Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARID1A	8289	hgsc.bcm.edu	hg19	1	27105550	27105550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	ARID1A,NS,carcinoma,0,8	ARID1A	NM_006015	exon20	c.C5161T	p.R1721X	TATTTCCGACGAT	.	234.0	117.0	122.0	0.0	.	842	.	.	Atlas-SNP
LCE1B	353132	hgsc.bcm.edu	hg19	1	152785040	152785040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	LCE1B	NM_178349	exon1	c.G118T	p.V40F	CCTCCAGTCTCTT	.	839.0	180.0	100.0	0.0	.	45	.	.	Atlas-SNP
OR2M3	127062	hgsc.bcm.edu	hg19	1	248366773	248366773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	OR2M3	NM_001004689	exon1	c.T404C	p.L135P	CCAATCTCATGAG	.	911.0	202.0	147.0	0.0	.	116	.	.	Atlas-SNP
IL18RAP	8807	hgsc.bcm.edu	hg19	2	103068506	103068506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IL18RAP	NM_003853	exon12	c.G1665T	p.M555I	CAAAATGCGCTAC	.	152.0	61.0	67.0	0.0	.	102	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160833216	160833216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PLA2R1	NM_001195641	exon16	c.T2417C	p.I806T	AACGGAATCTTGG	.	250.0	115.0	121.0	0.0	.	153	.	.	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218696257	218696257	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TNS1	NM_022648	exon20	c.G2919A	p.P973P	CAGACCCGGGGGG	.	35.0	18.0	16.0	0.0	.	251	.	.	Atlas-SNP
SPATA3	130560	hgsc.bcm.edu	hg19	2	231865207	231865207	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SPATA3	NM_139073	exon2	c.A428T	p.Q143L	ACTGGCAGATGGC	.	133.0	53.0	62.0	0.0	.	52	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164750329	164750329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SI	NM_001041	exon24	c.C2717T	p.T906I	TCATAAGTGAAAT	.	96.0	35.0	49.0	0.0	.	500	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88536324	88536324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	DSPP	NM_014208	exon5	c.A2510G	p.N837S	GCAGCAACAGCAG	.	313.0	19.0	112.0	0.0	.	174	.	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	hg19	4	185320192	185320192	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IRF2	NM_002199	exon7	c.G571T	p.E191X	CAATCTCTTGATT	.	104.0	88.0	73.0	0.0	.	53	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82833574	82833574	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	VCAN	NM_004385	exon8	c.C4752T	p.P1584P	CACTCCCACTATA	.	119.0	30.0	77.0	0.0	.	498	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127681089	127681089	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	FBN2	NM_001999	exon24	c.T3177A	p.A1059A	TCGGTTAGCAAAG	.	93.0	26.0	45.0	0.0	.	858	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	hg19	6	30954774	30954774	+	Missense_Mutation	SNP	G	G	C	rs41288649	bycluster	TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MUC21	NM_001010909	exon2	c.G822C	p.E274D	CTCTGAGTCCAGC	.	472.0	46.0	63.0	0.0	.	98	.	G|0.500;C|0.500	Atlas-SNP
TPD52L1	7164	hgsc.bcm.edu	hg19	6	125584076	125584076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TPD52L1	NM_003287	exon7	c.C583T	p.R195W	GGCTCCCGGCGGA	.	18.0	10.0	16.0	0.0	.	14	.	.	Atlas-SNP
ARHGAP18	93663	hgsc.bcm.edu	hg19	6	129927037	129927037	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ARHGAP18	NM_033515	exon10	c.C1350T	p.N450N	GTCCCTGTTTGCA	.	89.0	65.0	68.0	0.0	.	52	.	.	Atlas-SNP
INHBA	3624	hgsc.bcm.edu	hg19	7	41729607	41729607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	INHBA,colon,carcinoma,0,1	INHBA	NM_002192	exon3	c.C922T	p.R308C	GCCGACGCCGGCG	.	65.0	38.0	32.0	1.0	.	118	.	.	Atlas-SNP
ZNF107	51427	hgsc.bcm.edu	hg19	7	64167564	64167564	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZNF107	NM_016220	exon7	c.T882C	p.H294H	AATTCATACTGGA	.	81.0	40.0	43.0	0.0	.	107	.	.	Atlas-SNP
ELN	2006	hgsc.bcm.edu	hg19	7	73474235	73474235	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ELN	NM_001081754	exon23	c.C1449T	p.G483G	TGTCGGCGTGGCT	.	614.0	39.0	99.0	0.0	.	81	.	.	Atlas-SNP
SLC26A4	5172	hgsc.bcm.edu	hg19	7	107315471	107315471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	SLC26A4	NM_000441	exon6	c.G682T	p.A228S	GCTGCTGCCTTCC	.	310.0	23.0	108.0	0.0	.	117	.	.	Atlas-SNP
PCMTD1	115294	hgsc.bcm.edu	hg19	8	52733023	52733023	+	Missense_Mutation	SNP	T	T	C	rs114725410		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PCMTD1	NM_052937	exon6	c.A962G	p.N321S	GCTTCATTGTGAT	.	754.0	40.0	162.0	0.0	.	73	.	.	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105361088	105361088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	NM_001257317	exon2	c.C308A	p.T103K	CTGGCACAGGGAT	.	222.0	89.0	90.0	0.0	.	.	.	.	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	hg19	9	79867172	79867172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	VPS13A_ENST00000376634,caecum,carcinoma,0,3	VPS13A	NM_001018038	exon22	c.G2192A	p.R731Q	AAGCACGAAAACT	.	139.0	64.0	61.0	0.0	.	735	.	.	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	hg19	10	52008360	52008360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ASAH2	NM_019893	exon1	c.G11A	p.R4H	AAGGTGCGTTTGG	.	104.0	37.0	65.0	0.0	.	69	.	.	Atlas-SNP
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10821282	10821282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	EIF4G2,colon,carcinoma,0,2	EIF4G2	NM_001172705	exon19	c.G2141A	p.R714H	AACATGCGGTCCT	.	112.0	18.0	55.0	0.0	.	89	.	.	Atlas-SNP
NXF1	10482	hgsc.bcm.edu	hg19	11	62566040	62566040	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NXF1	NM_006362	exon11	c.C1024G	p.R342G	GTTCGCGAATGGC	.	99.0	49.0	49.0	0.0	.	67	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76917166	76917166	+	Silent	SNP	G	G	A	rs375627342		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	MYO7A,NS,carcinoma,0,1	MYO7A	NM_000260	exon41	c.G5661A	p.P1887P	CCCTCCGCACCTG	.	84.0	32.0	37.0	0.0	.	164	.	.	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124763622	124763622	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ROBO4	NM_019055	exon10	c.G1509T	p.L503L	TCTGTACAGACCT	.	283.0	106.0	93.0	0.0	.	130	.	.	Atlas-SNP
NCAPD3	23310	hgsc.bcm.edu	hg19	11	134029862	134029862	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NCAPD3	NM_015261	exon29	c.C3792T	p.V1264V	CTCCTGGACCAGC	.	117.0	60.0	43.0	0.0	.	141	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80865968	80865968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PTPRQ	NM_001145026	exon5	c.C608T	p.A203V	ATATTGCGGCTGA	.	125.0	5.0	61.0	0.0	.	119	.	.	Atlas-SNP
ZBTB1	22890	hgsc.bcm.edu	hg19	14	64989700	64989700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZBTB1	NM_014950	exon2	c.A1478G	p.N493S	AAGAGAATCCTGA	.	98.0	44.0	50.0	0.0	.	93	.	.	Atlas-SNP
ZDHHC22	283576	hgsc.bcm.edu	hg19	14	77606003	77606003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ZDHHC22	NM_174976	exon2	c.C79T	p.L27F	GGAAGAGCTGCAG	.	57.0	20.0	26.0	0.0	.	30	.	.	Atlas-SNP
STON2	85439	hgsc.bcm.edu	hg19	14	81744756	81744756	+	Missense_Mutation	SNP	G	G	A	rs201611443	bycluster	TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	STON2,NS,carcinoma,0,2	STON2	NM_001256430	exon6	c.C899T	p.T300M	GAAGGCGTGCGGT	.	118.0	15.0	61.0	0.0	.	94	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101348750	101348750	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RTL1	NM_001134888	exon1	c.C2376T	p.N792N	CATGACGTTCTTG	.	159.0	69.0	56.0	0.0	.	120	.	.	Atlas-SNP
PACS2	23241	hgsc.bcm.edu	hg19	14	105858084	105858084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PACS2	NM_001100913	exon22	c.G2236A	p.G746R	GTGAGCGGAGGCC	.	80.0	28.0	19.0	0.0	.	75	.	.	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	30012108	30012108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TJP1	NM_003257	exon20	c.C2876T	p.P959L	GGGGTGGGCTCCT	.	268.0	119.0	93.0	0.0	.	140	.	.	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	hg19	16	50357576	50357576	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	BRD7,NS,carcinoma,0,1	BRD7	NM_013263	exon12	c.T1365G	p.Y455X	ATACGGATAATCT	.	68.0	46.0	55.0	0.0	.	61	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45387555	45387555	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ITGB3	NM_000212	exon15	c.G2352C	p.T784T	TATCACGTACCGG	.	237.0	100.0	76.0	0.0	.	157	.	.	Atlas-SNP
EPN3	55040	hgsc.bcm.edu	hg19	17	48614425	48614425	+	Missense_Mutation	SNP	C	C	T	rs146173668		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	EPN3	NM_017957	exon2	c.C508T	p.R170C	TTCAGCCGCCGCT	.	44.0	19.0	14.0	0.0	.	32	.	C|1.000;T|0.000	Atlas-SNP
TOM1L1	10040	hgsc.bcm.edu	hg19	17	52991114	52991114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	TOM1L1	NM_005486	exon5	c.G378C	p.W126C	GACTTGGTCACAG	.	146.0	69.0	69.0	0.0	.	33	.	.	Atlas-SNP
PSMC5	5705	hgsc.bcm.edu	hg19	17	61908431	61908431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	PSMC5	NM_002805	exon8	c.C715T	p.R239W	ATGGCACGGGAAC	.	118.0	34.0	51.0	0.0	.	41	.	.	Atlas-SNP
POTEC	388468	hgsc.bcm.edu	hg19	18	14543063	14543063	+	Missense_Mutation	SNP	A	A	C	rs45626231	bycluster	TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	POTEC	NM_001137671	exon1	c.T83G	p.F28C	TGGTGAAACCACT	.	607.0	28.0	130.0	0.0	.	129	.	A|1.000;|0.000	Atlas-SNP
MAPK4	5596	hgsc.bcm.edu	hg19	18	48190630	48190630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MAPK4	NM_002747	exon2	c.C302T	p.A101V	GCGTGGCGTACAT	.	36.0	14.0	15.0	0.0	.	75	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20252926	20252926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	RPS6KA3	NM_004586	exon2	c.C76T	p.Q26X	TTTGCTGTCCATT	.	243.0	204.0	108.0	0.0	.	110	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	9182	9182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	.	ENST00000361899	exon1	c.G656A	p.S219N	TAGTAAGCCTCTA	.	156.0	148.0	25.0	0.0	.	.	.	.	Atlas-SNP
MCL1	4170	hgsc.bcm.edu	hg19	1	150551926	150551927	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	MCL1	NM_021960	exon1	c.81_82insG	p.G27fs	.	.	209.0	13.0	13.0	0.0	.	27	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106893	27106894	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	ARID1A	NM_006015	exon20	c.6504_6505insT	p.V2168fs	.	.	73.0	16.0	49.0	0.0	.	842	.	.	Atlas-Indel,Pindel
HEG1	57493	hgsc.bcm.edu	hg19	3	124732433	124732434	+	In_Frame_Ins	INS	-	-	AGAGGAGGAGGAGGAGGA	rs374949821	alternate_allele	TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	HEG1	NM_020733	exon6	c.1990_1991insTCCTCCTCCTCCTCCTCT	p.S664delinsSSSSSSS	.	.	102.0	14.0	36.0	0.0	.	109	.	.	Atlas-INDEL
IQCA1	79781	hgsc.bcm.edu	hg19	2	237300683	237300683	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	IQCA1	NM_001270585	exon11	c.1371delC	p.N457fs	.	.	340.0	149.0	114.0	0.0	.	170	.	.	Atlas-Indel,Pindel
FAM205A	259308	hgsc.bcm.edu	hg19	9	34723290	34723291	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	FAM205A	NM_001141917	exon4	c.3947_3948insC	p.R1316fs	.	.	140.0	10.0	46.0	0.0	.	45	.	.	Atlas-INDEL
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12125147	12125148	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	HIVEP1	NM_002114	exon4	c.5119_5120insA	p.E1707fs	.	.	246.0	43.0	63.0	0.0	.	242	.	.	Atlas-Indel,Pindel
DONSON	29980	hgsc.bcm.edu	hg19	21	34956952	34956953	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	DONSON	NM_017613	exon4	c.729_730insG	p.G243fs	.	.	172.0	11.0	66.0	0.0	.	34	.	.	Atlas-INDEL
AXIN1	8312	hgsc.bcm.edu	hg19	16	347071	347072	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	AXIN1	NM_003502	exon7	c.1940_1941insC	p.R647fs	.	.	66.0	48.0	36.0	0.0	.	290	.	.	Atlas-Indel,Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	NCAM1	NM_001242608	wholegene	.	.	.	.	26.0	26.0	0.0	0.0	.	372	.	.	Pindel
CELA1	1990	hgsc.bcm.edu	hg19	12	51740405	51740433	+	In_Frame_Del	DEL	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	-	rs372974824	byfrequency;alternate_allele	TCGA-DD-A1EH-01A-11D-A12Z-10	TCGA-DD-A1EH-10A-01D-A12Z-10	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9f03936-1de5-4330-8b0f-6d0ab533876e	47c44a9a-cfe6-4305-a9ea-b0fb5f2b5137	.	CELA1	NM_001971	exon1	c.8_16del	p.3_6del	.	.	28.0	28.0	0.0	0.0	.	39	.	-|0.574;CACCAGGAAGCG|0.426	Pindel
