Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SKI	6497	hgsc.bcm.edu	hg19	1	2234733	2234733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SKI	NM_003036	exon3	c.T1105C	p.C369R	CTGGGCTGTGTTC	.	62.0	4.0	108.0	0.0	.	33	.	.	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	hg19	1	10707949	10707949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CASZ1	NM_001079843	exon16	c.G3406A	p.V1136M	GAGGCACTGACGC	.	57.0	4.0	96.0	0.0	.	150	.	.	Atlas-SNP
CASZ1	54897	hgsc.bcm.edu	hg19	1	10711116	10711116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CASZ1	NM_001079843	exon12	c.A2698G	p.T900A	CTGGGGTGACCTG	.	24.0	5.0	47.0	0.0	.	150	.	.	Atlas-SNP
PRAMEF4	400735	hgsc.bcm.edu	hg19	1	12942113	12942113	+	Missense_Mutation	SNP	C	C	T	rs78698593		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G437A	p.R146Q	GGCTGCCGTCCTC	.	28.0	2.0	59.0	1.0	.	62	.	C|0.750;T|0.250	Atlas-SNP
PADI3	51702	hgsc.bcm.edu	hg19	1	17606886	17606886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PADI3	NM_016233	exon14	c.T1597C	p.S533P	GTGCTCTCCAATA	.	80.0	5.0	183.0	0.0	.	81	.	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	hg19	1	24995725	24995725	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SRRM1	NM_005839	exon14	c.T1851C	p.P617P	TTCACCTCCTCCC	.	124.0	5.0	196.0	0.0	.	81	.	.	Atlas-SNP
GRIK3	2899	hgsc.bcm.edu	hg19	1	37291209	37291209	+	Silent	SNP	G	G	T	rs138685291	byfrequency;alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	GRIK3,caecum,carcinoma,0,2	GRIK3	NM_000831	exon11	c.C1749A	p.I583I	CCTGGCGATGACG	.	37.0	2.0	74.0	0.0	.	195	.	G|1.000;A|0.000	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39934403	39934403	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MACF1	NM_012090	exon92	c.A15693G	p.R5231R	CTGCCGAGGTAAG	.	93.0	4.0	148.0	0.0	.	909	.	.	Atlas-SNP
HECTD3	79654	hgsc.bcm.edu	hg19	1	45469991	45469991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HECTD3	NM_024602	exon17	c.T2201C	p.L734P	CAGGTCAGCAAGT	.	74.0	4.0	143.0	0.0	.	158	.	.	Atlas-SNP
LDLRAD1	388633	hgsc.bcm.edu	hg19	1	54474701	54474701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LDLRAD1	NM_001010978	exon6	c.A572C	p.Q191P	CAGTGCTGTACAT	.	100.0	4.0	176.0	0.0	.	22	.	.	Atlas-SNP
TTC4	7268	hgsc.bcm.edu	hg19	1	55182348	55182348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TTC4	NM_004623	exon2	c.T187C	p.C63R	TTGGCTTGTCTCC	.	46.0	5.0	75.0	0.0	.	21	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86961308	86961308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CLCA1	NM_001285	exon12	c.T2063C	p.V688A	GGAGAGTGATACC	.	91.0	4.0	125.0	0.0	.	109	.	.	Atlas-SNP
ABCD3	5825	hgsc.bcm.edu	hg19	1	94965076	94965076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ABCD3	NM_002858	exon20	c.T1646C	p.V549A	ACAATGTCCAGTT	.	87.0	4.0	132.0	0.0	.	62	.	.	Atlas-SNP
ALG14	199857	hgsc.bcm.edu	hg19	1	95448789	95448789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ALG14	NM_144988	exon4	c.A494G	p.K165R	ACTTTCTTTATTC	.	107.0	5.0	167.0	0.0	.	13	.	.	Atlas-SNP
AHCYL1	10768	hgsc.bcm.edu	hg19	1	110559004	110559004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AHCYL1	NM_006621	exon8	c.C821T	p.P274L	GTGTTCCGGCCAT	.	95.0	4.0	160.0	0.0	.	49	.	.	Atlas-SNP
CEPT1	10390	hgsc.bcm.edu	hg19	1	111702071	111702071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEPT1	NM_006090	exon3	c.G409T	p.G137W	ATTGATGGGAAAC	.	273.0	11.0	345.0	0.0	.	25	.	.	Atlas-SNP
CHD1L	9557	hgsc.bcm.edu	hg19	1	146731569	146731569	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CHD1L	NM_004284	exon6	c.A573G	p.S191S	CTTGTCAGAGGTA	.	40.0	4.0	54.0	0.0	.	72	.	.	Atlas-SNP
PGLYRP4	57115	hgsc.bcm.edu	hg19	1	153317834	153317834	+	Missense_Mutation	SNP	G	G	A	rs200715095		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	PGLYRP4,colon,carcinoma,-1,1	PGLYRP4	NM_020393	exon4	c.C164T	p.T55M	GAGACCGTGGTGG	.	45.0	2.0	85.0	0.0	.	45	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155307890	155307890	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASH1L	NM_018489	exon27	c.T8793C	p.P2931P	TTTTCCAGGGATT	.	75.0	4.0	146.0	0.0	.	279	.	.	Atlas-SNP
GPATCH4	54865	hgsc.bcm.edu	hg19	1	156565484	156565484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPATCH4	NM_015590	exon8	c.A649G	p.K217E	CCTCTTTCTGCCT	.	77.0	4.0	137.0	0.0	.	34	.	.	Atlas-SNP
ILDR2	387597	hgsc.bcm.edu	hg19	1	166891985	166891985	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ILDR2	NM_199351	exon8	c.T1056C	p.S352S	ATGGAAAGACTGG	.	95.0	4.0	148.0	0.0	.	79	.	.	Atlas-SNP
GPR161	23432	hgsc.bcm.edu	hg19	1	168066409	168066409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPR161	NM_001267609	exon4	c.A496G	p.M166V	GTGCCATCACAGC	.	72.0	4.0	102.0	0.0	.	56	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180062484	180062484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP350	NM_014810	exon34	c.A7244G	p.K2415R	GAGATAAGCCACA	.	149.0	6.0	214.0	0.0	.	418	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181759582	181759582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CACNA1E	NM_001205293	exon44	c.A5788G	p.S1930G	TTCAGGAGTGGCC	.	95.0	4.0	143.0	0.0	.	778	.	.	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200572973	200572973	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIF14	NM_014875	exon9	c.A1857G	p.R619R	CTTTAGTCGATCT	.	94.0	4.0	148.0	0.0	.	156	.	.	Atlas-SNP
C1orf131	128061	hgsc.bcm.edu	hg19	1	231360124	231360124	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C1orf131	NM_152379	exon7	c.A783G	p.S261S	TCCATTTGACAAA	.	165.0	9.0	220.0	0.0	.	30	.	.	Atlas-SNP
NTPCR	84284	hgsc.bcm.edu	hg19	1	233105712	233105712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NTPCR	NM_032324	exon4	c.A352G	p.M118V	GGGAAGATGGAGC	.	73.0	4.0	130.0	0.0	.	15	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237789001	237789001	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RYR2	NM_001035	exon40	c.T6063C	p.S2021S	AAACAGTGATTTA	.	114.0	5.0	179.0	0.0	.	1273	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247588783	247588783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NLRP3	NM_183395	exon3	c.T2038C	p.S680P	TCACTGTCCCTGG	.	85.0	4.0	136.0	0.0	.	286	.	.	Atlas-SNP
MFSD2B	388931	hgsc.bcm.edu	hg19	2	24236185	24236185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MFSD2B	NM_001080473	exon2	c.A127G	p.T43A	TTCTGTACAAAGG	.	41.0	4.0	75.0	0.0	.	45	.	.	Atlas-SNP
ABHD1	84696	hgsc.bcm.edu	hg19	2	27351823	27351823	+	Missense_Mutation	SNP	C	C	A	rs370556895	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ABHD1	NM_032604	exon3	c.C286A	p.Q96K	ATCCTCCAAACAC	.	71.0	8.0	103.0	0.0	.	18	.	.	Atlas-SNP
CAPN14	440854	hgsc.bcm.edu	hg19	2	31425080	31425080	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CAPN14	NM_001145122	exon4	c.T334C	p.L112L	GGTGCAAGGCCAG	.	118.0	5.0	164.0	0.0	.	36	.	.	Atlas-SNP
PROKR1	10887	hgsc.bcm.edu	hg19	2	68873336	68873336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PROKR1	NM_138964	exon1	c.T383C	p.L128P	GCCAGCTCTCCTG	.	119.0	5.0	230.0	0.0	.	69	.	.	Atlas-SNP
C2orf78	388960	hgsc.bcm.edu	hg19	2	74042293	74042293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C2orf78	NM_001080474	exon3	c.T943C	p.F315L	AAGTCCTTCAGTA	.	86.0	4.0	141.0	0.0	.	150	.	.	Atlas-SNP
DQX1	165545	hgsc.bcm.edu	hg19	2	74751206	74751206	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DQX1	NM_133637	exon4	c.T660C	p.P220P	CACAATAGGAGGA	.	81.0	4.0	166.0	0.0	.	95	.	.	Atlas-SNP
ZNF2	7549	hgsc.bcm.edu	hg19	2	95843262	95843262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF2	NM_021088	exon3	c.T68C	p.F23S	TGGTTTTCACAGA	.	80.0	5.0	153.0	0.0	.	21	.	.	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96949561	96949561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SNRNP200	NM_014014	exon32	c.T4574C	p.L1525P	ATGTGCAGCTCCA	.	95.0	4.0	132.0	0.0	.	195	.	.	Atlas-SNP
COA5	493753	hgsc.bcm.edu	hg19	2	99217252	99217252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001008215	exon3	c.A188G	p.D63G	CTGTTATCCAACT	.	81.0	4.0	120.0	0.0	.	.	.	.	Atlas-SNP
ZSWIM2	151112	hgsc.bcm.edu	hg19	2	187693106	187693106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZSWIM2	NM_182521	exon9	c.G1507T	p.V503L	ATGACACAGTGGG	.	188.0	25.0	238.0	0.0	.	119	.	.	Atlas-SNP
INHA	3623	hgsc.bcm.edu	hg19	2	220439447	220439447	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	INHA	NM_002191	exon2	c.A300G	p.R100R	TGCCAGAGGGCTG	.	78.0	4.0	113.0	0.0	.	30	.	.	Atlas-SNP
PAX3	5077	hgsc.bcm.edu	hg19	2	223086014	223086014	+	Silent	SNP	A	A	G	rs199847426	bycluster	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PAX3	NM_181457	exon6	c.T885C	p.P295P	AGTGGGAGGGAAC	.	110.0	7.0	127.0	0.0	.	106	.	.	Atlas-SNP
PID1	55022	hgsc.bcm.edu	hg19	2	229890580	229890580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PID1	NM_017933	exon4	c.A515G	p.N172S	CTCACGTTGTGGT	.	99.0	4.0	208.0	0.0	.	43	.	.	Atlas-SNP
IQCA1	79781	hgsc.bcm.edu	hg19	2	237405864	237405864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IQCA1	NM_001270585	exon2	c.T299C	p.L100P	AGTTCCAGCTCCA	.	104.0	5.0	159.0	0.0	.	170	.	.	Atlas-SNP
THUMPD3	25917	hgsc.bcm.edu	hg19	3	9425958	9425958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	THUMPD3	NM_001114092	exon9	c.T1298C	p.V433A	GCCGTGTCTGCAC	.	82.0	4.0	145.0	0.0	.	46	.	.	Atlas-SNP
SLC6A1	6529	hgsc.bcm.edu	hg19	3	11072874	11072874	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC6A1	NM_003042	exon13	c.T1335C	p.Y445Y	TATTTATGTCTTC	.	92.0	5.0	144.0	0.0	.	88	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266610	41266610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CTNNB1	NM_001098209	exon4	c.T407C	p.V136A	ATGCAGTTGTAAA	.	69.0	12.0	77.0	0.0	.	4904	.	.	Atlas-SNP
SACM1L	22908	hgsc.bcm.edu	hg19	3	45744960	45744960	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SACM1L	NM_014016	exon2	c.A63G	p.E21E	TGTGGAAGCTTGT	.	81.0	4.0	137.0	0.0	.	38	.	.	Atlas-SNP
APEH	327	hgsc.bcm.edu	hg19	3	49712710	49712710	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	APEH	NM_001640	exon3	c.A240G	p.G80G	TGCAGGACCTGCA	.	71.0	4.0	129.0	0.0	.	45	.	.	Atlas-SNP
ARF4	378	hgsc.bcm.edu	hg19	3	57563094	57563094	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ARF4	NM_001660	exon4	c.T279C	p.D93D	GTTGCTATCTACC	.	90.0	4.0	175.0	0.0	.	14	.	.	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	hg19	3	62278152	62278152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PTPRG	NM_002841	exon29	c.T4112C	p.L1371P	AGCAACTGGAGAA	.	75.0	4.0	121.0	0.0	.	153	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89499441	89499441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	EPHA3,NS,carcinoma,0,1	EPHA3	NM_005233	exon15	c.T2611C	p.F871L	CCCAAGTTTGAGC	.	104.0	5.0	218.0	1.0	.	501	.	.	Atlas-SNP
CEP97	79598	hgsc.bcm.edu	hg19	3	101445525	101445525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP97	NM_024548	exon2	c.A131G	p.D44G	TTCTGGATAAAAA	.	73.0	4.0	95.0	0.0	.	122	.	.	Atlas-SNP
PARP9	83666	hgsc.bcm.edu	hg19	3	122274538	122274538	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PARP9	NM_031458	exon4	c.T585C	p.H195H	AACAGCATGGATG	.	84.0	4.0	125.0	0.0	.	72	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129370465	129370465	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMCC1	NM_001017395	exon6	c.A1821G	p.V607V	GTTGGCTACAGTG	.	97.0	4.0	197.0	0.0	.	105	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129546875	129546875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMCC1	NM_001017395	exon3	c.A347G	p.K116R	CCTCTCTTCATCT	.	77.0	4.0	144.0	0.0	.	105	.	.	Atlas-SNP
ASTE1	28990	hgsc.bcm.edu	hg19	3	130733158	130733158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASTE1	NM_014065	exon6	c.A1783G	p.S595G	ATATGCTCAGGAG	.	121.0	5.0	225.0	0.0	.	67	.	.	Atlas-SNP
CEP63	80254	hgsc.bcm.edu	hg19	3	134270832	134270832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CEP63	NM_025180	exon13	c.A1445G	p.K482R	TGATGAAATTGGA	.	56.0	4.0	90.0	0.0	.	56	.	.	Atlas-SNP
SLC7A14	57709	hgsc.bcm.edu	hg19	3	170198199	170198199	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC7A14	NM_020949	exon7	c.G1872A	p.K624K	GGGCAGCTTCTTG	.	76.0	4.0	93.0	0.0	.	110	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178943817	178943817	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PIK3CA	NM_006218	exon17	c.T2484C	p.G828G	TCAAGGTCTTGAT	.	75.0	4.0	142.0	0.0	.	8460	.	.	Atlas-SNP
ZNF639	51193	hgsc.bcm.edu	hg19	3	179051221	179051221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF639	NM_016331	exon7	c.A469G	p.N157D	ACAGAAAACAATT	.	152.0	7.0	230.0	0.0	.	45	.	.	Atlas-SNP
TNK2	10188	hgsc.bcm.edu	hg19	3	195611685	195611685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TNK2	NM_001010938	exon4	c.A643G	p.T215A	TCACCGTCTTCCC	.	62.0	4.0	143.0	0.0	.	246	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	hg19	4	629718	629718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PDE6B	NM_001145291	exon3	c.A671G	p.H224R	TCTATCACCTGAG	.	90.0	5.0	124.0	0.0	.	80	.	.	Atlas-SNP
BEND4	389206	hgsc.bcm.edu	hg19	4	42119674	42119674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BEND4	NM_207406	exon6	c.A1466G	p.D489G	ACAGCGTCGCTGA	.	100.0	4.0	143.0	0.0	.	67	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54265995	54265995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FIP1L1	NM_030917	exon10	c.T804C	p.L268L	TGGGCTTCCACCG	.	102.0	5.0	139.0	0.0	.	60	.	.	Atlas-SNP
SULT1E1	6783	hgsc.bcm.edu	hg19	4	70719946	70719946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SULT1E1	NM_005420	exon4	c.A358G	p.K120E	AATCCTTTTCCCA	.	91.0	4.0	167.0	0.0	.	44	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76797575	76797575	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PPEF2	NM_006239	exon11	c.A1185G	p.E395E	CTCCAGTTCCACG	.	62.0	5.0	70.0	0.0	.	108	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	143045901	143045901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	INPP4B	NM_003866	exon20	c.A1733G	p.E578G	AACTGTTCATACC	.	94.0	4.0	102.0	0.0	.	132	.	.	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	hg19	4	145636456	145636456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HHIP	NM_022475	exon10	c.T1552C	p.F518L	AGGAATTTCCTAA	.	95.0	5.0	131.0	0.0	.	100	.	.	Atlas-SNP
ABCE1	6059	hgsc.bcm.edu	hg19	4	146030345	146030345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ABCE1	NM_002940	exon5	c.T349C	p.S117P	GGAAAGTCAACTG	.	57.0	4.0	109.0	0.0	.	47	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151773447	151773447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRBA	NM_006726	exon23	c.T3415C	p.S1139P	CTTCAGATGCAGC	.	141.0	6.0	186.0	0.0	.	253	.	.	Atlas-SNP
SFRP2	6423	hgsc.bcm.edu	hg19	4	154709740	154709740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	SFRP2,NS,carcinoma,0,1	SFRP2	NM_003013	exon1	c.T248C	p.V83A	TTCATGACCAGCG	.	78.0	5.0	131.0	0.0	.	45	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175898801	175898801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADAM29	NM_001130703	exon4	c.G2125A	p.D709N	CAGCAAGATGTTC	.	55.0	4.0	97.0	0.0	.	262	.	.	Atlas-SNP
WWC2	80014	hgsc.bcm.edu	hg19	4	184129212	184129212	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WWC2	NM_024949	exon3	c.A348G	p.E116E	GAAGGAACTGTAC	.	57.0	4.0	89.0	0.0	.	78	.	.	Atlas-SNP
SLC25A4	291	hgsc.bcm.edu	hg19	4	186066951	186066951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC25A4	NM_001151	exon3	c.A637G	p.S213G	TTTGTGAGCTGGA	.	79.0	4.0	130.0	0.0	.	27	.	.	Atlas-SNP
CLPTM1L	81037	hgsc.bcm.edu	hg19	5	1341797	1341797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CLPTM1L	NM_030782	exon3	c.T442C	p.S148P	TATCAGACTCCCC	.	95.0	5.0	134.0	0.0	.	60	.	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5303777	5303777	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADAMTS16	NM_139056	exon20	c.T3084C	p.A1028A	CGACGCTGTCTGC	.	94.0	4.0	110.0	0.0	.	543	.	.	Atlas-SNP
CARD6	84674	hgsc.bcm.edu	hg19	5	40843572	40843572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	CARD6,NS,carcinoma,0,1	CARD6	NM_032587	exon2	c.A602G	p.E201G	GATATGAGGAGCT	.	73.0	3.0	75.0	0.0	.	141	.	.	Atlas-SNP
MOCS2	4338	hgsc.bcm.edu	hg19	5	52402917	52402917	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MOCS2	NM_004531	exon3	c.G88T	p.E30X	ATGGCTCAAAAGC	.	58.0	12.0	91.0	0.0	.	28	.	.	Atlas-SNP
SV2C	22987	hgsc.bcm.edu	hg19	5	75587051	75587051	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SV2C	NM_014979	exon7	c.C1143T	p.N381N	GGTAAACAAAATA	.	113.0	5.0	152.0	0.0	.	97	.	.	Atlas-SNP
POU5F2	134187	hgsc.bcm.edu	hg19	5	93076777	93076777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	POU5F2	NM_153216	exon1	c.T493G	p.C165G	AGCGGCAGATGGT	.	45.0	7.0	71.0	0.0	.	10	.	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	hg19	5	93964624	93964624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ANKRD32	NM_032290	exon2	c.A109G	p.S37G	ATTAAGAGTGAGG	.	83.0	4.0	103.0	0.0	.	117	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127712455	127712455	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBN2	NM_001999	exon14	c.T1941C	p.F647F	CAAGACAAATCCT	.	85.0	4.0	160.0	0.0	.	858	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130769307	130769307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RAPGEF6	NM_001164387	exon27	c.T3829C	p.S1277P	GGCTGGAGTCAGA	.	74.0	4.0	101.0	0.0	.	361	.	.	Atlas-SNP
AFF4	27125	hgsc.bcm.edu	hg19	5	132222022	132222022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AFF4	NM_014423	exon18	c.A3079G	p.T1027A	TCAGTGTCTTTGA	.	118.0	5.0	224.0	0.0	.	120	.	.	Atlas-SNP
JAKMIP2	9832	hgsc.bcm.edu	hg19	5	147040867	147040867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	JAKMIP2	NM_001270941	exon3	c.A271G	p.N91D	TAAGGTTCTCCCT	.	100.0	4.0	163.0	0.0	.	154	.	.	Atlas-SNP
LMAN2	10960	hgsc.bcm.edu	hg19	5	176778206	176778206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LMAN2	NM_006816	exon2	c.C283T	p.R95C	TGCTGCGCTCGTC	.	49.0	4.0	106.0	0.0	.	35	.	.	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176829426	176829426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	F12,NS,carcinoma,0,1	F12	NM_000505	exon14	c.A1715G	p.Q572R	GCAGCTTGGTCCT	.	42.0	2.0	75.0	0.0	.	35	.	.	Atlas-SNP
RIPK1	8737	hgsc.bcm.edu	hg19	6	3105913	3105913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RIPK1	NM_003804	exon8	c.A1204G	p.N402D	AGACAGAATGTGG	.	114.0	5.0	171.0	0.0	.	56	.	.	Atlas-SNP
GFOD1	54438	hgsc.bcm.edu	hg19	6	13487004	13487004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GFOD1	NM_018988	exon1	c.A119G	p.E40G	AGCTCCTCCGCTT	.	78.0	4.0	83.0	0.0	.	38	.	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	hg19	6	31603241	31603241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRRC2A	NM_004638	exon23	c.A5372G	p.E1791G	TCACTGAGGTAAG	.	98.0	4.0	168.0	0.0	.	152	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72960073	72960073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RIMS1	NM_014989	exon13	c.T2282C	p.V761A	TGATTGTAAATGT	.	95.0	4.0	174.0	0.0	.	278	.	.	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97627437	97627437	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MMS22L	NM_198468	exon18	c.2385-2A>G	.	ATGTGCTGTAGAA	.	55.0	4.0	61.0	0.0	.	102	.	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117718268	117718268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ROS1	NM_002944	exon7	c.G589A	p.A197T	AAGGTGCAGTTTC	.	96.0	4.0	158.0	0.0	.	728	.	.	Atlas-SNP
AIMP2	7965	hgsc.bcm.edu	hg19	7	6063115	6063115	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	AIMP2	NM_006303	exon4	c.A756G	p.K252K	AGAAAAAGCCGCT	.	94.0	6.0	174.0	0.0	.	32	.	.	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	hg19	7	24849448	24849448	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OSBPL3	NM_015550	exon20	c.T2295C	p.S765S	GGCAGAAGAGGAG	.	70.0	4.0	125.0	0.0	.	100	.	.	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	hg19	7	31683097	31683097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CCDC129	NM_001257968	exon11	c.T2191C	p.S731P	GGCAGCTCCAGGT	.	98.0	5.0	149.0	0.0	.	127	.	.	Atlas-SNP
CAMK2B	816	hgsc.bcm.edu	hg19	7	44279251	44279251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CAMK2B	NM_172082	exon13	c.A958G	p.T320A	CGGTGGTCTGTCT	.	35.0	4.0	69.0	0.0	.	56	.	.	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	hg19	7	55249014	55249014	+	Missense_Mutation	SNP	A	A	G	rs121913445	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.,3	EGFR	NM_005228	exon20	c.A2312G	p.N771S	TGGACAACCCCCA	.	48.0	3.0	76.0	0.0	.	20426	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	71142270	71142270	+	Silent	SNP	G	G	A	rs145007893		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	WBSCR17,rectum,carcinoma,+2,1	WBSCR17	NM_022479	exon9	c.G1479A	p.P493P	GTATCCGTGCCAT	.	50.0	3.0	77.0	0.0	.	208	.	G|1.000;A|0.000	Atlas-SNP
CCL24	6369	hgsc.bcm.edu	hg19	7	75442715	75442715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CCL24	NM_002991	exon2	c.T100C	p.C34R	ACATGCAGCAGGG	.	31.0	4.0	55.0	0.0	.	11	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83610694	83610694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SEMA3A	NM_006080	exon14	c.A1595G	p.D532G	TAAGGGTCTCGGG	.	88.0	5.0	120.0	0.0	.	121	.	.	Atlas-SNP
RINT1	60561	hgsc.bcm.edu	hg19	7	105205724	105205724	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RINT1	NM_021930	exon13	c.A1887G	p.R629R	TTCCAGATGGTTG	.	101.0	5.0	126.0	0.0	.	65	.	.	Atlas-SNP
HBP1	26959	hgsc.bcm.edu	hg19	7	106836396	106836396	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HBP1	NM_001244262	exon9	c.A1215G	p.G405G	ATCTGGATTCAGT	.	123.0	5.0	186.0	0.0	.	31	.	.	Atlas-SNP
STRIP2	57464	hgsc.bcm.edu	hg19	7	129079892	129079892	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_020704	exon2	c.T159C	p.F53F	GGAGTTTGAGTAT	.	169.0	7.0	267.0	0.0	.	.	.	.	Atlas-SNP
EZH2	2146	hgsc.bcm.edu	hg19	7	148507486	148507486	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	EZH2_ENST00000350995,colon,carcinoma,0,2	EZH2	NM_004456	exon17	c.T1968C	p.A656A	TCTGTCAGCTTCA	.	42.0	2.0	53.0	0.0	.	823	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149500388	149500388	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_198455	exon53	c.C7914T	p.S2638S	ACCCTCCTGCCTG	.	39.0	5.0	48.0	0.0	.	.	.	.	Atlas-SNP
ASIC3	9311	hgsc.bcm.edu	hg19	7	150748946	150748946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_020322	exon7	c.A1264G	p.T422A	TATGAGACCGTGG	.	89.0	5.0	144.0	0.0	.	.	.	.	Atlas-SNP
ANGPT2	285	hgsc.bcm.edu	hg19	8	6420324	6420324	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ANGPT2	NM_001118888	exon1	c.T132C	p.T44T	GAGGAAAGTGTAG	.	92.0	4.0	195.0	0.0	.	126	.	.	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	hg19	8	17579296	17579296	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MTUS1	NM_001001931	exon1	c.T115C	p.L39L	TCAATAAGGTAGC	.	97.0	4.0	168.0	0.0	.	144	.	.	Atlas-SNP
SLC39A14	23516	hgsc.bcm.edu	hg19	8	22273319	22273319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC39A14	NM_001135153	exon6	c.T788C	p.L263P	AGTCGCTTCCCTC	.	58.0	4.0	66.0	0.0	.	59	.	.	Atlas-SNP
LRRCC1	85444	hgsc.bcm.edu	hg19	8	86022370	86022370	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRRCC1	NM_033402	exon3	c.C331T	p.L111L	ATTAATCTGACTA	.	107.0	22.0	123.0	0.0	.	212	.	.	Atlas-SNP
TSPYL5	85453	hgsc.bcm.edu	hg19	8	98288873	98288873	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TSPYL5	NM_033512	exon1	c.T1200C	p.G400G	TCCTGGACCTTGC	.	157.0	7.0	219.0	0.0	.	48	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125094661	125094661	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FER1L6	NM_001039112	exon33	c.A4353G	p.K1451K	CAGCAAACACCGA	.	71.0	4.0	100.0	0.0	.	268	.	.	Atlas-SNP
SPATA6L	55064	hgsc.bcm.edu	hg19	9	4604223	4604223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SPATA6L	NM_001039395	exon10	c.A962G	p.Y321C	AGAGGGTAGCTTG	.	111.0	6.0	155.0	0.0	.	3	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13150535	13150535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MPDZ	NM_003829	exon25	c.T3605C	p.L1202S	GGTTTCAAGGTTC	.	89.0	5.0	157.0	0.0	.	324	.	.	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	hg19	9	75403363	75403363	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMC1	NM_138691	exon14	c.A993G	p.A331A	AACAGCAGACAAC	.	90.0	4.0	122.0	0.0	.	87	.	.	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96429513	96429513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PHF2	NM_005392	exon17	c.A2339G	p.N780S	AGTACAACCCCAG	.	46.0	5.0	80.0	0.0	.	113	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114184313	114184313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIAA0368	NM_001080398	exon16	c.A1877G	p.E626G	CGAGTCTCAGGCT	.	79.0	4.0	113.0	0.0	.	144	.	.	Atlas-SNP
FKBP15	23307	hgsc.bcm.edu	hg19	9	115931901	115931901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FKBP15	NM_015258	exon26	c.T3088C	p.S1030P	TGCAAGACAGTTC	.	82.0	4.0	155.0	0.0	.	128	.	.	Atlas-SNP
PRPF4	9128	hgsc.bcm.edu	hg19	9	116053283	116053283	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRPF4	NM_004697	exon13	c.T1362C	p.G454G	GACTGGTGTCAAG	.	89.0	4.0	170.0	0.0	.	56	.	.	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	hg19	9	119625906	119625906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASTN2	NM_014010	exon10	c.T1843C	p.F615L	ACTTGAAGTTGCG	.	82.0	6.0	119.0	0.0	.	307	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123874744	123874744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CNTRL	NM_007018	exon7	c.A1010G	p.Q337R	TAAAACAGAAGAC	.	76.0	4.0	133.0	0.0	.	161	.	.	Atlas-SNP
ASS1	445	hgsc.bcm.edu	hg19	9	133364729	133364729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ASS1	NM_054012	exon12	c.A848G	p.E283G	TCTACGAGACCCC	.	59.0	5.0	104.0	0.0	.	37	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134020110	134020110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NUP214	NM_005085	exon12	c.A1738G	p.T580A	CCCTCAACCTCTG	.	99.0	5.0	201.0	0.0	.	166	.	.	Atlas-SNP
NDOR1	27158	hgsc.bcm.edu	hg19	9	140110580	140110580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NDOR1	NM_001144026	exon13	c.A1616G	p.E539G	TCCGGGAGCTGGG	.	53.0	4.0	95.0	0.0	.	71	.	.	Atlas-SNP
KLF6	1316	hgsc.bcm.edu	hg19	10	3824046	3824046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KLF6	NM_001160125	exon2	c.A463G	p.S155G	CCCTGCTCAGTTC	.	68.0	4.0	87.0	0.0	.	38	.	.	Atlas-SNP
BEND7	222389	hgsc.bcm.edu	hg19	10	13541881	13541881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BEND7	NM_001100912	exon2	c.T189C	p.G63G	CCACACACCACGT	.	118.0	7.0	188.0	0.0	.	85	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17024537	17024537	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUBN	NM_001081	exon31	c.T4641C	p.R1547R	GAGAACACGATGA	.	58.0	7.0	87.0	0.0	.	515	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17153015	17153015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CUBN	NM_001081	exon9	c.C918G	p.I306M	TTCATTGATATCT	.	65.0	11.0	109.0	0.0	.	515	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	50149852	50149852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	WDFY4	NM_020945	exon48	c.A7588G	p.R2530G	CACAGGAGATACC	.	94.0	4.0	143.0	0.0	.	205	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50530756	50530756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	C10orf71	NM_001135196	exon3	c.T166C	p.S56P	GCTGTGTCCCCGG	.	94.0	4.0	135.0	0.0	.	179	.	.	Atlas-SNP
NCOA4	8031	hgsc.bcm.edu	hg19	10	51582886	51582886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	NCOA4_ENST00000452682,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	NCOA4	NM_001145261	exon8	c.A709G	p.S237G	ATACCCAGCACCG	.	47.0	2.0	96.0	0.0	.	58	.	.	Atlas-SNP
SGMS1	259230	hgsc.bcm.edu	hg19	10	52071024	52071024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SGMS1	NM_147156	exon9	c.A893G	p.E298G	TTACACTCTTTGA	.	57.0	4.0	89.0	0.0	.	40	.	.	Atlas-SNP
HK1	3098	hgsc.bcm.edu	hg19	10	71144583	71144583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	HK1	NM_033498	exon15	c.A1763G	p.D588G	TCTCTGACTTCTT	.	78.0	4.0	144.0	0.0	.	170	.	.	Atlas-SNP
TSPAN15	23555	hgsc.bcm.edu	hg19	10	71255355	71255355	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TSPAN15	NM_012339	exon4	c.T363C	p.I121I	GACCATTGACTTC	.	86.0	4.0	152.0	0.0	.	22	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73375278	73375278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CDH23	NM_052836	exon10	c.T850C	p.F284L	AGCATCTTTGCCC	.	72.0	4.0	117.0	0.0	.	365	.	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	hg19	10	93718881	93718881	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BTAF1	NM_003972	exon9	c.T960C	p.G320G	AAGTGGTGGTAAA	.	90.0	4.0	183.0	0.0	.	148	.	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	hg19	10	96076426	96076426	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PLCE1	NM_016341	exon29	c.T6255C	p.G2085G	CATTGGTCCAGAA	.	100.0	4.0	118.0	0.0	.	543	.	.	Atlas-SNP
DNMBP	23268	hgsc.bcm.edu	hg19	10	101668878	101668878	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DNMBP	NM_015221	exon5	c.T2286C	p.S762S	TGATGAAGACTGG	.	84.0	4.0	121.0	0.0	.	173	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134672635	134672635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TTC40	NM_001200049	exon38	c.T5315C	p.I1772T	CAGTCGATAAACT	.	74.0	4.0	162.0	0.0	.	100	.	.	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2438955	2438955	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TRPM5	NM_014555	exon8	c.1009+2T>C	.	GCCCTCACCTTTC	.	63.0	4.0	94.0	0.0	.	86	.	.	Atlas-SNP
CHRNA10	57053	hgsc.bcm.edu	hg19	11	3687610	3687610	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	CHRNA10,colon,carcinoma,0,1	CHRNA10	NM_020402	exon5	c.C1080T	p.S360S	TGGCCTGGACTGC	.	32.0	2.0	48.0	0.0	.	31	.	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	hg19	11	3720345	3720345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NUP98	NM_016320	exon25	c.A3976G	p.I1326V	CACTGATCCTTTT	.	94.0	8.0	139.0	0.0	.	149	.	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	hg19	11	3746442	3746442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NUP98	NM_005387	exon15	c.A1789G	p.I597V	TCTTAATGCTCTT	.	88.0	4.0	117.0	0.0	.	149	.	.	Atlas-SNP
ANO3	63982	hgsc.bcm.edu	hg19	11	26656592	26656592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ANO3	NM_031418	exon20	c.T2018C	p.L673P	ATAAACTTTTTGA	.	112.0	5.0	212.0	0.0	.	145	.	.	Atlas-SNP
OR5M9	390162	hgsc.bcm.edu	hg19	11	56230291	56230291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OR5M9	NM_001004743	exon1	c.C587T	p.T196I	ATCATTGTGATTT	.	79.0	4.0	106.0	0.0	.	75	.	.	Atlas-SNP
OR5B2	390190	hgsc.bcm.edu	hg19	11	58190477	58190477	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OR5B2	NM_001005566	exon1	c.A258G	p.G86G	CTTGTCTCCTCTA	.	89.0	6.0	136.0	0.0	.	75	.	.	Atlas-SNP
METTL12	751071	hgsc.bcm.edu	hg19	11	62434058	62434058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	METTL12	NM_001043229	exon3	c.T258C	p.T86T	TGGGACTTCCAGC	.	77.0	5.0	87.0	0.0	.	11	.	.	Atlas-SNP
SLC25A45	283130	hgsc.bcm.edu	hg19	11	65147388	65147388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC25A45	NM_182556	exon4	c.A103G	p.T35A	GGTAGGTGGTCTG	.	63.0	4.0	102.0	0.0	.	23	.	.	Atlas-SNP
FCHSD2	9873	hgsc.bcm.edu	hg19	11	72551945	72551945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FCHSD2	NM_014824	exon19	c.A2116G	p.T706A	ATGAGGTCTCAGG	.	61.0	5.0	105.0	0.0	.	106	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73073127	73073127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ARHGEF17	NM_014786	exon13	c.T4537C	p.S1513P	GAGCCCTCGCCTG	.	51.0	5.0	113.0	0.0	.	117	.	.	Atlas-SNP
ESAM	90952	hgsc.bcm.edu	hg19	11	124624658	124624658	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ESAM	NM_138961	exon5	c.T609C	p.D203D	GATGACATCTGTG	.	88.0	5.0	124.0	0.0	.	31	.	.	Atlas-SNP
KIRREL3	84623	hgsc.bcm.edu	hg19	11	126318909	126318909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIRREL3	NM_032531	exon8	c.T992C	p.V331A	CAGTAGACGTCAA	.	54.0	4.0	68.0	0.0	.	183	.	.	Atlas-SNP
NTF3	4908	hgsc.bcm.edu	hg19	12	5603792	5603792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	NTF3,NS,carcinoma,-1,2	NTF3	NM_001102654	exon2	c.C451T	p.R151W	CGGAAACGGTACG	.	41.0	2.0	70.0	0.0	.	50	.	.	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	hg19	12	15654901	15654901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PTPRO	NM_002848	exon5	c.T1009C	p.S337P	TCAGGCTCTTTCT	.	95.0	4.0	129.0	0.0	.	148	.	.	Atlas-SNP
REP15	387849	hgsc.bcm.edu	hg19	12	27849605	27849605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	REP15,right_upper_lobe,carcinoma,0,1	REP15	NM_001029874	exon1	c.A110G	p.E37G	TGAAGGAGTACCT	.	73.0	3.0	82.0	0.0	.	13	.	.	Atlas-SNP
PDZRN4	29951	hgsc.bcm.edu	hg19	12	41967381	41967381	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	PDZRN4,colon,carcinoma,0,1	PDZRN4	NM_001164595	exon10	c.G2800T	p.E934X	ATGAGCGAGATGA	.	44.0	2.0	82.0	0.0	.	346	.	.	Atlas-SNP
ADCY6	112	hgsc.bcm.edu	hg19	12	49177177	49177177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ADCY6	NM_020983	exon2	c.A41G	p.E14G	TTCCGTTCATCCA	.	66.0	4.0	113.0	0.0	.	81	.	.	Atlas-SNP
TUBA1B	10376	hgsc.bcm.edu	hg19	12	49522077	49522077	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TUBA1B	NM_006082	exon4	c.C1020T	p.S340S	CTGGATGCTGCGC	.	182.0	32.0	282.0	0.0	.	24	.	.	Atlas-SNP
SCN8A	6334	hgsc.bcm.edu	hg19	12	52056675	52056675	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SCN8A	NM_014191	exon2	c.T74G	p.I25S	CAAACATTGAGAG	.	52.0	4.0	66.0	0.0	.	331	.	.	Atlas-SNP
EIF4B	1975	hgsc.bcm.edu	hg19	12	53413702	53413702	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	EIF4B	NM_001417	exon4	c.A369G	p.A123A	CAGTGCAGTGCGT	.	97.0	4.0	156.0	0.0	.	38	.	.	Atlas-SNP
CD63	967	hgsc.bcm.edu	hg19	12	56120684	56120684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CD63	NM_001257390	exon4	c.T320C	p.F107S	TCTCTAAACACAT	.	91.0	4.0	127.0	0.0	.	13	.	.	Atlas-SNP
DGKA	1606	hgsc.bcm.edu	hg19	12	56345833	56345833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DGKA	NM_201554	exon19	c.T1602C	p.A534A	TATTGCTCATCGA	.	73.0	5.0	121.0	0.0	.	70	.	.	Atlas-SNP
PMEL	6490	hgsc.bcm.edu	hg19	12	56355450	56355450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PMEL	NM_001200054	exon2	c.T143C	p.L48P	GGATACAGCTGCC	.	88.0	4.0	125.0	0.0	.	60	.	.	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	hg19	12	57865654	57865654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GLI1	NM_005269	exon12	c.A3131G	p.N1044S	TTGACAACACTCA	.	77.0	4.0	120.0	0.0	.	141	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	71016408	71016408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PTPRB	NM_001109754	exon3	c.T470C	p.V157A	ACCGAAACTTCTG	.	85.0	4.0	124.0	0.0	.	676	.	.	Atlas-SNP
PWP1	11137	hgsc.bcm.edu	hg19	12	108105903	108105903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PWP1	NM_007062	exon15	c.G1412A	p.G471E	CATTTGGAAGACG	.	94.0	4.0	130.0	0.0	.	43	.	.	Atlas-SNP
USP30	84749	hgsc.bcm.edu	hg19	12	109522828	109522828	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	USP30	NM_032663	exon12	c.A1239G	p.P413P	ATTGCCAACGCTG	.	49.0	5.0	67.0	0.0	.	48	.	.	Atlas-SNP
ATP2A2	488	hgsc.bcm.edu	hg19	12	110784133	110784133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATP2A2	NM_170665	exon20	c.A2987G	p.E996G	GTAAAGAGTGTGT	.	80.0	4.0	153.0	0.0	.	78	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116413459	116413459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MED13L	NM_015335	exon24	c.G5449A	p.G1817S	CCTCACCAAACGT	.	75.0	4.0	138.0	0.0	.	193	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130184598	130184598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMEM132D	NM_133448	exon2	c.A725G	p.E242G	GCGTCTTCCCTGA	.	93.0	4.0	124.0	0.0	.	299	.	.	Atlas-SNP
ULK1	8408	hgsc.bcm.edu	hg19	12	132404542	132404542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ULK1	NM_003565	exon26	c.A2822G	p.E941G	TGAATGAGCTGTA	.	91.0	4.0	127.0	0.0	.	92	.	.	Atlas-SNP
B3GALTL	145173	hgsc.bcm.edu	hg19	13	31850851	31850851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	B3GALTL	NM_194318	exon10	c.A793G	p.K265E	CCAGTGAAGAAGA	.	62.0	4.0	91.0	0.0	.	48	.	.	Atlas-SNP
N4BP2L2	10443	hgsc.bcm.edu	hg19	13	33111159	33111159	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	N4BP2L2	NM_033111	exon2	c.T6C	p.S2S	ACCATAAGACATC	.	50.0	4.0	78.0	0.0	.	90	.	.	Atlas-SNP
ALG5	29880	hgsc.bcm.edu	hg19	13	37524168	37524168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ALG5	NM_013338	exon10	c.T886C	p.W296R	GTAGCCAGCTCCA	.	56.0	4.0	52.0	0.0	.	28	.	.	Atlas-SNP
SUGT1	10910	hgsc.bcm.edu	hg19	13	53237230	53237230	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SUGT1	NM_001130912	exon8	c.479-1G>C	.	TTAATAGGCTCAG	.	187.0	16.0	278.0	0.0	.	37	.	.	Atlas-SNP
TDRD3	81550	hgsc.bcm.edu	hg19	13	61102826	61102826	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TDRD3	NM_001146070	exon11	c.T1467C	p.S489S	AGGTTCTCAGCAT	.	85.0	4.0	115.0	0.0	.	123	.	.	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	hg19	13	98637853	98637853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IPO5	NM_002271	exon6	c.C404T	p.A135V	AACTGGCCAGGAA	.	124.0	5.0	156.0	0.0	.	90	.	.	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	hg19	13	99063059	99063059	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FARP1	NM_005766	exon15	c.T1674C	p.D558D	GAAGGATCTCGAA	.	148.0	6.0	224.0	0.0	.	207	.	.	Atlas-SNP
CHAMP1	283489	hgsc.bcm.edu	hg19	13	115089644	115089644	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001164144	exon3	c.T327C	p.P109P	AAGCCCTCCTCTT	.	158.0	24.0	268.0	0.0	.	.	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23862189	23862189	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MYH6	NM_002471	exon24	c.G3183A	p.L1061L	CAGCTTCAGGTCG	.	93.0	4.0	121.0	0.0	.	274	.	.	Atlas-SNP
EIF2S1	1965	hgsc.bcm.edu	hg19	14	67841207	67841207	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	EIF2S1	NM_004094	exon3	c.A264G	p.R88R	AAAAAGAAGAGTT	.	97.0	4.0	196.0	0.0	.	17	.	.	Atlas-SNP
RBM25	58517	hgsc.bcm.edu	hg19	14	73569996	73569996	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RBM25	NM_021239	exon10	c.A964C	p.R322R	CGAGAAAGGCGAG	.	94.0	4.0	194.0	0.0	.	81	.	.	Atlas-SNP
CPSF2	53981	hgsc.bcm.edu	hg19	14	92621560	92621560	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CPSF2	NM_017437	exon11	c.T1335C	p.G445G	GAAAGGTGAAGGC	.	117.0	5.0	135.0	0.0	.	63	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94038391	94038391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	UNC79	NM_020818	exon15	c.T1376C	p.V459A	CAGAAGTCCCAGA	.	46.0	4.0	75.0	0.0	.	366	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94088335	94088335	+	Missense_Mutation	SNP	A	A	G	rs149602204		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	UNC79,NS,carcinoma,0,2	UNC79	NM_020818	exon30	c.A4225G	p.M1409V	AACTGTATGGAGA	.	95.0	4.0	165.0	0.0	.	366	.	A|1.000;G|0.000	Atlas-SNP
DDX24	57062	hgsc.bcm.edu	hg19	14	94528810	94528810	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DDX24	NM_020414	exon3	c.A876G	p.E292E	CTCAGCTTCAGCC	.	86.0	4.0	126.0	0.0	.	82	.	.	Atlas-SNP
RCOR1	23186	hgsc.bcm.edu	hg19	14	103173693	103173693	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RCOR1	NM_015156	exon5	c.T504C	p.L168L	GGCTCTTGGGATG	.	83.0	4.0	141.0	0.0	.	39	.	.	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	hg19	14	103438401	103438401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CDC42BPB	NM_006035	exon13	c.T1739C	p.L580P	TCGTTCAGCTCCG	.	73.0	4.0	168.0	0.0	.	123	.	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	hg19	14	105344813	105344813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001112726	exon5	c.A308G	p.H103R	TGCAGCACCGAGT	.	51.0	4.0	66.0	0.0	.	.	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34130147	34130147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RYR3	NM_001036	exon89	c.A11966G	p.D3989G	CCAAGGACATAGG	.	137.0	6.0	184.0	0.0	.	760	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48712988	48712988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBN1	NM_000138	exon63	c.A7715G	p.E2572G	TTACCCTCACACT	.	41.0	4.0	46.0	0.0	.	310	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48752514	48752514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBN1	NM_000138	exon43	c.A5225G	p.D1742G	AACTCATCTGCAA	.	72.0	5.0	87.0	0.0	.	310	.	.	Atlas-SNP
USP50	373509	hgsc.bcm.edu	hg19	15	50833284	50833284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	USP50	NM_203494	exon4	c.T622C	p.S208P	GGAGTGAGAAGAC	.	103.0	5.0	164.0	0.0	.	24	.	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	hg19	15	60742037	60742037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NARG2	NM_024611	exon10	c.T1129C	p.S377P	CACAGGACATCTT	.	56.0	4.0	77.0	0.0	.	82	.	.	Atlas-SNP
CYP1A2	1544	hgsc.bcm.edu	hg19	15	75047231	75047231	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CYP1A2	NM_000761	exon7	c.T1353C	p.F451F	GCTGTTTGGCATG	.	64.0	8.0	151.0	0.0	.	70	.	.	Atlas-SNP
SNX33	257364	hgsc.bcm.edu	hg19	15	75941871	75941871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SNX33	NM_153271	exon1	c.T428C	p.L143P	CTCCCCTCAACCT	.	78.0	6.0	104.0	0.0	.	43	.	.	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79307690	79307690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RASGRF1	NM_001145648	exon13	c.T1805C	p.V602A	ACAGTGACCTTGG	.	79.0	6.0	124.0	0.0	.	168	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89402123	89402123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	AGC1,NS,carcinoma,0,2	ACAN	NM_001135	exon12	c.A6307G	p.T2103A	AGTGAGACGTCCG	.	43.0	3.0	62.0	0.0	.	220	.	.	Atlas-SNP
PLIN1	5346	hgsc.bcm.edu	hg19	15	90210343	90210343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PLIN1	NM_001145311	exon8	c.A1033G	p.T345A	TGGTGGTCTGGAG	.	97.0	4.0	126.0	0.0	.	36	.	.	Atlas-SNP
IDH2	3418	hgsc.bcm.edu	hg19	15	90628063	90628063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IDH2	NM_002168	exon10	c.T1256C	p.I419T	CCGTGAATGCAGC	.	69.0	4.0	87.0	0.0	.	1372	.	.	Atlas-SNP
TPSG1	25823	hgsc.bcm.edu	hg19	16	1271981	1271981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TPSG1	NM_012467	exon6	c.T773C	p.V258A	GCAGGGACACGAG	.	80.0	7.0	146.0	0.0	.	19	.	.	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	hg19	16	16308279	16308279	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ABCC6	NM_001171	exon5	c.C502G	p.L168V	TGGACAGGTGGCG	.	159.0	7.0	277.0	0.0	.	110	.	.	Atlas-SNP
TMC5	79838	hgsc.bcm.edu	hg19	16	19505602	19505602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMC5	NM_001105248	exon20	c.T2845C	p.F949L	AAAATGTTCCTGA	.	84.0	5.0	194.0	0.0	.	169	.	.	Atlas-SNP
CCP110	9738	hgsc.bcm.edu	hg19	16	19556463	19556463	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CCP110	NM_001199022	exon10	c.T2634C	p.D878D	AATGGATGCAGCT	.	78.0	4.0	118.0	0.0	.	57	.	.	Atlas-SNP
ZNF720	124411	hgsc.bcm.edu	hg19	16	31734663	31734663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF720	NM_001130913	exon3	c.C215T	p.A72V	CAGTAGCCATCCA	.	77.0	4.0	121.0	0.0	.	15	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31926978	31926978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF267	NM_003414	exon4	c.A1408G	p.S470G	GTATGTAGCAAAT	.	85.0	4.0	118.0	0.0	.	94	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48596262	48596262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	N4BP1	NM_153029	exon2	c.T292C	p.F98L	TCAGAAACAGGCT	.	99.0	4.0	162.0	0.0	.	121	.	.	Atlas-SNP
NUP93	9688	hgsc.bcm.edu	hg19	16	56852599	56852599	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NUP93	NM_014669	exon6	c.A513G	p.G171G	TGTGGGACCCCCT	.	86.0	5.0	155.0	0.0	.	75	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58576414	58576414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CNOT1	NM_016284	exon32	c.A4493G	p.D1498G	CAATTGTCCTGAG	.	125.0	5.0	248.0	0.0	.	359	.	.	Atlas-SNP
COG8	84342	hgsc.bcm.edu	hg19	16	69368967	69368967	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	COG8	NM_032382	exon3	c.T870C	p.R290R	GATGGCACGGTAC	.	96.0	4.0	172.0	0.0	.	32	.	.	Atlas-SNP
TXNL4B	54957	hgsc.bcm.edu	hg19	16	72120695	72120695	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TXNL4B	NM_001142318	exon4	c.A291G	p.P97P	GTGATCTGGAGAT	.	109.0	5.0	157.0	0.0	.	17	.	.	Atlas-SNP
DHX38	9785	hgsc.bcm.edu	hg19	16	72135463	72135463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DHX38	NM_014003	exon11	c.A1451G	p.E484G	AGAAGGAGGAAGA	.	74.0	5.0	119.0	0.0	.	91	.	.	Atlas-SNP
ZC3H18	124245	hgsc.bcm.edu	hg19	16	88666240	88666240	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZC3H18	NM_144604	exon6	c.T972C	p.D324D	GCCTGATTTTGAA	.	64.0	4.0	106.0	0.0	.	90	.	.	Atlas-SNP
FBXO39	162517	hgsc.bcm.edu	hg19	17	6690124	6690124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FBXO39	NM_153230	exon3	c.A1049G	p.N350S	ACAACAACCATGA	.	114.0	5.0	177.0	0.0	.	50	.	.	Atlas-SNP
ALOXE3	59344	hgsc.bcm.edu	hg19	17	8006758	8006758	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ALOXE3	NM_001165960	exon15	c.A2235G	p.P745P	CTGGGGTGGGGGC	.	117.0	5.0	167.0	0.0	.	145	.	.	Atlas-SNP
ULK2	9706	hgsc.bcm.edu	hg19	17	19705089	19705089	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ULK2	NM_014683	exon17	c.1441+1G>T	.	TACTTACCCAAAG	.	71.0	8.0	98.0	0.0	.	142	.	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28378143	28378143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	EFCAB5,colon,carcinoma,0,1	EFCAB5	NM_198529	exon9	c.T1208C	p.F403S	TAGGGTTTTTGGA	.	68.0	3.0	140.0	0.0	.	122	.	.	Atlas-SNP
TCAP	8557	hgsc.bcm.edu	hg19	17	37822111	37822111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TCAP	NM_003673	exon2	c.T253C	p.Y85H	CTGCCCTACCAGC	.	43.0	8.0	56.0	0.0	.	12	.	.	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41228506	41228506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	BRCA1	NM_007300	exon14	c.A4546G	p.R1516G	CTTACCTTTCCAC	.	84.0	4.0	161.0	0.0	.	304	.	.	Atlas-SNP
STXBP4	252983	hgsc.bcm.edu	hg19	17	53155463	53155463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	STXBP4	NM_178509	exon14	c.A1213G	p.R405G	AAAAAGAGAATCA	.	121.0	5.0	154.0	0.0	.	41	.	.	Atlas-SNP
ANKFN1	162282	hgsc.bcm.edu	hg19	17	54428134	54428134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	ANKFN1,rectum,carcinoma,0,1	ANKFN1	NM_153228	exon4	c.C205T	p.R69C	AATTGTCGTGTGA	.	49.0	2.0	106.0	0.0	.	115	.	.	Atlas-SNP
SEPT4	5414	hgsc.bcm.edu	hg19	17	56598359	56598359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SEPT4	NM_001256782	exon11	c.A1322G	p.N441S	TCATACTTGCGAT	.	94.0	5.0	152.0	0.0	.	48	.	.	Atlas-SNP
SLC39A11	201266	hgsc.bcm.edu	hg19	17	71027829	71027829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC39A11	NM_001159770	exon4	c.T172C	p.S58P	GAAGAGACCAATA	.	64.0	5.0	125.0	0.0	.	32	.	.	Atlas-SNP
OTOP3	347741	hgsc.bcm.edu	hg19	17	72939421	72939421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	OTOP3	NM_178233	exon4	c.T668C	p.V223A	TTCGGGTCCAGAC	.	100.0	4.0	137.0	0.0	.	64	.	.	Atlas-SNP
UNK	85451	hgsc.bcm.edu	hg19	17	73820373	73820373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	UNK_ENST00000293218,NS,carcinoma,0,2	UNK	NM_001080419	exon16	c.C2308T	p.L770F	AAATGCCTTAAGT	.	37.0	3.0	54.0	0.0	.	87	.	.	Atlas-SNP
TMC8	147138	hgsc.bcm.edu	hg19	17	76134220	76134220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMC8	NM_152468	exon12	c.T1484C	p.L495P	CCCTGCTGCCCCT	.	112.0	5.0	162.0	0.0	.	44	.	.	Atlas-SNP
LRRC45	201255	hgsc.bcm.edu	hg19	17	79986334	79986334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LRRC45	NM_144999	exon11	c.A1187G	p.E396G	GGCAGGAGATGAC	.	85.0	4.0	148.0	0.0	.	22	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2728556	2728556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SMCHD1	NM_015295	exon23	c.A2875G	p.N959D	TCAGACAACATAA	.	81.0	5.0	124.0	0.0	.	88	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7016513	7016513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LAMA1	NM_005559	exon21	c.C2966A	p.A989D	TGGTAGGCGTAGA	.	56.0	10.0	66.0	0.0	.	458	.	.	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	hg19	18	8718551	8718551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_015210	exon3	c.T103C	p.Y35H	CTGCAGTACCGTC	.	81.0	5.0	119.0	0.0	.	.	.	.	Atlas-SNP
IMPACT	55364	hgsc.bcm.edu	hg19	18	22029801	22029801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IMPACT	NM_018439	exon10	c.G778A	p.V260I	AAGAATGTCATGG	.	93.0	11.0	123.0	0.0	.	37	.	.	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	hg19	18	29045290	29045290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DSG3	NM_001944	exon10	c.G1281C	p.M427I	TGTCATGGGACGT	.	179.0	12.0	277.0	0.0	.	172	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31320168	31320168	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	ASXL3_ENST00000269197,caecum,carcinoma,0,2	ASXL3	NM_030632	exon11	c.T2800C	p.L934L	AGTCGGTTAGAAA	.	120.0	6.0	137.0	1.0	.	405	.	.	Atlas-SNP
SETBP1	26040	hgsc.bcm.edu	hg19	18	42281540	42281540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SETBP1	NM_001130110	exon2	c.A229G	p.S77G	GCGGACAGTGAGA	.	108.0	5.0	183.0	0.0	.	577	.	.	Atlas-SNP
PHLPP1	23239	hgsc.bcm.edu	hg19	18	60625874	60625874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	PHLPP1_ENST00000262719,colon,carcinoma,0,3	PHLPP1	NM_194449	exon13	c.A3337G	p.S1113G	GACCTGAGCTGTA	.	61.0	3.0	105.0	0.0	.	164	.	.	Atlas-SNP
SHD	56961	hgsc.bcm.edu	hg19	19	4280256	4280256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	SHD,NS,carcinoma,0,1	SHD	NM_020209	exon1	c.C196T	p.P66S	AAGAACCCCGGAG	.	42.0	2.0	71.0	0.0	.	33	.	.	Atlas-SNP
FEM1A	55527	hgsc.bcm.edu	hg19	19	4792763	4792763	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	FEM1A	NM_018708	exon1	c.A897G	p.E299E	CGTGGAAGCCTTG	.	71.0	4.0	153.0	0.0	.	41	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9048766	9048766	+	Silent	SNP	A	A	G	rs370340214	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC16	NM_024690	exon5	c.T32865C	p.S10955S	ACCAAGAGAAAAA	.	93.0	4.0	158.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9070574	9070574	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	MUC16	NM_024690	exon3	c.T16872C	p.P5624P	TTCCACAGGGGGA	.	99.0	4.0	111.0	0.0	.	4315	.	.	Atlas-SNP
KLF1	10661	hgsc.bcm.edu	hg19	19	12995833	12995833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	KLF1,NS,carcinoma,0,1	KLF1	NM_006563	exon3	c.A955G	p.R319G	CGAATCTCCAGCC	.	30.0	2.0	46.0	1.0	.	15	.	.	Atlas-SNP
ZNF493	284443	hgsc.bcm.edu	hg19	19	21607389	21607389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF493	NM_001076678	exon4	c.A1928G	p.H643R	CCTCACACCTCGC	.	113.0	5.0	154.0	0.0	.	178	.	.	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	hg19	19	33579153	33579153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	GPATCH1	NM_018025	exon2	c.A187G	p.N63D	TACTTCAATACTG	.	100.0	4.0	200.0	0.0	.	79	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36350514	36350514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	KIRREL2	NM_199180	exon5	c.T654C	p.A218A	CACAGCTATCACA	.	40.0	4.0	40.0	0.0	.	170	.	.	Atlas-SNP
ZNF383	163087	hgsc.bcm.edu	hg19	19	37733879	37733879	+	Silent	SNP	C	C	T	rs367688274	alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	ZNF383,NS,NS,0,1	ZNF383	NM_152604	exon5	c.C741T	p.I247I	GAGAATCCATACC	.	66.0	3.0	87.0	1.0	.	42	.	.	Atlas-SNP
CYP2F1	1572	hgsc.bcm.edu	hg19	19	41622142	41622142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CYP2F1	NM_000774	exon2	c.T49C	p.C17R	CTCGTCTGTCTGC	.	76.0	4.0	148.0	0.0	.	60	.	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	hg19	19	42793506	42793506	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CIC	NM_015125	exon8	c.T1308C	p.S436S	GACGAGTGATGAG	.	72.0	4.0	143.0	0.0	.	249	.	.	Atlas-SNP
TMEM145	284339	hgsc.bcm.edu	hg19	19	42818606	42818606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TMEM145	NM_173633	exon3	c.A199G	p.K67E	CAGGCCAAGTGCT	.	61.0	4.0	103.0	0.0	.	55	.	.	Atlas-SNP
TEX101	83639	hgsc.bcm.edu	hg19	19	43920572	43920572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TEX101	NM_031451	exon7	c.G310A	p.E104K	GAAGGGGAGGAGG	.	108.0	17.0	138.0	0.0	.	28	.	.	Atlas-SNP
RASIP1	54922	hgsc.bcm.edu	hg19	19	49238547	49238547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	RASIP1	NM_017805	exon4	c.A1085G	p.D362G	CCGGGGTCTGCAG	.	115.0	6.0	147.0	0.0	.	80	.	.	Atlas-SNP
DHDH	27294	hgsc.bcm.edu	hg19	19	49442937	49442937	+	Missense_Mutation	SNP	G	G	T	rs35453148	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	DHDH,brainstem,primitive_neuroectodermal_tumour-medulloblastoma,0,1	DHDH	NM_014475	exon4	c.G598T	p.V200L	TCTGTCGTGGGAA	.	32.0	4.0	52.0	0.0	.	35	.	G|0.997;A|0.003	Atlas-SNP
ZNF320	162967	hgsc.bcm.edu	hg19	19	53384285	53384285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF320	NM_207333	exon4	c.C1094T	p.A365V	CGGAAAGCCTTGT	.	111.0	5.0	157.0	0.0	.	67	.	.	Atlas-SNP
CACNG7	59284	hgsc.bcm.edu	hg19	19	54418669	54418669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	CACNG7,NS,carcinoma,0,1	CACNG7	NM_031896	exon3	c.T334C	p.F112L	CTCGTGTTCACGG	.	90.0	4.0	185.0	0.0	.	58	.	.	Atlas-SNP
ZNF471	57573	hgsc.bcm.edu	hg19	19	57027722	57027722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ZNF471	NM_020813	exon3	c.T112G	p.L38V	AAGCGTTTATACA	.	163.0	16.0	255.0	0.0	.	99	.	.	Atlas-SNP
EBF4	57593	hgsc.bcm.edu	hg19	20	2736381	2736381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	.	NM_001110514	exon16	c.T1637C	p.V546A	CCGCCGTCAAACA	.	80.0	4.0	129.0	0.0	.	.	.	.	Atlas-SNP
TPX2	22974	hgsc.bcm.edu	hg19	20	30365314	30365314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TPX2	NM_012112	exon9	c.G755T	p.S252I	CAGTGAGCCAGGT	.	81.0	8.0	145.0	0.0	.	61	.	.	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58342290	58342290	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PHACTR3	NM_080672	exon5	c.C591A	p.L197L	CAGCCTCCTGCCC	.	103.0	7.0	145.0	0.0	.	104	.	.	Atlas-SNP
OPRL1	4987	hgsc.bcm.edu	hg19	20	62730031	62730031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	OPRL1,NS,carcinoma,0,1	OPRL1	NM_000913	exon4	c.G992A	p.R331H	GCTTCCGCAAGTT	.	64.0	3.0	110.0	0.0	.	47	.	.	Atlas-SNP
PIWIL3	440822	hgsc.bcm.edu	hg19	22	25153964	25153964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PIWIL3	NM_001008496	exon4	c.C266T	p.P89L	TGCAAGGGCGCTG	.	95.0	20.0	177.0	0.0	.	115	.	.	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	hg19	22	32643496	32643496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SLC5A4	NM_014227	exon5	c.A379G	p.T127A	GCATGGTCATCAC	.	86.0	4.0	149.0	0.0	.	82	.	.	Atlas-SNP
PRKX	5613	hgsc.bcm.edu	hg19	X	3573330	3573330	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PRKX	NM_005044	exon3	c.T459C	p.S153S	CTCTGCAGAGTAG	.	82.0	4.0	119.0	0.0	.	29	.	.	Atlas-SNP
CNKSR2	22866	hgsc.bcm.edu	hg19	X	21458842	21458842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CNKSR2	NM_001168647	exon4	c.A462G	p.S154S	CTATTCAGTTACA	.	55.0	4.0	60.0	0.0	.	158	.	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	hg19	X	35966467	35966467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CXorf22	NM_152632	exon4	c.T554C	p.I185T	TACCCATCCTCAT	.	52.0	5.0	78.0	0.0	.	272	.	.	Atlas-SNP
SUV39H1	6839	hgsc.bcm.edu	hg19	X	48558562	48558562	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	SUV39H1	NM_003173	exon3	c.T246C	p.C82C	CAAGTGTGTGCGT	.	71.0	5.0	83.0	0.0	.	36	.	.	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53114958	53114958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	TSPYL2	NM_022117	exon6	c.T1384C	p.F462L	GACTACTTCGAGA	.	82.0	4.0	94.0	0.0	.	53	.	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	hg19	X	76972657	76972657	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	ATRX	NM_138270	exon2	c.A84G	p.E28E	TTCAGATTCTTCT	.	55.0	7.0	84.0	0.0	.	833	.	.	Atlas-SNP
PCDH19	57526	hgsc.bcm.edu	hg19	X	99657571	99657571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	PCDH19	NM_001184880	exon3	c.A2567G	p.Q856R	GGCCCCTGGCTGT	.	69.0	4.0	139.0	0.0	.	269	.	.	Atlas-SNP
CXorf57	55086	hgsc.bcm.edu	hg19	X	105876229	105876229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	CXorf57	NM_018015	exon5	c.A1156G	p.R386G	GTAGGAAGGGTCC	.	186.0	8.0	238.0	0.0	.	107	.	.	Atlas-SNP
LUZP4	51213	hgsc.bcm.edu	hg19	X	114540807	114540807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	LUZP4	NM_016383	exon4	c.A380G	p.K127R	CAGAGAAGAATCA	.	112.0	5.0	157.0	0.0	.	51	.	.	Atlas-SNP
NKRF	55922	hgsc.bcm.edu	hg19	X	118724383	118724383	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	NKRF	NM_001173487	exon4	c.A1050G	p.K350K	CCAGTGTTTGGCA	.	86.0	4.0	123.0	0.0	.	121	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123200272	123200272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	STAG2	NM_001042749	exon23	c.A2251G	p.S751G	ACTGAAAGCAGCT	.	93.0	5.0	182.0	0.0	.	309	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31604973	31604973	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	DENND5B	NM_144973	exon5	c.1531delA	p.T511fs	.	.	126.0	12.0	212.0	0.0	.	114	.	.	Atlas-INDEL
IL6ST	3572	hgsc.bcm.edu	hg19	5	55260061	55260075	+	In_Frame_Del	DEL	AATACACAGTAGAAT	AATACACAGTAGAAT	-	novel		TCGA-DD-A1ED-01A-11D-A152-10	TCGA-DD-A1ED-10A-01D-A152-10	AATACACAGTAGAAT	AATACACAGTAGAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4c3eda94-56f4-46d3-8c88-50d476e773f6	09455f77-1bc1-4f4b-9b75-dd79fd3237c3	.	IL6ST	NM_002184	exon6	c.558_572del	p.186_191del	.	.	194.0	13.0	315.0	0.0	.	75	.	.	Pindel
