Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
USP48	84196	hgsc.bcm.edu	hg19	1	22016544	22016544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	USP48	NM_032236	exon24	c.G2932A	p.D978N	TTCCATCAATTGA	.	301.0	107.0	96.0	0.0	.	91	.	.	Atlas-SNP
PARS2	25973	hgsc.bcm.edu	hg19	1	55223846	55223846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PARS2	NM_152268	exon2	c.G989A	p.G330D	GGTTTGCCACAGA	.	165.0	66.0	54.0	0.0	.	29	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144852472	144852472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDE4DIP	NM_014644	exon44	c.A7027G	p.T2343A	CTGGAGTACATGG	.	180.0	36.0	63.0	0.0	.	817	.	.	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	hg19	1	145528004	145528004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITGA10	NM_003637	exon3	c.G241C	p.A81P	GGGGGGGCCCACA	.	253.0	156.0	50.0	0.0	.	131	.	.	Atlas-SNP
CHD1L	9557	hgsc.bcm.edu	hg19	1	146714372	146714372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CHD1L	NM_004284	exon1	c.A19G	p.T7A	GGCGCTACTAGCC	.	38.0	14.0	9.0	0.0	.	72	.	.	Atlas-SNP
KIAA0907	22889	hgsc.bcm.edu	hg19	1	155899509	155899509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIAA0907	NM_014949	exon3	c.A378C	p.Q126H	CTCGTCTTGAGTC	.	219.0	68.0	59.0	0.0	.	58	.	.	Atlas-SNP
SSR2	6746	hgsc.bcm.edu	hg19	1	155988138	155988138	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SSR2	NM_003145	exon3	c.A177G	p.L59L	ATCAGATAGTTCC	.	94.0	33.0	30.0	0.0	.	20	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156640645	156640645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NES	NM_006617	exon4	c.G3335T	p.G1112V	AGATGGCCTGGGT	.	141.0	43.0	37.0	0.0	.	196	.	.	Atlas-SNP
DDR2	4921	hgsc.bcm.edu	hg19	1	162731029	162731029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DDR2	NM_001014796	exon10	c.G884T	p.G295V	CTAAAGGTGTGAA	.	307.0	71.0	83.0	0.0	.	228	.	.	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	hg19	1	164768965	164768965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PBX1	NM_001204963	exon4	c.G540T	p.M180I	CGTGATGAATCTC	.	211.0	68.0	56.0	0.0	.	60	.	.	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	hg19	1	166974345	166974345	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAEL	NM_032858	exon7	c.G681A	p.L227L	GTGTTTGAAGCAT	.	398.0	104.0	113.0	0.0	.	95	.	.	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172557990	172557990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_014283	exon18	c.G1749C	p.E583D	TCAAGAGGAGGAA	.	262.0	75.0	69.0	0.0	.	.	.	.	Atlas-SNP
TEX35	84066	hgsc.bcm.edu	hg19	1	178489807	178489807	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TEX35	NM_001170724	exon7	c.342-1G>C	.	CCCCCAGTCCCCT	.	105.0	22.0	38.0	0.0	.	15	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182443063	182443063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RGSL1	NM_001137669	exon6	c.G817T	p.D273Y	AAGCCAGATGCTA	.	200.0	67.0	66.0	0.0	.	111	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185950141	185950141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HMCN1	NM_031935	exon17	c.T2598G	p.I866M	CTATATTTGTGAA	.	204.0	51.0	64.0	0.0	.	797	.	.	Atlas-SNP
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204408086	204408086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PIK3C2B	NM_002646	exon24	c.C3493G	p.P1165A	CCCCAGGGTTGTG	.	111.0	22.0	43.0	0.0	.	142	.	.	Atlas-SNP
DSTYK	25778	hgsc.bcm.edu	hg19	1	205180511	205180511	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DSTYK	NM_199462	exon1	c.C153T	p.F51F	GCGGAAGAACTTC	.	30.0	12.0	8.0	0.0	.	87	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237580423	237580423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon11	c.C848T	p.A283V	GAGTTGCGTAAGT	.	177.0	68.0	57.0	0.0	.	1273	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237972285	237972285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RYR2	NM_001035	exon100	c.A14383G	p.K4795E	TACAATAAAAGTG	.	308.0	133.0	101.0	0.0	.	1273	.	.	Atlas-SNP
PREB	10113	hgsc.bcm.edu	hg19	2	27355507	27355507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREB	NM_013388	exon5	c.C716T	p.T239I	GAAAAGGTGGGTC	.	191.0	61.0	62.0	0.0	.	37	.	.	Atlas-SNP
RBKS	64080	hgsc.bcm.edu	hg19	2	28065967	28065967	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RBKS	NM_022128	exon5	c.T481C	p.L161L	CTTCCAAAGAAGT	.	151.0	44.0	56.0	0.0	.	23	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179475909	179475909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTN	NM_001267550	exon270	c.G50947C	p.V16983L	TTGGAACTGGGAC	.	151.0	77.0	64.0	0.0	.	18412	.	.	Atlas-SNP
EOMES	8320	hgsc.bcm.edu	hg19	3	27758974	27758974	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EOMES	NM_005442	exon6	c.A1648T	p.I550F	ATTTAATGCCATA	.	187.0	67.0	66.0	0.0	.	65	.	.	Atlas-SNP
APPL1	26060	hgsc.bcm.edu	hg19	3	57283493	57283493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APPL1	NM_012096	exon11	c.G969T	p.M323I	GGCCATGGACATA	.	162.0	66.0	77.0	0.0	.	59	.	.	Atlas-SNP
OSBPL11	114885	hgsc.bcm.edu	hg19	3	125295107	125295107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OSBPL11	NM_022776	exon5	c.G592T	p.V198F	GTCCAACATTAAA	.	196.0	74.0	84.0	0.0	.	64	.	.	Atlas-SNP
PLOD2	5352	hgsc.bcm.edu	hg19	3	145828234	145828234	+	Missense_Mutation	SNP	A	A	G	rs376517611	alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLOD2	NM_182943	exon4	c.T340C	p.F114L	CATCAAAGCTGTT	.	109.0	47.0	61.0	0.0	.	81	.	.	Atlas-SNP
MLF1	4291	hgsc.bcm.edu	hg19	3	158322940	158322940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MLF1	NM_001195432	exon9	c.G849C	p.L283F	TGTTTTGGGGGAC	.	267.0	119.0	102.0	0.0	.	62	.	.	Atlas-SNP
IL12A	3592	hgsc.bcm.edu	hg19	3	159708075	159708075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IL12A	NM_000882	exon2	c.G240T	p.R80S	GCTGAGGGCCGTC	.	142.0	40.0	45.0	0.0	.	23	.	.	Atlas-SNP
MCCC1	56922	hgsc.bcm.edu	hg19	3	182756877	182756877	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MCCC1	NM_020166	exon12	c.C1314G	p.V438V	CCACACGACCAGC	.	194.0	89.0	70.0	0.0	.	87	.	.	Atlas-SNP
CLDN1	9076	hgsc.bcm.edu	hg19	3	190030689	190030689	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CLDN1	NM_021101	exon2	c.C360A	p.V120V	CCCAATGACAGCC	.	155.0	53.0	67.0	0.0	.	23	.	.	Atlas-SNP
LRCH3	84859	hgsc.bcm.edu	hg19	3	197592314	197592314	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	LRCH3	NM_032773	exon16	c.T1737C	p.A579A	TAATGCTCTATTA	.	253.0	93.0	107.0	0.0	.	96	.	.	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	hg19	4	44176879	44176879	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCTD8	NM_198353	exon2	c.C1350T	p.I450I	AATGTGGATTTTT	.	210.0	98.0	93.0	0.0	.	96	.	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	hg19	4	46967062	46967062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRA4	NM_000809	exon8	c.G1059T	p.R353S	TGTCTTCCTTTTG	.	620.0	230.0	165.0	0.0	.	129	.	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	hg19	4	47746441	47746441	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CORIN	NM_006587	exon5	c.T777G	p.P259P	CTGCTGAGGTGAG	.	127.0	41.0	61.0	0.0	.	154	.	.	Atlas-SNP
SMR3A	26952	hgsc.bcm.edu	hg19	4	71232505	71232505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMR3A	NM_012390	exon3	c.C199A	p.L67I	CCACCCCTTTCTC	.	307.0	119.0	105.0	0.0	.	35	.	.	Atlas-SNP
C4orf26	152816	hgsc.bcm.edu	hg19	4	76489342	76489342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	C4orf26_ENST00000435974,rectum,carcinoma,-1,2	C4orf26	NM_001206981	exon3	c.C130T	p.R44C	TATTTACGCCTCC	.	71.0	36.0	46.0	0.0	.	24	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104060948	104060948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CENPE	NM_001813	exon38	c.A6202G	p.R2068G	TCACTCTAGCTAT	.	227.0	153.0	114.0	0.0	.	253	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114278315	114278315	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ANK2	NM_001148	exon38	c.A8541T	p.S2847S	ATCTTCATCCTCT	.	212.0	76.0	67.0	0.0	.	576	.	.	Atlas-SNP
NAA15	80155	hgsc.bcm.edu	hg19	4	140272693	140272693	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NAA15	NM_057175	exon9	c.A942G	p.L314L	GTTCCTAAGGATG	.	216.0	96.0	86.0	0.0	.	88	.	.	Atlas-SNP
ING2	3622	hgsc.bcm.edu	hg19	4	184431731	184431731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	ING2,NS,carcinoma,0,1	ING2	NM_001564	exon2	c.A469G	p.T157A	CAGCGGACCAGTG	.	211.0	79.0	75.0	0.0	.	20	.	.	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	hg19	4	186533094	186533094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SORBS2	NM_001270771	exon21	c.G3224A	p.W1075X	TCATACCAGTTTT	.	351.0	22.0	113.0	0.0	.	300	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19612615	19612615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH18	NM_001167667	exon6	c.G739T	p.G247W	AAAGCCCTCCAAC	.	375.0	203.0	91.0	0.0	.	561	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26906920	26906920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDH9	NM_016279	exon4	c.C551T	p.T184I	GCATCTGTTGCAG	.	228.0	121.0	67.0	0.0	.	305	.	.	Atlas-SNP
PLCXD3	345557	hgsc.bcm.edu	hg19	5	41381972	41381972	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLCXD3	NM_001005473	exon2	c.G768A	p.V256V	TTTGACCACAGTG	.	290.0	162.0	72.0	0.0	.	86	.	.	Atlas-SNP
ERCC8	1161	hgsc.bcm.edu	hg19	5	60200656	60200656	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ERCC8	NM_000082	exon5	c.T444C	p.H148H	AGACATATGATGA	.	322.0	130.0	108.0	0.0	.	31	.	.	Atlas-SNP
MEF2C	4208	hgsc.bcm.edu	hg19	5	88025144	88025144	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEF2C	NM_001193347	exon10	c.C885A	p.S295S	CGACTGGGAGTTA	.	119.0	43.0	54.0	0.0	.	184	.	.	Atlas-SNP
ZNF474	133923	hgsc.bcm.edu	hg19	5	121487810	121487810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	ZNF474,rectum,carcinoma,0,1	ZNF474	NM_207317	exon2	c.C125T	p.S42F	GCCTTTCCCCAGA	.	242.0	111.0	90.0	0.0	.	43	.	.	Atlas-SNP
SLC27A6	28965	hgsc.bcm.edu	hg19	5	128368891	128368891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SLC27A6	NM_001017372	exon10	c.C1776A	p.Y592X	ACTTTACTTCATG	.	422.0	160.0	123.0	0.0	.	112	.	.	Atlas-SNP
SIL1	64374	hgsc.bcm.edu	hg19	5	138287486	138287486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIL1	NM_001037633	exon9	c.A855G	p.A285A	CTTCTTTGCAGTG	.	64.0	22.0	17.0	0.0	.	31	.	.	Atlas-SNP
PCDHB11	56125	hgsc.bcm.edu	hg19	5	140580796	140580796	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCDHB11	NM_018931	exon1	c.C1449T	p.N483N	CACCAACGCCCAG	.	171.0	65.0	64.0	0.0	.	162	.	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	176003023	176003023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDHR2	NM_017675	exon12	c.T1031C	p.M344T	GAGTGATGGACGT	.	110.0	34.0	42.0	0.0	.	152	.	.	Atlas-SNP
DBN1	1627	hgsc.bcm.edu	hg19	5	176887553	176887553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DBN1	NM_080881	exon11	c.G841A	p.A281T	CTGCTGCCTCCTG	.	144.0	69.0	53.0	0.0	.	122	.	.	Atlas-SNP
ZFP2	80108	hgsc.bcm.edu	hg19	5	178358877	178358877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZFP2	NM_030613	exon5	c.G563T	p.C188F	ATCAGTGTAAAGA	.	52.0	19.0	29.0	0.0	.	70	.	.	Atlas-SNP
NCR2	9436	hgsc.bcm.edu	hg19	6	41309741	41309741	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCR2	NM_001199509	exon4	c.G534T	p.P178P	CAGCCCGTCCTCT	.	63.0	27.0	29.0	0.0	.	44	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43153266	43153266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CUL9	NM_015089	exon3	c.G668A	p.R223H	ACAGTCGCTATAC	.	121.0	52.0	37.0	0.0	.	248	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43273593	43273593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CRIP3	NM_206922	exon8	c.G574C	p.G192R	AGCAGCCCACATC	.	178.0	56.0	74.0	0.0	.	30	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79688429	79688429	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PHIP	NM_017934	exon25	c.2770-1G>T	.	CAATCTCTGACAA	.	151.0	61.0	61.0	0.0	.	177	.	.	Atlas-SNP
GABRR2	2570	hgsc.bcm.edu	hg19	6	90009577	90009577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GABRR2	NM_002043	exon2	c.T121C	p.Y41H	TCTTATATAAGTG	.	190.0	79.0	74.0	0.0	.	41	.	.	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	hg19	6	107391941	107391941	+	Missense_Mutation	SNP	C	C	T	rs142662918	bycluster;byfrequency;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	BEND3,NS,carcinoma,0,1	BEND3	NM_001080450	exon5	c.G454A	p.V152M	CGTACACGTTTAG	.	144.0	59.0	54.0	0.0	.	70	.	C|1.000;G|0.000	Atlas-SNP
PDSS2	57107	hgsc.bcm.edu	hg19	6	107475922	107475922	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDSS2	NM_020381	exon8	c.C1101G	p.Y367X	TCCATGGTAACGA	.	122.0	53.0	51.0	0.0	.	37	.	.	Atlas-SNP
COL10A1	1300	hgsc.bcm.edu	hg19	6	116441243	116441243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL10A1	NM_000493	exon3	c.C2036A	p.P679Q	CACATTGGAGCCA	.	97.0	43.0	38.0	0.0	.	51	.	.	Atlas-SNP
COL10A1	1300	hgsc.bcm.edu	hg19	6	116441244	116441244	+	Missense_Mutation	SNP	G	G	T	rs138831203		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL10A1	NM_000493	exon3	c.C2035A	p.P679T	ACATTGGAGCCAC	.	96.0	42.0	38.0	0.0	.	51	.	G|1.000;T|0.000	Atlas-SNP
ZUFSP	221302	hgsc.bcm.edu	hg19	6	116987856	116987856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.A500T	p.E167V	ATATCTTCACTGT	.	284.0	25.0	95.0	0.0	.	46	.	.	Atlas-SNP
ZUFSP	221302	hgsc.bcm.edu	hg19	6	116987857	116987857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZUFSP	NM_145062	exon2	c.G499T	p.E167X	TATCTTCACTGTG	.	286.0	26.0	95.0	0.0	.	46	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136589325	136589325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	BCLAF1_ENST00000531224,right_upper_lobe,carcinoma,0,1	BCLAF1	NM_014739	exon10	c.G2372T	p.G791V	CTAACTCCTGCAA	.	333.0	37.0	106.0	0.0	.	203	.	.	Atlas-SNP
RPS6KA2	6196	hgsc.bcm.edu	hg19	6	166944752	166944752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RPS6KA2	NM_001006932	exon4	c.C290T	p.A97V	TTCATGGCGTAGA	.	108.0	34.0	47.0	0.0	.	212	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11464348	11464348	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	THSD7A	NM_015204	exon15	c.G3358C	p.E1120Q	CGCCCTCTCCACA	.	153.0	14.0	57.0	0.0	.	219	.	.	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	hg19	7	31691634	31691634	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CCDC129	NM_001257968	exon13	c.G2871T	p.R957R	AGACCGGGCTCAG	.	444.0	210.0	113.0	0.0	.	127	.	.	Atlas-SNP
UPP1	7378	hgsc.bcm.edu	hg19	7	48147819	48147819	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UPP1	NM_003364	exon9	c.C798T	p.A266A	AGCGGCCGTGGTG	.	58.0	27.0	20.0	0.0	.	35	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48559835	48559835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ABCA13	NM_152701	exon53	c.A13996G	p.T4666A	CAGGGCACAGTAC	.	275.0	92.0	98.0	0.0	.	1192	.	.	Atlas-SNP
ELN	2006	hgsc.bcm.edu	hg19	7	73474235	73474235	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ELN	NM_001081754	exon23	c.C1449T	p.G483G	TGTCGGCGTGGCT	.	507.0	29.0	108.0	0.0	.	81	.	.	Atlas-SNP
TFEC	22797	hgsc.bcm.edu	hg19	7	115624439	115624439	+	Silent	SNP	C	C	A	rs34738022	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TFEC	NM_001018058	exon2	c.G57T	p.V19V	ACTTGGCACTGCA	.	393.0	158.0	127.0	0.0	.	51	.	C|0.983;T|0.017	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117375351	117375351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTTNBP2	NM_033427	exon15	c.C3660A	p.S1220R	TTCAGTGCTGCGA	.	151.0	67.0	72.0	0.0	.	200	.	.	Atlas-SNP
KLHDC10	23008	hgsc.bcm.edu	hg19	7	129760678	129760678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KLHDC10	NM_014997	exon4	c.G565T	p.V189L	TGTAATGTGAAGT	.	325.0	76.0	74.0	0.0	.	36	.	.	Atlas-SNP
KLHDC10	23008	hgsc.bcm.edu	hg19	7	129760679	129760679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KLHDC10	NM_014997	exon4	c.T566A	p.V189E	GTAATGTGAAGTA	.	323.0	72.0	75.0	0.0	.	36	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131883315	131883315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNA4	NM_020911	exon13	c.C2667A	p.D889E	GGCGATGTCGCGA	.	41.0	10.0	23.0	0.0	.	873	.	.	Atlas-SNP
FAM180A	389558	hgsc.bcm.edu	hg19	7	135418945	135418945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM180A	NM_205855	exon3	c.C300A	p.S100R	TGGGATGCTCTTG	.	92.0	41.0	41.0	0.0	.	32	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2976080	2976080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	CSMD1_ENST00000537824,right_upper_lobe,carcinoma,0,2	CSMD1	NM_033225	exon42	c.C6271A	p.P2091T	ATGGGGGTGGATC	.	140.0	55.0	57.0	0.0	.	1469	.	.	Atlas-SNP
SGCZ	137868	hgsc.bcm.edu	hg19	8	13965672	13965672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	SGCZ,NS,malignant_melanoma,0,1	SGCZ	NM_139167	exon6	c.G620A	p.R207K	CCTTACCTGAGAT	.	178.0	64.0	76.0	0.0	.	96	.	.	Atlas-SNP
MMP16	4325	hgsc.bcm.edu	hg19	8	89339405	89339405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MMP16	NM_005941	exon1	c.C31G	p.R11G	CCAACCGTCTTCC	.	113.0	32.0	65.0	0.0	.	176	.	.	Atlas-SNP
MTBP	27085	hgsc.bcm.edu	hg19	8	121530146	121530146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MTBP	NM_022045	exon19	c.A2302G	p.N768D	AATAGTAATCACT	.	108.0	46.0	34.0	0.0	.	77	.	.	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	hg19	9	6981046	6981046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM4C	NM_001146696	exon9	c.C1109T	p.P370L	CGAAGCCTACTCC	.	92.0	45.0	38.0	0.0	.	186	.	.	Atlas-SNP
PLAA	9373	hgsc.bcm.edu	hg19	9	26923264	26923264	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLAA	NM_001031689	exon7	c.G951T	p.L317L	GTGAGACAGTTCT	.	343.0	122.0	111.0	0.0	.	48	.	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35382500	35382500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13B	NM_006377	exon20	c.T2555G	p.F852C	CCAACTTTGGGGT	.	233.0	26.0	73.0	0.0	.	153	.	.	Atlas-SNP
APBA1	320	hgsc.bcm.edu	hg19	9	72064664	72064664	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	APBA1	NM_001163	exon10	c.G2017T	p.E673X	CAGACTCCACAAT	.	98.0	38.0	48.0	0.0	.	96	.	.	Atlas-SNP
SMC5	23137	hgsc.bcm.edu	hg19	9	72879327	72879327	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SMC5	NM_015110	exon2	c.C293G	p.A98G	GTTTAGCTGGAAA	.	331.0	155.0	92.0	0.0	.	96	.	.	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	hg19	9	86457172	86457172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KIF27	NM_017576	exon17	c.G3701A	p.R1234Q	AGTTGCCGCCGAA	.	603.0	245.0	138.0	0.0	.	103	.	.	Atlas-SNP
RALGDS	5900	hgsc.bcm.edu	hg19	9	135984101	135984101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RALGDS	NM_006266	exon5	c.C737T	p.A246V	AGCTGGGCCAGGA	.	50.0	32.0	33.0	0.0	.	75	.	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	hg19	10	67829142	67829142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CTNNA3	NM_013266	exon15	c.G2083T	p.D695Y	TATCATCCCATAT	.	354.0	140.0	121.0	0.0	.	401	.	.	Atlas-SNP
ITPRIP	85450	hgsc.bcm.edu	hg19	10	106075119	106075119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.C691T	p.R231C	CTGAGCGGCCGGA	.	77.0	43.0	38.0	0.0	.	44	.	.	Atlas-SNP
ITPRIP	85450	hgsc.bcm.edu	hg19	10	106075611	106075611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ITPRIP	NM_001272013	exon2	c.G199C	p.E67Q	GTGCCTCCTTTTC	.	80.0	25.0	30.0	0.0	.	44	.	.	Atlas-SNP
TECTB	6975	hgsc.bcm.edu	hg19	10	114046139	114046139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TECTB	NM_058222	exon4	c.A473G	p.N158S	CTCTCAACTTCTA	.	142.0	55.0	66.0	0.0	.	35	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123846536	123846536	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TACC2	NM_206862	exon4	c.G4521T	p.R1507R	GGAGCGGAACTTG	.	53.0	17.0	27.0	0.0	.	271	.	.	Atlas-SNP
SPTY2D1	144108	hgsc.bcm.edu	hg19	11	18638422	18638422	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPTY2D1	NM_194285	exon2	c.G175C	p.A59P	ACATACCTTTTCG	.	255.0	107.0	103.0	0.0	.	72	.	.	Atlas-SNP
PPP1R32	220004	hgsc.bcm.edu	hg19	11	61249803	61249803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001170753	exon3	c.C130T	p.R44C	AAGCCCCGTGTGG	.	71.0	22.0	31.0	0.0	.	.	.	.	Atlas-SNP
GANAB	23193	hgsc.bcm.edu	hg19	11	62407128	62407128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GANAB	NM_198334	exon2	c.T114C	p.F38F	GGTCTTAAAGTTG	.	194.0	86.0	90.0	0.0	.	110	.	.	Atlas-SNP
KAT5	10524	hgsc.bcm.edu	hg19	11	65479799	65479799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KAT5	NM_182710	exon1	c.A61G	p.R21G	GTGGGTAGAGCCC	.	104.0	37.0	56.0	0.0	.	36	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	hg19	11	66975117	66975117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon6	c.T444A	p.F148L	CGAGTTTAGCCAC	.	125.0	50.0	42.0	0.0	.	80	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	hg19	11	66986855	66986855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KDM2A	NM_012308	exon10	c.A938G	p.N313S	TATACAACATTGA	.	153.0	65.0	58.0	0.0	.	80	.	.	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	hg19	11	71249121	71249121	+	Missense_Mutation	SNP	C	C	G	rs200585722	bycluster	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP5-8	NM_021046	exon1	c.C20G	p.S7C	GCTGCTCTGGAGG	.	324.0	17.0	72.0	0.0	.	28	.	.	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825206	95825206	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAML2	NM_032427	exon2	c.G1989A	p.Q663Q	TTGTTGCTGCTGC	.	240.0	25.0	57.0	0.0	.	94	.	.	Atlas-SNP
PDGFD	80310	hgsc.bcm.edu	hg19	11	103870889	103870889	+	Silent	SNP	G	G	A	rs200239592	by1000genomes;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDGFD	NM_025208	exon2	c.C219T	p.Y73Y	CCTGGGGTAGCTG	.	423.0	163.0	113.0	0.0	.	125	.	G|1.000;C|0.000	Atlas-SNP
SPATA19	219938	hgsc.bcm.edu	hg19	11	133714431	133714431	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SPATA19	NM_174927	exon3	c.C240A	p.G80G	GTCCTGGCCATGG	.	219.0	91.0	78.0	0.0	.	36	.	.	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	hg19	12	13720174	13720174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GRIN2B	NM_000834	exon12	c.C2383T	p.L795F	GCCAGAGAGCTTC	.	172.0	69.0	61.0	0.0	.	303	.	.	Atlas-SNP
BCAT1	586	hgsc.bcm.edu	hg19	12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCAT1	NM_001178093	exon8	c.T920C	p.L307P	AGGTCCAGAATGC	.	171.0	67.0	80.0	0.0	.	44	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50724480	50724480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FAM186A	NM_001145475	exon7	c.A6910T	p.I2304L	CTGCTATTGGGTA	.	285.0	110.0	92.0	0.0	.	181	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70970186	70970186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PTPRB	NM_001109754	exon11	c.C2818A	p.H940N	AGGAGTGATTTTC	.	234.0	81.0	88.0	0.0	.	676	.	.	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	hg19	12	80761993	80761993	+	Silent	SNP	A	A	G	rs370122451		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OTOGL	NM_173591	exon54	c.A6492G	p.V2164V	CCAGGTATATACT	.	207.0	74.0	90.0	0.0	.	235	.	.	Atlas-SNP
MGAT4C	25834	hgsc.bcm.edu	hg19	12	86374008	86374008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGAT4C	NM_013244	exon7	c.G496T	p.A166S	TTCCTGCAATAAT	.	109.0	48.0	44.0	0.0	.	110	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88486497	88486497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CEP290	NM_025114	exon29	c.T3422C	p.L1141S	TTCTCTAATTCTA	.	366.0	150.0	119.0	0.0	.	195	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94542869	94542869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PLXNC1	NM_005761	exon1	c.G122T	p.R41L	TGTGGCGGTCGGA	.	18.0	10.0	0.0	0.0	.	135	.	.	Atlas-SNP
SIRT4	23409	hgsc.bcm.edu	hg19	12	120741415	120741415	+	Silent	SNP	C	C	T	rs199859894		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SIRT4	NM_012240	exon2	c.C51T	p.I17I	TTGGATCGCAAAC	.	86.0	25.0	40.0	0.0	.	29	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121432014	121432014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon4	c.T761A	p.L254Q	AGGGGCTGGGCTC	.	71.0	21.0	34.0	0.0	.	302	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35672500	35672500	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NBEA	NM_015678	exon11	c.G1638T	p.L546L	GATGCTGGGTGGA	.	178.0	64.0	70.0	0.0	.	340	.	.	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	hg19	13	37678916	37678916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CSNK1A1L	NM_145203	exon1	c.T478A	p.L160M	TGGCCAAACCAAA	.	743.0	336.0	152.0	0.0	.	69	.	.	Atlas-SNP
SUGT1	10910	hgsc.bcm.edu	hg19	13	53254291	53254291	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SUGT1	NM_001130912	exon13	c.996+1G>T	.	TCCTTTGTAAGAA	.	142.0	44.0	76.0	0.0	.	37	.	.	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	hg19	13	76055603	76055603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TBC1D4	NM_014832	exon1	c.G301A	p.A101T	CCGAGGCCCCAGC	.	80.0	39.0	26.0	0.0	.	142	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109540788	109540788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO16	NM_001198950	exon14	c.G1622T	p.G541V	GGGCTGGCGCCAG	.	202.0	81.0	69.0	0.0	.	285	.	.	Atlas-SNP
OR4K2	390431	hgsc.bcm.edu	hg19	14	20344661	20344661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K2	NM_001005501	exon1	c.C235A	p.P79T	GCCACCCCAAAGA	.	413.0	119.0	124.0	0.0	.	97	.	.	Atlas-SNP
OR4K1	79544	hgsc.bcm.edu	hg19	14	20404418	20404418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	OR4K1	NM_001004063	exon1	c.T593G	p.M198R	AAATTATGACCCT	.	284.0	74.0	132.0	0.0	.	108	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23897841	23897841	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	MYH7,caecum,carcinoma,0,1	MYH7	NM_000257	exon15	c.C1446T	p.N482N	CTTCTCGTTGGTG	.	381.0	19.0	96.0	0.0	.	349	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60074128	60074128	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_021136	exon4	c.C1848A	p.T616T	GAACTGGGTCAGG	.	78.0	33.0	18.0	0.0	.	139	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60097163	60097163	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	RTN1	NM_206852	exon2	c.61+1G>T	.	AGAATACCCTGAC	.	78.0	23.0	31.0	0.0	.	139	.	.	Atlas-SNP
POMT2	29954	hgsc.bcm.edu	hg19	14	77751296	77751296	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	POMT2	NM_013382	exon14	c.A1573T	p.K525X	CACACTTGGGATT	.	126.0	50.0	52.0	0.0	.	47	.	.	Atlas-SNP
MEIS2	4212	hgsc.bcm.edu	hg19	15	37329148	37329148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MEIS2	NM_170676	exon8	c.A767T	p.D256V	CTGTTGTCTAAAC	.	236.0	114.0	83.0	0.0	.	99	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42059127	42059127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MGA	NM_001164273	exon24	c.G8847A	p.K2949K	AGGGAAGAATACT	.	80.0	26.0	49.0	0.0	.	264	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48780612	48780612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FBN1	NM_000138	exon26	c.G3161A	p.R1054K	TCACACCTGCACT	.	123.0	52.0	40.0	0.0	.	310	.	.	Atlas-SNP
PDCD7	10081	hgsc.bcm.edu	hg19	15	65426109	65426109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDCD7	NM_005707	exon1	c.C11T	p.P4L	AATGGTGGCAGGG	.	71.0	29.0	26.0	0.0	.	22	.	.	Atlas-SNP
IDH3A	3419	hgsc.bcm.edu	hg19	15	78454584	78454584	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	IDH3A	NM_005530	exon6	c.T486C	p.D162D	TGTTGATGGAGTC	.	106.0	64.0	26.0	0.0	.	24	.	.	Atlas-SNP
UNKL	64718	hgsc.bcm.edu	hg19	16	1420138	1420138	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNKL	NM_001193388	exon12	c.C1578T	p.S526S	TAGGGGGCTGTAG	.	33.0	13.0	11.0	0.0	.	46	.	.	Atlas-SNP
ZSCAN32	54925	hgsc.bcm.edu	hg19	16	3433548	3433548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_017810	exon6	c.A762C	p.R254S	AGAATTTCTACAT	.	307.0	121.0	112.0	0.0	.	.	.	.	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28112968	28112968	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	XPO6	NM_015171	exon23	c.G3087T	p.V1029V	GAGCAGCACGTTC	.	40.0	16.0	24.0	0.0	.	177	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30750324	30750324	+	Missense_Mutation	SNP	C	C	T	rs369907818		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRCAP	NM_006662	exon34	c.C8963T	p.T2988I	CTGCTACTGTTGC	.	91.0	35.0	40.0	0.0	.	298	.	.	Atlas-SNP
PDPR	55066	hgsc.bcm.edu	hg19	16	70190496	70190496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PDPR	NM_017990	exon19	c.G2354T	p.W785L	CTTGGTGGGGAGA	.	176.0	24.0	65.0	0.0	.	66	.	.	Atlas-SNP
TCF25	22980	hgsc.bcm.edu	hg19	16	89960138	89960138	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TCF25	NM_014972	exon7	c.C700G	p.L234V	CCAGGTCTGTCCA	.	153.0	42.0	30.0	0.0	.	61	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578554	7578554	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon5	c.T376G	p.Y126D	GGGAGTACTGTAG	.	21.0	14.0	17.0	0.0	.	33396	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27493801	27493801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18A	NM_078471	exon2	c.A158G	p.K53R	TCACGCTTGGAGG	.	225.0	81.0	79.0	0.0	.	217	.	.	Atlas-SNP
GPR179	440435	hgsc.bcm.edu	hg19	17	36483358	36483358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR179	NM_001004334	exon11	c.G6094T	p.V2032L	TTGACACCCCTTT	.	142.0	57.0	70.0	0.0	.	170	.	.	Atlas-SNP
G6PC3	92579	hgsc.bcm.edu	hg19	17	42152763	42152763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	G6PC3	NM_138387	exon5	c.G621A	p.M207I	CCTCATGCTAGGC	.	286.0	99.0	93.0	0.0	.	26	.	.	Atlas-SNP
SRSF1	6426	hgsc.bcm.edu	hg19	17	56083127	56083127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SRSF1	NM_001078166	exon3	c.A587G	p.N196S	ATCCAATTCTGGT	.	117.0	39.0	58.0	0.0	.	41	.	.	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73836847	73836847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	UNC13D	NM_199242	exon8	c.C679A	p.R227S	ACCTGCGAAGCCC	.	251.0	68.0	53.0	0.0	.	68	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74003252	74003252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	EVPL	NM_001988	exon22	c.C6034A	p.P2012T	CCGCTGGCAGGAG	.	72.0	11.0	6.0	0.0	.	155	.	.	Atlas-SNP
LOC100653515	0	hgsc.bcm.edu	hg19	17	76886840	76886840	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001243540	exon3	c.C1746T	p.D582D	CCGGTCGTCGTCG	.	599.0	126.0	120.0	0.0	.	.	.	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72346946	72346946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF407	NM_001146190	exon1	c.G3971A	p.G1324D	AGGATGGCCCAGC	.	104.0	48.0	48.0	0.0	.	231	.	.	Atlas-SNP
AKAP8L	26993	hgsc.bcm.edu	hg19	19	15512065	15512065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	AKAP8L	NM_014371	exon5	c.G712A	p.G238S	CCCCACCTCGCAT	.	22.0	17.0	19.0	0.0	.	64	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HRC	NM_002152	exon1	c.G609A	p.E203E	GGCCTCCTCTTCC	.	219.0	9.0	79.0	0.0	.	85	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HRC	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	238.0	14.0	84.0	0.0	.	85	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53057994	53057994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF808	NM_001039886	exon5	c.G1825T	p.A609S	AAATCAGCTCTTG	.	77.0	30.0	39.0	0.0	.	81	.	.	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	hg19	19	53209133	53209133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF611	NM_030972	exon7	c.A1175G	p.H392R	CCAGTATGAATTC	.	107.0	41.0	60.0	0.0	.	72	.	.	Atlas-SNP
PCNA	5111	hgsc.bcm.edu	hg19	20	5096123	5096123	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PCNA	NM_002592	exon6	c.A678G	p.T226T	ACTGAGTGTCACC	.	239.0	104.0	93.0	0.0	.	17	.	.	Atlas-SNP
BPIFA1	51297	hgsc.bcm.edu	hg19	20	31825880	31825880	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_016583	exon3	c.G180T	p.L60L	CCTGCTGTCTGGG	.	95.0	38.0	37.0	0.0	.	.	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47269916	47269916	+	Missense_Mutation	SNP	G	G	A	rs371398821		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	PREX1	NM_020820	exon20	c.C2329T	p.R777W	CGCGCCGACTCCG	.	55.0	27.0	22.0	0.0	.	441	.	.	Atlas-SNP
CABLES2	81928	hgsc.bcm.edu	hg19	20	60968622	60968622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CABLES2	NM_031215	exon6	c.C754A	p.L252M	TGACCAGGGCGTT	.	120.0	57.0	52.0	0.0	.	30	.	.	Atlas-SNP
GART	2618	hgsc.bcm.edu	hg19	21	34876612	34876612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GART	NM_001136005	exon22	c.A2852T	p.D951V	CCAGCATCCACAT	.	99.0	35.0	46.0	0.0	.	81	.	.	Atlas-SNP
PLAC4	191585	hgsc.bcm.edu	hg19	21	42551311	42551311	+	Missense_Mutation	SNP	A	A	G	rs201045863		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_182832	exon1	c.T245C	p.I82T	GAGGGTATCCAGG	.	394.0	36.0	123.0	0.0	.	.	.	.	Atlas-SNP
KRTAP10-6	386674	hgsc.bcm.edu	hg19	21	46011435	46011435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KRTAP10-6	NM_198688	exon1	c.G931T	p.V311L	TGCACACAGGGTG	.	306.0	119.0	95.0	0.0	.	57	.	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18273818	18273818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MICAL3	NM_015241	exon31	c.G5770A	p.E1924K	GGTCTTCCAGCTC	.	52.0	21.0	21.0	0.0	.	53	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26423608	26423608	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MYO18B	NM_032608	exon43	c.T7668C	p.D2556D	CGACGATGTTGCG	.	93.0	35.0	39.0	0.0	.	322	.	.	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	hg19	22	26706636	26706636	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SEZ6L	NM_001184777	exon7	c.G1515A	p.R505R	TGCCAGGATGACG	.	102.0	36.0	44.0	0.0	.	174	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38119757	38119757	+	Missense_Mutation	SNP	A	A	T	rs199535040		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRIOBP	NM_001039141	exon7	c.A1194T	p.Q398H	CACTCAACGAGAG	.	116.0	10.0	36.0	0.0	.	262	.	.	Atlas-SNP
TRMU	55687	hgsc.bcm.edu	hg19	22	46751486	46751486	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TRMU	NM_018006	exon9	c.1018+1G>A	.	CACTAGGTGACTG	.	53.0	39.0	27.0	0.0	.	23	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3240505	3240505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MXRA5	NM_015419	exon5	c.A3221T	p.E1074V	TCTCCCTCTAGCA	.	520.0	190.0	132.0	0.0	.	815	.	.	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12712563	12712563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FRMPD4	NM_014728	exon9	c.T923C	p.L308P	AGTATCTCTATGT	.	328.0	132.0	103.0	0.0	.	214	.	.	Atlas-SNP
ATXN3L	92552	hgsc.bcm.edu	hg19	X	13337139	13337139	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ATXN3L	NM_001135995	exon1	c.C915A	p.G305G	ACTGTGGCCCGGC	.	457.0	213.0	141.0	0.0	.	64	.	.	Atlas-SNP
SCML1	6322	hgsc.bcm.edu	hg19	X	17768332	17768332	+	Missense_Mutation	SNP	G	G	T	rs199560760	by1000genomes;alternate_allele	TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	SCML1	NM_001037540	exon6	c.G622T	p.G208W	TCTTCAGGGCTCT	.	173.0	58.0	77.0	0.0	.	55	.	G|1.000;A|0.000	Atlas-SNP
DCAF8L1	139425	hgsc.bcm.edu	hg19	X	27998516	27998516	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DCAF8L1	NM_001017930	exon1	c.C936T	p.F312F	AATGGTGAACACA	.	183.0	59.0	64.0	0.0	.	121	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31200854	31200854	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	DMD	NM_004016	exon8	c.770+1G>T	.	CTAATACCTGAAT	.	153.0	58.0	75.0	0.0	.	2127	.	.	Atlas-SNP
CASK	8573	hgsc.bcm.edu	hg19	X	41428985	41428985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CASK	NM_001126054	exon16	c.A1518G	p.K506K	ATTCATTTTTAAA	.	411.0	162.0	137.0	0.0	.	93	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43652777	43652777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAOB	NM_000898	exon8	c.C817A	p.H273N	TGAAGTGAATCTT	.	461.0	152.0	142.0	0.0	.	52	.	.	Atlas-SNP
ARHGEF9	23229	hgsc.bcm.edu	hg19	X	62926264	62926264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF9	NM_015185	exon3	c.C255A	p.D85E	ATTGGGGTCCAGG	.	102.0	45.0	49.0	0.0	.	117	.	.	Atlas-SNP
FOXO4	4303	hgsc.bcm.edu	hg19	X	70316754	70316754	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	FOXO4	NM_005938	exon1	c.C376G	p.Q126E	CTTGCCCAGATCT	.	283.0	115.0	91.0	0.0	.	60	.	.	Atlas-SNP
TGIF2LX	90316	hgsc.bcm.edu	hg19	X	89177576	89177576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TGIF2LX	NM_138960	exon2	c.G492T	p.K164N	GCCAAAGGGCCAG	.	165.0	65.0	68.0	0.0	.	84	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107807134	107807134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	COL4A5	NM_000495	exon4	c.C254A	p.P85Q	CAGGGCCACCAGG	.	498.0	220.0	148.0	0.0	.	262	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135487872	135487872	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	GPR112	NM_153834	exon23	c.T8676C	p.S2892S	TGATTCTATCTTT	.	487.0	173.0	143.0	0.0	.	459	.	.	Atlas-SNP
HTATSF1	27336	hgsc.bcm.edu	hg19	X	135582923	135582923	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HTATSF1	NM_001163280	exon5	c.T516G	p.L172L	CAAACTTTACAAA	.	579.0	246.0	155.0	0.0	.	66	.	.	Atlas-SNP
VGLL1	51442	hgsc.bcm.edu	hg19	X	135618180	135618180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VGLL1	NM_016267	exon2	c.A1G	p.M1V	CTCACAATGGAAG	.	46.0	23.0	32.0	0.0	.	41	.	.	Atlas-SNP
ARHGEF6	9459	hgsc.bcm.edu	hg19	X	135767930	135767930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ARHGEF6	NM_004840	exon12	c.C1298G	p.S433C	GGTTCGGACAGTA	.	320.0	118.0	103.0	0.0	.	111	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14459	14459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	ENST00000361681	exon1	c.C215A	p.A72E	GCCATCGCTGTAG	.	358.0	24.0	76.0	0.0	.	.	.	.	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9528600	9528601	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ASAP2	NM_001135191	exon22	c.2308_2309insG	p.S770fs	.	.	129.0	12.0	43.0	0.0	.	91	.	.	Atlas-INDEL
KCNK16	83795	hgsc.bcm.edu	hg19	6	39286869	39286870	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	KCNK16	NM_001135106	exon2	c.254_255del	p.85_85del	.	.	80.0	25.0	29.0	0.0	.	59	.	.	Atlas-INDEL
TMTC2	160335	hgsc.bcm.edu	hg19	12	83250884	83250885	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMTC2	NM_152588	exon2	c.179_180insC	p.G60fs	.	.	216.0	15.0	62.0	0.0	.	100	.	.	Atlas-INDEL
CEP170B	283638	hgsc.bcm.edu	hg19	14	105351860	105351860	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001112726	exon10	c.1924delG	p.A642fs	.	.	32.0	16.0	8.0	0.0	.	.	.	.	Atlas-Indel,Pindel
VGLL2	245806	hgsc.bcm.edu	hg19	6	117589420	117589421	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VGLL2	NM_182645	exon2	c.157_158insC	p.S53fs	.	.	120.0	11.0	34.0	0.0	.	18	.	.	Atlas-INDEL
ZNF322	79692	hgsc.bcm.edu	hg19	6	26637760	26637762	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	.	NM_001242797	exon5	c.1021_1023del	p.341_341del	.	.	1977.0	240.0	191.0	0.0	.	.	.	.	Atlas-INDEL
MAGEA6	4105	hgsc.bcm.edu	hg19	X	151869343	151869343	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAGEA6	NM_005363	exon3	c.32delA	p.K11fs	.	.	237.0	25.0	111.0	0.0	.	53	.	.	Atlas-INDEL
MAGEA3	4102	hgsc.bcm.edu	hg19	X	151936132	151936132	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MAGEA3	NM_005362	exon3	c.36delT	p.P12fs	.	.	224.0	23.0	118.0	0.0	.	36	.	.	Atlas-INDEL
CMYA5	202333	hgsc.bcm.edu	hg19	5	79027939	79027953	+	In_Frame_Del	DEL	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	ATATTTAGAGCCTGA	ATATTTAGAGCCTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CMYA5	NM_153610	exon2	c.3350_3364del	p.1117_1122del	.	.	176.0	28.0	90.0	0.0	.	643	.	.	Atlas-Indel,Pindel
TTC14	151613	hgsc.bcm.edu	hg19	3	180325533	180325533	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TTC14	NM_001042601	exon10	c.1269delG	p.Q423fs	.	.	238.0	102.0	97.0	0.0	.	112	.	.	Atlas-Indel,Pindel
MPEG1	219972	hgsc.bcm.edu	hg19	11	58979138	58979139	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	MPEG1	NM_001039396	exon1	c.1201_1202insC	p.E401fs	.	.	127.0	38.0	55.0	0.0	.	72	.	.	Atlas-Indel,Pindel
VRTN	55237	hgsc.bcm.edu	hg19	14	74824462	74824463	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	VRTN,caecum,carcinoma,0,1	VRTN	NM_018228	exon2	c.976_977insG	p.R326fs	.	.	26.0	10.0	20.0	0.0	.	79	.	.	Atlas-INDEL
NPAS2	4862	hgsc.bcm.edu	hg19	2	101554302	101554302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NPAS2	NM_002518	exon5	c.360delA	p.L120fs	.	.	222.0	97.0	71.0	0.0	.	88	.	.	Atlas-Indel,Pindel
VWA5B1	127731	hgsc.bcm.edu	hg19	1	20671955	20671956	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	VWA5B1	NM_001039500	exon17	c.2633_2634insC	p.N878fs	.	.	143.0	13.0	49.0	0.0	.	44	.	.	Atlas-INDEL
ZNF469	84627	hgsc.bcm.edu	hg19	16	88497694	88497695	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	ZNF469	NM_001127464	exon2	c.3731_3732del	p.1244_1244del	.	.	35.0	18.0	9.0	0.0	.	121	.	.	Atlas-INDEL
JAK1	3716	hgsc.bcm.edu	hg19	1	65316546	65316547	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	JAK1	NM_002227	exon12	c.1696_1697insG	p.P566fs	.	.	127.0	12.0	38.0	0.0	.	209	.	.	Atlas-INDEL
HNF1A	6927	hgsc.bcm.edu	hg19	12	121416711	121416714	+	Frame_Shift_Del	DEL	GGGA	GGGA	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	GGGA	GGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	HNF1A	NM_000545	exon1	c.139_142del	p.47_48del	.	.	96.0	33.0	42.0	0.0	.	302	.	.	Atlas-Indel,Pindel
TMEM25	84866	hgsc.bcm.edu	hg19	11	118402863	118402994	+	In_Frame_Del	DEL	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	TMEM25	NM_001144038	exon3	c.71_184del	p.24_62del	.	.	12.0	12.0	0.0	0.0	.	24	.	.	Pindel
CDC27	996	hgsc.bcm.edu	hg19	17	45234594	45234729	+	Frame_Shift_Del	DEL	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	CDC27	NM_001114091	exon6	c.601_631del	p.201_211del	.	.	15.0	15.0	0.0	0.0	.	337	.	.	Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	NCAM1	NM_001242607	wholegene	.	.	.	.	31.0	31.0	0.0	0.0	.	372	.	.	Pindel
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136582246	136582439	+	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	novel		TCGA-DD-A1EB-01A-11D-A12Z-10	TCGA-DD-A1EB-10A-01D-A12Z-10	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	90611290-e44c-438e-91aa-f3b83dae3b71	239524f2-0ff6-4bc9-b813-0bb78ff48919	.	BCLAF1	NM_014739	exon13	c.2758_3016del	p.920_921del	.	.	10.0	10.0	0.0	0.0	.	203	.	.	Pindel
