Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FAM213B	127281	hgsc.bcm.edu	hg19	1	2520399	2520399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	C1orf93,caecum,carcinoma,0,1	.	NM_001195736	exon6	c.C643G	p.P215A	AAGTCCCCAGGCG	.	169.0	34.0	46.0	1.0	.	.	.	.	Atlas-SNP
MMEL1	79258	hgsc.bcm.edu	hg19	1	2535696	2535696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MMEL1	NM_033467	exon10	c.A841G	p.M281V	ACACCATGAACTG	.	235.0	28.0	76.0	0.0	.	64	.	.	Atlas-SNP
ACTRT2	140625	hgsc.bcm.edu	hg19	1	2938475	2938475	+	Silent	SNP	C	C	T	rs144521527		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ACTRT2	NM_080431	exon1	c.C225T	p.F75F	CCCTTTCGAGCGT	.	93.0	11.0	48.0	0.0	.	69	.	C|1.000;T|0.000	Atlas-SNP
H6PD	9563	hgsc.bcm.edu	hg19	1	9305494	9305494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	H6PD	NM_004285	exon2	c.G501A	p.W167X	CGCCTGGCTGCGG	.	63.0	11.0	16.0	0.0	.	71	.	.	Atlas-SNP
SRM	6723	hgsc.bcm.edu	hg19	1	11119332	11119332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SRM	NM_003132	exon2	c.C238T	p.Q80X	TCTCCTGGTAGGA	.	178.0	8.0	71.0	0.0	.	18	.	.	Atlas-SNP
DHRS3	9249	hgsc.bcm.edu	hg19	1	12677249	12677249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DHRS3	NM_004753	exon1	c.C105A	p.D35E	CGACAGGTCCCGC	.	120.0	45.0	42.0	0.0	.	18	.	.	Atlas-SNP
TMEM82	388595	hgsc.bcm.edu	hg19	1	16073479	16073479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMEM82	NM_001013641	exon5	c.T875A	p.L292H	GCATCCTTGTCTC	.	187.0	19.0	72.0	0.0	.	30	.	.	Atlas-SNP
SYF2	25949	hgsc.bcm.edu	hg19	1	25558651	25558651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SYF2	NM_207170	exon2	c.G76T	p.A26S	GAGCGGCCAGCTC	.	110.0	21.0	48.0	0.0	.	13	.	.	Atlas-SNP
PHACTR4	65979	hgsc.bcm.edu	hg19	1	28800595	28800595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PHACTR4	NM_023923	exon6	c.C1383G	p.S461R	TGACAGCTTTTCT	.	150.0	11.0	59.0	0.0	.	64	.	.	Atlas-SNP
EVA1B	55194	hgsc.bcm.edu	hg19	1	36788575	36788575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_018166	exon2	c.C64G	p.R22G	CACCGCGGATGTG	.	244.0	21.0	94.0	0.0	.	.	.	.	Atlas-SNP
SF3A3	10946	hgsc.bcm.edu	hg19	1	38453345	38453345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SF3A3	NM_006802	exon4	c.G203A	p.R68Q	TCCTTTCGTAATC	.	162.0	11.0	80.0	0.0	.	37	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52254983	52254983	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NRD1	NM_002525	exon33	c.T3585C	p.C1195C	GATGATACAATCT	.	143.0	48.0	77.0	0.0	.	89	.	.	Atlas-SNP
PDE4B	5142	hgsc.bcm.edu	hg19	1	66723358	66723358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PDE4B	NM_001037341	exon5	c.T505G	p.F169V	ACTCCTTTTGCCC	.	261.0	23.0	117.0	0.0	.	231	.	.	Atlas-SNP
FPGT	8790	hgsc.bcm.edu	hg19	1	74671212	74671212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FPGT	NM_003838	exon4	c.G1481T	p.G494V	TCTTTGGAGTCTG	.	181.0	10.0	79.0	0.0	.	77	.	.	Atlas-SNP
STXBP3	6814	hgsc.bcm.edu	hg19	1	109339272	109339272	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STXBP3	NM_007269	exon15	c.T1280A	p.I427N	GGTTGATCCAGAA	.	203.0	9.0	76.0	0.0	.	44	.	.	Atlas-SNP
ATP1A1	476	hgsc.bcm.edu	hg19	1	116933025	116933025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATP1A1	NM_001160233	exon9	c.A1214C	p.N405T	CAGAGAATCAGAG	.	229.0	25.0	70.0	0.0	.	87	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367800	145367800	+	Missense_Mutation	SNP	G	G	A	rs201525063	bycluster	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	NBPF10,rectum,carcinoma,0,2	NBPF10	NM_001039703	exon83	c.G10396A	p.D3466N	GAAGAAGATCAAA	.	3.0	2.0	1.0	0.0	.	221	.	.	Atlas-SNP
HIST2H2AC	8338	hgsc.bcm.edu	hg19	1	149858545	149858545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HIST2H2AC	NM_003517	exon1	c.A21T	p.Q7H	CAAACAAGGAGGC	.	191.0	49.0	53.0	0.0	.	75	.	.	Atlas-SNP
CGN	57530	hgsc.bcm.edu	hg19	1	151499552	151499552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CGN	NM_020770	exon10	c.G1865T	p.G622V	GTGCTGGAGATAC	.	315.0	29.0	68.0	0.0	.	106	.	.	Atlas-SNP
C1orf68	100129271	hgsc.bcm.edu	hg19	1	152692324	152692324	+	Silent	SNP	C	C	T	rs201318627		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C1orf68	NM_001024679	exon1	c.C327T	p.Y109Y	AACCTACGTGAAG	.	399.0	46.0	94.0	0.0	.	19	.	C|0.999;T|0.001	Atlas-SNP
PGLYRP4	57115	hgsc.bcm.edu	hg19	1	153314164	153314164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PGLYRP4	NM_020393	exon6	c.G564T	p.Q188H	AAGTGGCTGAACA	.	180.0	21.0	44.0	0.0	.	45	.	.	Atlas-SNP
ZBTB7B	51043	hgsc.bcm.edu	hg19	1	154988092	154988092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZBTB7B	NM_001252406	exon4	c.G1058A	p.S353N	ACCTAAGCTCCCT	.	267.0	14.0	38.0	0.0	.	69	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156939122	156939122	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARHGEF11	NM_198236	exon10	c.G777T	p.G259G	ACTGTCCCCCTCC	.	138.0	69.0	30.0	0.0	.	168	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158605719	158605719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPTA1	NM_003126	exon38	c.G5416C	p.E1806Q	CCAACTCTTTGAG	.	214.0	9.0	49.0	0.0	.	720	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158651408	158651408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPTA1	NM_003126	exon4	c.C440T	p.T147I	TCCAGGGTCAGCT	.	344.0	138.0	80.0	0.0	.	720	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167086745	167086745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	DUSP27,NS,carcinoma,0,1	DUSP27	NM_001080426	exon3	c.C386T	p.A129V	AAGAGGCGCCCTG	.	226.0	34.0	53.0	0.0	.	235	.	.	Atlas-SNP
RFWD2	64326	hgsc.bcm.edu	hg19	1	175956209	175956209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RFWD2	NM_022457	exon18	c.A2003G	p.Y668C	CCTTTATAGTACA	.	300.0	15.0	56.0	0.0	.	67	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179561759	179561759	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TDRD5	NM_173533	exon2	c.A9G	p.E3E	GTCTGAACAAGAG	.	102.0	41.0	29.0	0.0	.	149	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179603595	179603595	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TDRD5	NM_173533	exon8	c.A1130T	p.Q377L	TAGTTCAGTCAGA	.	324.0	16.0	74.0	0.0	.	149	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181548355	181548355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CACNA1E	NM_001205293	exon5	c.A764T	p.N255I	TGAACAATTCAGG	.	400.0	16.0	127.0	0.0	.	778	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182823304	182823304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DHX9	NM_001357	exon6	c.A617G	p.D206G	GTCCTGATCACAA	.	367.0	16.0	83.0	0.0	.	114	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182852382	182852382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DHX9	NM_001357	exon25	c.A3023T	p.E1008V	ATAAGGAAAAGAG	.	348.0	17.0	103.0	0.0	.	114	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186007150	186007150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HMCN1	NM_031935	exon37	c.C5834A	p.A1945D	AGGCAGCTGGAAA	.	244.0	99.0	76.0	0.0	.	797	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200946358	200946358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	KIF21B,NS,carcinoma,0,1	KIF21B	NM_001252102	exon31	c.G4307T	p.R1436L	CAGATGCGGACGG	.	137.0	10.0	30.0	0.0	.	208	.	.	Atlas-SNP
DYRK3	8444	hgsc.bcm.edu	hg19	1	206820946	206820946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DYRK3	NM_003582	exon3	c.G403T	p.A135S	TCCAAGGCACCCA	.	432.0	35.0	79.0	0.0	.	146	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209789918	209789918	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LAMB3	NM_000228	exon22	c.C3280T	p.Q1094X	AACTCTGACCCAA	.	357.0	20.0	89.0	0.0	.	136	.	.	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	hg19	1	222705320	222705320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HHIPL2	NM_024746	exon6	c.G1711C	p.E571Q	CATCTTCAGCAAA	.	225.0	19.0	40.0	0.0	.	122	.	.	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	hg19	1	223568584	223568584	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C1orf65	NM_152610	exon1	c.C1767T	p.L589L	GAAGCTCCCTCAG	.	207.0	61.0	50.0	0.0	.	71	.	.	Atlas-SNP
WDR26	80232	hgsc.bcm.edu	hg19	1	224619473	224619473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WDR26	NM_001115113	exon2	c.G433T	p.D145Y	GGAGATCAACAGT	.	218.0	9.0	63.0	0.0	.	104	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225332286	225332286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH14	NM_001373	exon28	c.C4645A	p.P1549T	GCCGGTCCAGCTG	.	121.0	10.0	39.0	0.0	.	300	.	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	hg19	1	227216748	227216748	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDC42BPA	NM_003607	exon29	c.G3937C	p.A1313P	TGAGAGCTCCATG	.	103.0	10.0	18.0	0.0	.	528	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228474524	228474524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OBSCN	NM_001271223	exon40	c.G10615T	p.G3539C	ACAGAGGGTGAGG	.	249.0	29.0	41.0	0.0	.	2142	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228474710	228474710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OBSCN	NM_001271223	exon40	c.G10801T	p.A3601S	GGGGGCGCCTGCA	.	191.0	26.0	20.0	0.0	.	2142	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228495849	228495849	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OBSCN	NM_001271223	exon58	c.G15375T	p.A5125A	TGATGCGGAGGTG	.	261.0	113.0	75.0	0.0	.	2142	.	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232650005	232650005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SIPA1L2	NM_020808	exon1	c.G1081T	p.A361S	CAGATGCCCCAGT	.	140.0	6.0	40.0	0.0	.	218	.	.	Atlas-SNP
RBM34	23029	hgsc.bcm.edu	hg19	1	235318339	235318339	+	Missense_Mutation	SNP	C	C	A	rs200657743	bycluster;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RBM34	NM_001161533	exon4	c.G454T	p.V152L	CTGCTACTTTAAC	.	751.0	57.0	155.0	0.0	.	41	.	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	hg19	1	238048491	238048491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ZP4,NS,carcinoma,0,1	ZP4	NM_021186	exon9	c.G1285T	p.V429L	TCTCCACTGTAGG	.	291.0	74.0	83.0	0.0	.	161	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	hg19	1	240071656	240071656	+	Missense_Mutation	SNP	G	G	T	rs202097685	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CHRM3	NM_000740	exon5	c.G905T	p.R302L	TGAAACGCTCCAA	.	195.0	31.0	35.0	0.0	.	118	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1497607	1497607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TPO	NM_001206744	exon11	c.C1802A	p.P601H	GCCTGCCTCGCCT	.	103.0	12.0	32.0	0.0	.	224	.	.	Atlas-SNP
KCNF1	3754	hgsc.bcm.edu	hg19	2	11053359	11053359	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	KCNF1,right_lower_lobe,carcinoma,0,1	KCNF1	NM_002236	exon1	c.C807T	p.S269S	CGTGAGCCTCACG	.	71.0	5.0	51.0	0.0	.	70	.	.	Atlas-SNP
KCNF1	3754	hgsc.bcm.edu	hg19	2	11053487	11053487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCNF1	NM_002236	exon1	c.C935T	p.T312I	TGCAGACCCTCAC	.	160.0	8.0	36.0	0.0	.	70	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21231053	21231053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	APOB	NM_000384	exon26	c.C8687T	p.P2896L	AGTTTGGGGATGT	.	230.0	12.0	117.0	0.0	.	761	.	.	Atlas-SNP
UBXN2A	165324	hgsc.bcm.edu	hg19	2	24194229	24194229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	UBXN2A	NM_181713	exon3	c.A125T	p.E42V	TTTTTGAGGAAGC	.	113.0	13.0	70.0	0.0	.	20	.	.	Atlas-SNP
TRIM54	57159	hgsc.bcm.edu	hg19	2	27528584	27528584	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRIM54	NM_032546	exon6	c.G868C	p.G290R	GTCCGCGGCCTCA	.	165.0	33.0	36.0	0.0	.	35	.	.	Atlas-SNP
TRMT61B	55006	hgsc.bcm.edu	hg19	2	29075273	29075273	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRMT61B	NM_017910	exon5	c.1085+1G>A	.	TACTCACTTTACT	.	158.0	12.0	85.0	0.0	.	28	.	.	Atlas-SNP
GALNT14	79623	hgsc.bcm.edu	hg19	2	31165150	31165150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GALNT14	NM_001253826	exon10	c.G863T	p.G288V	AAGAGCCCTCCAG	.	45.0	17.0	39.0	0.0	.	103	.	.	Atlas-SNP
GALNT14	79623	hgsc.bcm.edu	hg19	2	31165151	31165151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GALNT14	NM_001253826	exon10	c.G862T	p.G288W	AGAGCCCTCCAGC	.	44.0	16.0	38.0	0.0	.	103	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31591490	31591490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	XDH	NM_000379	exon19	c.G2017T	p.A673S	TGTCAGCAACCAC	.	135.0	6.0	90.0	0.0	.	191	.	.	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	hg19	2	38976737	38976737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SRSF7	NM_001195446	exon3	c.A320G	p.Y107C	CACTCATAGCATC	.	299.0	17.0	101.0	0.0	.	29	.	.	Atlas-SNP
ABCG5	64240	hgsc.bcm.edu	hg19	2	44053584	44053584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ABCG5	NM_022436	exon6	c.A711C	p.E237D	AGCCAGTTCCACC	.	146.0	10.0	58.0	0.0	.	72	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54855371	54855371	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPTBN1	NM_003128	exon13	c.C1782G	p.F594L	GAAGTTCGCAACA	.	63.0	6.0	39.0	0.0	.	378	.	.	Atlas-SNP
MDH1	4190	hgsc.bcm.edu	hg19	2	63824634	63824634	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MDH1	NM_001199111	exon4	c.T355A	p.L119I	AAAGATTTACTGA	.	266.0	106.0	119.0	0.0	.	29	.	.	Atlas-SNP
C2orf42	54980	hgsc.bcm.edu	hg19	2	70408657	70408657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C2orf42	NM_017880	exon3	c.C461T	p.S154L	AGGACCGAGCTCT	.	49.0	27.0	19.0	0.0	.	30	.	.	Atlas-SNP
CLEC4F	165530	hgsc.bcm.edu	hg19	2	71047619	71047619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CLEC4F	NM_173535	exon1	c.C37A	p.Q13K	CACACTGGTTATC	.	141.0	20.0	56.0	0.0	.	95	.	.	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86259502	86259502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	POLR1A	NM_015425	exon29	c.G4165T	p.E1389X	CCTGCTCTCCCTG	.	118.0	32.0	94.0	0.0	.	137	.	.	Atlas-SNP
CNOT11	55571	hgsc.bcm.edu	hg19	2	101885756	101885756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_017546	exon7	c.A1414T	p.I472L	TTGTTTATAGAAG	.	223.0	21.0	103.0	0.0	.	.	.	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105924415	105924415	+	Missense_Mutation	SNP	C	C	A	rs369840873	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGFBRAP1	NM_004257	exon2	c.G344T	p.R115L	TTGATGCGGGCCC	.	128.0	16.0	17.0	0.0	.	70	.	.	Atlas-SNP
SLC5A7	60482	hgsc.bcm.edu	hg19	2	108622601	108622601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC5A7	NM_021815	exon7	c.G838A	p.G280R	GCTTTCGGGTGCC	.	149.0	23.0	37.0	0.0	.	109	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109381074	109381074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RANBP2	NM_006267	exon20	c.G4079A	p.S1360N	GTAACAGCTGCTC	.	217.0	22.0	60.0	0.0	.	488	.	.	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128474768	128474768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	WDR33,scalp,malignant_melanoma,0,1	WDR33	NM_018383	exon17	c.C2830A	p.P944T	GAGGGGGAATGCG	.	181.0	23.0	77.0	0.0	.	136	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133547663	133547663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NCKAP5	NM_207481	exon13	c.G1025T	p.S342I	CAGGTGCTTGAAA	.	185.0	16.0	60.0	0.0	.	322	.	.	Atlas-SNP
CACNB4	785	hgsc.bcm.edu	hg19	2	152732958	152732958	+	Missense_Mutation	SNP	C	C	G	rs376364352		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CACNB4	NM_001145798	exon5	c.G503C	p.R168T	CGTCCTCTTTTTT	.	149.0	15.0	84.0	0.0	.	108	.	.	Atlas-SNP
PRPF40A	55660	hgsc.bcm.edu	hg19	2	153573934	153573934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PRPF40A	NM_017892	exon1	c.G20T	p.R7L	CGCCGGCGGCCAC	.	189.0	31.0	25.0	0.0	.	149	.	.	Atlas-SNP
NR4A2	4929	hgsc.bcm.edu	hg19	2	157186659	157186659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NR4A2	NM_006186	exon3	c.G40A	p.G14R	TGGCTCCTTGAGG	.	155.0	17.0	61.0	0.0	.	82	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160737645	160737645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LY75	NM_002349	exon8	c.G1353T	p.E451D	ATTTGGCTCATTC	.	258.0	18.0	87.0	0.0	.	151	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160737646	160737646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LY75	NM_002349	exon8	c.A1352T	p.E451V	TTTGGCTCATTCT	.	259.0	18.0	87.0	0.0	.	151	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160833216	160833216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLA2R1	NM_001195641	exon16	c.T2417C	p.I806T	AACGGAATCTTGG	.	291.0	21.0	96.0	0.0	.	153	.	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166211045	166211045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SCN2A	NM_001040143	exon16	c.A3263G	p.D1088G	TCGTGGATGAAAG	.	267.0	15.0	102.0	0.0	.	589	.	.	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	hg19	2	166514403	166514403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CSRNP3	NM_001172173	exon5	c.T281A	p.M94K	TGGGGATGTCCAG	.	133.0	46.0	40.0	0.0	.	73	.	.	Atlas-SNP
BBS5	129880	hgsc.bcm.edu	hg19	2	170344622	170344622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	BBS5	NM_152384	exon5	c.C384A	p.H128Q	AGTACACAGGTAT	.	237.0	79.0	117.0	0.0	.	27	.	.	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170806152	170806152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	UBR3	NM_172070	exon23	c.A3122G	p.E1041G	TAGCAGAACGTAG	.	101.0	5.0	48.0	0.0	.	182	.	.	Atlas-SNP
CHRNA1	1134	hgsc.bcm.edu	hg19	2	175624066	175624066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CHRNA1	NM_001039523	exon3	c.T227A	p.L76Q	TGTTTCAGACGCA	.	198.0	13.0	65.0	0.0	.	92	.	.	Atlas-SNP
HOXD4	3233	hgsc.bcm.edu	hg19	2	177017653	177017653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HOXD4	NM_014621	exon2	c.G751C	p.D251H	CACACGGACCTGA	.	170.0	18.0	43.0	0.0	.	32	.	.	Atlas-SNP
HIBCH	26275	hgsc.bcm.edu	hg19	2	191155206	191155206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HIBCH	NM_014362	exon5	c.T310G	p.S104A	CTTCCGAGATCAC	.	122.0	17.0	64.0	0.0	.	28	.	.	Atlas-SNP
MYO1B	4430	hgsc.bcm.edu	hg19	2	192160953	192160953	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MYO1B	NM_012223	exon3	c.251+1G>T	.	TCACATGTAAGTA	.	146.0	61.0	58.0	0.0	.	160	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196593015	196593015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC39A10	NM_020342	exon9	c.C2279A	p.T760K	ACATCACACTTTG	.	387.0	53.0	150.0	0.0	.	89	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196825086	196825086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH7	NM_018897	exon18	c.T2789C	p.L930S	GATGCCAAAATAA	.	86.0	10.0	53.0	0.0	.	512	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198267360	198267360	+	Missense_Mutation	SNP	T	T	G	rs374250186	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	SF3B1,NS,malignant_melanoma,0,27	SF3B1	NM_012433	exon14	c.A1997C	p.K666T	ACAATCTTAATAC	.	242.0	20.0	99.0	0.0	.	1038	.	.	Atlas-SNP
DYTN	391475	hgsc.bcm.edu	hg19	2	207530732	207530732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DYTN	NM_001093730	exon10	c.C1002A	p.N334K	GTATTGGTTTAAC	.	220.0	21.0	114.0	0.0	.	168	.	.	Atlas-SNP
IDH1	3417	hgsc.bcm.edu	hg19	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	267.0	17.0	91.0	0.0	.	6310	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212615384	212615384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ERBB4,NS,carcinoma,0,1	ERBB4	NM_001042599	exon5	c.C602A	p.T201K	TTTTCTGTGGGTC	.	124.0	15.0	54.0	0.0	.	480	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215823013	215823013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ABCA12	NM_173076	exon41	c.C6105A	p.F2035L	ATAAATGAAGTTT	.	139.0	16.0	71.0	0.0	.	368	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215843664	215843664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ABCA12	NM_173076	exon32	c.G4841A	p.G1614E	AGCTCTCCCCCAA	.	320.0	21.0	106.0	0.0	.	368	.	.	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	hg19	2	225266346	225266346	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	FAM124B_ENST00000409685,NS,carcinoma,0,2	FAM124B	NM_024785	exon1	c.G140C	p.R47P	CTGGCCCGTTCAG	.	118.0	27.0	36.0	0.0	.	71	.	.	Atlas-SNP
SLC19A3	80704	hgsc.bcm.edu	hg19	2	228560620	228560620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC19A3	NM_025243	exon4	c.T1157C	p.L386P	GTTATAAGAAGCA	.	87.0	36.0	55.0	0.0	.	62	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234394446	234394446	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	USP40	NM_018218	exon28	c.C3408T	p.P1136P	CTTTTCGGGAAAG	.	266.0	107.0	113.0	0.0	.	174	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238249117	238249117	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL6A3	NM_004369	exon38	c.G8442A	p.R2814R	CAACAGCCTCCCG	.	46.0	20.0	19.0	0.0	.	608	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1371531	1371531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	CNTN6,colon,carcinoma,0,1	CNTN6	NM_014461	exon11	c.G1276A	p.D426N	GGTGGGGATATTG	.	436.0	26.0	142.0	1.0	.	245	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1371532	1371532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CNTN6	NM_014461	exon11	c.A1277T	p.D426V	GTGGGGATATTGT	.	442.0	26.0	143.0	0.0	.	245	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4732940	4732940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ITPR1	NM_001099952	exon32	c.G3914A	p.R1305Q	ACGGTCGGAATGT	.	319.0	23.0	97.0	0.0	.	659	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	hg19	3	9776191	9776191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	BRPF1	NM_001003694	exon2	c.G367A	p.E123K	GAGGATGAGGAAG	.	154.0	20.0	65.0	0.0	.	104	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10401567	10401567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATP2B2	NM_001001331	exon13	c.A1900G	p.K634E	CTTACTTCTTGAG	.	80.0	5.0	40.0	0.0	.	304	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10443888	10443888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATP2B2	NM_001683	exon4	c.G542T	p.G181V	TGCAGGCCCCGGA	.	99.0	14.0	34.0	0.0	.	304	.	.	Atlas-SNP
RFTN1	23180	hgsc.bcm.edu	hg19	3	16368288	16368288	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RFTN1	NM_015150	exon8	c.G1242A	p.K414K	GGTAGTCTTGACG	.	61.0	4.0	28.0	0.0	.	79	.	.	Atlas-SNP
TRIM71	131405	hgsc.bcm.edu	hg19	3	32915309	32915309	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRIM71	NM_001039111	exon2	c.853-1G>A	.	TCCCCAGGTGCTG	.	214.0	13.0	103.0	0.0	.	73	.	.	Atlas-SNP
GLB1	2720	hgsc.bcm.edu	hg19	3	33106973	33106973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GLB1	NM_001135602	exon3	c.G322A	p.A108T	AACTGGCCCTCCA	.	339.0	42.0	122.0	0.0	.	51	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38135225	38135225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DLEC1	NM_007337	exon12	c.C1886T	p.T629M	GGTCCACGGCTAG	.	184.0	18.0	70.0	0.0	.	278	.	.	Atlas-SNP
TTC21A	199223	hgsc.bcm.edu	hg19	3	39171742	39171742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TTC21A	NM_145755	exon17	c.G2233T	p.E745X	CAGCCCGAGAAGG	.	128.0	25.0	49.0	0.0	.	96	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	CTNNB1,colon,carcinoma,-1,11	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	138.0	10.0	68.0	0.0	.	4904	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41275047	41275047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CTNNB1	NM_001098209	exon9	c.C1213T	p.L405F	GGGACTCTTGTTC	.	110.0	6.0	51.0	0.0	.	4904	.	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	hg19	3	45153871	45153871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDCP1	NM_178181	exon3	c.C359G	p.T120S	TTGAGGGTAGGCA	.	121.0	57.0	64.0	0.0	.	61	.	.	Atlas-SNP
TRAIP	10293	hgsc.bcm.edu	hg19	3	49867199	49867199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRAIP	NM_005879	exon13	c.G1087A	p.E363K	GGGACTCCTGCAG	.	95.0	9.0	31.0	0.0	.	47	.	.	Atlas-SNP
NAT6	24142	hgsc.bcm.edu	hg19	3	50334446	50334446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NAT6	NM_012191	exon2	c.G515T	p.R172L	AAGCCACGGCCCC	.	30.0	10.0	9.0	0.0	.	14	.	.	Atlas-SNP
TMEM115	11070	hgsc.bcm.edu	hg19	3	50395815	50395815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMEM115	NM_007024	exon1	c.T680A	p.F227Y	GGGAAGAAAGTGG	.	121.0	9.0	55.0	0.0	.	20	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52549455	52549455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STAB1	NM_015136	exon37	c.G3881T	p.S1294I	GGAAGAGCTGTGT	.	106.0	16.0	39.0	0.0	.	178	.	.	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52588770	52588770	+	Missense_Mutation	SNP	C	C	A	rs143564112	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	PBRM1_ENST00000356770,NS,lymphoid_neoplasm,0,1	PBRM1	NM_018313	exon27	c.G4258T	p.V1420L	CAGGCACACCTGG	.	250.0	12.0	82.0	0.0	.	1252	.	C|0.999;T|0.001	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52662939	52662939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PBRM1	NM_018313	exon13	c.C1414T	p.R472X	GAACTCGCTTGTA	.	138.0	8.0	75.0	0.0	.	1252	.	.	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	hg19	3	61975392	61975392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PTPRG	NM_002841	exon3	c.T284C	p.V95A	CGCGTGTTGGGGA	.	124.0	18.0	81.0	0.0	.	153	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77614146	77614146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ROBO2	NM_002942	exon12	c.T1724C	p.V575A	ACCATGTAAAGAC	.	68.0	18.0	33.0	0.0	.	527	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77629195	77629195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ROBO2	NM_002942	exon16	c.A2426C	p.Q809P	GTATTCAATACCG	.	191.0	37.0	78.0	0.0	.	527	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77651546	77651546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ROBO2_ENST00000487694,NS,carcinoma,0,6	ROBO2	NM_002942	exon20	c.G3040A	p.D1014N	GCTGTCGATCTGC	.	269.0	12.0	87.0	0.0	.	527	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	85984981	85984981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CADM2	NM_001167675	exon7	c.G765T	p.L255F	AATTTTGACTTGT	.	393.0	34.0	126.0	0.0	.	195	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	86114753	86114753	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CADM2	NM_001167674	exon9	c.1064-2A>G	.	TTTTCCAGATCCT	.	210.0	13.0	86.0	0.0	.	195	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97202883	97202883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EPHA6	NM_001080448	exon10	c.T2180C	p.I727T	TTCGTATTGAGAG	.	177.0	11.0	76.0	0.0	.	439	.	.	Atlas-SNP
TRMT10C	54931	hgsc.bcm.edu	hg19	3	101283884	101283884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_017819	exon2	c.G259A	p.D87N	AGTAAGGATGAAG	.	153.0	15.0	58.0	0.0	.	.	.	.	Atlas-SNP
IFT57	55081	hgsc.bcm.edu	hg19	3	107937444	107937444	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IFT57	NM_018010	exon3	c.A432G	p.V144V	ATAGCATACATGT	.	226.0	99.0	104.0	0.0	.	44	.	.	Atlas-SNP
TMPRSS7	344805	hgsc.bcm.edu	hg19	3	111797619	111797619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMPRSS7	NM_001042575	exon15	c.C1877T	p.A626V	AGCAAGCGGAGGT	.	233.0	14.0	74.0	0.0	.	126	.	.	Atlas-SNP
ADPRH	141	hgsc.bcm.edu	hg19	3	119305482	119305482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ADPRH,right_upper_lobe,carcinoma,0,1	ADPRH	NM_001125	exon4	c.C649T	p.L217F	GAAAATCTTCAAC	.	42.0	2.0	19.0	0.0	.	33	.	.	Atlas-SNP
GTF2E1	2960	hgsc.bcm.edu	hg19	3	120469757	120469757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GTF2E1	NM_005513	exon2	c.G358A	p.D120N	GAGAGAGATTCGA	.	175.0	14.0	64.0	0.0	.	52	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122629075	122629075	+	Missense_Mutation	SNP	G	G	A	rs369693926		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SEMA5B	NM_001256347	exon23	c.C3533T	p.T1178M	GTAGTCGTGTACA	.	529.0	27.0	145.0	0.0	.	303	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124165646	124165646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KALRN	NM_003947	exon21	c.C3460G	p.L1154V	TTTTACCTCTCAA	.	116.0	12.0	51.0	0.0	.	556	.	.	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129275500	129275500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLXND1	NM_015103	exon35	c.T5621C	p.M1874T	TCTGCCATGGCCA	.	291.0	27.0	83.0	0.0	.	149	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130286897	130286897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL6A6	NM_001102608	exon5	c.A1850G	p.K617R	CTTGCAAAGAGAT	.	149.0	11.0	52.0	0.0	.	497	.	.	Atlas-SNP
KY	339855	hgsc.bcm.edu	hg19	3	134348537	134348537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KY	NM_178554	exon4	c.G263T	p.G88V	TGTGTCCCTACAA	.	162.0	12.0	63.0	0.0	.	92	.	.	Atlas-SNP
CEP70	80321	hgsc.bcm.edu	hg19	3	138219253	138219253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CEP70	NM_024491	exon15	c.C1525T	p.L509F	CTAAGAGTTCTTG	.	366.0	28.0	116.0	0.0	.	51	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140281020	140281020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CLSTN2	NM_022131	exon13	c.A2082T	p.L694F	TAACTTAGATTTC	.	144.0	16.0	47.0	0.0	.	190	.	.	Atlas-SNP
TFDP2	7029	hgsc.bcm.edu	hg19	3	141678612	141678612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TFDP2	NM_001178139	exon11	c.G955T	p.G319X	ACATTCCCATCCG	.	157.0	14.0	61.0	0.0	.	44	.	.	Atlas-SNP
TFDP2	7029	hgsc.bcm.edu	hg19	3	141678613	141678613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TFDP2	NM_001178139	exon11	c.G954T	p.M318I	CATTCCCATCCGC	.	159.0	15.0	61.0	0.0	.	44	.	.	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	hg19	3	148559613	148559613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CPB1	NM_001871	exon6	c.G478A	p.G160S	TAGGTTGGCAAAG	.	224.0	21.0	98.0	0.0	.	74	.	.	Atlas-SNP
SUCNR1	56670	hgsc.bcm.edu	hg19	3	151598552	151598552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SUCNR1	NM_033050	exon3	c.G221T	p.C74F	TTCTGTGCACCCT	.	305.0	34.0	103.0	0.0	.	31	.	.	Atlas-SNP
GMPS	8833	hgsc.bcm.edu	hg19	3	155643090	155643090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GMPS	NM_003875	exon12	c.A1495T	p.M499L	AAGCTGATGCAAA	.	624.0	73.0	159.0	0.0	.	70	.	.	Atlas-SNP
SHOX2	6474	hgsc.bcm.edu	hg19	3	157820591	157820591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SHOX2	NM_003030	exon3	c.G503A	p.R168Q	TTGGTCCGACTTC	.	218.0	11.0	123.0	0.0	.	84	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164750329	164750329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SI	NM_001041	exon24	c.C2717T	p.T906I	TCATAAGTGAAAT	.	115.0	7.0	60.0	0.0	.	500	.	.	Atlas-SNP
WDR49	151790	hgsc.bcm.edu	hg19	3	167250760	167250760	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WDR49	NM_178824	exon8	c.T904G	p.Y302D	CATCATAACTCCC	.	125.0	41.0	56.0	0.0	.	188	.	.	Atlas-SNP
WDR49	151790	hgsc.bcm.edu	hg19	3	167293931	167293931	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WDR49	NM_178824	exon4	c.A261T	p.R87S	CCAGAGTCTCAAA	.	115.0	54.0	54.0	0.0	.	188	.	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	hg19	3	173322666	173322666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	NLGN1,caecum,adenoma,0,3	NLGN1	NM_014932	exon3	c.G278T	p.R93L	GGGAACGTCGTTT	.	149.0	20.0	86.0	0.0	.	209	.	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	hg19	3	173525610	173525610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NLGN1	NM_014932	exon4	c.C634A	p.L212I	TATCGACTTGGAG	.	194.0	17.0	74.0	0.0	.	209	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178916692	178916692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PIK3CA	NM_006218	exon2	c.C79A	p.P27T	TTACTACCAAATG	.	143.0	14.0	42.0	0.0	.	8460	.	.	Atlas-SNP
EIF4A2	1974	hgsc.bcm.edu	hg19	3	186504304	186504304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	EIF4A2,NS,carcinoma,0,1	EIF4A2	NM_001967	exon7	c.C641T	p.S214F	TGCTTTCTGCCAC	.	363.0	27.0	139.0	0.0	.	55	.	.	Atlas-SNP
MB21D2	151963	hgsc.bcm.edu	hg19	3	192516472	192516472	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MB21D2	NM_178496	exon2	c.C1179A	p.V393V	AAGCATGACTGTC	.	42.0	20.0	23.0	0.0	.	75	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195511217	195511217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MUC4	NM_018406	exon2	c.G7234A	p.G2412S	CGTGACCTGTGGA	.	123.0	5.0	47.0	0.0	.	1505	.	.	Atlas-SNP
ZDHHC19	131540	hgsc.bcm.edu	hg19	3	195935366	195935366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZDHHC19	NM_001039617	exon4	c.G474A	p.M158I	AAGCAGCATGAAG	.	241.0	30.0	78.0	0.0	.	25	.	.	Atlas-SNP
WHSC1	7468	hgsc.bcm.edu	hg19	4	1957858	1957858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WHSC1	NM_133335	exon15	c.G2824T	p.G942W	ATGGAGGGGGACC	.	180.0	14.0	42.0	0.0	.	180	.	.	Atlas-SNP
FAM193A	8603	hgsc.bcm.edu	hg19	4	2717767	2717767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FAM193A	NM_001256666	exon19	c.A3640G	p.K1214E	CTACCTAAAGATA	.	187.0	74.0	147.0	0.0	.	103	.	.	Atlas-SNP
HS3ST1	9957	hgsc.bcm.edu	hg19	4	11400952	11400952	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HS3ST1	NM_005114	exon2	c.T678A	p.P226P	GATCTCAGGGAAG	.	66.0	34.0	19.0	0.0	.	41	.	.	Atlas-SNP
CD38	952	hgsc.bcm.edu	hg19	4	15839760	15839760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CD38	NM_001775	exon5	c.T631C	p.S211P	AATGGATCCCGCA	.	86.0	11.0	53.0	0.0	.	36	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30724910	30724910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PCDH7	NM_032457	exon1	c.C1866A	p.S622R	GGGCAGCACTACG	.	100.0	18.0	32.0	0.0	.	215	.	.	Atlas-SNP
KIAA1239	57495	hgsc.bcm.edu	hg19	4	37447730	37447730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KIAA1239	NM_001144990	exon7	c.A4120G	p.T1374A	ATGGTGACATCAG	.	107.0	17.0	38.0	0.0	.	79	.	.	Atlas-SNP
KIAA1239	57495	hgsc.bcm.edu	hg19	4	37447823	37447823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KIAA1239	NM_001144990	exon7	c.A4213C	p.I1405L	CTGCTGATTACAC	.	91.0	14.0	21.0	0.0	.	79	.	.	Atlas-SNP
RFC1	5981	hgsc.bcm.edu	hg19	4	39310299	39310299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RFC1	NM_002913	exon13	c.G1842T	p.W614C	TCGGAGCCAGCGT	.	352.0	33.0	139.0	0.0	.	114	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46053503	46053503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GABRG1	NM_173536	exon8	c.T1069A	p.F357I	TGGTAAAATAATG	.	80.0	31.0	79.0	0.0	.	172	.	.	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	hg19	4	46390684	46390684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GABRA2	NM_000807	exon2	c.C40A	p.L14I	CAAAAAGCAGGAA	.	490.0	38.0	142.0	0.0	.	134	.	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	hg19	4	46930408	46930408	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GABRA4	NM_000809	exon9	c.C1499A	p.S500X	GTAGCTGACAACT	.	230.0	18.0	101.0	0.0	.	129	.	.	Atlas-SNP
EXOC1	55763	hgsc.bcm.edu	hg19	4	56750089	56750089	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EXOC1	NM_018261	exon10	c.A1325C	p.K442T	GCAAGAAGTTTGG	.	430.0	44.0	146.0	0.0	.	103	.	.	Atlas-SNP
CEP135	9662	hgsc.bcm.edu	hg19	4	56846403	56846403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CEP135	NM_025009	exon12	c.A1568T	p.Q523L	ATATACAGTCCAA	.	401.0	24.0	129.0	0.0	.	115	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62849309	62849309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LPHN3	NM_015236	exon16	c.G3020T	p.G1007V	GTTATGGAACAGA	.	254.0	22.0	80.0	0.0	.	800	.	.	Atlas-SNP
TECRL	253017	hgsc.bcm.edu	hg19	4	65240898	65240898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TECRL	NM_001010874	exon2	c.A278G	p.H93R	GCTTTGTGAAACT	.	209.0	68.0	103.0	0.0	.	106	.	.	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	hg19	4	66218783	66218783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EPHA5	NM_004439	exon13	c.G2275A	p.G759S	AAGAGCCATTCTC	.	211.0	98.0	95.0	0.0	.	315	.	.	Atlas-SNP
UGT2A1	10941	hgsc.bcm.edu	hg19	4	70455333	70455333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	UGT2A1	NM_001252274	exon7	c.C1839A	p.H613Q	ATCATGGTGAATT	.	311.0	30.0	106.0	0.0	.	131	.	.	Atlas-SNP
C4orf40	401137	hgsc.bcm.edu	hg19	4	71024516	71024516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C4orf40	NM_214711	exon3	c.C547A	p.P183T	GAGGCACCTGTTG	.	250.0	16.0	93.0	0.0	.	19	.	.	Atlas-SNP
MUC7	4589	hgsc.bcm.edu	hg19	4	71346814	71346814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MUC7	NM_001145007	exon4	c.C353T	p.S118L	TCCCATCAGCTTC	.	211.0	12.0	65.0	0.0	.	91	.	.	Atlas-SNP
STBD1	8987	hgsc.bcm.edu	hg19	4	77230589	77230589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STBD1	NM_003943	exon2	c.G513T	p.E171D	TGCAGAGAAGTTG	.	137.0	15.0	65.0	0.0	.	22	.	.	Atlas-SNP
STBD1	8987	hgsc.bcm.edu	hg19	4	77230700	77230700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STBD1	NM_003943	exon2	c.G624T	p.R208S	GCCTAGGCACTCA	.	124.0	11.0	72.0	0.0	.	22	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79455713	79455713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FRAS1	NM_025074	exon71	c.C11036T	p.P3679L	TGGATCCCAATAC	.	199.0	8.0	59.0	0.0	.	779	.	.	Atlas-SNP
ANXA3	306	hgsc.bcm.edu	hg19	4	79503384	79503384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ANXA3	NM_005139	exon5	c.G252A	p.M84I	TCTCATGGTGGCC	.	219.0	15.0	103.0	0.0	.	35	.	.	Atlas-SNP
FGF5	2250	hgsc.bcm.edu	hg19	4	81207740	81207740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FGF5	NM_004464	exon3	c.A721C	p.S241R	CCACCTAGCCCTA	.	114.0	10.0	61.0	0.0	.	49	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87643424	87643424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PTPN13	NM_006264	exon10	c.G1445A	p.R482Q	TAAAACGGCAAGA	.	268.0	111.0	116.0	0.0	.	203	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90170546	90170546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	GPRIN3,NS,carcinoma,0,1	GPRIN3	NM_198281	exon2	c.C716T	p.T239I	TCTCTAGTTAGAG	.	93.0	9.0	50.0	0.0	.	90	.	.	Atlas-SNP
ADH6	130	hgsc.bcm.edu	hg19	4	100134799	100134799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ADH6	NM_000672	exon3	c.G226A	p.E76K	TACTCTCAACGAT	.	143.0	8.0	81.0	0.0	.	74	.	.	Atlas-SNP
DKK2	27123	hgsc.bcm.edu	hg19	4	107845310	107845310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	DKK2,NS,neuroblastoma,0,1	DKK2	NM_014421	exon4	c.G581A	p.C194Y	GCACAGCAAAACC	.	191.0	16.0	69.0	0.0	.	96	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114274329	114274329	+	Missense_Mutation	SNP	G	G	A	rs200920714	bycluster;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ANK2,caecum,carcinoma,0,1	ANK2	NM_001148	exon38	c.G4555A	p.A1519T	ATGACCGCCATCT	.	92.0	6.0	49.0	0.0	.	576	.	G|0.999;T|0.001	Atlas-SNP
PABPC4L	132430	hgsc.bcm.edu	hg19	4	135121309	135121309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PABPC4L	NM_001114734	exon2	c.G1040T	p.G347V	TGGCACCCACGAA	.	117.0	12.0	50.0	0.0	.	60	.	.	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	hg19	4	144467138	144467138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SMARCA5	NM_003601	exon19	c.A2458G	p.I820V	CTTAAAATTGATG	.	300.0	17.0	89.0	0.0	.	73	.	.	Atlas-SNP
GYPA	2993	hgsc.bcm.edu	hg19	4	145039884	145039884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	GYPA,right_upper_lobe,carcinoma,0,1	GYPA	NM_002099	exon4	c.A254T	p.H85L	AAATGATGGGCAA	.	662.0	43.0	170.0	0.0	.	27	.	.	Atlas-SNP
ZNF827	152485	hgsc.bcm.edu	hg19	4	146824067	146824067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF827	NM_178835	exon2	c.C344A	p.S115Y	TTGTTGGAGCCTG	.	70.0	5.0	32.0	0.0	.	102	.	.	Atlas-SNP
ZNF827	152485	hgsc.bcm.edu	hg19	4	146824068	146824068	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF827	NM_178835	exon2	c.T343A	p.S115T	TGTTGGAGCCTGG	.	69.0	5.0	32.0	0.0	.	102	.	.	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148886196	148886196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARHGAP10	NM_024605	exon17	c.G1472A	p.R491H	AATCTCGTGTTAA	.	353.0	155.0	117.0	0.0	.	92	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155278437	155278437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DCHS2	NM_017639	exon6	c.A734G	p.N245S	GAAAAGTTGACAG	.	66.0	4.0	47.0	0.0	.	594	.	.	Atlas-SNP
NPY2R	4887	hgsc.bcm.edu	hg19	4	156135578	156135578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	NPY2R,right_upper_lobe,carcinoma,0,1	NPY2R	NM_000910	exon2	c.C487G	p.R163G	TCCAAGCGAATCA	.	70.0	8.0	14.0	0.0	.	87	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158262498	158262498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GRIA2	NM_000826	exon12	c.G1927A	p.A643T	TTAGCTGCCTTCC	.	385.0	36.0	163.0	0.0	.	358	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158262499	158262499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GRIA2	NM_000826	exon12	c.C1928A	p.A643D	TAGCTGCCTTCCT	.	380.0	35.0	162.0	0.0	.	358	.	.	Atlas-SNP
FNIP2	57600	hgsc.bcm.edu	hg19	4	159790073	159790073	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FNIP2	NM_020840	exon13	c.A2285T	p.Q762L	ACCCGCAGGTTTC	.	103.0	7.0	32.0	0.0	.	90	.	.	Atlas-SNP
NPY5R	4889	hgsc.bcm.edu	hg19	4	164272591	164272591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NPY5R	NM_006174	exon4	c.T1166A	p.V389E	TCCATGTGGTAAC	.	135.0	13.0	77.0	0.0	.	101	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3599577	3599577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IRX1	NM_024337	exon2	c.C515A	p.T172K	CCCTCACGCAGGT	.	200.0	31.0	97.0	0.0	.	106	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11082847	11082847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	CTNND2,NS,carcinoma,0,1	CTNND2	NM_001332	exon16	c.C2749T	p.R917W	TGTTCCGCAGCGC	.	110.0	9.0	43.0	0.0	.	289	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13770967	13770967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH5	NM_001369	exon56	c.A9496G	p.R3166G	GGAATCTCTGAAA	.	236.0	18.0	71.0	0.0	.	868	.	.	Atlas-SNP
PRLR	5618	hgsc.bcm.edu	hg19	5	35089695	35089695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PRLR	NM_000949	exon3	c.G28A	p.V10I	TGAAAACGGTTGC	.	86.0	13.0	64.0	0.0	.	90	.	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38370498	38370498	+	Missense_Mutation	SNP	G	G	T	rs369204325	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EGFLAM	NM_001205301	exon6	c.G646T	p.V216L	TTTGCCGTGAGGG	.	154.0	22.0	38.0	0.0	.	302	.	.	Atlas-SNP
SEPP1	6414	hgsc.bcm.edu	hg19	5	42804757	42804757	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SEPP1	NM_005410	exon5	c.534+1G>T	.	AAAATACCGTGAG	.	295.0	17.0	107.0	0.0	.	33	.	.	Atlas-SNP
PDE4D	5144	hgsc.bcm.edu	hg19	5	58882174	58882174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PDE4D	NM_006203	exon1	c.A28G	p.R10G	GCCTTCTAAAGGG	.	210.0	13.0	88.0	0.0	.	345	.	.	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	hg19	5	64976616	64976616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SGTB	NM_019072	exon7	c.C485T	p.A162V	GTGAGGGCCAGCC	.	136.0	68.0	55.0	0.0	.	22	.	.	Atlas-SNP
AGGF1	55109	hgsc.bcm.edu	hg19	5	76342270	76342270	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AGGF1	NM_018046	exon6	c.C969T	p.G323G	AATAGGCATTCAT	.	213.0	17.0	84.0	0.0	.	71	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89910835	89910835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GPR98	NM_032119	exon2	c.C206A	p.S69X	TTGTATCGGTAAG	.	208.0	16.0	65.0	0.0	.	605	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95226823	95226823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ELL2	NM_012081	exon10	c.G1745T	p.G582V	TTTGAGCCTGGAG	.	172.0	15.0	91.0	0.0	.	63	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95226961	95226961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ELL2,caecum,carcinoma,0,1	ELL2	NM_012081	exon10	c.T1607A	p.V536D	TAGGAGACGATAG	.	86.0	11.0	50.0	0.0	.	63	.	.	Atlas-SNP
REEP5	7905	hgsc.bcm.edu	hg19	5	112238112	112238112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	REEP5	NM_005669	exon3	c.T316C	p.F106L	ACAGGAAGATATC	.	196.0	17.0	66.0	0.0	.	12	.	.	Atlas-SNP
FEM1C	56929	hgsc.bcm.edu	hg19	5	114861063	114861063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FEM1C	NM_020177	exon3	c.T796G	p.L266V	ATTTCAAAGCCCC	.	282.0	12.0	99.0	0.0	.	50	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118485268	118485268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DMXL1	NM_005509	exon18	c.C3746T	p.P1249L	AAGAACCTGTTAT	.	108.0	8.0	45.0	0.0	.	268	.	.	Atlas-SNP
PRR16	51334	hgsc.bcm.edu	hg19	5	120021691	120021691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PRR16	NM_016644	exon3	c.G133C	p.E45Q	CAGCTGGAGGATG	.	39.0	19.0	35.0	0.0	.	71	.	.	Atlas-SNP
FAM53C	51307	hgsc.bcm.edu	hg19	5	137681062	137681062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FAM53C	NM_001135647	exon4	c.C685T	p.R229C	CCTCAGCGCCGCT	.	71.0	5.0	25.0	0.0	.	35	.	.	Atlas-SNP
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140347607	140347607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PCDHAC2	NM_031883	exon1	c.A1256G	p.Y419C	ACTCCTATACACT	.	75.0	11.0	22.0	0.0	.	142	.	.	Atlas-SNP
PCDHGC5	56097	hgsc.bcm.edu	hg19	5	140871119	140871119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PCDHGC5	NM_018929	exon1	c.G2312A	p.S771N	CGCAGAGCCACTG	.	84.0	24.0	42.0	0.0	.	199	.	.	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	hg19	5	147819259	147819259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FBXO38	NM_030793	exon19	c.A2849G	p.Y950C	ACCCCTATCACAT	.	186.0	57.0	83.0	0.0	.	115	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148406879	148406879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SH3TC2	NM_024577	exon11	c.T2416C	p.Y806H	AGAGATAGGCCCA	.	91.0	4.0	36.0	0.0	.	178	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148411195	148411195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SH3TC2	NM_024577	exon9	c.G1057T	p.G353X	CACTTCCCAGGGC	.	138.0	15.0	56.0	0.0	.	178	.	.	Atlas-SNP
PDGFRB	5159	hgsc.bcm.edu	hg19	5	149497264	149497264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PDGFRB	NM_002609	exon22	c.C3054A	p.D1018E	GTCGTTGTCACCC	.	50.0	19.0	35.0	0.0	.	142	.	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167891765	167891765	+	Missense_Mutation	SNP	G	G	A	rs139653620	bycluster	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	WWC1,colon,carcinoma,0,2	WWC1	NM_001161662	exon21	c.G2966A	p.R989H	CCGAGCGTCTGAT	.	130.0	6.0	42.0	0.0	.	98	.	G|1.000;A|0.000	Atlas-SNP
FOXI1	2299	hgsc.bcm.edu	hg19	5	169535204	169535204	+	Missense_Mutation	SNP	C	C	A	rs35678180	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FOXI1	NM_012188	exon2	c.C726A	p.S242R	GGACAGCCCCAAG	.	157.0	8.0	39.0	0.0	.	70	.	C|0.995;T|0.005	Atlas-SNP
LCP2	3937	hgsc.bcm.edu	hg19	5	169685155	169685155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LCP2	NM_005565	exon16	c.T986C	p.L329S	TGGGGCAAAGGTC	.	156.0	13.0	54.0	0.0	.	133	.	.	Atlas-SNP
DBN1	1627	hgsc.bcm.edu	hg19	5	176895871	176895871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DBN1	NM_080881	exon3	c.A122T	p.D41V	AGGTCATCGGAGC	.	143.0	11.0	53.0	0.0	.	122	.	.	Atlas-SNP
PDLIM7	9260	hgsc.bcm.edu	hg19	5	176916422	176916422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PDLIM7	NM_005451	exon9	c.G841A	p.V281M	GACACACGGGAGT	.	66.0	26.0	56.0	0.0	.	32	.	.	Atlas-SNP
BTNL3	10917	hgsc.bcm.edu	hg19	5	180432823	180432823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	BTNL3	NM_197975	exon8	c.A1352C	p.D451A	TGTATGACGAGGA	.	245.0	14.0	67.0	0.0	.	55	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15507624	15507624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	JARID2	NM_004973	exon11	c.T2708A	p.L903Q	CCATCCTGCGTCA	.	119.0	7.0	46.0	0.0	.	135	.	.	Atlas-SNP
PRL	5617	hgsc.bcm.edu	hg19	6	22294684	22294684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PRL	NM_000948	exon2	c.T158A	p.L53Q	TGGGACAGGACGA	.	360.0	16.0	79.0	0.0	.	41	.	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156943	26156943	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HIST1H1E	NM_005321	exon1	c.A325T	p.K109X	CTCAACAAGAAGG	.	217.0	19.0	55.0	0.0	.	69	.	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156946	26156946	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HIST1H1E	NM_005321	exon1	c.A328T	p.K110X	AACAAGAAGGCGG	.	219.0	18.0	55.0	0.0	.	69	.	.	Atlas-SNP
PGBD1	84547	hgsc.bcm.edu	hg19	6	28268674	28268674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	PGBD1,NS,carcinoma,0,1	PGBD1	NM_001184743	exon7	c.C1043T	p.A348V	ACAAAGCTCGAGT	.	157.0	12.0	62.0	0.0	.	106	.	.	Atlas-SNP
PGBD1	84547	hgsc.bcm.edu	hg19	6	28268801	28268801	+	Missense_Mutation	SNP	G	G	C	rs143874020		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PGBD1	NM_001184743	exon7	c.G1170C	p.W390C	GAGTTGGACCAAA	.	129.0	10.0	34.0	0.0	.	106	.	G|1.000;C|0.000	Atlas-SNP
PGBD1	84547	hgsc.bcm.edu	hg19	6	28269056	28269056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PGBD1	NM_001184743	exon7	c.G1425T	p.R475S	TAGAAGGGAAATG	.	338.0	17.0	107.0	0.0	.	106	.	.	Atlas-SNP
OR11A1	26531	hgsc.bcm.edu	hg19	6	29395051	29395051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR11A1	NM_013937	exon1	c.G368A	p.R123H	AGGTAGCGGTCAT	.	231.0	13.0	58.0	0.0	.	30	.	.	Atlas-SNP
PPT2	9374	hgsc.bcm.edu	hg19	6	32123651	32123651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PPT2	NM_138717	exon5	c.C455T	p.T152M	CAGACACGGACTA	.	433.0	19.0	109.0	0.0	.	19	.	.	Atlas-SNP
ZBTB9	221504	hgsc.bcm.edu	hg19	6	33423961	33423961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZBTB9	NM_152735	exon2	c.G1084A	p.G362R	CCTGGGGGAGCAG	.	81.0	25.0	26.0	0.0	.	23	.	.	Atlas-SNP
C6orf106	64771	hgsc.bcm.edu	hg19	6	34574641	34574641	+	Silent	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C6orf106	NM_024294	exon4	c.T552G	p.L184L	TCCTAAAAGTCCA	.	50.0	15.0	26.0	0.0	.	29	.	.	Atlas-SNP
UHRF1BP1	54887	hgsc.bcm.edu	hg19	6	34802105	34802105	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	UHRF1BP1	NM_017754	exon5	c.C450A	p.L150L	GCAGCTCCAGGGC	.	278.0	163.0	82.0	0.0	.	102	.	.	Atlas-SNP
RPL10A	4736	hgsc.bcm.edu	hg19	6	35436589	35436589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RPL10A	NM_007104	exon2	c.C19G	p.R7G	GTCTCTCGCGACA	.	52.0	19.0	24.0	0.0	.	13	.	.	Atlas-SNP
KCTD20	222658	hgsc.bcm.edu	hg19	6	36447368	36447368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCTD20	NM_173562	exon5	c.G538T	p.D180Y	TTACAGGATTATT	.	84.0	6.0	37.0	0.0	.	37	.	.	Atlas-SNP
CDKN1A	1026	hgsc.bcm.edu	hg19	6	36651880	36651880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDKN1A	NM_001220778	exon2	c.T2G	p.M1R	GCGCCATGTCAGA	.	140.0	29.0	30.0	0.0	.	27	.	.	Atlas-SNP
CDKN1A	1026	hgsc.bcm.edu	hg19	6	36651881	36651881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDKN1A	NM_001220778	exon2	c.G3T	p.M1I	CGCCATGTCAGAA	.	139.0	28.0	30.0	0.0	.	27	.	.	Atlas-SNP
PGC	5225	hgsc.bcm.edu	hg19	6	41707607	41707607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PGC	NM_002630	exon7	c.T845C	p.L282P	ACAGTGAGCAGAG	.	180.0	8.0	50.0	0.0	.	56	.	.	Atlas-SNP
USP49	25862	hgsc.bcm.edu	hg19	6	41773689	41773689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	USP49	NM_018561	exon4	c.A1033C	p.I345L	TCTGGATGAGCTC	.	101.0	16.0	14.0	0.0	.	58	.	.	Atlas-SNP
PPP2R5D	5528	hgsc.bcm.edu	hg19	6	42978962	42978962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PPP2R5D	NM_006245	exon16	c.A1747C	p.K583Q	ACCATCAAGGCAC	.	246.0	29.0	62.0	0.0	.	47	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274043	43274043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CRIP3	NM_206922	exon6	c.G409A	p.V137M	ACATCACCTTCTC	.	173.0	24.0	41.0	0.0	.	30	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274045	43274045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CRIP3	NM_206922	exon6	c.A407T	p.K136M	ATCACCTTCTCAG	.	175.0	26.0	41.0	0.0	.	30	.	.	Atlas-SNP
CRIP3	401262	hgsc.bcm.edu	hg19	6	43274046	43274046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CRIP3	NM_206922	exon6	c.A406G	p.K136E	TCACCTTCTCAGC	.	170.0	22.0	40.0	0.0	.	30	.	.	Atlas-SNP
CLIC5	53405	hgsc.bcm.edu	hg19	6	45922898	45922898	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CLIC5	NM_001114086	exon2	c.C624T	p.F208F	GACATTGAACACG	.	198.0	20.0	42.0	0.0	.	48	.	.	Atlas-SNP
PLA2G7	7941	hgsc.bcm.edu	hg19	6	46672428	46672428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLA2G7	NM_005084	exon12	c.C1195G	p.H399D	CTTTATGAAGTCC	.	306.0	26.0	92.0	0.0	.	49	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46976681	46976681	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GPR110	NM_153840	exon11	c.G2490C	p.Q830H	TCTCACCTGGAAT	.	226.0	19.0	67.0	0.0	.	102	.	.	Atlas-SNP
PGK2	5232	hgsc.bcm.edu	hg19	6	49753721	49753721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PGK2	NM_138733	exon1	c.A1180T	p.T394S	CTCCAGTGCTGAC	.	187.0	8.0	50.0	0.0	.	87	.	.	Atlas-SNP
IL17F	112744	hgsc.bcm.edu	hg19	6	52101936	52101936	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IL17F	NM_052872	exon3	c.G285A	p.S95S	AACTTCCGAGGGG	.	96.0	8.0	30.0	0.0	.	28	.	.	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	hg19	6	70993489	70993489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL9A1	NM_001851	exon6	c.C731A	p.P244H	CGCAGGGGGTCAC	.	170.0	26.0	61.0	0.0	.	228	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75884785	75884785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL12A1	NM_004370	exon13	c.C2679A	p.D893E	GAGGGCGTCTCCA	.	108.0	5.0	66.0	0.0	.	385	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76024218	76024218	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FILIP1	NM_015687	exon5	c.A1330T	p.K444X	TACTCTTGCTAAA	.	236.0	36.0	148.0	0.0	.	173	.	.	Atlas-SNP
ME1	4199	hgsc.bcm.edu	hg19	6	84117526	84117526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ME1	NM_002395	exon2	c.T173A	p.V58E	TTTACTACTCTAA	.	85.0	12.0	61.0	0.0	.	68	.	.	Atlas-SNP
GPR63	81491	hgsc.bcm.edu	hg19	6	97246970	97246970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GPR63	NM_030784	exon2	c.T638C	p.L213S	ACGGCTAAAGGAA	.	86.0	25.0	62.0	0.0	.	60	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99322272	99322272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FBXL4	NM_012160	exon9	c.C1748A	p.S583Y	TTACAAGATTCCA	.	164.0	13.0	91.0	0.0	.	54	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111678241	111678241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	REV3L	NM_002912	exon18	c.A7160T	p.H2387L	ATTTCATGAAAAA	.	165.0	27.0	93.0	0.0	.	386	.	.	Atlas-SNP
HDAC2	3066	hgsc.bcm.edu	hg19	6	114264582	114264582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HDAC2	NM_001527	exon12	c.T1311A	p.D437E	CTTATGATCAGCC	.	72.0	11.0	71.0	0.0	.	102	.	.	Atlas-SNP
TPD52L1	7164	hgsc.bcm.edu	hg19	6	125584076	125584076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TPD52L1	NM_003287	exon7	c.C583T	p.R195W	GGCTCCCGGCGGA	.	51.0	15.0	22.0	0.0	.	14	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151161944	151161944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLEKHG1	NM_001029884	exon17	c.T4070G	p.L1357R	ACTATCTTTGGAG	.	77.0	8.0	67.0	0.0	.	97	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152583243	152583243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SYNE1	NM_182961	exon101	c.G18896T	p.W6299L	CTTTCCCATTTCA	.	147.0	18.0	123.0	0.0	.	3227	.	.	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	hg19	6	165846593	165846593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PDE10A	NM_001130690	exon7	c.G562C	p.G188R	CCAGTCCAGTACC	.	160.0	10.0	88.0	0.0	.	154	.	.	Atlas-SNP
PHF10	55274	hgsc.bcm.edu	hg19	6	170105298	170105298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PHF10	NM_018288	exon11	c.A1342G	p.M448V	ACATCATTTCTTC	.	97.0	18.0	72.0	0.0	.	76	.	.	Atlas-SNP
FSCN1	6624	hgsc.bcm.edu	hg19	7	5643546	5643546	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FSCN1	NM_003088	exon4	c.C1164T	p.F388F	CGTGTTCCGCGGG	.	89.0	59.0	26.0	0.0	.	29	.	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	hg19	7	6590947	6590947	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GRID2IP	NM_001145118	exon1	c.G121C	p.G41R	GTCCTCCGGCATG	.	26.0	12.0	6.0	0.0	.	82	.	.	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	hg19	7	24705683	24705683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MPP6	NM_016447	exon9	c.G927C	p.M309I	AAAGATGATGTAT	.	176.0	8.0	69.0	0.0	.	62	.	.	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	hg19	7	43484350	43484350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HECW1	NM_015052	exon11	c.T1579A	p.S527T	CGGGCCTCGGTGA	.	155.0	24.0	42.0	0.0	.	540	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47876625	47876625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PKD1L1	NM_138295	exon37	c.C5837T	p.P1946L	GAGGAGGGCCTGC	.	149.0	71.0	34.0	0.0	.	328	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48443391	48443391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ABCA13	NM_152701	exon39	c.G11985T	p.R3995S	GTCGAGGACCGTG	.	115.0	11.0	61.0	0.0	.	1192	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48559659	48559659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ABCA13	NM_152701	exon53	c.T13820C	p.V4607A	ATGATGTCCTCAA	.	177.0	97.0	56.0	0.0	.	1192	.	.	Atlas-SNP
GUSB	2990	hgsc.bcm.edu	hg19	7	65440043	65440043	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GUSB	NM_000181	exon6	c.C928T	p.Q310X	ACGTCTGTGCAGT	.	110.0	65.0	25.0	0.0	.	52	.	.	Atlas-SNP
TPST1	8460	hgsc.bcm.edu	hg19	7	65751568	65751568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TPST1	NM_003596	exon3	c.A916G	p.I306V	GGGAAGATACCGC	.	92.0	8.0	56.0	0.0	.	25	.	.	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	hg19	7	76142448	76142448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	UPK3B	NM_182684	exon4	c.C509A	p.T170N	CTGAGACCAAGTG	.	201.0	42.0	88.0	0.0	.	15	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77569480	77569480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PHTF2	NM_001127357	exon12	c.C1499A	p.S500X	CTGCTTCAGAACT	.	367.0	38.0	133.0	0.0	.	104	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82585390	82585390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PCLO	NM_014510	exon5	c.C4879T	p.H1627Y	ATGAGTGACGTCT	.	197.0	52.0	92.0	0.0	.	1506	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83590805	83590805	+	Missense_Mutation	SNP	C	C	A	rs318240753	bycluster;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SEMA3A	NM_006080	exon17	c.G2198T	p.R733L	TGCCGACGTTGTT	.	385.0	21.0	148.0	0.0	.	121	.	.	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94293700	94293700	+	Missense_Mutation	SNP	C	C	T	rs376581536		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PEG10	NM_001172438	exon2	c.C1060T	p.R354C	GGTGCCCGCATGC	.	112.0	7.0	20.0	0.0	.	36	.	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	hg19	7	99693701	99693701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MCM7	NM_005916	exon11	c.G1291T	p.G431C	CCCCACCCTCTAA	.	160.0	11.0	25.0	0.0	.	136	.	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	hg19	7	99697309	99697309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MCM7	NM_005916	exon3	c.C179G	p.P60R	AACTCGGGGTCAT	.	93.0	13.0	17.0	0.0	.	136	.	.	Atlas-SNP
PVRIG	79037	hgsc.bcm.edu	hg19	7	99818613	99818613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PVRIG	NM_024070	exon6	c.C720A	p.C240X	CAGCTGCCGCCCA	.	173.0	14.0	66.0	0.0	.	20	.	.	Atlas-SNP
GNB2	2783	hgsc.bcm.edu	hg19	7	100274386	100274386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GNB2	NM_005273	exon4	c.C167A	p.A56E	ACCTGGCAAAGAT	.	78.0	23.0	28.0	0.0	.	29	.	.	Atlas-SNP
SLC12A9	56996	hgsc.bcm.edu	hg19	7	100452001	100452001	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC12A9	NM_020246	exon2	c.181+1G>T	.	GGATTGGTGAGTG	.	395.0	18.0	145.0	0.0	.	81	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103276844	103276844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RELN	NM_173054	exon18	c.G2141A	p.S714N	CCAAAGCTTTCAG	.	220.0	10.0	73.0	0.0	.	593	.	.	Atlas-SNP
PNPLA8	50640	hgsc.bcm.edu	hg19	7	108155899	108155899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PNPLA8	NM_001256008	exon2	c.C37T	p.L13F	TAAGGAGGTAAAT	.	119.0	8.0	48.0	0.0	.	82	.	.	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	hg19	7	119914945	119914945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCND2	NM_012281	exon1	c.C259A	p.R87S	TTTGACCGTGACC	.	138.0	11.0	48.0	0.0	.	194	.	.	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	hg19	7	119915059	119915059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	KCND2,NS,carcinoma,0,1	KCND2	NM_012281	exon1	c.A373G	p.I125V	GGCCTCATCCCGG	.	128.0	17.0	34.0	0.0	.	194	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121684477	121684477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PTPRZ1	NM_002851	exon23	c.A5939G	p.E1980G	GCCAGGAGCAATA	.	373.0	183.0	135.0	0.0	.	605	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128449544	128449544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CCDC136	NM_022742	exon11	c.A1646T	p.K549M	AGGAAAAGTACAA	.	528.0	25.0	110.0	0.0	.	170	.	.	Atlas-SNP
AGBL3	340351	hgsc.bcm.edu	hg19	7	134717660	134717660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AGBL3	NM_178563	exon6	c.G484A	p.V162M	CAGCCTGTGGATT	.	198.0	17.0	69.0	0.0	.	45	.	.	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	hg19	7	135047915	135047915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CNOT4	NM_001190850	exon12	c.A1864G	p.S622G	CTAAACTGTTTCC	.	90.0	60.0	40.0	0.0	.	146	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143039472	143039472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CLCN1	NM_000083	exon16	c.A1804G	p.T602A	AAATATACCATCT	.	210.0	10.0	74.0	0.0	.	141	.	.	Atlas-SNP
CHPF2	54480	hgsc.bcm.edu	hg19	7	150934562	150934562	+	Missense_Mutation	SNP	G	G	A	rs139379425	bycluster;byfrequency;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CHPF2	NM_019015	exon4	c.G1114A	p.V372M	TTTGAGGTGCTGG	.	159.0	9.0	44.0	0.0	.	52	.	G|1.000;T|0.000	Atlas-SNP
DLGAP2	9228	hgsc.bcm.edu	hg19	8	1616828	1616828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	DLGAP2_ENST00000356067,NS,carcinoma,0,2	DLGAP2	NM_004745	exon6	c.C1904T	p.S635F	GCTGCTCCTCCAT	.	49.0	2.0	23.0	0.0	.	292	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10470139	10470139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	RP1L1,bladder,carcinoma,-1,1	RP1L1	NM_178857	exon4	c.G1469T	p.G490V	TCAGCCCCTATCT	.	30.0	5.0	30.0	0.0	.	453	.	.	Atlas-SNP
FGF20	26281	hgsc.bcm.edu	hg19	8	16853235	16853235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FGF20	NM_019851	exon2	c.C319A	p.L107M	TGACCAGTCCCAC	.	97.0	21.0	69.0	0.0	.	16	.	.	Atlas-SNP
MTMR7	9108	hgsc.bcm.edu	hg19	8	17198903	17198903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MTMR7	NM_004686	exon6	c.A701G	p.D234G	ACGAAGTCACTTC	.	73.0	8.0	46.0	0.0	.	75	.	.	Atlas-SNP
PPP2CB	5516	hgsc.bcm.edu	hg19	8	30643819	30643819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PPP2CB	NM_001009552	exon7	c.C862T	p.Q288X	CAAATTGAAGGCT	.	34.0	5.0	25.0	0.0	.	27	.	.	Atlas-SNP
ZMAT4	79698	hgsc.bcm.edu	hg19	8	40683185	40683185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZMAT4	NM_024645	exon2	c.C11T	p.S4F	ATATCGGAGGACT	.	78.0	8.0	28.0	0.0	.	47	.	.	Atlas-SNP
HGSNAT	138050	hgsc.bcm.edu	hg19	8	43033222	43033222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HGSNAT	NM_152419	exon10	c.T857A	p.V286E	GGTTTGTATTTAT	.	225.0	17.0	101.0	0.0	.	85	.	.	Atlas-SNP
OPRK1	4986	hgsc.bcm.edu	hg19	8	54147486	54147486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OPRK1	NM_000912	exon3	c.C443G	p.T148S	GTCAAGGTGAAGA	.	189.0	12.0	62.0	0.0	.	90	.	.	Atlas-SNP
TRIM55	84675	hgsc.bcm.edu	hg19	8	67067941	67067941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRIM55	NM_033058	exon10	c.A1608C	p.L536F	TACTTTAATGGGT	.	288.0	26.0	136.0	0.0	.	91	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68934295	68934295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PREX2	NM_025170	exon4	c.G361C	p.E121Q	TATGATGAATATT	.	93.0	7.0	40.0	0.0	.	614	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73848335	73848335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCNB2	NM_004770	exon3	c.C745G	p.L249V	GAGTACCTTTTGC	.	405.0	34.0	134.0	0.0	.	228	.	.	Atlas-SNP
LRRCC1	85444	hgsc.bcm.edu	hg19	8	86057622	86057622	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	LRRCC1_ENST00000414626,NS,carcinoma,0,2	LRRCC1	NM_033402	exon19	c.2977-2A>T	.	CGATTTAGGTCCA	.	300.0	141.0	109.0	0.0	.	212	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	hg19	8	99560362	99560362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STK3	NM_001256312	exon11	c.A1060T	p.M354L	TCACCATGGTGTG	.	212.0	9.0	61.0	0.0	.	47	.	.	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105360964	105360964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_001257317	exon2	c.G184A	p.A62T	GCGGCCGCTGCCT	.	298.0	88.0	106.0	0.0	.	.	.	.	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105361088	105361088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_001257317	exon2	c.C308A	p.T103K	CTGGCACAGGGAT	.	344.0	20.0	103.0	0.0	.	.	.	.	Atlas-SNP
ABRA	137735	hgsc.bcm.edu	hg19	8	107782232	107782232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ABRA,NS,carcinoma,0,1	ABRA	NM_139166	exon1	c.C187G	p.P63A	GTTTAGGAGCTTG	.	451.0	292.0	127.0	0.0	.	57	.	.	Atlas-SNP
OC90	729330	hgsc.bcm.edu	hg19	8	133053841	133053841	+	Missense_Mutation	SNP	C	C	A	rs372434452	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OC90	NM_001080399	exon5	c.G275T	p.R92L	AAGTCTCGGGGGC	.	447.0	18.0	69.0	0.0	.	163	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	hg19	8	133153576	133153576	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCNQ3	NM_004519	exon10	c.A1265T	p.Q422L	AGCTTTTGGCTAC	.	133.0	20.0	38.0	0.0	.	164	.	.	Atlas-SNP
TSTA3	7264	hgsc.bcm.edu	hg19	8	144698895	144698895	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TSTA3	.	.	.	.	TGCACCTGTAATG	.	176.0	20.0	41.0	0.0	.	23	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	738429	738429	+	Missense_Mutation	SNP	G	G	A	rs374492770	bycluster	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KANK1	NM_001256876	exon12	c.G3478A	p.G1160S	GCAGACGGCAACG	.	175.0	16.0	92.0	0.0	.	231	.	.	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718262	2718262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	KCNV2,NS,carcinoma,0,1	KCNV2	NM_133497	exon1	c.G523A	p.G175R	CTCGACGGGCTGT	.	55.0	22.0	22.0	0.0	.	72	.	.	Atlas-SNP
RFX3	5991	hgsc.bcm.edu	hg19	9	3346710	3346710	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RFX3	NM_134428	exon4	c.C172T	p.Q58X	CATACTGCACCTG	.	137.0	6.0	69.0	0.0	.	156	.	.	Atlas-SNP
PLIN2	123	hgsc.bcm.edu	hg19	9	19121143	19121143	+	Silent	SNP	G	G	A	rs368424624		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLIN2	NM_001122	exon5	c.C330T	p.G110G	CACAGCGCCTTTG	.	76.0	15.0	46.0	0.0	.	41	.	.	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	hg19	9	21409564	21409564	+	Missense_Mutation	SNP	T	T	C	rs28383787	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IFNA8	NM_002170	exon1	c.T389C	p.I130T	GGGTGATAGAGTC	.	236.0	11.0	110.0	0.0	.	19	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79322715	79322715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PRUNE2	NM_015225	exon8	c.G4475T	p.G1492V	ACGTCCCCAAAAT	.	70.0	31.0	42.0	0.0	.	331	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79824389	79824389	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	VPS13A	NM_001018038	exon6	c.C436T	p.Q146X	GTTACACAGATCA	.	282.0	23.0	99.0	0.0	.	735	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79867172	79867172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	VPS13A_ENST00000376634,caecum,carcinoma,0,3	VPS13A	NM_001018038	exon22	c.G2192A	p.R731Q	AAGCACGAAAACT	.	121.0	7.0	77.0	0.0	.	735	.	.	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90745601	90745601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_001166137	exon4	c.G2351T	p.S784I	CTCCTGCTCTGCT	.	163.0	54.0	57.0	0.0	.	.	.	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101749575	101749575	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL15A1	NM_001855	exon4	c.649-1G>A	.	TCCCCAGGGCTCC	.	91.0	16.0	38.0	0.0	.	211	.	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	hg19	9	104449365	104449365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GRIN3A	NM_133445	exon2	c.G817T	p.D273Y	TCCAGTCTTCCTG	.	193.0	13.0	89.0	0.0	.	186	.	.	Atlas-SNP
SMC2	10592	hgsc.bcm.edu	hg19	9	106894408	106894408	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SMC2	NM_001042551	exon22	c.3108+2T>G	.	AAAAGGTACTTTT	.	435.0	47.0	144.0	0.0	.	127	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114202776	114202776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KIAA0368	NM_001080398	exon7	c.C949A	p.L317I	GAAAAAGGGTTGG	.	86.0	29.0	39.0	0.0	.	144	.	.	Atlas-SNP
ALAD	210	hgsc.bcm.edu	hg19	9	116151330	116151330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ALAD	NM_000031	exon11	c.G858C	p.W286C	TCCATGCCACAGC	.	121.0	11.0	47.0	0.0	.	36	.	.	Atlas-SNP
ZBTB6	10773	hgsc.bcm.edu	hg19	9	125674263	125674263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZBTB6	NM_006626	exon2	c.A89G	p.N30S	AATAAATTCTGCT	.	241.0	33.0	96.0	0.0	.	32	.	.	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	hg19	9	127561615	127561615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OLFML2A	NM_182487	exon4	c.C514A	p.R172S	AGCGTGCGCCACC	.	132.0	57.0	54.0	0.0	.	61	.	.	Atlas-SNP
CDK9	1025	hgsc.bcm.edu	hg19	9	130550943	130550943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDK9	NM_001261	exon6	c.G725T	p.S242I	TCATCAGTCAGCT	.	404.0	96.0	95.0	0.0	.	22	.	.	Atlas-SNP
ODF2	4957	hgsc.bcm.edu	hg19	9	131256871	131256871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ODF2_ENST00000372814,NS,carcinoma,0,2	ODF2	NM_153435	exon17	c.A2027C	p.E676A	TGGCTGAGTGCCA	.	153.0	26.0	58.0	0.0	.	227	.	.	Atlas-SNP
PPP2R4	5524	hgsc.bcm.edu	hg19	9	131909700	131909700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PPP2R4	NM_178001	exon11	c.A1034G	p.K345R	ACTTCAAGTTCGG	.	76.0	24.0	26.0	0.0	.	32	.	.	Atlas-SNP
PPP2R4	5524	hgsc.bcm.edu	hg19	9	131909703	131909703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PPP2R4	NM_178001	exon11	c.T1037C	p.F346S	TCAAGTTCGGGAG	.	74.0	25.0	25.0	0.0	.	32	.	.	Atlas-SNP
C9orf96	169436	hgsc.bcm.edu	hg19	9	136269044	136269044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C9orf96	NM_153710	exon16	c.G1604T	p.G535V	CTGCAGGCTGCAT	.	93.0	12.0	22.0	0.0	.	77	.	.	Atlas-SNP
RXRA	6256	hgsc.bcm.edu	hg19	9	137328351	137328351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	RXRA,bladder,carcinoma,0,5	RXRA	NM_002957	exon10	c.C1280T	p.S427F	TGCGCTCCATCGG	.	134.0	9.0	46.0	0.0	.	52	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140880982	140880982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CACNA1B	NM_001243812	exon14	c.G1887T	p.Q629H	GATGCAGCTGTTT	.	187.0	22.0	99.0	0.0	.	266	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	390969	390969	+	Missense_Mutation	SNP	C	C	A	rs200340134	by1000genomes;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DIP2C	NM_014974	exon27	c.G3313T	p.V1105F	TCCTGACGTCCAC	.	68.0	4.0	22.0	0.0	.	195	.	C|1.000;T|0.000	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3201169	3201169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PITRM1	NM_014889	exon10	c.A1073G	p.N358S	GGAGAATTGGGCC	.	230.0	73.0	107.0	0.0	.	109	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13239672	13239672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MCM10	NM_182751	exon15	c.C2027T	p.T676I	CAAAAACAAACCC	.	151.0	16.0	81.0	0.0	.	76	.	.	Atlas-SNP
MASTL	84930	hgsc.bcm.edu	hg19	10	27459955	27459955	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MASTL	NM_032844	exon8	c.T2067G	p.G689G	CAGTGGTTCATAT	.	332.0	20.0	115.0	0.0	.	81	.	.	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	hg19	10	52008360	52008360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ASAH2	NM_019893	exon1	c.G11A	p.R4H	AAGGTGCGTTTGG	.	162.0	7.0	63.0	0.0	.	69	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61835056	61835056	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ANK3	NM_020987	exon37	c.G5583A	p.T1861T	TGTCTCCGTAGTC	.	175.0	57.0	90.0	0.0	.	703	.	.	Atlas-SNP
EGR2	1959	hgsc.bcm.edu	hg19	10	64573581	64573581	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EGR2	NM_000399	exon2	c.C817T	p.L273L	CCCCCAGGGTAAA	.	50.0	22.0	31.0	0.0	.	77	.	.	Atlas-SNP
WAPAL	23063	hgsc.bcm.edu	hg19	10	88206050	88206050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WAPAL	NM_015045	exon16	c.G3271A	p.E1091K	TCTCTTCTGTACC	.	253.0	43.0	107.0	0.0	.	81	.	.	Atlas-SNP
HTR7	3363	hgsc.bcm.edu	hg19	10	92508782	92508782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HTR7	NM_019860	exon2	c.T1109A	p.L370Q	AGCCACAGAAATG	.	119.0	22.0	52.0	0.0	.	122	.	.	Atlas-SNP
HTR7	3363	hgsc.bcm.edu	hg19	10	92508894	92508894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HTR7	NM_019860	exon2	c.G997A	p.V333I	CCCCGACGATGAT	.	162.0	11.0	83.0	0.0	.	122	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94225544	94225544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IDE	NM_004969	exon20	c.A2377G	p.I793V	AGTATATCTCGAT	.	345.0	19.0	116.0	0.0	.	77	.	.	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98742351	98742351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C10orf12	NM_015652	exon1	c.A1204G	p.M402V	TCCCCAATGGGCT	.	42.0	15.0	26.0	0.0	.	94	.	.	Atlas-SNP
AVPI1	60370	hgsc.bcm.edu	hg19	10	99437748	99437748	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AVPI1	NM_021732	exon3	c.C322G	p.Q108E	CACTCTGTGGGTT	.	97.0	42.0	50.0	0.0	.	16	.	.	Atlas-SNP
CPN1	1369	hgsc.bcm.edu	hg19	10	101802222	101802222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CPN1	NM_001308	exon9	c.G1339A	p.E447K	CCATTTCTTTCTT	.	171.0	26.0	80.0	0.0	.	62	.	.	Atlas-SNP
CNNM2	54805	hgsc.bcm.edu	hg19	10	104679587	104679587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CNNM2	NM_199076	exon1	c.G1350A	p.M450I	CGTGATGACCCCA	.	66.0	31.0	24.0	0.0	.	119	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106959776	106959776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SORCS3	NM_014978	exon15	c.C2029T	p.L677F	TTCAGCCTCCGCT	.	147.0	7.0	65.0	0.0	.	282	.	.	Atlas-SNP
DCLRE1A	9937	hgsc.bcm.edu	hg19	10	115609989	115609989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DCLRE1A	NM_014881	exon2	c.A875G	p.D292G	CTGAAGTCATTTT	.	143.0	7.0	60.0	0.0	.	80	.	.	Atlas-SNP
KCNK18	338567	hgsc.bcm.edu	hg19	10	118960672	118960672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCNK18	NM_181840	exon2	c.G226A	p.V76M	CCAGTGGTGGAAG	.	42.0	4.0	28.0	0.0	.	70	.	.	Atlas-SNP
CHST15	51363	hgsc.bcm.edu	hg19	10	125769678	125769678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CHST15	NM_015892	exon8	c.G1673A	p.W558X	GTCTTCCACGCAA	.	84.0	14.0	33.0	0.0	.	134	.	.	Atlas-SNP
DOCK1	1793	hgsc.bcm.edu	hg19	10	128840966	128840966	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DOCK1	NM_001380	exon20	c.C2025A	p.V675V	GTTAGTCTTTGAT	.	139.0	18.0	83.0	0.0	.	188	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	hg19	11	281055	281055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NLRP6	NM_138329	exon4	c.G1321C	p.D441H	CAGGGCGACCTGC	.	61.0	7.0	27.0	0.0	.	4	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6643329	6643329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DCHS1	NM_003737	exon21	c.G9578T	p.C3193F	GGGGGACATGGCC	.	95.0	19.0	38.0	0.0	.	277	.	.	Atlas-SNP
OR10A3	26496	hgsc.bcm.edu	hg19	11	7960259	7960259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR10A3	NM_001003745	exon1	c.C809G	p.T270S	TTCTTGGTTTCGG	.	370.0	33.0	117.0	0.0	.	54	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8662311	8662311	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRIM66	NM_014818	exon9	c.C1176A	p.P392P	CTCCACGGGGGGC	.	86.0	7.0	28.0	0.0	.	45	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8662439	8662439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRIM66	NM_014818	exon9	c.C1048A	p.P350T	CAGGGGGCTGCCT	.	110.0	15.0	32.0	0.0	.	45	.	.	Atlas-SNP
DENND5A	23258	hgsc.bcm.edu	hg19	11	9202573	9202573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DENND5A	NM_015213	exon6	c.C1196A	p.P399Q	AACTGTGGCAAGT	.	211.0	17.0	74.0	0.0	.	84	.	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	hg19	11	30937205	30937205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DCDC5	NM_020869	exon8	c.A827G	p.Y276C	TCTCTGTATTCGA	.	226.0	19.0	106.0	0.0	.	137	.	.	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45246096	45246096	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PRDM11	NM_001256695	exon7	c.C1071T	p.G357G	TATAGGCCAGACC	.	58.0	6.0	25.0	0.0	.	53	.	.	Atlas-SNP
OR4C46	119749	hgsc.bcm.edu	hg19	11	51516034	51516034	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR4C46	NM_001004703	exon1	c.C753T	p.P251P	TGTGCCCTGCATA	.	206.0	68.0	129.0	0.0	.	96	.	.	Atlas-SNP
OR4C16	219428	hgsc.bcm.edu	hg19	11	55339975	55339975	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR4C16	NM_001004701	exon1	c.C372A	p.I124I	GGACATCTGTAAG	.	110.0	50.0	71.0	0.0	.	104	.	.	Atlas-SNP
OR5AS1	219447	hgsc.bcm.edu	hg19	11	55798784	55798784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR5AS1	NM_001001921	exon1	c.T890A	p.V297E	AGGATGTGAAAAA	.	37.0	11.0	21.0	0.0	.	121	.	.	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	hg19	11	62491884	62491884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HNRNPUL2	NM_001079559	exon2	c.A553C	p.S185R	TTTCACTATCCTG	.	243.0	43.0	103.0	0.0	.	41	.	.	Atlas-SNP
ATL3	25923	hgsc.bcm.edu	hg19	11	63396832	63396832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATL3	NM_015459	exon13	c.G1585T	p.A529S	CAACTGCATCCCT	.	255.0	35.0	97.0	0.0	.	31	.	.	Atlas-SNP
ESRRA	2101	hgsc.bcm.edu	hg19	11	64082291	64082291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ESRRA	NM_004451	exon5	c.G650T	p.G217V	CCGCAGGCCCTGA	.	74.0	8.0	33.0	0.0	.	56	.	.	Atlas-SNP
VPS51	738	hgsc.bcm.edu	hg19	11	64878964	64878964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_013265	exon10	c.C2254G	p.L752V	CACTTGCTGCTGG	.	202.0	24.0	64.0	0.0	.	.	.	.	Atlas-SNP
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67957441	67957441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SUV420H1	NM_017635	exon2	c.A103T	p.T35S	TCCCCGTGTGCTG	.	316.0	21.0	144.0	0.0	.	125	.	.	Atlas-SNP
LRTOMT	220074	hgsc.bcm.edu	hg19	11	71819726	71819726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LRTOMT	NM_001145309	exon9	c.C631A	p.L211M	GCAGACCTGGTGC	.	56.0	4.0	17.0	0.0	.	20	.	.	Atlas-SNP
PLEKHB1	58473	hgsc.bcm.edu	hg19	11	73372585	73372585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLEKHB1	NM_021200	exon8	c.C670T	p.L224F	GGCATGCTTGCGG	.	66.0	14.0	13.0	0.0	.	16	.	.	Atlas-SNP
RPS3	6188	hgsc.bcm.edu	hg19	11	75110602	75110602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RPS3	NM_001256802	exon1	c.A11G	p.Q4R	CAGTGCAAATATC	.	157.0	9.0	42.0	0.0	.	20	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76858899	76858899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MYO7A	NM_001127179	exon4	c.C188G	p.S63W	CCACGTCGGTCCA	.	128.0	15.0	27.0	0.0	.	164	.	.	Atlas-SNP
GDPD4	220032	hgsc.bcm.edu	hg19	11	76969478	76969478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GDPD4	NM_182833	exon10	c.G817A	p.D273N	GGAAATCCCAGTT	.	277.0	25.0	101.0	0.0	.	49	.	.	Atlas-SNP
KBTBD3	143879	hgsc.bcm.edu	hg19	11	105925003	105925003	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KBTBD3	NM_152433	exon3	c.C413G	p.S138C	GCTTTGGATAGGA	.	232.0	11.0	105.0	0.0	.	59	.	.	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120317715	120317715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARHGEF12	NM_015313	exon18	c.G1510C	p.E504Q	GATGCAGAGCGAG	.	206.0	20.0	73.0	0.0	.	133	.	.	Atlas-SNP
SCN3B	55800	hgsc.bcm.edu	hg19	11	123513234	123513234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SCN3B	NM_018400	exon3	c.T365A	p.V122E	CGGGACACATTGC	.	128.0	11.0	46.0	0.0	.	53	.	.	Atlas-SNP
OR8B2	26595	hgsc.bcm.edu	hg19	11	124252995	124252995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR8B2	NM_001005468	exon1	c.T245G	p.L82R	TTCATTAGCATTT	.	276.0	13.0	107.0	0.0	.	42	.	.	Atlas-SNP
OR8B8	26493	hgsc.bcm.edu	hg19	11	124310110	124310110	+	Missense_Mutation	SNP	C	C	T	rs147220624	bycluster;by1000genomes;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR8B8	NM_012378	exon1	c.G872A	p.S291N	CTCAGGCTATAAA	.	119.0	10.0	49.0	0.0	.	76	.	C|0.999;A|0.001	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	668557	668557	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	B4GALNT3	NM_173593	exon19	c.G2858A	p.W953X	ACCGCTGGGGCGG	.	102.0	11.0	45.0	0.0	.	64	.	.	Atlas-SNP
NRIP2	83714	hgsc.bcm.edu	hg19	12	2944113	2944113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NRIP2	NM_031474	exon1	c.C37T	p.P13S	AGGAGGGTCTCCA	.	137.0	10.0	60.0	0.0	.	21	.	.	Atlas-SNP
FGF6	2251	hgsc.bcm.edu	hg19	12	4553334	4553334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	FGF6,NS,carcinoma,0,1	FGF6	NM_020996	exon2	c.G415A	p.V139I	TGGCAACGAAGAG	.	215.0	24.0	43.0	0.0	.	40	.	.	Atlas-SNP
VAMP1	6843	hgsc.bcm.edu	hg19	12	6575091	6575091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	VAMP1	NM_014231	exon3	c.G205C	p.A69P	CATCAGCTCGGTC	.	157.0	16.0	71.0	0.0	.	6	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7045220	7045220	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATN1	NM_001007026	exon5	c.A790T	p.S264C	GTATCAAGCTCTG	.	30.0	12.0	20.0	0.0	.	95	.	.	Atlas-SNP
SLC2A3	6515	hgsc.bcm.edu	hg19	12	8086448	8086448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC2A3	NM_006931	exon2	c.C66A	p.F22L	AAATTGGAAAGAG	.	159.0	12.0	71.0	0.0	.	83	.	.	Atlas-SNP
CLEC4E	26253	hgsc.bcm.edu	hg19	12	8692481	8692481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CLEC4E	NM_014358	exon2	c.C100T	p.L34F	CACTGAGAAATAG	.	123.0	24.0	44.0	0.0	.	30	.	.	Atlas-SNP
CDKN1B	1027	hgsc.bcm.edu	hg19	12	12871889	12871889	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDKN1B	NM_004064	exon2	c.605+1G>A	.	AGCTCGGTGGGTT	.	46.0	8.0	16.0	0.0	.	48	.	.	Atlas-SNP
SMCO3	0	hgsc.bcm.edu	hg19	12	14959587	14959587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_001013698	exon2	c.G28C	p.E10Q	GGTTCTCTGGGTA	.	122.0	11.0	70.0	0.0	.	.	.	.	Atlas-SNP
RECQL	5965	hgsc.bcm.edu	hg19	12	21643210	21643210	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RECQL	NM_032941	exon5	c.G317C	p.G106A	TCCTTTCCAGCCA	.	171.0	30.0	95.0	0.0	.	45	.	.	Atlas-SNP
TENC1	23371	hgsc.bcm.edu	hg19	12	53446269	53446269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TENC1	NM_015319	exon3	c.A245T	p.E82V	AATGTGAAGCAAA	.	173.0	24.0	64.0	0.0	.	148	.	.	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	hg19	12	54447739	54447739	+	Missense_Mutation	SNP	C	C	A	rs377491433	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HOXC4	NM_014620	exon3	c.C33A	p.N11K	CTCTAACTACATC	.	135.0	14.0	38.0	0.0	.	29	.	.	Atlas-SNP
HOXC4	3221	hgsc.bcm.edu	hg19	12	54447841	54447841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HOXC4	NM_014620	exon3	c.C135A	p.F45L	GGGATTCCAGCAT	.	100.0	9.0	49.0	0.0	.	29	.	.	Atlas-SNP
OR6C74	254783	hgsc.bcm.edu	hg19	12	55641327	55641327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR6C74	NM_001005490	exon1	c.G256A	p.G86S	GCAACAGGTGATA	.	284.0	30.0	92.0	0.0	.	52	.	.	Atlas-SNP
OR6C75	390323	hgsc.bcm.edu	hg19	12	55759521	55759521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR6C75	NM_001005497	exon1	c.G627T	p.L209F	CACCTTGACATTA	.	371.0	16.0	141.0	0.0	.	67	.	.	Atlas-SNP
CNPY2	10330	hgsc.bcm.edu	hg19	12	56708752	56708752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CNPY2	NM_014255	exon4	c.89-2A>G	.	GCATGCTGGTGGA	.	144.0	15.0	55.0	0.0	.	16	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56993854	56993854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	BAZ2A_ENST00000551812,colon,carcinoma,0,2	BAZ2A	NM_013449	exon25	c.G4925T	p.R1642L	CAGACACGAATGC	.	198.0	20.0	55.0	0.0	.	263	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57571304	57571304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LRP1	NM_002332	exon26	c.G4291T	p.G1431C	GAGACCGGCTCTG	.	130.0	19.0	45.0	0.0	.	428	.	.	Atlas-SNP
TBK1	29110	hgsc.bcm.edu	hg19	12	64882345	64882345	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TBK1	NM_013254	exon12	c.A1419G	p.R473R	TATCAGAAACATT	.	298.0	116.0	116.0	0.0	.	149	.	.	Atlas-SNP
WIF1	11197	hgsc.bcm.edu	hg19	12	65448938	65448938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WIF1	NM_007191	exon9	c.C978G	p.C326W	ACATTGGCATTTG	.	98.0	7.0	69.0	0.0	.	96	.	.	Atlas-SNP
OSBPL8	114882	hgsc.bcm.edu	hg19	12	76752567	76752567	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OSBPL8	NM_020841	exon22	c.A2353T	p.K785X	TTGGCTTATGTTT	.	219.0	80.0	133.0	0.0	.	86	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	81004359	81004359	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PTPRQ	NM_001145026	exon25	c.G4357C	p.E1453Q	TATGTAGAAGGGA	.	156.0	13.0	52.0	0.0	.	119	.	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	81746949	81746949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PPFIA2	NM_001220476	exon16	c.C1943A	p.T648K	GCTAGCGTCTGGG	.	163.0	7.0	85.0	0.0	.	207	.	.	Atlas-SNP
ALX1	8092	hgsc.bcm.edu	hg19	12	85674229	85674229	+	Missense_Mutation	SNP	C	C	A	rs145944049	bycluster;byfrequency;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ALX1	NM_006982	exon1	c.C190A	p.R64S	CACGTGCGCTTGG	.	45.0	24.0	20.0	0.0	.	61	.	C|0.997;T|0.003	Atlas-SNP
FGD6	55785	hgsc.bcm.edu	hg19	12	95603522	95603522	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FGD6	NM_018351	exon2	c.C1538G	p.A513G	GAGGCAGCCTTTT	.	184.0	8.0	79.0	0.0	.	127	.	.	Atlas-SNP
TMPO	7112	hgsc.bcm.edu	hg19	12	98938066	98938066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMPO	NM_001032283	exon5	c.G722A	p.G241E	AAGGCGGACCTCT	.	261.0	34.0	92.0	0.0	.	111	.	.	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	hg19	12	105464456	105464456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ALDH1L2	NM_001034173	exon3	c.T320C	p.F107S	GTGCAGAAAGGGA	.	208.0	15.0	99.0	0.0	.	71	.	.	Atlas-SNP
BRAP	8315	hgsc.bcm.edu	hg19	12	112093435	112093435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	BRAP	NM_006768	exon10	c.C1246G	p.L416V	ATTCCAGCTGGCT	.	124.0	12.0	75.0	0.0	.	42	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116429410	116429410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MED13L	NM_015335	exon17	c.G3349A	p.D1117N	CGGAATCGGAGAG	.	209.0	21.0	47.0	0.0	.	193	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124305198	124305198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH10	NM_207437	exon23	c.G3718T	p.A1240S	GCTAACGCTGAGA	.	174.0	14.0	81.0	0.0	.	888	.	.	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	hg19	12	125453127	125453127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DHX37	NM_032656	exon10	c.G1361T	p.G454V	CACTCGCCACTGT	.	57.0	7.0	15.0	0.0	.	114	.	.	Atlas-SNP
ZNF10	7556	hgsc.bcm.edu	hg19	12	133733009	133733009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF10	NM_015394	exon5	c.A1177G	p.I393V	CATCTCATTCTGC	.	184.0	13.0	80.0	0.0	.	58	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35731313	35731313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NBEA	NM_015678	exon21	c.A2750G	p.Y917C	TGGTCTACAATAT	.	193.0	34.0	101.0	0.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35756573	35756573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	NBEA,NS,carcinoma,0,1	NBEA	NM_015678	exon29	c.G4739A	p.R1580H	AGTATCGTGACAT	.	262.0	25.0	120.0	0.0	.	340	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	hg19	13	36050193	36050193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MAB21L1	NM_005584	exon1	c.C83A	p.A28D	GTTTTGGCAATGG	.	119.0	14.0	51.0	0.0	.	52	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39265055	39265055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FREM2	NM_207361	exon1	c.G3574T	p.E1192X	CAGCCAGAGATGT	.	313.0	40.0	128.0	0.0	.	385	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39265478	39265478	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	FREM2,rectum,carcinoma,0,1	FREM2	NM_207361	exon1	c.G3997C	p.D1333H	GATTTAGATTCAG	.	188.0	28.0	41.0	0.0	.	385	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42877120	42877120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AKAP11	NM_016248	exon8	c.C4238A	p.S1413X	TGTTTTCAAACAA	.	76.0	7.0	39.0	0.0	.	146	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58207559	58207559	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PCDH17	NM_001040429	exon1	c.C879T	p.L293L	GGAGCTCTTCTCC	.	89.0	10.0	47.0	0.0	.	304	.	.	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	hg19	13	111082761	111082761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL4A2	NM_001846	exon9	c.A563G	p.E188G	CTGGAGAGCCTGG	.	187.0	8.0	62.0	0.0	.	178	.	.	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	hg19	13	111117937	111117937	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL4A2	NM_001846	exon25	c.G1962A	p.G654G	CGCAGGGACCCCA	.	66.0	25.0	28.0	0.0	.	178	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20897958	20897958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KLHL33	NM_001109997	exon2	c.C877A	p.L293I	ACCTGAGAGTTGA	.	100.0	8.0	32.0	0.0	.	37	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23866803	23866803	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MYH6	NM_002471	exon16	c.A1911T	p.K637N	GCCTCCTTTGCTT	.	110.0	15.0	39.0	0.0	.	274	.	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	hg19	14	26917704	26917704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NOVA1	NM_002515	exon5	c.C985A	p.L329I	TGTTGAGATTATA	.	78.0	8.0	26.0	0.0	.	146	.	.	Atlas-SNP
MAP4K5	11183	hgsc.bcm.edu	hg19	14	50915494	50915494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MAP4K5	NM_006575	exon15	c.A1072G	p.M358V	TTACCATTTCATC	.	141.0	23.0	67.0	0.0	.	48	.	.	Atlas-SNP
TMEM260	0	hgsc.bcm.edu	hg19	14	57070549	57070549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_017799	exon4	c.G361A	p.A121T	TCATCTGCTGGAG	.	303.0	24.0	135.0	0.0	.	.	.	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	hg19	14	59820665	59820665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DAAM1	NM_014992	exon19	c.T2369A	p.V790E	CAGAAGTGAAACC	.	157.0	11.0	71.0	0.0	.	95	.	.	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	hg19	14	60921835	60921835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C14orf39	NM_174978	exon16	c.G1387C	p.V463L	TTTGAACTTCAGG	.	280.0	16.0	110.0	0.0	.	79	.	.	Atlas-SNP
PRKCH	5583	hgsc.bcm.edu	hg19	14	61997206	61997206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	PRKCH,colon,carcinoma,-1,1	PRKCH	NM_006255	exon12	c.G1654T	p.A552S	GGTCACGCGCCTT	.	137.0	8.0	73.0	0.0	.	89	.	.	Atlas-SNP
HIF1A	3091	hgsc.bcm.edu	hg19	14	62207716	62207716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HIF1A	NM_001243084	exon12	c.A1975T	p.I659F	GAAGACATTAAAA	.	158.0	62.0	71.0	0.0	.	120	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64518635	64518635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SYNE2	NM_182914	exon48	c.G8004T	p.L2668F	TGCCTTGACCACT	.	225.0	31.0	102.0	0.0	.	577	.	.	Atlas-SNP
SLC10A1	6554	hgsc.bcm.edu	hg19	14	70252897	70252897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC10A1	NM_003049	exon2	c.T484C	p.S162P	CCAGTGATATCAC	.	225.0	17.0	101.0	0.0	.	32	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72190408	72190408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SIPA1L1	NM_015556	exon16	c.G4316A	p.S1439N	TCACCAGTGCCCG	.	122.0	19.0	50.0	0.0	.	219	.	.	Atlas-SNP
DPF3	8110	hgsc.bcm.edu	hg19	14	73159816	73159816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DPF3	NM_012074	exon7	c.C710T	p.S237F	GGTGGGGACCGAG	.	300.0	31.0	143.0	0.0	.	117	.	.	Atlas-SNP
GPATCH2L	55668	hgsc.bcm.edu	hg19	14	76668083	76668083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_017926	exon10	c.A1338G	p.K446K	CCCCAAATCACCC	.	191.0	13.0	94.0	0.0	.	.	.	.	Atlas-SNP
ZDHHC22	283576	hgsc.bcm.edu	hg19	14	77606003	77606003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZDHHC22	NM_174976	exon2	c.C79T	p.L27F	GGAAGAGCTGCAG	.	54.0	10.0	27.0	0.0	.	30	.	.	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91338575	91338575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RPS6KA5	NM_004755	exon17	c.C2252G	p.T751S	GTACTGGTGCTAG	.	335.0	37.0	113.0	0.0	.	135	.	.	Atlas-SNP
RCOR1	23186	hgsc.bcm.edu	hg19	14	103174914	103174914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RCOR1	NM_015156	exon6	c.A773G	p.E258G	AGCGGGAGGAGAG	.	85.0	10.0	39.0	0.0	.	39	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105419292	105419292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AHNAK2	NM_138420	exon7	c.G2496T	p.K832N	TTTGAACTTGCTG	.	169.0	67.0	94.0	0.0	.	719	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28446674	28446674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HERC2	NM_004667	exon48	c.C7644G	p.S2548R	CGTCTGGCTCTCC	.	537.0	24.0	122.0	0.0	.	501	.	.	Atlas-SNP
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32928928	32928928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARHGAP11A	NM_014783	exon12	c.G1954A	p.V652I	ACTATAGTAGAAT	.	204.0	92.0	78.0	0.0	.	84	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35198872	35198872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AQR	NM_014691	exon18	c.C1705A	p.P569T	TTGTGGGACGTAC	.	139.0	13.0	49.0	0.0	.	139	.	.	Atlas-SNP
BAHD1	22893	hgsc.bcm.edu	hg19	15	40757537	40757537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	BAHD1	NM_014952	exon6	c.T2056A	p.L686M	GAGCCCTTGCAGA	.	119.0	13.0	70.0	0.0	.	68	.	.	Atlas-SNP
TGM7	116179	hgsc.bcm.edu	hg19	15	43571883	43571883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGM7	NM_052955	exon10	c.G1618A	p.G540S	TACCACCCCCATG	.	101.0	14.0	32.0	0.0	.	86	.	.	Atlas-SNP
TP53BP1	7158	hgsc.bcm.edu	hg19	15	43749109	43749109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TP53BP1	NM_001141980	exon12	c.C1697G	p.P566R	TCAGCAGGAACAA	.	156.0	7.0	88.0	0.0	.	157	.	.	Atlas-SNP
DUOXA2	405753	hgsc.bcm.edu	hg19	15	45408389	45408389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DUOXA2	NM_207581	exon3	c.C273A	p.S91R	CTTCAGCGCAGCG	.	112.0	13.0	36.0	0.0	.	38	.	.	Atlas-SNP
BLOC1S6	26258	hgsc.bcm.edu	hg19	15	45884374	45884374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_012388	exon2	c.T124A	p.L42M	GAGGACTTGACTA	.	133.0	7.0	53.0	0.0	.	.	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48063289	48063289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SEMA6D	NM_153618	exon19	c.C2529A	p.N843K	CTCAAACTCCAAT	.	210.0	10.0	69.0	0.0	.	322	.	.	Atlas-SNP
SHC4	399694	hgsc.bcm.edu	hg19	15	49148299	49148299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SHC4	NM_203349	exon8	c.C1093T	p.H365Y	CGGCATGGCTATC	.	159.0	10.0	79.0	0.0	.	70	.	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51791589	51791589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DMXL2	NM_001174116	exon18	c.G3832C	p.V1278L	ATTTGACAGCATG	.	171.0	17.0	75.0	0.0	.	262	.	.	Atlas-SNP
LEO1	123169	hgsc.bcm.edu	hg19	15	52251010	52251010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LEO1	NM_138792	exon6	c.C1174A	p.Q392K	AATACTGAGGATC	.	317.0	17.0	99.0	0.0	.	46	.	.	Atlas-SNP
LEO1	123169	hgsc.bcm.edu	hg19	15	52258056	52258056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LEO1	NM_138792	exon2	c.C704G	p.P235R	AGCTGTGGTTGTT	.	477.0	35.0	148.0	0.0	.	46	.	.	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	hg19	15	52476791	52476791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GNB5	NM_016194	exon2	c.A83T	p.K28M	GACTTCTTGAAAA	.	112.0	10.0	60.0	0.0	.	28	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54592572	54592572	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	UNC13C	NM_001080534	exon11	c.4268+1G>A	.	TATGACGTAAGTA	.	104.0	6.0	66.0	0.0	.	674	.	.	Atlas-SNP
STOML1	9399	hgsc.bcm.edu	hg19	15	74277722	74277722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STOML1	NM_001256672	exon5	c.G727T	p.A243S	GCAGGGCCAGCTG	.	104.0	15.0	50.0	0.0	.	22	.	.	Atlas-SNP
RCN2	5955	hgsc.bcm.edu	hg19	15	77227917	77227917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RCN2	NM_002902	exon3	c.G301A	p.E101K	ATGCAAGAAGCAA	.	176.0	15.0	49.0	0.0	.	16	.	.	Atlas-SNP
RCN2	5955	hgsc.bcm.edu	hg19	15	77241537	77241537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RCN2	NM_001271837	exon8	c.G982T	p.D328Y	CATGATGACTATT	.	77.0	4.0	41.0	0.0	.	16	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77425574	77425574	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_024776	exon7	c.G3850T	p.E1284X	CTTCCTCCCGATT	.	321.0	33.0	100.0	0.0	.	.	.	.	Atlas-SNP
LINGO1	84894	hgsc.bcm.edu	hg19	15	77906599	77906599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LINGO1	NM_032808	exon2	c.C1650A	p.F550L	GAAGGGGAAAGGC	.	77.0	30.0	59.0	0.0	.	76	.	.	Atlas-SNP
ARNT2	9915	hgsc.bcm.edu	hg19	15	80767490	80767490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARNT2	NM_014862	exon5	c.T548G	p.L183R	GCACACTGTATGA	.	162.0	31.0	69.0	0.0	.	88	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81589305	81589305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IL16	NM_001172128	exon13	c.G1939A	p.E647K	CCACAGGAAGACA	.	195.0	33.0	41.0	0.0	.	254	.	.	Atlas-SNP
STARD5	80765	hgsc.bcm.edu	hg19	15	81615246	81615246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STARD5	NM_181900	exon2	c.G143T	p.G48V	AGGTTCCCTGGAA	.	154.0	14.0	68.0	0.0	.	20	.	.	Atlas-SNP
RHCG	51458	hgsc.bcm.edu	hg19	15	90023512	90023512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RHCG	NM_016321	exon4	c.C650A	p.S217X	AGGTCCGACTGGT	.	88.0	7.0	68.0	0.0	.	49	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94901714	94901714	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	MCTP2,NS,carcinoma,0,1	MCTP2	NM_001159643	exon9	c.C1174T	p.L392L	TAGACACTGTGTA	.	104.0	0.0	36.0	0.0	.	122	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94901825	94901825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MCTP2	NM_001159643	exon9	c.G1285C	p.E429Q	AAGCATGAGGAAC	.	140.0	20.0	49.0	0.0	.	122	.	.	Atlas-SNP
FAM169B	283777	hgsc.bcm.edu	hg19	15	99023985	99023985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FAM169B	NM_182562	exon4	c.G28C	p.V10L	GCACAACCCTTTC	.	116.0	8.0	59.0	0.0	.	23	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101550657	101550657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LRRK1	NM_024652	exon8	c.T992C	p.L331P	GCAGGCTACTTGA	.	198.0	71.0	104.0	0.0	.	310	.	.	Atlas-SNP
MAPK8IP3	23162	hgsc.bcm.edu	hg19	16	1816311	1816311	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MAPK8IP3	NM_015133	exon22	c.C2717G	p.P906R	CTGGGCCCAGCGA	.	88.0	18.0	41.0	0.0	.	164	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2098719	2098719	+	Nonsense_Mutation	SNP	C	C	T	rs137854105		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TSC2	NM_001114382	exon2	c.C103T	p.Q35X	GGTAAACAGACGG	.	184.0	10.0	78.0	0.0	.	364	.	.	Atlas-SNP
RSL1D1	26156	hgsc.bcm.edu	hg19	16	11944139	11944139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RSL1D1	NM_015659	exon2	c.G242T	p.R81I	TACAATCTGACCC	.	63.0	31.0	53.0	0.0	.	40	.	.	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	hg19	16	19049310	19049310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMC7	NM_024847	exon8	c.G1120T	p.G374W	GTTTTAGGGGCAT	.	283.0	41.0	120.0	0.0	.	75	.	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	hg19	16	23489767	23489767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GGA2	NM_015044	exon13	c.C1214T	p.P405L	CCGCCTGGCAGCG	.	158.0	18.0	63.0	0.0	.	49	.	.	Atlas-SNP
IL21R	50615	hgsc.bcm.edu	hg19	16	27448870	27448870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IL21R	NM_181079	exon5	c.C280A	p.H94N	TCGGCCCACAATG	.	80.0	9.0	32.0	0.0	.	95	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27517278	27517278	+	Missense_Mutation	SNP	G	G	T	rs140459536	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GTF3C1	NM_001520	exon10	c.C1712A	p.A571E	CTGTCCGCACAGT	.	148.0	19.0	58.0	0.0	.	210	.	G|1.000;A|0.000	Atlas-SNP
CD19	930	hgsc.bcm.edu	hg19	16	28946809	28946809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CD19	NM_001178098	exon5	c.G880A	p.A294T	GTCTCAGCTGTGA	.	304.0	21.0	152.0	0.0	.	65	.	.	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30977205	30977205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SETD1A	NM_014712	exon8	c.G2003T	p.R668L	TGGACCGACTTGG	.	191.0	25.0	90.0	0.0	.	143	.	.	Atlas-SNP
ZNF668	79759	hgsc.bcm.edu	hg19	16	31072640	31072640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF668	NM_001172669	exon4	c.T1678A	p.S560T	GGTGTGAGCGCTC	.	113.0	9.0	45.0	0.0	.	121	.	.	Atlas-SNP
DNAJA2	10294	hgsc.bcm.edu	hg19	16	46991020	46991020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAJA2	NM_005880	exon9	c.G1160T	p.R387M	TCACGCCTCTGAC	.	166.0	12.0	69.0	0.0	.	28	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53358701	53358701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CHD9	NM_025134	exon39	c.T8540G	p.L2847R	GTCCTCTCAATGA	.	188.0	59.0	97.0	0.0	.	203	.	.	Atlas-SNP
SLC38A7	55238	hgsc.bcm.edu	hg19	16	58706093	58706093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC38A7	NM_018231	exon9	c.C938A	p.S313Y	GGATAGGACAGGA	.	193.0	25.0	53.0	0.0	.	26	.	.	Atlas-SNP
CES4A	283848	hgsc.bcm.edu	hg19	16	67029593	67029593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CES4A	NM_173815	exon2	c.A121G	p.M41V	AAACAGATGCATG	.	95.0	4.0	58.0	0.0	.	24	.	.	Atlas-SNP
CES4A	283848	hgsc.bcm.edu	hg19	16	67038121	67038121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CES4A	NM_173815	exon9	c.G1074T	p.L358F	GCTCTTGCCTTAT	.	166.0	10.0	70.0	0.0	.	24	.	.	Atlas-SNP
ZDHHC1	29800	hgsc.bcm.edu	hg19	16	67432171	67432171	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZDHHC1	NM_013304	exon8	c.G871C	p.A291P	CCTTGGCCTCCTG	.	125.0	23.0	57.0	0.0	.	28	.	.	Atlas-SNP
CDH1	999	hgsc.bcm.edu	hg19	16	68856129	68856129	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	CDH1,NS,carcinoma,0,2	CDH1	NM_004360	exon12	c.1936+1G>A	.	ACCCAAGTGGGTA	.	100.0	4.0	46.0	0.0	.	535	.	.	Atlas-SNP
AP1G1	164	hgsc.bcm.edu	hg19	16	71823203	71823203	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AP1G1	NM_001030007	exon2	c.C180T	p.G60G	AGGGTAGCCCAGC	.	147.0	19.0	64.0	0.0	.	83	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72984568	72984568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZFHX3	NM_006885	exon3	c.G3016C	p.D1006H	GCTTGTCTGTCTT	.	133.0	52.0	88.0	0.0	.	404	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84229967	84229967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ADAD2	NM_139174	exon9	c.T1763A	p.V588E	GGCGTGTGAAGGC	.	90.0	30.0	36.0	0.0	.	46	.	.	Atlas-SNP
SPNS2	124976	hgsc.bcm.edu	hg19	17	4416595	4416595	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPNS2	NM_001124758	exon2	c.C424T	p.L142L	GCCGGCCTGCTGC	.	77.0	4.0	38.0	0.0	.	24	.	.	Atlas-SNP
DLG4	1742	hgsc.bcm.edu	hg19	17	7097812	7097812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DLG4	NM_001365	exon14	c.C1433T	p.A478V	AACAGGGCCCTGG	.	74.0	11.0	25.0	0.0	.	110	.	.	Atlas-SNP
GPS2	2874	hgsc.bcm.edu	hg19	17	7216697	7216697	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GPS2	NM_004489	exon9	c.724+2T>C	.	GTTATCACCTGTC	.	106.0	12.0	38.0	0.0	.	44	.	.	Atlas-SNP
TMEM102	284114	hgsc.bcm.edu	hg19	17	7339378	7339378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMEM102	NM_178518	exon2	c.C188T	p.A63V	TCCGGGCCAAGGA	.	199.0	32.0	46.0	0.0	.	11	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577107	7577107	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	TP53_ENST00000455263,NS,carcinoma,-1,2	TP53	NM_000546	exon8	c.T831A	p.C277X	CCCAGGACAGGCA	.	67.0	10.0	35.0	0.0	.	33396	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	188.0	23.0	64.0	0.0	.	33396	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578449	7578449	+	Missense_Mutation	SNP	C	C	A	rs193920817	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	TP53_ENST00000545858,NS,lymphoid_neoplasm,0,1	TP53	NM_000546	exon5	c.G481T	p.A161S	AGATGGCCATGGC	.	108.0	14.0	37.0	0.0	.	33396	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7734001	7734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH2	NM_020877	exon78	c.A12071G	p.Y4024C	GCCTCTATCTCGA	.	161.0	19.0	64.0	0.0	.	498	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11775087	11775087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH9	NM_001372	exon52	c.A10226T	p.Y3409F	GGCCCTACCTGAG	.	154.0	33.0	58.0	0.0	.	695	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11786904	11786904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH9	NM_001372	exon56	c.C10808A	p.S3603Y	TGCAGTCCGATCT	.	116.0	11.0	44.0	0.0	.	695	.	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	hg19	17	12819314	12819314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARHGAP44	NM_014859	exon5	c.T373A	p.F125I	CCCCTGTTTTTGC	.	194.0	25.0	65.0	0.0	.	55	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319098	21319098	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_001194958	exon3	c.G444T	p.L148L	CGGGCTGCGCTGT	.	148.0	27.0	41.0	0.0	.	.	.	.	Atlas-SNP
FOXN1	8456	hgsc.bcm.edu	hg19	17	26851109	26851109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FOXN1	NM_003593	exon1	c.G122T	p.S41I	CACAGAGTGTAAG	.	115.0	16.0	38.0	0.0	.	51	.	.	Atlas-SNP
PHF12	57649	hgsc.bcm.edu	hg19	17	27251239	27251239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PHF12	NM_020889	exon4	c.G403T	p.D135Y	CAGTGTCACTGCT	.	145.0	6.0	72.0	0.0	.	69	.	.	Atlas-SNP
TMEM132E	124842	hgsc.bcm.edu	hg19	17	32956067	32956067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TMEM132E	NM_207313	exon5	c.C912A	p.D304E	GCTGGACTTTGAA	.	190.0	9.0	55.0	0.0	.	122	.	.	Atlas-SNP
NLE1	54475	hgsc.bcm.edu	hg19	17	33469091	33469091	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NLE1	NM_018096	exon2	c.T69C	p.D23D	GCCCTCATCCTGG	.	54.0	16.0	36.0	0.0	.	42	.	.	Atlas-SNP
KRTAP3-3	85293	hgsc.bcm.edu	hg19	17	39150290	39150290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KRTAP3-3	NM_033185	exon1	c.C60A	p.C20X	AGAGGAGCAGATG	.	183.0	9.0	50.0	0.0	.	11	.	.	Atlas-SNP
ATP6V0A1	535	hgsc.bcm.edu	hg19	17	40652840	40652840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATP6V0A1	NM_001130020	exon16	c.G1816T	p.A606S	TATGATGCTCATA	.	655.0	63.0	177.0	0.0	.	67	.	.	Atlas-SNP
WNK4	65266	hgsc.bcm.edu	hg19	17	40946819	40946819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WNK4	NM_032387	exon14	c.C2380G	p.H794D	CTGGAGCACAGGA	.	155.0	51.0	89.0	0.0	.	182	.	.	Atlas-SNP
CNTD1	124817	hgsc.bcm.edu	hg19	17	40961398	40961398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CNTD1	NM_173478	exon7	c.C838A	p.Q280K	CATTTGCAGAGCA	.	188.0	11.0	77.0	0.0	.	22	.	.	Atlas-SNP
CCDC43	124808	hgsc.bcm.edu	hg19	17	42756228	42756228	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CCDC43	NM_144609	exon5	c.G671C	p.R224P	GGTTATCGCTTTC	.	287.0	18.0	155.0	0.0	.	34	.	.	Atlas-SNP
GJC1	10052	hgsc.bcm.edu	hg19	17	42883077	42883077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GJC1	NM_005497	exon3	c.G109C	p.A37P	CTACAGCTGTAAG	.	223.0	20.0	62.0	0.0	.	45	.	.	Atlas-SNP
NFE2L1	4779	hgsc.bcm.edu	hg19	17	46136906	46136906	+	Missense_Mutation	SNP	A	A	T	rs141070896	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NFE2L1	NM_003204	exon6	c.A2222T	p.Q741L	CGCTCCAGTACGC	.	62.0	7.0	21.0	0.0	.	60	.	A|1.000;G|0.000	Atlas-SNP
DLX4	1748	hgsc.bcm.edu	hg19	17	48046980	48046980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	DLX4,caecum,carcinoma,0,1	DLX4	NM_138281	exon1	c.C148T	p.P50S	TCCAGGCCGTATG	.	61.0	7.0	12.0	0.0	.	25	.	.	Atlas-SNP
SGCA	6442	hgsc.bcm.edu	hg19	17	48244792	48244792	+	Missense_Mutation	SNP	G	G	T	rs371675217	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	SGCA,colon,carcinoma,0,1	SGCA	NM_001135697	exon2	c.G101T	p.R34L	TGGGCCGTGTCTT	.	170.0	8.0	65.0	0.0	.	35	.	.	Atlas-SNP
EPN3	55040	hgsc.bcm.edu	hg19	17	48614425	48614425	+	Missense_Mutation	SNP	C	C	T	rs146173668		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EPN3	NM_017957	exon2	c.C508T	p.R170C	TTCAGCCGCCGCT	.	127.0	22.0	12.0	0.0	.	32	.	C|1.000;T|0.000	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48695290	48695290	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CACNA1G	NM_001256325	exon30	c.G5247A	p.Q1749Q	GCCCCAGGTAGCC	.	120.0	44.0	46.0	0.0	.	659	.	.	Atlas-SNP
SPAG9	9043	hgsc.bcm.edu	hg19	17	49067132	49067132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPAG9	NM_001130528	exon21	c.G2719A	p.D907N	AGATGTCCACTGT	.	239.0	95.0	139.0	0.0	.	151	.	.	Atlas-SNP
TOM1L1	10040	hgsc.bcm.edu	hg19	17	52991114	52991114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TOM1L1	NM_005486	exon5	c.G378C	p.W126C	GACTTGGTCACAG	.	132.0	8.0	63.0	0.0	.	33	.	.	Atlas-SNP
SMG8	55181	hgsc.bcm.edu	hg19	17	57288227	57288227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SMG8	NM_018149	exon1	c.A815G	p.N272S	AACTCAATGGAGC	.	120.0	16.0	29.0	0.0	.	79	.	.	Atlas-SNP
RPS6KB1	6198	hgsc.bcm.edu	hg19	17	58013587	58013587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RPS6KB1	NM_001272043	exon11	c.A990T	p.R330S	GAAAAGAAATGCT	.	201.0	21.0	107.0	0.0	.	43	.	.	Atlas-SNP
DDX42	11325	hgsc.bcm.edu	hg19	17	61890756	61890756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DDX42	NM_203499	exon15	c.G1844T	p.R615L	TGGTCCGGAACTT	.	181.0	13.0	61.0	0.0	.	86	.	.	Atlas-SNP
PSMC5	5705	hgsc.bcm.edu	hg19	17	61908431	61908431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PSMC5	NM_002805	exon8	c.C715T	p.R239W	ATGGCACGGGAAC	.	140.0	11.0	61.0	0.0	.	41	.	.	Atlas-SNP
CSH1	1442	hgsc.bcm.edu	hg19	17	61972411	61972411	+	Missense_Mutation	SNP	G	G	T	rs61764004		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	CSH1,brain,atypical_teratoid-rhabdoid_tumour,0,1	CSH1	NM_001317	exon5	c.C625A	p.R209S	CAGAGCGGCACTG	.	209.0	9.0	77.0	1.0	.	18	.	G|0.993;T|0.007	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	hg19	17	72344027	72344027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KIF19	NM_153209	exon9	c.A1036G	p.I346V	AAGAACATTAAGA	.	67.0	10.0	8.0	0.0	.	102	.	.	Atlas-SNP
CDR2L	30850	hgsc.bcm.edu	hg19	17	72998268	72998268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	HUMPPA,NS,carcinoma,0,1	.	NM_014603	exon4	c.C451T	p.R151C	CGGGAACGCAGGC	.	77.0	7.0	18.0	0.0	.	.	.	.	Atlas-SNP
WBP2	23558	hgsc.bcm.edu	hg19	17	73851333	73851333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WBP2	NM_012478	exon1	c.A46G	p.N16D	TGTTATTGACGAT	.	222.0	51.0	98.0	0.0	.	17	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73916170	73916170	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FBF1	NM_001080542	exon18	c.G1804C	p.E602Q	CCCGTTCTAGCTC	.	107.0	45.0	45.0	0.0	.	48	.	.	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74383503	74383503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPHK1	NM_182965	exon6	c.C1249G	p.P417A	TTGGAGCCCAAGG	.	122.0	15.0	45.0	0.0	.	24	.	.	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77077980	77077980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ENGASE	NM_001042573	exon7	c.G873T	p.R291S	TCTCAGGGTCTTC	.	125.0	11.0	51.0	0.0	.	55	.	.	Atlas-SNP
GAA	2548	hgsc.bcm.edu	hg19	17	78091993	78091993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GAA	NM_001079803	exon19	c.G2483T	p.G828V	TCCAGGGCCCTGG	.	107.0	19.0	34.0	0.0	.	66	.	.	Atlas-SNP
CCDC57	284001	hgsc.bcm.edu	hg19	17	80115731	80115731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CCDC57	NM_198082	exon14	c.C2134T	p.Q712X	CCACCTGCTTCCG	.	80.0	6.0	21.0	0.0	.	102	.	.	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2925247	2925247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LPIN2	NM_014646	exon14	c.C1913G	p.S638C	CGGAGAGACTTCT	.	167.0	9.0	89.0	0.0	.	75	.	.	Atlas-SNP
RAB31	11031	hgsc.bcm.edu	hg19	18	9859227	9859227	+	Missense_Mutation	SNP	C	C	A	rs147665641	bycluster;by1000genomes;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	RAB31,colon,carcinoma,0,1	RAB31	NM_006868	exon7	c.C493A	p.R165S	GCAGGCCGCCAGA	.	141.0	24.0	54.0	0.0	.	23	.	C|0.999;T|0.001	Atlas-SNP
CEP76	79959	hgsc.bcm.edu	hg19	18	12691398	12691398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CEP76	NM_024899	exon7	c.G893T	p.R298L	GAGGGTCGAATTT	.	127.0	10.0	65.0	0.0	.	45	.	.	Atlas-SNP
CEP192	55125	hgsc.bcm.edu	hg19	18	13056654	13056654	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CEP192	NM_032142	exon19	c.C4065T	p.N1355N	TACAAACTGTGGA	.	111.0	46.0	69.0	0.0	.	340	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31314285	31314285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ASXL3	NM_030632	exon10	c.C988T	p.P330S	TTTACCCCAGAAA	.	198.0	8.0	111.0	0.0	.	405	.	.	Atlas-SNP
SYT4	6860	hgsc.bcm.edu	hg19	18	40854035	40854035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SYT4	NM_020783	exon2	c.A359T	p.N120I	GTTGCATTCTCCA	.	188.0	8.0	85.0	0.0	.	162	.	.	Atlas-SNP
RAB27B	5874	hgsc.bcm.edu	hg19	18	52556472	52556472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RAB27B	NM_004163	exon6	c.C485A	p.T162K	TTGAAACAAGTGC	.	108.0	7.0	40.0	0.0	.	24	.	.	Atlas-SNP
VPS4B	9525	hgsc.bcm.edu	hg19	18	61067824	61067824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	VPS4B	NM_004869	exon6	c.A597G	p.I199M	GGAAGATATTGAA	.	238.0	16.0	87.0	0.0	.	33	.	.	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	hg19	18	63430104	63430104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDH7	NM_004361	exon2	c.G26T	p.C9F	AGTTCTGCCATTT	.	131.0	8.0	54.0	0.0	.	362	.	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1051263	1051263	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ABCA7	NM_019112	exon20	c.A2794T	p.K932X	GTCTCCAAGCAGA	.	120.0	15.0	36.0	0.0	.	174	.	.	Atlas-SNP
DPP9	91039	hgsc.bcm.edu	hg19	19	4682767	4682767	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DPP9	NM_139159	exon20	c.C2415T	p.N805N	CTGGTTGTTCTCA	.	119.0	13.0	56.0	0.0	.	59	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9002558	9002558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MUC16	NM_024690	exon51	c.C40258A	p.H13420N	TGCCGTGGGTCAG	.	210.0	26.0	91.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9086899	9086899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MUC16	NM_024690	exon1	c.G4916C	p.S1639T	CTACTACTGCTCC	.	317.0	16.0	144.0	0.0	.	4315	.	.	Atlas-SNP
OR7D4	125958	hgsc.bcm.edu	hg19	19	9324856	9324856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OR7D4	NM_001005191	exon1	c.C658A	p.Q220K	CAATCTGAGAGTA	.	88.0	7.0	65.0	0.0	.	66	.	.	Atlas-SNP
OR7D4	125958	hgsc.bcm.edu	hg19	19	9324879	9324879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	OR7D4,right_upper_lobe,carcinoma,0,1	OR7D4	NM_001005191	exon1	c.C635A	p.A212D	ATCCCAGCTACAG	.	85.0	10.0	59.0	0.0	.	66	.	.	Atlas-SNP
PIN1	5300	hgsc.bcm.edu	hg19	19	9949168	9949168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	PIN1_ENST00000247970,NS,carcinoma,0,1	PIN1	NM_006221	exon2	c.G115T	p.G39C	CCCAGCGGCAACA	.	96.0	9.0	30.0	0.0	.	7	.	.	Atlas-SNP
ZNF440	126070	hgsc.bcm.edu	hg19	19	11942428	11942428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF440	NM_152357	exon4	c.G437A	p.C146Y	GTAAGTGTCAACA	.	203.0	76.0	96.0	0.0	.	56	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23545393	23545393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF91	NM_003430	exon4	c.G388T	p.D130Y	ACTCATCCACACT	.	207.0	22.0	95.0	0.0	.	349	.	.	Atlas-SNP
ANKRD27	84079	hgsc.bcm.edu	hg19	19	33134347	33134347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ANKRD27	NM_032139	exon7	c.A629T	p.Q210L	ACTGCCTGCTTCA	.	118.0	63.0	52.0	0.0	.	86	.	.	Atlas-SNP
RGS9BP	388531	hgsc.bcm.edu	hg19	19	33167297	33167297	+	Missense_Mutation	SNP	C	C	T	rs371159333		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RGS9BP	NM_207391	exon1	c.C128T	p.T43M	AAAAGACGCGCCA	.	18.0	6.0	8.0	0.0	.	9	.	.	Atlas-SNP
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34791740	34791740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KIAA0355	NM_014686	exon2	c.A362C	p.Q121P	ATGTGCAGGAGCA	.	128.0	15.0	48.0	0.0	.	105	.	.	Atlas-SNP
SBSN	374897	hgsc.bcm.edu	hg19	19	36019030	36019030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SBSN	NM_001166034	exon1	c.G154T	p.D52Y	TGCCATCCAGGGC	.	205.0	44.0	81.0	0.0	.	58	.	.	Atlas-SNP
ZNF527	84503	hgsc.bcm.edu	hg19	19	37879212	37879212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF527	NM_032453	exon5	c.G261T	p.W87C	AGACTGGGAGTCT	.	284.0	23.0	70.0	0.0	.	78	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38378502	38378502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WDR87	NM_031951	exon6	c.G5692T	p.E1898X	CCTTTTCCTGTGT	.	274.0	18.0	110.0	0.0	.	191	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38378503	38378503	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WDR87	NM_031951	exon6	c.G5691C	p.Q1897H	CTTTTCCTGTGTC	.	276.0	18.0	111.0	0.0	.	191	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40366097	40366097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FCGBP	NM_003890	exon30	c.G14137A	p.A4713T	AGGTAGCCACTGC	.	77.0	8.0	19.0	0.0	.	416	.	.	Atlas-SNP
MAP3K10	4294	hgsc.bcm.edu	hg19	19	40715117	40715117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MAP3K10	NM_002446	exon6	c.G1543A	p.A515T	CTGAGGGCCATTC	.	85.0	41.0	18.0	0.0	.	70	.	.	Atlas-SNP
CEACAM3	1084	hgsc.bcm.edu	hg19	19	42300660	42300660	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CEACAM3	NM_001815	exon1	c.G51A	p.G17G	GCAGGGGCTTCTG	.	65.0	29.0	50.0	0.0	.	37	.	.	Atlas-SNP
PHLDB3	653583	hgsc.bcm.edu	hg19	19	43983597	43983597	+	Missense_Mutation	SNP	C	C	A	rs200179651	bycluster;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PHLDB3	NM_198850	exon14	c.G1634T	p.R545L	TTGATGCGGCCGC	.	221.0	19.0	37.0	0.0	.	30	.	.	Atlas-SNP
SYMPK	8189	hgsc.bcm.edu	hg19	19	46321291	46321291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SYMPK	NM_004819	exon23	c.A3007C	p.I1003L	ACTGGATGACGGT	.	98.0	49.0	41.0	0.0	.	104	.	.	Atlas-SNP
CCDC8	83987	hgsc.bcm.edu	hg19	19	46914889	46914889	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CCDC8	NM_032040	exon1	c.G1179A	p.A393A	GGCCTCCGCCCTC	.	131.0	9.0	105.0	0.0	.	56	.	.	Atlas-SNP
KCNA7	3743	hgsc.bcm.edu	hg19	19	49573841	49573841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KCNA7	NM_031886	exon2	c.C850T	p.R284C	AGACACGCACCAA	.	72.0	9.0	28.0	0.0	.	30	.	.	Atlas-SNP
VRK3	51231	hgsc.bcm.edu	hg19	19	50482384	50482384	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	VRK3	NM_016440	exon14	c.A1392G	p.P464P	GTCATATGGAGAC	.	103.0	33.0	46.0	0.0	.	49	.	.	Atlas-SNP
KLK11	11012	hgsc.bcm.edu	hg19	19	51530742	51530742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KLK11	NM_144947	exon1	c.A32G	p.K11R	GATGACTTCCAGT	.	83.0	11.0	32.0	0.0	.	28	.	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	hg19	19	52001391	52001391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SIGLEC12	NM_053003	exon5	c.G1286T	p.G429V	AGCACCCCAAGGT	.	104.0	9.0	41.0	0.0	.	243	.	.	Atlas-SNP
ZNF613	79898	hgsc.bcm.edu	hg19	19	52443518	52443518	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF613	NM_001031721	exon4	c.C72G	p.L24L	GCAGCTCCTCGGC	.	171.0	62.0	35.0	0.0	.	62	.	.	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	hg19	19	53761997	53761997	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	VN1R2,NS,carcinoma,0,1	VN1R2	NM_173856	exon1	c.C369A	p.S123S	AAGATCCACAGAT	.	130.0	61.0	72.0	0.0	.	71	.	.	Atlas-SNP
OSCAR	126014	hgsc.bcm.edu	hg19	19	54602893	54602893	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OSCAR	NM_130771	exon4	c.71-1G>T	.	TGGCCACTAAGGG	.	88.0	9.0	42.0	0.0	.	22	.	.	Atlas-SNP
LILRA1	11024	hgsc.bcm.edu	hg19	19	55111991	55111991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	LILRA1	NM_006863	exon9	c.C1327A	p.L443I	AACACCCTCAGCC	.	167.0	20.0	63.0	0.0	.	105	.	.	Atlas-SNP
GP6	51206	hgsc.bcm.edu	hg19	19	55543507	55543507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	GP6,NS,carcinoma,0,1	GP6	NM_016363	exon3	c.G325A	p.G109R	CTTTACCCGTGGC	.	43.0	2.0	10.0	0.0	.	55	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55713470	55713470	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	PTPRH,colon,carcinoma,0,1	PTPRH	NM_002842	exon6	c.G1107A	p.G369G	ATTCTTCCCCACC	.	204.0	22.0	96.0	1.0	.	139	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55716907	55716907	+	Missense_Mutation	SNP	C	C	A	rs144055741	bycluster;alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PTPRH	NM_002842	exon4	c.G406T	p.A136S	TCAGGGCGATGGA	.	233.0	10.0	101.0	0.0	.	139	.	C|1.000;T|0.000	Atlas-SNP
ZNF264	9422	hgsc.bcm.edu	hg19	19	57723567	57723567	+	Nonsense_Mutation	SNP	G	G	T	rs373693955	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF264	NM_003417	exon4	c.G1102T	p.E368X	ACCGGGGAGAAGC	.	181.0	24.0	73.0	0.0	.	65	.	.	Atlas-SNP
ZNF543	125919	hgsc.bcm.edu	hg19	19	57840472	57840472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF543	NM_213598	exon4	c.T1642C	p.S548P	CGCGGCTCATCCC	.	144.0	6.0	71.0	0.0	.	61	.	.	Atlas-SNP
SIRPD	128646	hgsc.bcm.edu	hg19	20	1532400	1532400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SIRPD	NM_178460	exon2	c.T358C	p.F120L	TTATGAACTTCAC	.	161.0	20.0	59.0	0.0	.	34	.	.	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	hg19	20	4202228	4202228	+	Missense_Mutation	SNP	G	G	T	rs371559421	alternate_allele	TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ADRA1D	NM_000678	exon2	c.C1661A	p.A554D	CAGGTGGCGCCCT	.	121.0	18.0	43.0	0.0	.	36	.	.	Atlas-SNP
ADRA1D	146	hgsc.bcm.edu	hg19	20	4202229	4202229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ADRA1D	NM_000678	exon2	c.G1660A	p.A554T	AGGTGGCGCCCTC	.	119.0	19.0	43.0	0.0	.	36	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9401994	9401994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLCB4	NM_001172646	exon26	c.G2205T	p.E735D	CGTAGAGGTGGAT	.	153.0	14.0	60.0	0.0	.	204	.	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	hg19	20	16316592	16316592	+	Silent	SNP	T	T	C	rs370943548		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KIF16B	NM_024704	exon24	c.A3690G	p.T1230T	CTTCAATGTTTTA	.	68.0	34.0	64.0	0.0	.	305	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20056165	20056165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	C20orf26	NM_015585	exon6	c.G472T	p.G158W	CAAGTGGGGAACA	.	127.0	9.0	77.0	0.0	.	188	.	.	Atlas-SNP
GZF1	64412	hgsc.bcm.edu	hg19	20	23345190	23345190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GZF1	NM_022482	exon1	c.G170A	p.S57N	CCACCAGCAAGTT	.	112.0	15.0	57.0	0.0	.	61	.	.	Atlas-SNP
BPIFA1	51297	hgsc.bcm.edu	hg19	20	31825552	31825552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_016583	exon2	c.G35A	p.G12E	TCTACGGGCTGTT	.	88.0	34.0	63.0	0.0	.	.	.	.	Atlas-SNP
TRPC4AP	26133	hgsc.bcm.edu	hg19	20	33598060	33598060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRPC4AP	NM_015638	exon12	c.C1441G	p.L481V	CATTCAGCTCCTG	.	241.0	22.0	102.0	0.0	.	64	.	.	Atlas-SNP
RALGAPB	57148	hgsc.bcm.edu	hg19	20	37154091	37154091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	RALGAPB,NS,carcinoma,0,1	RALGAPB	NM_020336	exon12	c.G1832C	p.R611P	AATTGCGAAGATC	.	380.0	16.0	140.0	0.0	.	134	.	.	Atlas-SNP
ELMO2	63916	hgsc.bcm.edu	hg19	20	45004003	45004003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ELMO2	NM_182764	exon12	c.A937G	p.R313G	TGTCCCTTTGAGC	.	172.0	15.0	71.0	0.0	.	51	.	.	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	hg19	20	50346419	50346419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ATP9A	NM_006045	exon2	c.A167T	p.N56I	ATGACATTCCGAG	.	134.0	12.0	55.0	0.0	.	135	.	.	Atlas-SNP
BMP7	655	hgsc.bcm.edu	hg19	20	55840845	55840845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	BMP7	NM_001719	exon1	c.A334T	p.S112C	GGGTACTGAAGAC	.	112.0	16.0	52.0	0.0	.	60	.	.	Atlas-SNP
STX16	8675	hgsc.bcm.edu	hg19	20	57246217	57246217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	STX16	NM_001001433	exon7	c.C656A	p.T219K	GTTTTACAGAGGA	.	125.0	6.0	55.0	0.0	.	36	.	.	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	hg19	20	58560154	58560154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CDH26	NM_177980	exon7	c.C807A	p.N269K	AGGCAACAACCAC	.	68.0	9.0	16.0	0.0	.	229	.	.	Atlas-SNP
YTHDF1	54915	hgsc.bcm.edu	hg19	20	61835099	61835099	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	YTHDF1	NM_017798	exon4	c.G193C	p.G65R	GAAATCCAATGGA	.	84.0	26.0	32.0	0.0	.	66	.	.	Atlas-SNP
NPBWR2	2832	hgsc.bcm.edu	hg19	20	62737266	62737266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NPBWR2	NM_005286	exon1	c.G919A	p.A307T	AGTTGGCGTAGCT	.	89.0	11.0	31.0	0.0	.	36	.	.	Atlas-SNP
KRTAP13-2	337959	hgsc.bcm.edu	hg19	21	31744410	31744410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KRTAP13-2	NM_181621	exon1	c.G122T	p.C41F	GGAGAGCAGAGGT	.	158.0	10.0	73.0	0.0	.	29	.	.	Atlas-SNP
KRTAP22-1	337979	hgsc.bcm.edu	hg19	21	31973499	31973499	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	KRTAP22-1	NM_181620	exon1	c.C60A	p.C20X	GGGCTGCAGCTAT	.	184.0	60.0	97.0	0.0	.	16	.	.	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	hg19	21	33296847	33296847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HUNK	NM_014586	exon2	c.G329A	p.R110Q	TGCGGCGAGAGGG	.	134.0	19.0	52.0	0.0	.	74	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34925206	34925206	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SON	NM_032195	exon3	c.T3669A	p.P1223P	GGAGCCTTCAGCA	.	164.0	69.0	88.0	0.0	.	343	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38538901	38538901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TTC3	NM_001001894	exon33	c.A4385G	p.Q1462R	ACGTGCAGATGGT	.	228.0	22.0	85.0	0.0	.	182	.	.	Atlas-SNP
RRP1B	23076	hgsc.bcm.edu	hg19	21	45094517	45094517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RRP1B	NM_015056	exon5	c.C358A	p.L120M	CTTTAGCTGATTC	.	144.0	9.0	54.0	0.0	.	51	.	.	Atlas-SNP
KRTAP10-1	386677	hgsc.bcm.edu	hg19	21	45959615	45959615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	KRTAP10-1,NS,carcinoma,0,1	KRTAP10-1	NM_198691	exon1	c.C419A	p.S140Y	CAGCAGGACTGCT	.	171.0	11.0	114.0	0.0	.	34	.	.	Atlas-SNP
KRTAP10-1	386677	hgsc.bcm.edu	hg19	21	45959819	45959819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	KRTAP10-1,NS,carcinoma,0,1	KRTAP10-1	NM_198691	exon1	c.C215T	p.T72I	GAGCTGGTGCAGC	.	40.0	3.0	48.0	0.0	.	34	.	.	Atlas-SNP
SCARF2	91179	hgsc.bcm.edu	hg19	22	20784723	20784723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SCARF2	NM_182895	exon6	c.G1195A	p.G399R	GGGGCCCGTGGAC	.	24.0	8.0	13.0	0.0	.	23	.	.	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	hg19	22	26688528	26688528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SEZ6L	NM_001184777	exon2	c.T251C	p.V84A	AGCTGGTGCTGGA	.	67.0	10.0	31.0	0.0	.	174	.	.	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30069414	30069414	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NF2	NM_000268	exon12	c.G1279T	p.E427X	CTGATGGAGCAGA	.	123.0	7.0	45.0	0.0	.	1312	.	.	Atlas-SNP
PLA2G3	50487	hgsc.bcm.edu	hg19	22	31533849	31533849	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLA2G3	NM_015715	exon4	c.A913T	p.K305X	GCTGCTTCTGTCG	.	209.0	23.0	83.0	0.0	.	85	.	.	Atlas-SNP
PLA2G3	50487	hgsc.bcm.edu	hg19	22	31534717	31534717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLA2G3	NM_015715	exon2	c.C583A	p.Q195K	TGTACTGCAAGGG	.	311.0	16.0	133.0	0.0	.	85	.	.	Atlas-SNP
MCM5	4174	hgsc.bcm.edu	hg19	22	35796490	35796490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MCM5	NM_006739	exon2	c.A59G	p.Q20R	ACGCCCAGGCCGA	.	140.0	8.0	61.0	0.0	.	54	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38120914	38120914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRIOBP	NM_001039141	exon7	c.A2351G	p.N784S	CTCCCAATAGAGC	.	161.0	15.0	90.0	0.0	.	262	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41560092	41560092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	EP300	NM_001429	exon22	c.A3764T	p.H1255L	AGATGCATCAGAT	.	260.0	24.0	127.0	0.0	.	367	.	.	Atlas-SNP
POLR3H	171568	hgsc.bcm.edu	hg19	22	41928119	41928119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	POLR3H	NM_001018050	exon4	c.C338A	p.S113X	TGCAGTGACTCTG	.	70.0	34.0	47.0	0.0	.	30	.	.	Atlas-SNP
CRELD2	79174	hgsc.bcm.edu	hg19	22	50316298	50316298	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CRELD2	NM_001135101	exon7	c.A778T	p.N260Y	CTGACCAACAGAG	.	54.0	27.0	51.0	0.0	.	57	.	.	Atlas-SNP
IL17REL	400935	hgsc.bcm.edu	hg19	22	50439551	50439551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IL17REL	NM_001001694	exon4	c.C69G	p.C23W	CATCGCGCAGCCG	.	160.0	17.0	46.0	0.0	.	21	.	.	Atlas-SNP
TRABD	80305	hgsc.bcm.edu	hg19	22	50636557	50636557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TRABD	NM_025204	exon9	c.C898G	p.H300D	ATGGGCCACGTGC	.	83.0	27.0	41.0	0.0	.	21	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50898976	50898976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SBF1	NM_002972	exon24	c.G3133A	p.G1045S	AAGGACCCTTGTC	.	77.0	4.0	32.0	0.0	.	211	.	.	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	hg19	X	10085259	10085259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	WWC3	NM_015691	exon11	c.G1160A	p.S387N	CCCTGAGCTCGGT	.	92.0	84.0	21.0	0.0	.	142	.	.	Atlas-SNP
MAP3K15	389840	hgsc.bcm.edu	hg19	X	19379516	19379516	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MAP3K15	NM_001001671	exon28	c.T3798C	p.Y1266Y	AAGTGTATAACCC	.	179.0	18.0	70.0	0.0	.	108	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20252926	20252926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RPS6KA3	NM_004586	exon2	c.C76T	p.Q26X	TTTGCTGTCCATT	.	337.0	33.0	85.0	0.0	.	110	.	.	Atlas-SNP
CNKSR2	22866	hgsc.bcm.edu	hg19	X	21545015	21545015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CNKSR2	NM_001168647	exon10	c.G988A	p.V330I	AGCAGCGTTGCCA	.	200.0	39.0	54.0	0.0	.	158	.	.	Atlas-SNP
ARAF	369	hgsc.bcm.edu	hg19	X	47428285	47428285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ARAF	NM_001256196	exon11	c.G1254T	p.Q418H	TGCCCAGGGCATG	.	203.0	28.0	38.0	0.0	.	67	.	.	Atlas-SNP
AMER1	139285	hgsc.bcm.edu	hg19	X	63410708	63410708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_152424	exon2	c.G2459T	p.G820V	CACTTGCCTTCCC	.	125.0	34.0	25.0	0.0	.	.	.	.	Atlas-SNP
ASB12	142689	hgsc.bcm.edu	hg19	X	63444957	63444957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ASB12	NM_130388	exon2	c.G574T	p.G192W	GGTGCCCGTAGAC	.	102.0	5.0	24.0	0.0	.	102	.	.	Atlas-SNP
ASB12	142689	hgsc.bcm.edu	hg19	X	63445128	63445128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ASB12	NM_130388	exon2	c.A403G	p.S135G	AGATGCTACCACC	.	214.0	16.0	45.0	0.0	.	102	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70680629	70680629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TAF1	NM_004606	exon37	c.A5435G	p.H1812R	CTTCCCATGGTTT	.	177.0	36.0	68.0	0.0	.	439	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83128877	83128877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CYLC1	NM_021118	exon4	c.G1161T	p.L387F	AAATTTGAAGAAA	.	157.0	9.0	51.0	0.0	.	272	.	.	Atlas-SNP
CHM	1121	hgsc.bcm.edu	hg19	X	85218969	85218969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CHM	NM_000390	exon5	c.G403C	p.D135H	CAGAATCTGCAGC	.	247.0	13.0	75.0	0.0	.	57	.	.	Atlas-SNP
TGIF2LX	90316	hgsc.bcm.edu	hg19	X	89177619	89177619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGIF2LX	NM_138960	exon2	c.C535A	p.P179T	TCGGCCCCTAGCC	.	339.0	57.0	53.0	0.0	.	84	.	.	Atlas-SNP
TGIF2LX	90316	hgsc.bcm.edu	hg19	X	89177620	89177620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGIF2LX	NM_138960	exon2	c.C536G	p.P179R	CGGCCCCTAGCCA	.	345.0	59.0	52.0	0.0	.	84	.	.	Atlas-SNP
TGIF2LX	90316	hgsc.bcm.edu	hg19	X	89177754	89177754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGIF2LX	NM_138960	exon2	c.G670A	p.A224T	GATGCAGCAGTAC	.	551.0	76.0	94.0	0.0	.	84	.	.	Atlas-SNP
MORF4L2	9643	hgsc.bcm.edu	hg19	X	102931737	102931737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MORF4L2	NM_001142422	exon5	c.G219T	p.R73S	GGTCTTCCTCACG	.	133.0	31.0	33.0	0.0	.	35	.	.	Atlas-SNP
PLP1	5354	hgsc.bcm.edu	hg19	X	103041518	103041518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLP1	NM_001128834	exon4	c.A316G	p.T106A	TACAAGACCACCA	.	387.0	90.0	71.0	0.0	.	37	.	.	Atlas-SNP
PLP1	5354	hgsc.bcm.edu	hg19	X	103041636	103041636	+	Nonsense_Mutation	SNP	G	G	A	rs132630292		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLP1	NM_001128834	exon4	c.G434A	p.W145X	GAAAATGGCTAGG	.	382.0	47.0	84.0	0.0	.	37	.	.	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	hg19	X	114424168	114424168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RBMXL3	NM_001145346	exon1	c.C164A	p.T55N	TCGTCACCTTCGA	.	231.0	62.0	34.0	0.0	.	83	.	.	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	hg19	X	128722192	128722192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	OCRL	NM_000276	exon21	c.C2293T	p.L765F	GAAGAGCTCCAGC	.	173.0	32.0	57.0	0.0	.	117	.	.	Atlas-SNP
FRMD7	90167	hgsc.bcm.edu	hg19	X	131212315	131212315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FRMD7	NM_194277	exon12	c.C1730T	p.A577V	ACAAATGCATCTT	.	242.0	26.0	60.0	0.0	.	69	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135453612	135453612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GPR112	NM_153834	exon14	c.A7522G	p.M2508V	ATAAGTATGAACC	.	302.0	26.0	83.0	0.0	.	459	.	.	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140985121	140985121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MAGEC3	NM_138702	exon7	c.A1577G	p.E526G	TCTTTGAAGACAC	.	106.0	8.0	29.0	0.0	.	228	.	.	Atlas-SNP
HMGB3	3149	hgsc.bcm.edu	hg19	X	150155724	150155724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	HMGB3	NM_005342	exon4	c.A414T	p.E138D	CAGTGAAAAGCAG	.	109.0	101.0	43.0	0.0	.	27	.	.	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	hg19	X	151821044	151821044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GABRQ	NM_018558	exon9	c.C1199A	p.P400H	CTCTCCCCATCAC	.	293.0	19.0	63.0	0.0	.	131	.	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	hg19	X	153035604	153035604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLXNB3	NM_001163257	exon9	c.G1756A	p.A586T	CATTGTGCGTTCG	.	86.0	82.0	28.0	0.0	.	208	.	.	Atlas-SNP
IDH3G	3421	hgsc.bcm.edu	hg19	X	153055245	153055245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IDH3G	NM_004135	exon5	c.C268T	p.H90Y	TCACGTGCACCTC	.	69.0	16.0	9.0	0.0	.	36	.	.	Atlas-SNP
TGIF2LY	90655	hgsc.bcm.edu	hg19	Y	3447819	3447819	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGIF2LY	NM_139214	exon2	c.C534A	p.P178P	TCGGCCCCTAGCC	.	143.0	18.0	50.0	0.0	.	6	.	.	Atlas-SNP
TGIF2LY	90655	hgsc.bcm.edu	hg19	Y	3447820	3447820	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TGIF2LY	NM_139214	exon2	c.C535G	p.L179V	CGGCCCCTAGCCA	.	146.0	19.0	51.0	0.0	.	6	.	.	Atlas-SNP
SLC30A10	55532	hgsc.bcm.edu	hg19	1	220091827	220091827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC30A10	NM_018713	exon3	c.729delG	p.L243fs	.	.	116.0	72.0	24.0	0.0	.	58	.	.	Atlas-Indel,Pindel
SLC39A5	283375	hgsc.bcm.edu	hg19	12	56628734	56628739	+	In_Frame_Del	DEL	GCTCCG	GCTCCG	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	GCTCCG	GCTCCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC39A5	NM_173596	exon6	c.597_602del	p.199_201del	.	.	55.0	23.0	16.0	0.0	.	52	.	.	Atlas-Indel,Pindel
ELL2	22936	hgsc.bcm.edu	hg19	5	95226963	95226963	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ELL2	NM_012081	exon10	c.1606delG	p.V536fs	.	.	82.0	11.0	49.0	0.0	.	63	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74283297	74283298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ALB	NM_000477	exon11	c.1339_1340insT	p.L447fs	.	.	217.0	33.0	77.0	0.0	.	132	.	.	Atlas-Indel,Pindel
COL20A1	57642	hgsc.bcm.edu	hg19	20	61938948	61938948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	COL20A1	NM_020882	exon6	c.602delT	p.F201fs	.	.	62.0	24.0	31.0	0.0	.	137	.	.	Atlas-Indel,Pindel
PLCG1	5335	hgsc.bcm.edu	hg19	20	39792450	39792451	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PLCG1	NM_182811	exon10	c.987_988insT	p.Y329fs	.	.	187.0	22.0	63.0	0.0	.	111	.	.	Atlas-Indel,Pindel
MGA	23269	hgsc.bcm.edu	hg19	15	42028515	42028522	+	Frame_Shift_Del	DEL	TTTGAGCA	TTTGAGCA	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	TTTGAGCA	TTTGAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MGA	NM_001080541	exon13	c.4052_4059del	p.1351_1353del	.	.	129.0	39.0	87.0	0.0	.	264	.	.	Atlas-Indel,Pindel
SUV39H2	79723	hgsc.bcm.edu	hg19	10	14939003	14939003	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SUV39H2	NM_001193424	exon3	c.335delC	p.P112fs	.	.	64.0	15.0	33.0	0.0	.	72	.	.	Atlas-Indel,Pindel
CCDC43	124808	hgsc.bcm.edu	hg19	17	42756390	42756391	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CCDC43	NM_144609	exon5	c.509_510insAC	p.V170fs	.	.	196.0	30.0	97.0	0.0	.	34	.	.	Atlas-INDEL
RB1	5925	hgsc.bcm.edu	hg19	13	48947605	48947606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.,1	RB1	NM_000321	exon12	c.1192_1193insA	p.E398fs	.	.	609.0	110.0	146.0	0.0	.	1068	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74274521	74274524	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ALB	NM_000477	exon4	c.480_482del	p.160_161del	.	.	86.0	32.0	55.0	0.0	.	132	.	.	Atlas-Indel,Pindel
NBEA	26960	hgsc.bcm.edu	hg19	13	36229035	36229036	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NBEA	NM_015678	exon53	c.8016_8017insC	p.V2672fs	.	.	112.0	22.0	59.0	0.0	.	340	.	.	Atlas-Indel,Pindel
GALNT4	8693	hgsc.bcm.edu	hg19	12	89916661	89916662	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GALNT4	NM_003774	exon1	c.1666_1667insT	p.G556fs	.	.	196.0	26.0	113.0	0.0	.	38	.	.	Atlas-INDEL
MED24	9862	hgsc.bcm.edu	hg19	17	38179422	38179422	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	MED24	NM_014815	exon20	c.2213delT	p.M738fs	.	.	97.0	22.0	26.0	0.0	.	89	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27087894	27087898	+	Frame_Shift_Del	DEL	GCCAC	GCCAC	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	GCCAC	GCCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.,1	ARID1A	NM_139135	exon6	c.2180_2184del	p.727_728del	.	.	280.0	26.0	119.0	0.0	.	842	.	.	Atlas-Indel,Pindel
SLC5A1	6523	hgsc.bcm.edu	hg19	22	32480424	32480440	+	Frame_Shift_Del	DEL	TCCAGCTTTTCACGAAG	TCCAGCTTTTCACGAAG	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	TCCAGCTTTTCACGAAG	TCCAGCTTTTCACGAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SLC5A1	NM_000343	exon8	c.665_675del	p.222_225del	.	.	95.0	22.0	41.0	0.0	.	80	.	.	Atlas-Indel,Pindel
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120461966	120461966	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	NOTCH2	NM_024408	exon31	c.5751delA	p.A1917fs	.	.	65.0	17.0	29.0	0.0	.	348	.	.	Atlas-INDEL
DNAH7	56171	hgsc.bcm.edu	hg19	2	196825220	196825220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	DNAH7	NM_018897	exon18	c.2656delG	p.D886fs	.	.	216.0	17.0	75.0	0.0	.	512	.	.	Atlas-INDEL
ALDH1L2	160428	hgsc.bcm.edu	hg19	12	105431912	105431919	+	Frame_Shift_Del	DEL	TTAAATAT	TTAAATAT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	TTAAATAT	TTAAATAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ALDH1L2	NM_001034173	exon18	c.2108_2115del	p.703_705del	.	.	105.0	34.0	56.0	0.0	.	71	.	.	Atlas-Indel,Pindel
TCHHL1	126637	hgsc.bcm.edu	hg19	1	152057483	152057486	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	CTCT	CTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	TCHHL1	NM_001008536	exon3	c.2673_2676del	p.891_892del	.	.	402.0	76.0	108.0	0.0	.	132	.	.	Atlas-Indel,Pindel
CEP170	9859	hgsc.bcm.edu	hg19	1	243327863	243327876	+	Frame_Shift_Del	DEL	AGAACTTGTTGTGG	AGAACTTGTTGTGG	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	AGAACTTGTTGTGG	AGAACTTGTTGTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	CEP170	NM_014812	exon13	c.3387_3400del	p.1129_1134del	.	.	655.0	44.0	151.0	0.0	.	153	.	.	Atlas-Indel,Pindel
RXRB	6257	hgsc.bcm.edu	hg19	6	33166198	33166198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RXRB	NM_001270401	exon3	c.528delT	p.P176fs	.	.	112.0	10.0	25.0	0.0	.	34	.	.	Atlas-INDEL
PCDH15	65217	hgsc.bcm.edu	hg19	10	56106175	56106177	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	PCDH15	NM_001142763	exon7	c.558_560del	p.186_187del	.	.	166.0	13.0	65.0	0.0	.	1715	.	.	Atlas-Indel,Pindel
POTEM	641455	hgsc.bcm.edu	hg19	14	20000537	20000537	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	POTEM	NM_001145442	exon8	c.1199delA	p.E400fs	.	.	1473.0	239.0	197.0	0.0	.	51	.	.	Atlas-Indel,Pindel
IFT81	28981	hgsc.bcm.edu	hg19	12	110581329	110581331	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	IFT81	NM_014055	exon9	c.923_925del	p.308_309del	.	.	142.0	45.0	85.0	0.0	.	86	.	.	Atlas-Indel,Pindel
ANKRD1	27063	hgsc.bcm.edu	hg19	10	92679010	92679011	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	ANKRD1,NS,carcinoma,0,1	ANKRD1	NM_014391	exon3	c.223_224insA	p.L75fs	.	.	66.0	11.0	71.0	0.0	.	50	.	.	Atlas-INDEL
C8A	731	hgsc.bcm.edu	hg19	1	57349332	57349339	+	Frame_Shift_Del	DEL	AATTAAAC	AATTAAAC	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	AATTAAAC	AATTAAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	C8A,NS,malignant_melanoma,0,3	C8A	NM_000562	exon6	c.832_839del	p.278_280del	.	.	63.0	16.0	32.0	0.0	.	103	.	.	Atlas-Indel,Pindel
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098961	178098963	+	In_Frame_Del	DEL	TAT	TAT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	TAT	TAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	NFE2L2,bladder,carcinoma,0,18	NFE2L2	NM_006164	exon2	c.83_85del	p.28_29del	.	.	92.0	30.0	78.0	0.0	.	225	.	.	Atlas-Indel,Pindel
ZNF264	9422	hgsc.bcm.edu	hg19	19	57723451	57723453	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF264	NM_003417	exon4	c.985_987del	p.329_329del	.	.	85.0	16.0	40.0	0.0	.	65	.	.	Atlas-INDEL
GABRA2	2555	hgsc.bcm.edu	hg19	4	46390679	46390679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	GABRA2	NM_001114175	exon1	c.46delG	p.V16fs	.	.	499.0	38.0	143.0	0.0	.	134	.	.	Atlas-Indel,Pindel
ZNF267	10308	hgsc.bcm.edu	hg19	16	31927200	31927200	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	ZNF267	NM_003414	exon4	c.1629delT	p.T543fs	.	.	65.0	10.0	24.0	0.0	.	94	.	.	Atlas-INDEL
SLC52A2	79581	hgsc.bcm.edu	hg19	8	145584640	145584640	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	NM_024531	exon5	c.1302delC	p.H434fs	.	.	131.0	32.0	50.0	0.0	.	.	.	.	Atlas-Indel,Pindel
AGBL3	340351	hgsc.bcm.edu	hg19	7	134717658	134717659	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	AGBL3	NM_178563	exon6	c.482_483insT	p.P161fs	.	.	200.0	17.0	68.0	0.0	.	45	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21230944	21230945	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	APOB	NM_000384	exon26	c.8796_8797insA	p.A2932fs	.	.	298.0	27.0	135.0	0.0	.	761	.	.	Atlas-INDEL
POTEH	23784	hgsc.bcm.edu	hg19	22	16268181	16268181	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	POTEH	NM_001136213	exon8	c.1310delA	p.E437fs	.	.	1508.0	229.0	195.0	0.0	.	114	.	.	Atlas-Indel,Pindel
FCHO2	115548	hgsc.bcm.edu	hg19	5	72348291	72348292	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	FCHO2	NM_138782	exon13	c.1130_1131insA	p.L377fs	.	.	315.0	101.0	100.0	0.0	.	96	.	.	Atlas-Indel,Pindel
RPS6KL1	83694	hgsc.bcm.edu	hg19	14	75376302	75376303	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	RPS6KL1	NM_031464	exon7	c.1214_1215insG	p.E405fs	.	.	158.0	21.0	32.0	0.0	.	35	.	.	Atlas-Indel,Pindel
SPHK1	8877	hgsc.bcm.edu	hg19	17	74383108	74383109	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	SPHK1	NM_182965	exon6	c.853_854del	p.285_285del	.	.	80.0	20.0	44.0	0.0	.	24	.	.	Pindel
NAPRT1	93100	hgsc.bcm.edu	hg19	8	144657868	144657904	+	In_Frame_Del	DEL	CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG	CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG	-	novel		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG	CTGCCCTGGGTGGGGAAGGGGGTGGCCGTGAGCCCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	NAPRT1_ENST00000449291,caecum,carcinoma,0,2	NAPRT1	NM_145201	exon9	c.1108_1113del	p.370_371del	.	.	128.0	23.0	15.0	0.0	.	47	.	.	Pindel
MIR550A2	693134	hgsc.bcm.edu	hg19	7	32772637	32772639	+	RNA	DEL	TGT	TGT	-	rs113464681		TCGA-DD-A1EE-01A-11D-A12Z-10	TCGA-DD-A1EE-10A-01D-A12Z-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	65ed0706-a804-4744-a5fb-b473edf78c63	1d47f982-8d2a-4164-bf7a-ed6962fc2b13	.	.	.	.	.	.	.	.	187.0	11.0	105.0	0.0	.	.	.	TGT|0.500;-|0.500	Pindel
