Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AJAP1	55966	hgsc.bcm.edu	hg19	1	4772503	4772503	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AJAP1	NM_018836	exon2	c.C573G	p.A191A	GGAGGCCCTGGAG	.	29.0	11.0	10.0	0.0	.	68	.	.	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	hg19	1	11169374	11169374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MTOR	NM_004958	exon56	c.A7501T	p.I2501F	TGTTAATAATCTG	.	119.0	9.0	92.0	0.0	.	327	.	.	Atlas-SNP
HNRNPCL1	343069	hgsc.bcm.edu	hg19	1	12907351	12907351	+	Silent	SNP	A	A	G	rs2359485	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HNRNPCL1	NM_001013631	exon2	c.T792C	p.D264D	CTGGTCATCCCCC	.	192.0	29.0	103.0	0.0	.	68	.	A|0.500;G|0.500	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32151735	32151735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL16A1	NM_001856	exon28	c.G1841A	p.G614E	GGTGGCCCCTGCA	.	126.0	70.0	85.0	0.0	.	137	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35852772	35852772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZMYM4	NM_005095	exon12	c.C2005T	p.L669F	CAGCGTCTCGCTG	.	87.0	8.0	68.0	0.0	.	143	.	.	Atlas-SNP
COL8A2	1296	hgsc.bcm.edu	hg19	1	36565805	36565805	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	COL8A2	NM_005202	exon1	c.G39A	p.L13L	TAGCAGCAGCAGC	.	25.0	14.0	9.0	0.0	.	41	.	.	Atlas-SNP
INSL5	10022	hgsc.bcm.edu	hg19	1	67266850	67266850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	INSL5	NM_005478	exon1	c.G55T	p.E19X	GCACTTCTGAGAT	.	58.0	25.0	64.0	0.0	.	26	.	.	Atlas-SNP
ANKRD13C	81573	hgsc.bcm.edu	hg19	1	70740488	70740488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD13C	NM_030816	exon11	c.G1309C	p.G437R	CTCTACCCAGATG	.	141.0	26.0	79.0	0.0	.	36	.	.	Atlas-SNP
UBE2Q1	55585	hgsc.bcm.edu	hg19	1	154527970	154527970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	UBE2Q1	NM_017582	exon3	c.T471G	p.C157W	GAGTTTACACAGG	.	126.0	50.0	66.0	0.0	.	35	.	.	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	hg19	1	164781342	164781342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PBX1	NM_001204963	exon6	c.C953A	p.A318D	TGTCAGCCCATGG	.	180.0	26.0	87.0	0.0	.	60	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179631316	179631316	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TDRD5	NM_001199085	exon15	c.T2400A	p.P800P	GTTACCTCTACAG	.	76.0	43.0	36.0	0.0	.	149	.	.	Atlas-SNP
COLGALT2	23127	hgsc.bcm.edu	hg19	1	183944304	183944304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	GLT25D2,caecum,carcinoma,0,1	.	NM_015101	exon3	c.G419A	p.R140Q	GCAAACCGGGAGG	.	60.0	12.0	23.0	0.0	.	.	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207789962	207789962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CR1	NM_000651	exon41	c.A6704T	p.H2235L	GGAGACACACAGG	.	173.0	42.0	111.0	0.0	.	354	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228511096	228511096	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OBSCN	NM_001271223	exon67	c.C18312T	p.C6104C	TGACTGCGTGGTG	.	141.0	27.0	54.0	0.0	.	2142	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245862258	245862258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KIF26B	NM_018012	exon14	c.G6097A	p.A2033T	GTCCGCGCGAAGT	.	97.0	72.0	46.0	0.0	.	343	.	.	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	hg19	1	248112614	248112614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	OR2L8,NS,carcinoma,0,1	OR2L8	NM_001001963	exon1	c.C455A	p.S152X	TAGGCTCGATCAA	.	529.0	117.0	156.0	0.0	.	92	.	.	Atlas-SNP
OR2T33	391195	hgsc.bcm.edu	hg19	1	248436686	248436686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR2T33	NM_001004695	exon1	c.T431C	p.M144T	CACGACATGGTCA	.	650.0	177.0	175.0	0.0	.	133	.	.	Atlas-SNP
GRHL1	29841	hgsc.bcm.edu	hg19	2	10132262	10132262	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRHL1	NM_198182	exon11	c.G1449A	p.Q483Q	CTTGCAGCGGGGC	.	162.0	65.0	66.0	0.0	.	95	.	.	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32466120	32466120	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NLRC4	NM_001199138	exon5	c.G2332C	p.E778Q	CATCTTCTTCATT	.	130.0	14.0	54.0	0.0	.	165	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121726310	121726310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLI2	NM_005270	exon5	c.C664T	p.R222W	AGCCCGCGGGTGA	.	102.0	11.0	30.0	0.0	.	187	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141264466	141264466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	LRP1B	NM_018557	exon53	c.A8420C	p.E2807A	GCATTTTCATCAC	.	185.0	79.0	99.0	0.0	.	1315	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152552146	152552146	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NEB	NM_004543	exon18	c.C1620G	p.P540P	ATCAGGGGGGATA	.	167.0	16.0	111.0	0.0	.	1697	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179588199	179588199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon74	c.G21628A	p.V7210M	AAACCACACAGGT	.	118.0	38.0	93.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179638382	179638382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon32	c.G7401T	p.K2467N	TGACACCTTACAT	.	263.0	15.0	126.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179659228	179659228	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TTN	NM_001267550	exon8	c.C1296G	p.A432A	ATCAACGGCAGCA	.	100.0	38.0	71.0	0.0	.	18412	.	.	Atlas-SNP
TOP2B	7155	hgsc.bcm.edu	hg19	3	25665077	25665077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	TOP2B,caecum,carcinoma,0,1	TOP2B	NM_001068	exon21	c.C2641T	p.P881S	AGTTGGGTAGTTT	.	277.0	65.0	135.0	0.0	.	98	.	.	Atlas-SNP
OXSM	54995	hgsc.bcm.edu	hg19	3	25835782	25835782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OXSM	NM_017897	exon3	c.G1177T	p.V393F	GGGGCAGTCGAGG	.	122.0	18.0	89.0	0.0	.	54	.	.	Atlas-SNP
PRSS50	29122	hgsc.bcm.edu	hg19	3	46755769	46755769	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRSS50	NM_013270	exon4	c.C693T	p.D231D	CACATAGTCCGTG	.	86.0	61.0	50.0	0.0	.	35	.	.	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	hg19	3	47371491	47371491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL18	NM_025010	exon4	c.T452C	p.M151T	CAATGATGTGTGC	.	123.0	19.0	49.0	0.0	.	46	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49936589	49936589	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MST1R	NM_001244937	exon2	c.A1338G	p.V446V	GACCTGTACTGGT	.	109.0	12.0	63.0	0.0	.	205	.	.	Atlas-SNP
ATXN7	6314	hgsc.bcm.edu	hg19	3	63975996	63975996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATXN7	NM_000333	exon10	c.G1506T	p.E502D	AGAAGAGTCTGTT	.	110.0	19.0	57.0	0.0	.	126	.	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	hg19	3	64084858	64084858	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	PRICKLE2,NS,carcinoma,0,1	PRICKLE2	NM_198859	exon8	c.C2404A	p.R802R	CGTATCGCAGGCG	.	119.0	19.0	80.0	0.0	.	88	.	.	Atlas-SNP
GSK3B	2932	hgsc.bcm.edu	hg19	3	119635000	119635000	+	Nonsense_Mutation	SNP	G	G	A	rs201787969		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	GSK3B_ENST00000316626,NS,carcinoma,0,2	GSK3B	NM_002093	exon5	c.C499T	p.R167X	AACTTCGGAACAG	.	77.0	8.0	47.0	0.0	.	119	.	.	Atlas-SNP
DNAJB8	165721	hgsc.bcm.edu	hg19	3	128181899	128181899	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DNAJB8	NM_153330	exon3	c.C190T	p.L64L	CATACAGGGAGCG	.	120.0	14.0	56.0	0.0	.	34	.	.	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129303388	129303388	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PLXND1	NM_015103	exon6	c.C1869T	p.I623I	GCCCGAGATCTGC	.	92.0	41.0	35.0	0.0	.	149	.	.	Atlas-SNP
SLCO2A1	6578	hgsc.bcm.edu	hg19	3	133673915	133673915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLCO2A1	NM_005630	exon4	c.G520A	p.V174M	CAACCACCATCAG	.	131.0	56.0	59.0	0.0	.	72	.	.	Atlas-SNP
PHC3	80012	hgsc.bcm.edu	hg19	3	169846627	169846627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHC3	NM_024947	exon8	c.C1633G	p.Q545E	GGCCCTGGGACAG	.	86.0	31.0	64.0	0.0	.	113	.	.	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15601277	15601277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CC2D2A	NM_001080522	exon37	c.A4622G	p.D1541G	GAGAAGATGTAGA	.	273.0	20.0	109.0	0.0	.	158	.	.	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	hg19	4	23815325	23815325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPARGC1A	NM_013261	exon8	c.G1781T	p.R594I	GAGGATCTACTGC	.	52.0	9.0	52.0	0.0	.	129	.	.	Atlas-SNP
BEND4	389206	hgsc.bcm.edu	hg19	4	42145706	42145706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BEND4	NM_001159547	exon3	c.C793A	p.P265T	GGTTTGGAGTTGG	.	158.0	11.0	78.0	0.0	.	67	.	.	Atlas-SNP
HERC3	8916	hgsc.bcm.edu	hg19	4	89591339	89591339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC3	NM_014606	exon16	c.A1847T	p.E616V	TTCCTGAGATTTC	.	89.0	31.0	82.0	0.0	.	82	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126369855	126369855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G7684A	p.A2562T	AATAAGGCCGATT	.	25.0	12.0	42.0	0.0	.	1752	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126371628	126371628	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FAT4	NM_024582	exon9	c.G9457C	p.D3153H	GCTCTTGATTATG	.	67.0	11.0	75.0	0.0	.	1752	.	.	Atlas-SNP
MAP9	79884	hgsc.bcm.edu	hg19	4	156289738	156289738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP9	NM_001039580	exon5	c.G708T	p.E236D	GCTAACCTCAGGA	.	88.0	29.0	110.0	0.0	.	79	.	.	Atlas-SNP
CBR4	84869	hgsc.bcm.edu	hg19	4	169923357	169923357	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CBR4	NM_032783	exon5	c.401-1G>C	.	TGCTTCCTAGGAC	.	49.0	24.0	31.0	0.0	.	15	.	.	Atlas-SNP
EMB	133418	hgsc.bcm.edu	hg19	5	49724007	49724007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EMB	NM_198449	exon2	c.C167T	p.S56F	TCCAAGGAAAAGT	.	78.0	16.0	55.0	0.0	.	42	.	.	Atlas-SNP
MOCS2	4338	hgsc.bcm.edu	hg19	5	52405551	52405551	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS2	NM_176806	exon1	c.G9A	p.P3P	GCACAGCGGCACC	.	49.0	19.0	31.0	0.0	.	28	.	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	hg19	5	94025298	94025298	+	Missense_Mutation	SNP	G	G	T	rs367590507	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ANKRD32	NM_032290	exon18	c.G2406T	p.K802N	TCACAAGACTAAT	.	82.0	25.0	66.0	0.0	.	117	.	.	Atlas-SNP
GRAMD3	65983	hgsc.bcm.edu	hg19	5	125759319	125759319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GRAMD3	NM_001146321	exon1	c.T2C	p.M1T	GCAAGATGTGGAA	.	114.0	63.0	56.0	0.0	.	30	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134143603	134143603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DDX46	NM_014829	exon16	c.C2120T	p.A707V	ACAGAGCAGGGCG	.	90.0	24.0	77.0	0.0	.	77	.	.	Atlas-SNP
ARSI	340075	hgsc.bcm.edu	hg19	5	149677216	149677216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARSI	NM_001012301	exon2	c.G1271A	p.W424X	AGCTTCCACTCAC	.	66.0	24.0	35.0	0.0	.	65	.	.	Atlas-SNP
HDGFL1	154150	hgsc.bcm.edu	hg19	6	22570186	22570186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HDGFL1	NM_138574	exon1	c.G382A	p.E128K	GGCGACGAATTGG	.	94.0	38.0	28.0	0.0	.	33	.	.	Atlas-SNP
HIST1H2BD	3017	hgsc.bcm.edu	hg19	6	26158595	26158595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HIST1H2BD	NM_021063	exon1	c.C198T	p.F66F	TTCCTTCGTCAAC	.	202.0	26.0	106.0	0.0	.	45	.	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29574930	29574930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GABBR1	NM_001470	exon17	c.G2058T	p.W686C	GACCCACCAAATC	.	183.0	18.0	65.0	0.0	.	95	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	hg19	6	30954774	30954774	+	Missense_Mutation	SNP	G	G	C	rs41288649	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC21	NM_001010909	exon2	c.G822C	p.E274D	CTCTGAGTCCAGC	.	234.0	25.0	72.0	0.0	.	98	.	G|0.500;C|0.500	Atlas-SNP
HSPA1L	3305	hgsc.bcm.edu	hg19	6	31778842	31778842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HSPA1L	NM_005527	exon2	c.G908A	p.R303Q	TCAAATCGAGCTC	.	113.0	60.0	58.0	0.0	.	185	.	.	Atlas-SNP
HLA-DPB1	3115	hgsc.bcm.edu	hg19	6	33053656	33053656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-DPB1	NM_002121	exon4	c.G747T	p.R249S	CAGGAGGAGCAAG	.	116.0	8.0	51.0	0.0	.	28	.	.	Atlas-SNP
PPIL1	51645	hgsc.bcm.edu	hg19	6	36823793	36823793	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PPIL1	NM_016059	exon4	c.A297G	p.A99A	GGCCATTGCGAGA	.	63.0	35.0	28.0	0.0	.	6	.	.	Atlas-SNP
MOCS1	4337	hgsc.bcm.edu	hg19	6	39895091	39895091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MOCS1	NM_005943	exon1	c.T227C	p.L76P	TCTGTGAGGGAGA	.	101.0	17.0	33.0	0.0	.	87	.	.	Atlas-SNP
MAP3K5	4217	hgsc.bcm.edu	hg19	6	136913604	136913604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP3K5	NM_005923	exon22	c.T3027C	p.D1009D	CTTGACATCTCTT	.	99.0	16.0	66.0	0.0	.	136	.	.	Atlas-SNP
HGC6.3	0	hgsc.bcm.edu	hg19	6	168376895	168376895	+	Silent	SNP	G	G	A	rs372347044		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001129895	exon1	c.C438T	p.C146C	GAGAAGGCAGTGG	.	210.0	20.0	93.0	0.0	.	.	.	.	Atlas-SNP
AQP1	358	hgsc.bcm.edu	hg19	7	30951862	30951862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP1	NM_198098	exon1	c.C338T	p.S113L	TCCTCTCAGGCAT	.	82.0	10.0	15.0	0.0	.	38	.	.	Atlas-SNP
NPSR1	387129	hgsc.bcm.edu	hg19	7	34698055	34698055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	NPSR1_ENST00000359791,colon,carcinoma,0,3	NPSR1	NM_207172	exon1	c.G31A	p.D11N	AGCTTCGATTCCA	.	106.0	38.0	60.0	0.0	.	134	.	.	Atlas-SNP
AEBP1	165	hgsc.bcm.edu	hg19	7	44149823	44149823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AEBP1	NM_001129	exon11	c.C1278A	p.D426E	TGAGGACGACTAC	.	138.0	14.0	57.0	0.0	.	102	.	.	Atlas-SNP
BAZ1B	9031	hgsc.bcm.edu	hg19	7	72903721	72903721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BAZ1B	NM_032408	exon6	c.A694G	p.I232V	TGATGATCTAGGT	.	229.0	120.0	92.0	0.0	.	147	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82583266	82583266	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PCLO	NM_014510	exon5	c.T7003C	p.L2335L	CGGATAAGCTACT	.	360.0	82.0	120.0	0.0	.	1506	.	.	Atlas-SNP
RINT1	60561	hgsc.bcm.edu	hg19	7	105195558	105195558	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RINT1	NM_021930	exon11	c.C1555T	p.R519X	AGGATACGATTAA	.	123.0	8.0	68.0	0.0	.	65	.	.	Atlas-SNP
SPAM1	6677	hgsc.bcm.edu	hg19	7	123594436	123594436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAM1	NM_153189	exon3	c.C812T	p.P271L	AGTCTCCTGTAGC	.	107.0	12.0	71.0	0.0	.	195	.	.	Atlas-SNP
SLC13A4	26266	hgsc.bcm.edu	hg19	7	135390908	135390908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC13A4	NM_012450	exon4	c.G506A	p.G169D	GAGTTGCCCGCCA	.	108.0	13.0	41.0	0.0	.	56	.	.	Atlas-SNP
OR9A2	135924	hgsc.bcm.edu	hg19	7	142724155	142724155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR9A2	NM_001001658	exon1	c.T65G	p.L22R	TGGTGTAGTCCTT	.	146.0	51.0	82.0	0.0	.	52	.	.	Atlas-SNP
GALNTL5	168391	hgsc.bcm.edu	hg19	7	151664464	151664464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GALNTL5	NM_145292	exon2	c.G133A	p.A45T	CTGTCAGCTTGGT	.	170.0	116.0	97.0	0.0	.	87	.	.	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154760558	154760558	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAXIP1	NM_007349	exon7	c.A1353G	p.Q451Q	CTGCTGTTGCTGT	.	130.0	16.0	46.0	0.0	.	150	.	.	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154760561	154760561	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PAXIP1	NM_007349	exon7	c.G1350A	p.Q450Q	CTGTTGCTGTGAA	.	130.0	12.0	46.0	0.0	.	150	.	.	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	hg19	8	17421125	17421125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC7A2	NM_001164771	exon11	c.C1805A	p.P602Q	TCTTACCATTTTT	.	343.0	73.0	126.0	0.0	.	157	.	.	Atlas-SNP
SLC18A1	6570	hgsc.bcm.edu	hg19	8	20004896	20004896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC18A1	NM_003053	exon15	c.C1337A	p.S446Y	CCGGTGGATGGAC	.	79.0	13.0	54.0	0.0	.	68	.	.	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71039123	71039123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCOA2	NM_006540	exon19	c.G3841A	p.G1281S	GCATACCACTAGG	.	149.0	23.0	71.0	0.0	.	147	.	.	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	hg19	8	72233982	72233982	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	EYA1	NM_172059	exon5	c.C405A	p.G135G	GGAAATGCCGTAC	.	313.0	41.0	112.0	0.0	.	108	.	.	Atlas-SNP
PTDSS1	9791	hgsc.bcm.edu	hg19	8	97345763	97345763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTDSS1	NM_014754	exon13	c.C1391T	p.S464L	CCAAGTCAAAAGT	.	113.0	17.0	64.0	0.0	.	70	.	.	Atlas-SNP
ZC3H3	23144	hgsc.bcm.edu	hg19	8	144550407	144550407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	ZC3H3,NS,malignant_melanoma,0,1	ZC3H3	NM_015117	exon8	c.C2147A	p.P716H	GAGAAGGGGCAGG	.	58.0	20.0	24.0	0.0	.	75	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	hg19	8	145623090	145623090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CPSF1	NM_013291	exon21	c.C2078G	p.S693C	ACCTTGGACTGCT	.	41.0	10.0	15.0	0.0	.	92	.	.	Atlas-SNP
SH3GL2	6456	hgsc.bcm.edu	hg19	9	17795714	17795714	+	Silent	SNP	G	G	A	rs371297260		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SH3GL2	NM_003026	exon9	c.G1032A	p.V344V	TTATGTGGAAATT	.	277.0	59.0	109.0	0.0	.	60	.	.	Atlas-SNP
KLHL9	55958	hgsc.bcm.edu	hg19	9	21334288	21334288	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KLHL9	NM_018847	exon1	c.C571T	p.L191L	GTTTTAGAAACTC	.	40.0	9.0	42.0	0.0	.	61	.	.	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	hg19	9	111658811	111658811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	IKBKAP	NM_003640	exon25	c.G2701C	p.D901H	CCAAATCAAAGTC	.	93.0	31.0	82.0	0.0	.	122	.	.	Atlas-SNP
PRKCQ	5588	hgsc.bcm.edu	hg19	10	6553138	6553138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRKCQ	NM_006257	exon3	c.T137A	p.I46N	TTCTGGATATACA	.	98.0	46.0	98.0	0.0	.	113	.	.	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98743690	98743690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	C10orf12	NM_015652	exon1	c.G2543A	p.C848Y	GGAAATGTAGGAG	.	113.0	29.0	82.0	0.0	.	94	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1017945	1017945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MUC6	NM_005961	exon31	c.T4856C	p.F1619S	GTGGAGAAAGGTG	.	771.0	31.0	174.0	0.0	.	408	.	.	Atlas-SNP
TPH1	7166	hgsc.bcm.edu	hg19	11	18050909	18050909	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TPH1	NM_004179	exon6	c.471-1G>C	.	TCTCCACTAATGA	.	63.0	17.0	60.0	0.0	.	44	.	.	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18339305	18339305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HPS5	NM_181507	exon2	c.G101A	p.R34H	TTTAGACGACTGG	.	96.0	22.0	59.0	0.0	.	70	.	.	Atlas-SNP
PHF21A	51317	hgsc.bcm.edu	hg19	11	45975168	45975168	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PHF21A	NM_016621	exon10	c.A1005G	p.K335K	GTGAGATTTAACT	.	396.0	190.0	126.0	0.0	.	107	.	.	Atlas-SNP
OR4A16	81327	hgsc.bcm.edu	hg19	11	55111334	55111334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OR4A16	NM_001005274	exon1	c.C658A	p.L220I	GTCATCCTAAACT	.	342.0	76.0	138.0	0.0	.	120	.	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	hg19	11	55872714	55872714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	OR8H2,NS,carcinoma,0,1	OR8H2	NM_001005200	exon1	c.C196A	p.H66N	CTTACTCACCTGT	.	184.0	18.0	99.0	0.0	.	117	.	.	Atlas-SNP
PIWIL4	143689	hgsc.bcm.edu	hg19	11	94353216	94353216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PIWIL4	NM_152431	exon19	c.C2348A	p.T783N	GTCCTACCTACTA	.	89.0	13.0	88.0	0.0	.	70	.	.	Atlas-SNP
APOC3	345	hgsc.bcm.edu	hg19	11	116701502	116701502	+	Silent	SNP	C	C	T	rs372158089		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	APOC3	NM_000040	exon3	c.C69T	p.A23A	AGAGGCCGAGGAT	.	38.0	6.0	47.0	0.0	.	8	.	.	Atlas-SNP
ERC1	23085	hgsc.bcm.edu	hg19	12	1192560	1192560	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ERC1	NM_178039	exon3	c.G900C	p.Q300H	AAAGCAGACCCTA	.	38.0	9.0	49.0	0.0	.	95	.	.	Atlas-SNP
ESPL1	9700	hgsc.bcm.edu	hg19	12	53670586	53670586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ESPL1	NM_012291	exon8	c.A1883T	p.H628L	CCACCCACCTGGT	.	42.0	14.0	15.0	0.0	.	158	.	.	Atlas-SNP
SRGAP1	57522	hgsc.bcm.edu	hg19	12	64505683	64505683	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SRGAP1	NM_020762	exon17	c.C2061T	p.I687I	CATCATCATCCAC	.	150.0	18.0	96.0	0.0	.	146	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70954625	70954625	+	Missense_Mutation	SNP	C	C	G	rs112738980	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon17	c.G4258C	p.D1420H	AAAAGTCAAAGTC	.	138.0	15.0	90.0	0.0	.	676	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70984008	70984008	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PTPRB	NM_001109754	exon8	c.G1786C	p.D596H	CTTTGTCTGGAAC	.	227.0	25.0	99.0	0.0	.	676	.	.	Atlas-SNP
GLIPR1	11010	hgsc.bcm.edu	hg19	12	75875766	75875766	+	Silent	SNP	T	T	A	rs373244879	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	GLIPR1	NM_006851	exon2	c.T327A	p.S109S	TTTTTCTGTGTCT	.	143.0	32.0	77.0	0.0	.	33	.	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	129028648	129028648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TMEM132C	NM_001136103	exon3	c.G1121A	p.R374K	GCAACAGGTAAGC	.	25.0	15.0	16.0	0.0	.	142	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25435486	25435486	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RNF17	NM_031277	exon27	c.C3855T	p.P1285P	TATACCCCAGTTT	.	216.0	28.0	114.0	0.0	.	259	.	.	Atlas-SNP
SUPT20H	55578	hgsc.bcm.edu	hg19	13	37619483	37619483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_017569	exon6	c.G196A	p.E66K	GCTTCTCTAACAA	.	60.0	19.0	67.0	0.0	.	.	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39265592	39265592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FREM2	NM_207361	exon1	c.A4111G	p.T1371A	AATTTTACCCAGG	.	91.0	10.0	76.0	0.0	.	385	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60498943	60498943	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DIAPH3	NM_001042517	exon18	c.T2136G	p.L712L	AAACTTAAGTTCT	.	239.0	50.0	148.0	0.0	.	139	.	.	Atlas-SNP
ITGBL1	9358	hgsc.bcm.edu	hg19	13	102366888	102366888	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ITGBL1	NM_004791	exon10	c.T1380G	p.G460G	TGATGGTCTCATT	.	208.0	50.0	105.0	0.0	.	83	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25959333	25959333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP10A	NM_024490	exon10	c.G1832A	p.R611Q	AACCTCCGCAGGA	.	31.0	12.0	16.0	0.0	.	270	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28457606	28457606	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HERC2	NM_004667	exon43	c.A6910T	p.K2304X	CCTGTTTAGTCGA	.	921.0	162.0	185.0	0.0	.	501	.	.	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	hg19	15	41854881	41854881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TYRO3	NM_006293	exon4	c.G545A	p.G182E	TCGGGGGACCCGC	.	47.0	31.0	42.0	0.0	.	169	.	.	Atlas-SNP
CTDSPL2	51496	hgsc.bcm.edu	hg19	15	44811383	44811383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CTDSPL2	NM_016396	exon11	c.G1129A	p.E377K	TTCCGTGAACATT	.	109.0	27.0	75.0	0.0	.	31	.	.	Atlas-SNP
MYO1E	4643	hgsc.bcm.edu	hg19	15	59464100	59464100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MYO1E	NM_004998	exon22	c.C2476T	p.L826F	ACCTGAGGGACAC	.	87.0	19.0	49.0	0.0	.	99	.	.	Atlas-SNP
ATP2A1	487	hgsc.bcm.edu	hg19	16	28913552	28913552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ATP2A1	NM_004320	exon17	c.T2369C	p.V790A	TCCCGGTGCAGCT	.	135.0	44.0	58.0	0.0	.	116	.	.	Atlas-SNP
ZNF843	283933	hgsc.bcm.edu	hg19	16	31448157	31448157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF843	NM_001136509	exon2	c.C14T	p.P5L	GCAAAGGGGAGGC	.	41.0	10.0	15.0	0.0	.	14	.	.	Atlas-SNP
SPIRE2	84501	hgsc.bcm.edu	hg19	16	89924764	89924764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPIRE2	NM_032451	exon8	c.G1121T	p.C374F	TGCCCTGCATCCT	.	60.0	24.0	41.0	0.0	.	63	.	.	Atlas-SNP
PRDM7	11105	hgsc.bcm.edu	hg19	16	90126813	90126813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PRDM7	NM_001098173	exon9	c.G1169C	p.S390T	GCCATACTCATCC	.	181.0	63.0	122.0	0.0	.	53	.	.	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	hg19	17	2282393	2282393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SGSM2	NM_014853	exon23	c.C2963T	p.S988L	TCTCATCGGAGCA	.	155.0	60.0	114.0	0.0	.	60	.	.	Atlas-SNP
SPAG7	9552	hgsc.bcm.edu	hg19	17	4864100	4864100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SPAG7	NM_004890	exon2	c.A134G	p.K45R	TCCACTTTCTGTT	.	198.0	151.0	136.0	0.0	.	22	.	.	Atlas-SNP
TVP23C	201158	hgsc.bcm.edu	hg19	17	15449210	15449210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_145301	exon5	c.A351C	p.K117N	CACAGTTTTATTC	.	267.0	99.0	114.0	0.0	.	.	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18058480	18058480	+	Missense_Mutation	SNP	G	G	A	rs367717396	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	MYO15A,NS,carcinoma,0,1	MYO15A	NM_016239	exon45	c.G8281A	p.V2761M	CGGGCCGTGGTCA	.	48.0	25.0	19.0	0.0	.	268	.	.	Atlas-SNP
TOP3A	7156	hgsc.bcm.edu	hg19	17	18188782	18188782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TOP3A	NM_004618	exon14	c.C1650T	p.Y550Y	GCCCACGTACATC	.	169.0	82.0	63.0	0.0	.	85	.	.	Atlas-SNP
SMCR8	140775	hgsc.bcm.edu	hg19	17	18221376	18221376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SMCR8	NM_144775	exon1	c.G2273T	p.G758V	GCTATGGCTGCTA	.	101.0	26.0	53.0	0.0	.	62	.	.	Atlas-SNP
KRT35	3886	hgsc.bcm.edu	hg19	17	39635729	39635729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	KRT35	NM_002280	exon3	c.A581T	p.Q194L	ACCAGCTGCCGCA	.	184.0	16.0	75.0	0.0	.	58	.	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	hg19	17	60757607	60757607	+	Missense_Mutation	SNP	C	C	T	rs370911684	alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MRC2	NM_006039	exon15	c.C2375T	p.S792F	TGGCCTCCCTGCA	.	131.0	30.0	46.0	0.0	.	126	.	.	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	hg19	17	66873752	66873752	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ABCA8	NM_007168	exon31	c.G3987A	p.A1329A	CCACAGCGCGTTC	.	120.0	23.0	42.0	0.0	.	213	.	.	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	hg19	17	80136965	80136965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CCDC57	NM_198082	exon9	c.G1312A	p.E438K	CCCTTTCAATGTC	.	123.0	24.0	49.0	0.0	.	102	.	.	Atlas-SNP
ARHGAP28	79822	hgsc.bcm.edu	hg19	18	6887166	6887166	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ARHGAP28	NM_001010000	exon11	c.C987T	p.H329H	GCCTCACGTCAAA	.	106.0	27.0	91.0	0.0	.	181	.	.	Atlas-SNP
AQP4	361	hgsc.bcm.edu	hg19	18	24442273	24442273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AQP4	NM_001650	exon2	c.C320A	p.T107N	TTCCTGGTGCACA	.	51.0	13.0	37.0	0.0	.	27	.	.	Atlas-SNP
SLC25A23	79085	hgsc.bcm.edu	hg19	19	6458301	6458301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	SLC25A23	NM_024103	exon2	c.G191A	p.G64D	AGCCCGCCATCTG	.	13.0	12.0	13.0	0.0	.	43	.	.	Atlas-SNP
MAP1S	55201	hgsc.bcm.edu	hg19	19	17831786	17831786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	MAP1S	NM_018174	exon2	c.G160C	p.D54H	AACCTTGATGAAC	.	104.0	23.0	65.0	0.0	.	74	.	.	Atlas-SNP
PDCD2L	84306	hgsc.bcm.edu	hg19	19	34916969	34916969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PDCD2L	NM_032346	exon7	c.C1021G	p.P341A	CAGACTCCCATGG	.	67.0	23.0	67.0	0.0	.	27	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44739856	44739856	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF227	NM_182490	exon6	c.A1273T	p.I425F	TTTCACATCCATC	.	46.0	11.0	40.0	0.0	.	62	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53014087	53014087	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_001099694	exon6	c.T453A	p.P151P	CAAGCCTATTAAA	.	168.0	50.0	121.0	0.0	.	.	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53854648	53854648	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	ZNF845	NM_138374	exon4	c.G720A	p.A240A	AGGAGCGAAACAA	.	149.0	8.0	110.0	0.0	.	101	.	.	Atlas-SNP
TSEN34	79042	hgsc.bcm.edu	hg19	19	54695669	54695669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TSEN34	NM_024075	exon3	c.A341G	p.E114G	TCCTGGAGAAGAT	.	46.0	10.0	30.0	0.0	.	17	.	.	Atlas-SNP
DSN1	79980	hgsc.bcm.edu	hg19	20	35383170	35383170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DSN1	NM_001145315	exon10	c.G957A	p.Q319Q	ACCGAGCTGTACT	.	74.0	17.0	33.0	0.0	.	32	.	.	Atlas-SNP
BACH1	571	hgsc.bcm.edu	hg19	21	30699058	30699058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BACH1	NM_206866	exon3	c.G913A	p.E305K	AAATCAGAAGTGA	.	23.0	9.0	36.0	0.0	.	66	.	.	Atlas-SNP
AIRE	326	hgsc.bcm.edu	hg19	21	45712255	45712255	+	Missense_Mutation	SNP	C	C	T	rs376901046	bycluster	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	AIRE	NM_000383	exon9	c.C1066T	p.R356W	GAGCCCCGGCCCC	.	32.0	11.0	28.0	0.0	.	61	.	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21161719	21161719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	PI4KA	NM_058004	exon10	c.A1099G	p.T367A	AGGAAGTGTAGTA	.	54.0	28.0	45.0	0.0	.	313	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42607990	42607990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	TCF20	NM_181492	exon1	c.G3322C	p.V1108L	CAATTACTCCCTG	.	52.0	7.0	38.0	0.0	.	164	.	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	hg19	X	18622799	18622799	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDKL5	NM_003159	exon12	c.G1755A	p.L585L	TTCACTGTCTGCA	.	49.0	32.0	36.0	0.0	.	124	.	.	Atlas-SNP
FMR1NB	158521	hgsc.bcm.edu	hg19	X	147084806	147084806	+	Silent	SNP	A	A	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FMR1NB	NM_152578	exon2	c.A363C	p.A121A	TTCCGCATTGGAA	.	204.0	13.0	113.0	0.0	.	51	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	7330	7330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	ENST00000361624	exon1	c.T1427C	p.F476S	AAGCCTTCGCTTC	.	137.0	21.0	27.0	0.0	.	.	.	.	Atlas-SNP
FZD9	8326	hgsc.bcm.edu	hg19	7	72849249	72849250	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	FZD9	NM_003508	exon1	c.912_913insCAG	p.I304delinsIQ	.	.	110.0	20.0	36.0	0.0	.	51	.	.	Atlas-Indel,Pindel
MAATS1	89876	hgsc.bcm.edu	hg19	3	119421979	119421980	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	.	NM_033364	exon1	c.34_35insC	p.A12fs	.	.	95.0	11.0	34.0	0.0	.	.	.	.	Atlas-INDEL
ASXL2	55252	hgsc.bcm.edu	hg19	2	26101043	26101044	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	ASXL2_ENST00000435504,NS,carcinoma,0,1	ASXL2	NM_018263	exon1	c.49_50insC	p.A17fs	.	.	127.0	10.0	36.0	0.0	.	217	.	.	Atlas-INDEL
OPRL1	4987	hgsc.bcm.edu	hg19	20	62729669	62729676	+	Frame_Shift_Del	DEL	CTGGGGCC	CTGGGGCC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGGGGCC	CTGGGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	OPRL1	NM_000913	exon4	c.629_636del	p.210_212del	.	.	257.0	19.0	116.0	0.0	.	47	.	.	Atlas-Indel,Pindel
RETNLB	84666	hgsc.bcm.edu	hg19	3	108474715	108474716	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	RETNLB	NM_032579	exon3	c.246_247insG	p.C82fs	.	.	311.0	27.0	62.0	0.0	.	38	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7578454	7578455	+	In_Frame_Ins	INS	-	-	CGCGGA	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	TP53_ENST00000545858,bladder,carcinoma,0,1	TP53	NM_001126112	exon5	c.476_477insTCCGCG	p.A159delinsVRA	.	.	33.0	12.0	32.0	0.0	.	33396	.	.	Atlas-Indel,Pindel
DEPDC1	55635	hgsc.bcm.edu	hg19	1	68955231	68955232	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	DEPDC1	NM_017779	exon3	c.375_376insA	p.N125fs	.	.	333.0	29.0	157.0	0.0	.	102	.	.	Atlas-Indel,Pindel
USH2A	7399	hgsc.bcm.edu	hg19	1	216369968	216369974	+	Frame_Shift_Del	DEL	TTTCCTC	TTTCCTC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TTTCCTC	TTTCCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	USH2A,NS,carcinoma,0,1	USH2A	NM_206933	exon19	c.4173_4179del	p.1391_1393del	.	.	10.0	10.0	0.0	0.0	.	1168	.	.	Pindel
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136582246	136582439	+	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	BCLAF1	NM_014739	exon13	c.2758_3016del	p.920_921del	.	.	14.0	14.0	0.0	0.0	.	203	.	.	Pindel
QRICH2	84074	hgsc.bcm.edu	hg19	17	74288539	74288571	+	In_Frame_Del	DEL	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	CTGCACCAGGTGGGACCAAACCACGCTGATGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	QRICH2	NM_032134	exon4	c.1740_1772del	p.580_591del	.	.	12.0	12.0	0.0	0.0	.	143	.	.	Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	NCAM1	NM_001242607	wholegene	.	.	.	.	22.0	22.0	0.0	0.0	.	372	.	.	Pindel
CDC27	996	hgsc.bcm.edu	hg19	17	45234594	45234729	+	Frame_Shift_Del	DEL	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CDC27	NM_001114091	exon6	c.601_631del	p.201_211del	.	.	10.0	10.0	0.0	0.0	.	337	.	.	Pindel
CBWD6	644019	hgsc.bcm.edu	hg19	9	69256787	69256893	+	Frame_Shift_Del	DEL	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	-	novel		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	CACATTCCTCACTTCACTGAACAGCAGAGGCAACCGTTTCTAAGTTCCAGCCACTCTTCATAGAGCTCTCCACCTTGGCTGACAGCTAAGGATTTCTCCAGCGCACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CBWD6	NM_001085457	exon3	c.245_338del	p.82_113del	.	.	18.0	18.0	0.0	0.0	.	19	.	.	Pindel
CELA1	1990	hgsc.bcm.edu	hg19	12	51740405	51740433	+	In_Frame_Del	DEL	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	-	rs372974824	byfrequency;alternate_allele	TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	CELA1	NM_001971	exon1	c.8_16del	p.3_6del	.	.	20.0	20.0	0.0	0.0	.	39	.	-|0.574;CACCAGGAAGCG|0.426	Pindel
HLA-A	3105	hgsc.bcm.edu	hg19	6	29911899	29911900	+	Frame_Shift_Ins	INS	-	-	C	rs199474609		TCGA-DD-A11A-01A-11D-A12Z-10	TCGA-DD-A11A-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3387dbca-ef9a-4ffe-94f2-e002df056e64	926ba7c3-0c83-4e06-8ba2-ed15ba1f87a5	.	HLA-A	NM_002116	exon4	c.620_621insC	p.D207fs	.	.	17.0	17.0	0.0	0.0	.	89	.	.	Pindel
