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	754b7a64-4a00-4461-a2e6-938ef1365f5d	91043a26-f026-4f25-86a7-7c7ab718c95b	.	NCAM1	NM_001242607	wholegene	.	.	.	.	32.0	32.0	1.0	1.0	.	372	.	.	Pindel
