Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLEKHG5	57449	hgsc.bcm.edu	hg19	1	6529206	6529206	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	PLEKHG5_ENST00000377748,colon,carcinoma,0,1	PLEKHG5	NM_001265592	exon20	c.G2382A	p.E794E	CTCCTCCTCTTCC	.	52.0	10.0	78.0	0.0	.	66	.	.	Atlas-SNP
UTS2	10911	hgsc.bcm.edu	hg19	1	7912998	7912998	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	UTS2_ENST00000361696,right_lower_lobe,carcinoma,0,1	UTS2	NM_006786	exon1	c.T66C	p.P22P	AAGGAGAGGAAGA	.	120.0	5.0	192.0	0.0	.	18	.	.	Atlas-SNP
NPPB	4879	hgsc.bcm.edu	hg19	1	11917725	11917725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NPPB	NM_002521	exon3	c.T392C	p.L131P	CGCCTCAGCACTG	.	95.0	4.0	129.0	0.0	.	24	.	.	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	hg19	1	16054156	16054156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLEKHM2	NM_015164	exon9	c.A1589G	p.Q530R	AGGCCCAGCTGTC	.	99.0	4.0	175.0	0.0	.	94	.	.	Atlas-SNP
USP48	84196	hgsc.bcm.edu	hg19	1	22083078	22083078	+	Missense_Mutation	SNP	T	T	C	rs4253886	bycluster;byhapmap;alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	USP48	NM_001032730	exon3	c.A373G	p.S125G	AGTCACTACAAGT	.	92.0	4.0	172.0	0.0	.	91	.	T|1.000;|0.000	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22202397	22202397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSPG2	NM_005529	exon24	c.A3142G	p.S1048G	CGGGGCTGGGCTC	.	97.0	4.0	116.0	0.0	.	311	.	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27057832	27057832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARID1A	NM_006015	exon3	c.T1540C	p.S514P	CAGTCCTCTCAGC	.	194.0	9.0	314.0	0.0	.	842	.	.	Atlas-SNP
SERINC2	347735	hgsc.bcm.edu	hg19	1	31905905	31905905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SERINC2	NM_001199038	exon10	c.G1132C	p.V378L	CAGCAGGTGGCAG	.	117.0	8.0	138.0	0.0	.	44	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34191012	34191012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CSMD2	NM_052896	exon17	c.T2513C	p.L838P	AGGTAGAGGTAGT	.	133.0	6.0	182.0	0.0	.	946	.	.	Atlas-SNP
RIMKLA	284716	hgsc.bcm.edu	hg19	1	42865162	42865162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RIMKLA	NM_173642	exon2	c.A251G	p.D84G	ACAGTGACATCAC	.	123.0	5.0	113.0	0.0	.	32	.	.	Atlas-SNP
LEPRE1	64175	hgsc.bcm.edu	hg19	1	43218242	43218242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LEPRE1	NM_001146289	exon9	c.A1439G	p.D480G	TCGTGGTCAGAGA	.	88.0	4.0	101.0	0.0	.	130	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NRD1	NM_001101662	exon2	c.A449T	p.E150V	TCTTCCTCCACCT	.	201.0	23.0	254.0	0.0	.	89	.	T|0.024;A|0.976	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52703754	52703754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFYVE9	NM_007323	exon4	c.A665G	p.E222G	AAACAGAGGGGAG	.	98.0	4.0	80.0	0.0	.	131	.	.	Atlas-SNP
FPGT	8790	hgsc.bcm.edu	hg19	1	74670761	74670761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FPGT	NM_003838	exon4	c.A1030G	p.T344A	AAAGGAACATCAC	.	87.0	4.0	103.0	0.0	.	77	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86904780	86904780	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CLCA2	NM_006536	exon7	c.A1194G	p.K398K	TAAGAAAGGATTT	.	88.0	4.0	136.0	0.0	.	102	.	.	Atlas-SNP
GTF2B	2959	hgsc.bcm.edu	hg19	1	89322918	89322918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF2B	NM_001514	exon6	c.A788G	p.Q263R	GATGCCTGTGAGG	.	79.0	4.0	169.0	0.0	.	32	.	.	Atlas-SNP
EVI5	7813	hgsc.bcm.edu	hg19	1	93167745	93167745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EVI5	NM_005665	exon5	c.G724A	p.G242S	AGTAACCAACCTC	.	91.0	4.0	151.0	0.0	.	94	.	.	Atlas-SNP
GPSM2	29899	hgsc.bcm.edu	hg19	1	109465167	109465167	+	Silent	SNP	T	T	A	rs79761186		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPSM2	NM_013296	exon13	c.T1569A	p.T523T	AACAACTTCTTCC	.	37.0	8.0	94.0	0.0	.	56	.	.	Atlas-SNP
GPSM2	29899	hgsc.bcm.edu	hg19	1	109465168	109465168	+	Missense_Mutation	SNP	T	T	A	rs201481482		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPSM2	NM_013296	exon13	c.T1570A	p.S524T	ACAACTTCTTCCA	.	37.0	8.0	95.0	0.0	.	56	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109793709	109793709	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CELSR2	NM_001408	exon1	c.C1008T	p.P336P	CAGCCCCTCTGAA	.	56.0	25.0	65.0	0.0	.	228	.	.	Atlas-SNP
GNAI3	2773	hgsc.bcm.edu	hg19	1	110134757	110134757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNAI3	NM_006496	exon8	c.T967C	p.F323L	ACTCACTTCACCT	.	119.0	5.0	171.0	0.0	.	25	.	.	Atlas-SNP
ALX3	257	hgsc.bcm.edu	hg19	1	110607343	110607343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALX3	NM_006492	exon2	c.C460A	p.R154S	TACGACGCTTCTT	.	220.0	118.0	344.0	0.0	.	16	.	.	Atlas-SNP
MAGI3	260425	hgsc.bcm.edu	hg19	1	114196530	114196530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAGI3	NM_152900	exon15	c.T2519C	p.V840A	CAGAGGTCCCAGC	.	86.0	5.0	89.0	0.0	.	181	.	.	Atlas-SNP
MTMR11	10903	hgsc.bcm.edu	hg19	1	149901687	149901687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	MTMR11_ENST00000439741,NS,carcinoma,0,2	MTMR11	NM_001145862	exon16	c.G1769A	p.R590H	AGCCAACGAGAAG	.	130.0	20.0	83.0	0.0	.	136	.	.	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	hg19	1	152733725	152733725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	KPRP,colon,carcinoma,+1,2	KPRP	NM_001025231	exon2	c.G1661C	p.R554P	CAGAGCGGAGGGG	.	259.0	11.0	129.0	0.0	.	152	.	.	Atlas-SNP
PGLYRP4	57115	hgsc.bcm.edu	hg19	1	153317700	153317700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PGLYRP4	NM_020393	exon4	c.C298T	p.R100W	GTTCCCGCAGTCT	.	107.0	10.0	65.0	0.0	.	45	.	.	Atlas-SNP
SMG5	23381	hgsc.bcm.edu	hg19	1	156236144	156236144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMG5	NM_015327	exon12	c.A1283G	p.E428G	TCTTTCTCCACAG	.	104.0	5.0	39.0	0.0	.	98	.	.	Atlas-SNP
KLHL20	27252	hgsc.bcm.edu	hg19	1	173720986	173720986	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHL20	NM_014458	exon4	c.T681C	p.S227S	TCGCAGTGAAGAA	.	110.0	5.0	92.0	0.0	.	54	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175323568	175323568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNR	NM_003285	exon18	c.A3341G	p.D1114G	GTGGTGTCCTGTG	.	88.0	4.0	103.0	0.0	.	399	.	.	Atlas-SNP
RALGPS2	55103	hgsc.bcm.edu	hg19	1	178854228	178854228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RALGPS2	NM_152663	exon12	c.T922C	p.S308P	GGAGCGTCTCCAC	.	97.0	4.0	115.0	0.0	.	69	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573	bycluster;by2hit2allele;byhapmap	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	GAAGAAGAACAAC	.	146.0	12.0	166.0	0.0	.	142	.	G|1.000;|0.000	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	hg19	1	180905383	180905383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1614	NM_020950	exon5	c.T2338C	p.S780P	CCTTCCTCCCTGC	.	97.0	4.0	97.0	0.0	.	75	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181767537	181767537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CACNA1E	NM_001205293	exon48	c.T6509C	p.L2170P	CCCTCCTTTCCTA	.	74.0	4.0	90.0	0.0	.	778	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182822524	182822524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DHX9	NM_001357	exon5	c.T448C	p.S150P	TACTACTCAAGAA	.	90.0	4.0	83.0	0.0	.	114	.	.	Atlas-SNP
TROVE2	6738	hgsc.bcm.edu	hg19	1	193060792	193060792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TROVE2	NM_001042370	exon10	c.A1596G	p.I532M	CAAAATACCCTAC	.	97.0	4.0	89.0	0.0	.	50	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196295981	196295981	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNT2	NM_198503	exon19	c.T2142C	p.Y714Y	GAATCCATAGGCT	.	78.0	4.0	89.0	0.0	.	243	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204978736	204978736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFASC	NM_001005388	exon28	c.T3341C	p.L1114P	TTGGGCTTATGTG	.	60.0	5.0	67.0	0.0	.	396	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208390746	208390746	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLXNA2	NM_025179	exon2	c.C522T	p.R174R	CTCAGAGCGCACA	.	94.0	4.0	72.0	0.0	.	178	.	.	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	hg19	1	222712068	222712068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HHIPL2	NM_024746	exon5	c.T1499C	p.V500A	CCAGTGACTGACT	.	117.0	5.0	150.0	0.0	.	122	.	.	Atlas-SNP
NVL	4931	hgsc.bcm.edu	hg19	1	224475603	224475603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	NVL,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	NVL	NM_002533	exon14	c.C1668A	p.F556L	AACAATGAAATCA	.	108.0	26.0	163.0	0.0	.	74	.	.	Atlas-SNP
WDR26	80232	hgsc.bcm.edu	hg19	1	224588733	224588733	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR26	NM_025160	exon9	c.A1338G	p.E446E	ACTGTCTTCATGA	.	78.0	5.0	79.0	0.0	.	104	.	.	Atlas-SNP
SDCCAG8	10806	hgsc.bcm.edu	hg19	1	243652338	243652338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SDCCAG8	NM_006642	exon17	c.A2008G	p.S670G	AAGCACAGCCAGG	.	122.0	5.0	105.0	0.0	.	73	.	.	Atlas-SNP
OSR1	130497	hgsc.bcm.edu	hg19	2	19552914	19552914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OSR1	NM_145260	exon2	c.T653C	p.L218P	TCTCGCAGGTGGT	.	59.0	4.0	78.0	0.0	.	29	.	.	Atlas-SNP
CEBPZ	10153	hgsc.bcm.edu	hg19	2	37455988	37455988	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEBPZ	NM_005760	exon2	c.A348G	p.K116K	TACTTCTTTTTTG	.	41.0	5.0	36.0	0.0	.	68	.	.	Atlas-SNP
EPAS1	2034	hgsc.bcm.edu	hg19	2	46611704	46611704	+	Missense_Mutation	SNP	A	A	G	rs371184501		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EPAS1	NM_001430	exon16	c.A2518G	p.T840A	GAACTGACCAGAT	.	96.0	4.0	100.0	0.0	.	83	.	.	Atlas-SNP
SMYD5	10322	hgsc.bcm.edu	hg19	2	73452974	73452974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMYD5	NM_006062	exon13	c.A1157G	p.D386G	AGGCTGATGAACC	.	70.0	4.0	83.0	0.0	.	58	.	.	Atlas-SNP
SEMA4F	10505	hgsc.bcm.edu	hg19	2	74883799	74883799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA4F	NM_001271662	exon2	c.A284G	p.E95G	CAGGGGAGAGACC	.	88.0	4.0	109.0	0.0	.	89	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97268497	97268497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001115016	exon18	c.C2252T	p.A751V	TGTGGGGCTGGTC	.	89.0	4.0	113.0	0.0	.	.	.	.	Atlas-SNP
BUB1	699	hgsc.bcm.edu	hg19	2	111408295	111408295	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BUB1	NM_004336	exon18	c.T2031C	p.R677R	GCTCAGACGAAGT	.	101.0	5.0	110.0	0.0	.	91	.	.	Atlas-SNP
MGAT5	4249	hgsc.bcm.edu	hg19	2	135170467	135170467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MGAT5	NM_002410	exon12	c.G1558A	p.E520K	CCTTACGAGGGCC	.	231.0	28.0	250.0	0.0	.	84	.	.	Atlas-SNP
BBS5	129880	hgsc.bcm.edu	hg19	2	170349443	170349443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BBS5	NM_152384	exon6	c.A446G	p.N149S	TTCAGAACAAGCA	.	89.0	4.0	91.0	0.0	.	27	.	.	Atlas-SNP
HOXD4	3233	hgsc.bcm.edu	hg19	2	177017387	177017387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.,1	HOXD4	NM_014621	exon2	c.C485T	p.T162I	CCTACACCCGGCA	.	49.0	3.0	54.0	0.0	.	32	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179506015	179506015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TTN	NM_001267550	exon220	c.A40586G	p.E13529G	TTAGGTTCTTCTT	.	67.0	4.0	82.0	0.0	.	18412	.	.	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	hg19	2	182358065	182358065	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA4	NM_000885	exon11	c.A1167G	p.G389G	TATCGGAGCTCCA	.	86.0	4.0	76.0	0.0	.	142	.	.	Atlas-SNP
GTF3C3	9330	hgsc.bcm.edu	hg19	2	197634689	197634689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF3C3	NM_012086	exon16	c.C2335T	p.H779Y	CCATATGAATAAA	.	90.0	17.0	99.0	0.0	.	96	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211476885	211476885	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CPS1	NM_001122633	exon21	c.T2454C	p.A818A	GAAAGCTTTACGG	.	97.0	4.0	81.0	0.0	.	485	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212295715	212295715	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ERBB4	NM_001042599	exon21	c.A2598G	p.R866R	CAAGAGTCTGGCT	.	115.0	5.0	134.0	0.0	.	480	.	.	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218713178	218713178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNS1	NM_022648	exon17	c.T1687C	p.S563P	TGGCAGACTCGTA	.	125.0	5.0	114.0	0.0	.	251	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220333960	220333960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPEG	NM_005876	exon13	c.C3574T	p.R1192W	TTCCTGCGGCCAC	.	169.0	58.0	174.0	0.0	.	272	.	.	Atlas-SNP
SLC6A1	6529	hgsc.bcm.edu	hg19	3	11064104	11064104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC6A1	NM_003042	exon7	c.T664C	p.W222R	ATCGCCTGGATCC	.	143.0	6.0	133.0	0.0	.	88	.	.	Atlas-SNP
NKIRAS1	28512	hgsc.bcm.edu	hg19	3	23942421	23942421	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NKIRAS1	NM_020345	exon4	c.C214G	p.P72A	GCTTTGGCAGCTC	.	155.0	19.0	130.0	0.0	.	18	.	.	Atlas-SNP
TOPAZ1	375337	hgsc.bcm.edu	hg19	3	44362570	44362570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	C3orf77_ENST00000309765,NS,carcinoma,0,1	.	NM_001145030	exon17	c.T4358C	p.V1453A	TGGATGTGCTTAA	.	71.0	3.0	76.0	0.0	.	.	.	.	Atlas-SNP
LTF	4057	hgsc.bcm.edu	hg19	3	46501284	46501284	+	Silent	SNP	C	C	T	rs76787706		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LTF	NM_002343	exon2	c.G69A	p.R23R	AACACTCCTCCTA	.	145.0	7.0	181.0	0.0	.	98	.	.	Atlas-SNP
APEH	327	hgsc.bcm.edu	hg19	3	49713569	49713569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	APEH	NM_001640	exon6	c.T523C	p.S175P	GCCGAGTCCTTCT	.	91.0	6.0	86.0	0.0	.	45	.	.	Atlas-SNP
PARP3	10039	hgsc.bcm.edu	hg19	3	51978115	51978115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PARP3	NM_001003931	exon3	c.A215G	p.D72G	ATGAGGACTACAA	.	97.0	6.0	107.0	0.0	.	90	.	.	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52395766	52395766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH1	NM_015512	exon30	c.A4964G	p.K1655R	TCCAGAAGGCGCA	.	173.0	7.0	173.0	0.0	.	534	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113684024	113684024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1407	NM_020817	exon17	c.A2789G	p.K930R	CTTGTCTTACTCA	.	86.0	4.0	116.0	0.0	.	80	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120941904	120941904	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5L	NM_014980	exon11	c.A1011G	p.R337R	TAGAAGACCAAGT	.	114.0	5.0	132.0	0.0	.	159	.	.	Atlas-SNP
H1FX	8971	hgsc.bcm.edu	hg19	3	129034735	129034735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	H1FX	NM_006026	exon1	c.A11G	p.E4G	TCGAGCTCCACGG	.	55.0	5.0	77.0	0.0	.	13	.	.	Atlas-SNP
RASA2	5922	hgsc.bcm.edu	hg19	3	141305546	141305546	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RASA2	NM_006506	exon19	c.C1885T	p.R629X	AAGAAACGATGGT	.	150.0	7.0	149.0	0.0	.	169	.	.	Atlas-SNP
NMD3	51068	hgsc.bcm.edu	hg19	3	160968077	160968077	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NMD3	NM_015938	exon15	c.A1344G	p.E448E	TGAAGAAGATGAG	.	69.0	4.0	69.0	0.0	.	49	.	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	hg19	3	164907099	164907099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLITRK3	NM_014926	exon2	c.A1520G	p.K507R	AGCAGCTTCAAGT	.	88.0	4.0	89.0	0.0	.	263	.	.	Atlas-SNP
YEATS2	55689	hgsc.bcm.edu	hg19	3	183472104	183472104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	YEATS2	NM_018023	exon11	c.A1341G	p.S447S	TGAGTCACCTGGA	.	81.0	4.0	76.0	0.0	.	111	.	.	Atlas-SNP
TBCCD1	55171	hgsc.bcm.edu	hg19	3	186282013	186282013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBCCD1	NM_001134415	exon2	c.A106G	p.I36V	TGGATATCTTCCT	.	78.0	4.0	92.0	0.0	.	42	.	.	Atlas-SNP
GAK	2580	hgsc.bcm.edu	hg19	4	864601	864601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GAK	NM_005255	exon19	c.A2146G	p.S716G	CCCGGCTCGGCCT	.	92.0	4.0	112.0	0.0	.	104	.	.	Atlas-SNP
WHSC1	7468	hgsc.bcm.edu	hg19	4	1932357	1932357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WHSC1	NM_133335	exon6	c.T1415C	p.V472A	AGGTGGTAGCTGA	.	91.0	4.0	112.0	0.0	.	180	.	.	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39191330	39191330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WDR19	NM_025132	exon4	c.T219C	p.A73A	GATTGCTGAGAAA	.	103.0	5.0	152.0	0.0	.	96	.	.	Atlas-SNP
GNPDA2	132789	hgsc.bcm.edu	hg19	4	44705132	44705132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNPDA2	NM_138335	exon7	c.T797C	p.V266A	GGATCCACAAGTT	.	61.0	4.0	74.0	0.0	.	28	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54325504	54325504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FIP1L1	NM_030917	exon18	c.A1673G	p.D558G	AAGGAGATAGTCA	.	83.0	4.0	85.0	0.0	.	60	.	.	Atlas-SNP
CEP135	9662	hgsc.bcm.edu	hg19	4	56847463	56847463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP135	NM_025009	exon13	c.T1697C	p.L566P	TTAGTCTTATGGA	.	92.0	4.0	110.0	0.0	.	115	.	.	Atlas-SNP
GRSF1	2926	hgsc.bcm.edu	hg19	4	71691022	71691022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GRSF1	NM_002092	exon8	c.T1384C	p.S462P	CGTGGGACCGATC	.	81.0	5.0	154.0	0.0	.	35	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76793207	76793207	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PPEF2	NM_006239	exon13	c.G1620A	p.K540K	GGTCACCTTGTTA	.	99.0	4.0	126.0	0.0	.	108	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76797570	76797570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PPEF2	NM_006239	exon11	c.A1190G	p.E397G	TCTAGCTCCAGTT	.	90.0	4.0	74.0	0.0	.	108	.	.	Atlas-SNP
NAAA	27163	hgsc.bcm.edu	hg19	4	76861242	76861242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAAA	NM_014435	exon2	c.T283C	p.F95L	CGGTGAAGGGCTG	.	105.0	5.0	132.0	0.0	.	26	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79353651	79353651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FRAS1	NM_001166133	exon38	c.T5110C	p.S1704P	GAGGTGTCCCTGT	.	118.0	5.0	145.0	0.0	.	779	.	.	Atlas-SNP
MEPE	56955	hgsc.bcm.edu	hg19	4	88767270	88767270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MEPE	NM_020203	exon4	c.A1250G	p.N417S	ATAGGAACCAAGC	.	94.0	4.0	113.0	0.0	.	86	.	.	Atlas-SNP
METAP1	23173	hgsc.bcm.edu	hg19	4	99960538	99960538	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	METAP1	NM_015143	exon5	c.T354C	p.S118S	TGAATCTGAACAG	.	75.0	4.0	72.0	0.0	.	40	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115856381	115856381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NDST4	NM_022569	exon6	c.T1517C	p.L506P	ATTGTGAGAAAAA	.	82.0	4.0	140.0	0.0	.	193	.	.	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119948231	119948231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SYNPO2	NM_001128934	exon3	c.A707G	p.D236G	CACATGACAGGAT	.	84.0	4.0	81.0	0.0	.	353	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126238284	126238284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAT4	NM_024582	exon1	c.G718T	p.V240L	GTGACTGTGCAAG	.	98.0	8.0	138.0	0.0	.	1752	.	.	Atlas-SNP
ARHGAP10	79658	hgsc.bcm.edu	hg19	4	148778702	148778702	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARHGAP10	NM_024605	exon5	c.385-2A>G	.	ATTTGTAGGAAGA	.	38.0	17.0	43.0	0.0	.	92	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151727552	151727552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRBA	NM_006726	exon33	c.A5389G	p.T1797A	TCTCTGTAATACT	.	70.0	4.0	97.0	0.0	.	253	.	.	Atlas-SNP
PDGFC	56034	hgsc.bcm.edu	hg19	4	157693868	157693868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDGFC	NM_016205	exon4	c.A673G	p.K225E	AAGCCTTGCCAAG	.	68.0	4.0	95.0	0.0	.	46	.	.	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173930373	173930373	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GALNTL6	NM_001034845	exon11	c.A1416G	p.G472G	GCATGGAGCCACC	.	92.0	5.0	136.0	0.0	.	102	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183575041	183575041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001080477	exon5	c.A1106G	p.D369G	CTGGAGACAATGG	.	92.0	4.0	115.0	0.0	.	.	.	.	Atlas-SNP
TRAPPC11	60684	hgsc.bcm.edu	hg19	4	184589187	184589187	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_021942	exon5	c.A477G	p.A159A	GGCTGCAGCTTTA	.	60.0	4.0	76.0	0.0	.	.	.	.	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1293886	1293886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TERT	NM_001193376	exon2	c.T1115C	p.M372T	CCTGGCATCCAGG	.	82.0	4.0	91.0	0.0	.	2594	.	.	Atlas-SNP
LPCAT1	79888	hgsc.bcm.edu	hg19	5	1467007	1467007	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LPCAT1	NM_024830	exon14	c.1279-2A>G	.	TACATCTGCAAGG	.	98.0	4.0	107.0	0.0	.	70	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52371092	52371092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA2	NM_002203	exon23	c.T2783C	p.L928P	TCAACCTCAAAAT	.	99.0	4.0	89.0	0.0	.	211	.	.	Atlas-SNP
DHX29	54505	hgsc.bcm.edu	hg19	5	54570765	54570765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DHX29	NM_019030	exon15	c.A2501G	p.Q834R	GCATGCTGAGTGC	.	79.0	16.0	109.0	0.0	.	116	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54603859	54603859	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	SKIV2L2,NS,carcinoma,0,1	SKIV2L2	NM_015360	exon1	c.A18G	p.G6G	ATTCGGAGATGAG	.	120.0	7.0	132.0	1.0	.	104	.	.	Atlas-SNP
PDE4D	5144	hgsc.bcm.edu	hg19	5	58270500	58270500	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE4D	NM_001104631	exon15	c.T2421C	p.P807P	CGTGTCAGGAGAA	.	131.0	6.0	122.0	0.0	.	345	.	.	Atlas-SNP
CWC27	10283	hgsc.bcm.edu	hg19	5	64079686	64079686	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CWC27	NM_005869	exon4	c.T276C	p.R92R	GTTGCGTTTTAAT	.	91.0	4.0	62.0	0.0	.	47	.	.	Atlas-SNP
MCCC2	64087	hgsc.bcm.edu	hg19	5	70942047	70942047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MCCC2	NM_022132	exon13	c.T1159C	p.F387L	ACTCACTTTGTCC	.	91.0	4.0	94.0	0.0	.	47	.	.	Atlas-SNP
COL4A3BP	10087	hgsc.bcm.edu	hg19	5	74685511	74685511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COL4A3BP	NM_001130105	exon13	c.T1574C	p.V525A	TCTTCAACCTTGA	.	77.0	4.0	93.0	0.0	.	72	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86659274	86659274	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RASA1	NM_002890	exon11	c.T1563C	p.D521D	AATAGATCTCAGT	.	69.0	4.0	83.0	0.0	.	213	.	.	Atlas-SNP
CCNH	902	hgsc.bcm.edu	hg19	5	86703825	86703825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCNH	NM_001239	exon4	c.A493G	p.R165G	ATGGTCTGTAAGG	.	82.0	4.0	96.0	0.0	.	40	.	.	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	hg19	5	93807341	93807341	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0825	NM_001145678	exon9	c.G1551T	p.V517V	GGCCTCCACCAAG	.	173.0	13.0	150.0	0.0	.	172	.	.	Atlas-SNP
ETF1	2107	hgsc.bcm.edu	hg19	5	137844500	137844500	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ETF1	NM_004730	exon10	c.A1089G	p.G363G	TTCCTGTCCGGTC	.	69.0	4.0	85.0	0.0	.	38	.	.	Atlas-SNP
DND1	373863	hgsc.bcm.edu	hg19	5	140052948	140052948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DND1	NM_194249	exon2	c.A50G	p.E17G	TTGTTCTCTGGAT	.	103.0	5.0	91.0	0.0	.	15	.	.	Atlas-SNP
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140389506	140389506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHAC2	NM_018899	exon4	c.A3008G	p.D1003G	CGACTGACAACAG	.	91.0	4.0	73.0	0.0	.	142	.	.	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140626124	140626124	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHB15	NM_018935	exon1	c.A978G	p.G326G	CGGGGGACTTTCT	.	207.0	9.0	210.0	0.0	.	138	.	.	Atlas-SNP
PCDHGB3	56102	hgsc.bcm.edu	hg19	5	140750296	140750296	+	Missense_Mutation	SNP	A	A	G	rs73265845	bycluster;by1000genomes;alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHGB3	NM_018924	exon1	c.A335G	p.K112R	CTGAAAAGCCTTT	.	68.0	4.0	66.0	0.0	.	168	.	A|0.993;T|0.007	Atlas-SNP
PCDHGB3	56102	hgsc.bcm.edu	hg19	5	140750845	140750845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCDHGB3	NM_018924	exon1	c.A884G	p.D295G	AGCTGGACAGTAA	.	98.0	32.0	85.0	0.0	.	168	.	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167881041	167881041	+	Missense_Mutation	SNP	A	A	G	rs140933524		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	WWC1	NM_015238	exon18	c.A2594G	p.E865G	AGGAGGAGGGAGA	.	151.0	12.0	167.0	0.0	.	98	.	.	Atlas-SNP
STK10	6793	hgsc.bcm.edu	hg19	5	171509502	171509502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STK10	NM_005990	exon12	c.A1817G	p.K606R	AACTTCTTCTTGG	.	100.0	4.0	88.0	0.0	.	100	.	.	Atlas-SNP
TRIM7	81786	hgsc.bcm.edu	hg19	5	180622632	180622632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TRIM7	NM_203293	exon7	c.T1070C	p.L357P	AGAGAGAGGATGA	.	121.0	5.0	114.0	0.0	.	56	.	.	Atlas-SNP
RIOK1	83732	hgsc.bcm.edu	hg19	6	7405539	7405539	+	Missense_Mutation	SNP	T	T	C	rs373917793		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RIOK1	NM_031480	exon12	c.T1154C	p.V385A	AATTTGTCACAGA	.	100.0	4.0	93.0	0.0	.	36	.	.	Atlas-SNP
ACOT13	55856	hgsc.bcm.edu	hg19	6	24698153	24698153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACOT13	NM_018473	exon2	c.A124G	p.M42V	TGTGAAATGAAAG	.	90.0	34.0	103.0	0.0	.	12	.	.	Atlas-SNP
PPP1R18	170954	hgsc.bcm.edu	hg19	6	30653159	30653159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001134870	exon2	c.A637G	p.S213G	TGGGGCTTTGCTC	.	115.0	5.0	114.0	0.0	.	.	.	.	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	hg19	6	31847967	31847967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EHMT2	NM_006709	exon28	c.A3527G	p.K1176R	GAGTGCTTGCACT	.	119.0	5.0	107.0	0.0	.	45	.	.	Atlas-SNP
SLC39A7	7922	hgsc.bcm.edu	hg19	6	33169120	33169120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC39A7	NM_006979	exon1	c.A98G	p.D33G	ATGACGACCTGCA	.	132.0	6.0	113.0	0.0	.	32	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43153709	43153709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUL9	NM_015089	exon4	c.T767C	p.L256P	AGCTGCTTTTCTC	.	111.0	6.0	96.0	0.0	.	248	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43250734	43250734	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TTBK1	NM_032538	exon14	c.A2256G	p.E752E	AGAAGAAGAGGAG	.	77.0	5.0	59.0	0.0	.	124	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51524434	51524434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	PKHD1,rectum,carcinoma,0,1	PKHD1	NM_138694	exon61	c.C10490T	p.A3497V	AATACAGCCAAGA	.	84.0	4.0	97.0	0.0	.	927	.	.	Atlas-SNP
OGFRL1	79627	hgsc.bcm.edu	hg19	6	72003034	72003034	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OGFRL1	NM_024576	exon2	c.A273G	p.R91R	AAAGAGAAGTTTT	.	143.0	22.0	127.0	0.0	.	44	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74516714	74516714	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CD109	NM_133493	exon25	c.T3108C	p.S1036S	TCATAGTGAGCTT	.	67.0	4.0	102.0	0.0	.	170	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76022124	76022124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FILIP1	NM_015687	exon5	c.A3424G	p.T1142A	ACTGGGTTCCTCG	.	47.0	5.0	76.0	0.0	.	173	.	.	Atlas-SNP
ELOVL4	6785	hgsc.bcm.edu	hg19	6	80635991	80635991	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	ELOVL4,NS,carcinoma,0,1	ELOVL4	NM_022726	exon2	c.C208A	p.R70R	GTTCTCGGTCCTT	.	45.0	2.0	66.0	0.0	.	46	.	.	Atlas-SNP
SMIM8	57150	hgsc.bcm.edu	hg19	6	88046871	88046871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	C6orf162,NS,carcinoma,0,1	.	NM_001042493	exon3	c.T122C	p.L41P	CAGAGCTCTTCAT	.	41.0	3.0	88.0	0.0	.	.	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90440507	90440507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDN1	NM_014611	exon35	c.A5078G	p.K1693R	TTGGCCTTCATTC	.	86.0	4.0	142.0	0.0	.	478	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90461216	90461216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDN1	NM_014611	exon23	c.A3161G	p.E1054G	TACGTCTCATCTA	.	109.0	5.0	164.0	0.0	.	478	.	.	Atlas-SNP
CDC40	51362	hgsc.bcm.edu	hg19	6	110540651	110540651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDC40	NM_015891	exon11	c.T1175C	p.V392A	TCTTTGTGGCTGG	.	86.0	4.0	114.0	0.0	.	39	.	.	Atlas-SNP
CDC40	51362	hgsc.bcm.edu	hg19	6	110540992	110540992	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDC40	NM_015891	exon12	c.T1260C	p.A420A	GGGAGCTGTCAAC	.	106.0	5.0	181.0	0.0	.	39	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144801024	144801024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UTRN	NM_007124	exon25	c.A3413G	p.Q1138R	AGATGCAGGAATG	.	50.0	5.0	55.0	0.0	.	327	.	.	Atlas-SNP
STXBP5	134957	hgsc.bcm.edu	hg19	6	147680286	147680286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STXBP5	NM_001127715	exon23	c.G2372T	p.R791L	AATCCCGAGAAGC	.	58.0	24.0	92.0	0.0	.	163	.	.	Atlas-SNP
EZR	7430	hgsc.bcm.edu	hg19	6	159190397	159190397	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EZR	NM_003379	exon11	c.G1305A	p.R435R	GCGCCTCCGCGCC	.	34.0	4.0	45.0	0.0	.	44	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161455479	161455479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MAP3K4	NM_006724	exon2	c.A341G	p.K114R	ATTTGAAAGGTGA	.	67.0	4.0	104.0	0.0	.	364	.	.	Atlas-SNP
PSMB1	5689	hgsc.bcm.edu	hg19	6	170844336	170844336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PSMB1	NM_002793	exon6	c.A698G	p.E233G	GTTTCCTCCCTGA	.	147.0	6.0	252.0	0.0	.	12	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5396833	5396833	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TNRC18	NM_001080495	exon16	c.C4908A	p.L1636L	CTTGGTGAGGGAG	.	93.0	4.0	118.0	0.0	.	311	.	.	Atlas-SNP
ANKMY2	57037	hgsc.bcm.edu	hg19	7	16640522	16640522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKMY2	NM_020319	exon10	c.A1190T	p.E397V	TCAGCCTCTGGTT	.	65.0	21.0	63.0	0.0	.	46	.	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	hg19	7	24749890	24749890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DFNA5	NM_001127453	exon6	c.C815G	p.A272G	CCATGCGCAGCAT	.	67.0	13.0	59.0	0.0	.	51	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31912954	31912954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	PDE1C_ENST00000396193,bladder,carcinoma,0,3	PDE1C	NM_001191058	exon7	c.T740C	p.F247S	AAAATAAATTTCA	.	66.0	3.0	113.0	0.0	.	465	.	.	Atlas-SNP
AVL9	23080	hgsc.bcm.edu	hg19	7	32590989	32590989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AVL9	NM_015060	exon5	c.A416G	p.H139R	TTACACATGCATA	.	68.0	4.0	85.0	0.0	.	66	.	.	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	hg19	7	38869928	38869928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	VPS41	NM_014396	exon5	c.A247G	p.S83G	CAGGACTCTAAAA	.	80.0	4.0	81.0	0.0	.	102	.	.	Atlas-SNP
AEBP1	165	hgsc.bcm.edu	hg19	7	44150363	44150363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AEBP1	NM_001129	exon12	c.T1440A	p.N480K	CAGCAATGACAGC	.	92.0	27.0	119.0	0.0	.	102	.	.	Atlas-SNP
FGL2	10875	hgsc.bcm.edu	hg19	7	76826056	76826056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FGL2	NM_006682	exon2	c.A860G	p.D287G	ATTTTATCGTTCC	.	125.0	5.0	192.0	0.0	.	40	.	.	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92952972	92952972	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CCDC132	NM_017667	exon21	c.T1905A	p.V635V	TGATGTTATTCAT	.	39.0	9.0	59.0	0.0	.	136	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98508787	98508787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TRRAP	NM_001244580	exon17	c.C1900T	p.H634Y	TTGGAGCATTTCG	.	100.0	4.0	136.0	0.0	.	863	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100696684	100696684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MUC17	NM_001040105	exon11	c.A13330G	p.T4444A	CCTGGGACCTTCC	.	105.0	6.0	106.0	0.0	.	804	.	.	Atlas-SNP
LRRC17	10234	hgsc.bcm.edu	hg19	7	102575006	102575006	+	Missense_Mutation	SNP	G	G	A	rs80100722	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRRC17	NM_005824	exon2	c.G646A	p.E216K	GAAGAAGAAAAGG	.	32.0	5.0	43.0	0.0	.	45	.	.	Atlas-SNP
DLD	1738	hgsc.bcm.edu	hg19	7	107533711	107533711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DLD	NM_000108	exon2	c.G106A	p.A36T	ACTTACGCAGATC	.	65.0	4.0	78.0	0.0	.	72	.	.	Atlas-SNP
LRRN3	54674	hgsc.bcm.edu	hg19	7	110764889	110764889	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRRN3	NM_018334	exon2	c.A2061G	p.G687G	AGCAGGAAAAGAA	.	22.0	4.0	14.0	0.0	.	132	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121636505	121636505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PTPRZ1	NM_001206838	exon9	c.A998G	p.E333G	CATGGGAAAGACC	.	93.0	4.0	99.0	0.0	.	605	.	.	Atlas-SNP
MKLN1	4289	hgsc.bcm.edu	hg19	7	131084062	131084062	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MKLN1	NM_013255	exon6	c.A573G	p.E191E	TACAGAAGCTTTT	.	100.0	4.0	120.0	0.0	.	67	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143043238	143043238	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CLCN1	NM_000083	exon18	c.T2178C	p.P726P	GCTTCCTCCTTCC	.	113.0	5.0	153.0	0.0	.	141	.	.	Atlas-SNP
LMBR1	64327	hgsc.bcm.edu	hg19	7	156685632	156685632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LMBR1	NM_022458	exon1	c.G56T	p.R19L	GACTCCCGCACTT	.	18.0	4.0	46.0	0.0	.	35	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52287209	52287209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PXDNL	NM_144651	exon18	c.A3640G	p.T1214A	TAAGTGTTGGTCC	.	56.0	4.0	52.0	0.0	.	414	.	.	Atlas-SNP
NKAIN3	286183	hgsc.bcm.edu	hg19	8	63492222	63492222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	NKAIN3,caecum,carcinoma,0,1	NKAIN3	NM_173688	exon2	c.G179A	p.R60Q	GACCTCGATACAT	.	61.0	3.0	46.0	0.0	.	32	.	.	Atlas-SNP
TMEM67	91147	hgsc.bcm.edu	hg19	8	94827602	94827602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TMEM67	NM_153704	exon27	c.T2834C	p.L945P	ATCTGCTGTTCTT	.	86.0	4.0	78.0	0.0	.	187	.	.	Atlas-SNP
CDH17	1015	hgsc.bcm.edu	hg19	8	95161099	95161099	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH17	NM_004063	exon14	c.T1800C	p.Y600Y	CAGTGAATAGCTT	.	97.0	4.0	118.0	0.0	.	119	.	.	Atlas-SNP
LRRC24	441381	hgsc.bcm.edu	hg19	8	145748075	145748075	+	Silent	SNP	T	T	C	rs112652028	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LRRC24	NM_001024678	exon5	c.A1326G	p.G442G	CAGCGCTCCCTCC	.	153.0	8.0	64.0	0.0	.	11	.	T|0.986;G|0.014	Atlas-SNP
SLC1A1	6505	hgsc.bcm.edu	hg19	9	4490708	4490708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC1A1	NM_004170	exon1	c.A29G	p.E10G	GATGCGAGTGGAA	.	83.0	4.0	145.0	0.0	.	43	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5920644	5920644	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA2026	NM_001017969	exon8	c.T5352C	p.T1784T	GAGTGAAGTCCGA	.	89.0	5.0	140.0	0.0	.	231	.	.	Atlas-SNP
IFNW1	3467	hgsc.bcm.edu	hg19	9	21141108	21141108	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNW1	NM_002177	exon1	c.G462A	p.L154L	CTCTTTCAGGTAG	.	80.0	4.0	77.0	0.0	.	20	.	.	Atlas-SNP
C9orf72	203228	hgsc.bcm.edu	hg19	9	27548315	27548315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C9orf72	NM_018325	exon11	c.T1365G	p.I455M	TGGTTTAATTTTC	.	61.0	15.0	64.0	0.0	.	48	.	.	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35378361	35378361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	UNC13B	NM_006377	exon16	c.T1886C	p.V629A	TGCAAGTCAGCAA	.	93.0	4.0	109.0	0.0	.	153	.	.	Atlas-SNP
RECK	8434	hgsc.bcm.edu	hg19	9	36052297	36052297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RECK	NM_021111	exon2	c.A136G	p.M46V	AACCAAATGTGCC	.	97.0	4.0	133.0	0.0	.	73	.	.	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	hg19	9	78790032	78790032	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCSK5	NM_006200	exon14	c.A1887G	p.T629T	TGGCACAGAGGAT	.	83.0	4.0	105.0	0.0	.	329	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87475992	87475992	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NTRK2	NM_001018065	exon13	c.A1434G	p.R478R	ATCAAGACAAGGT	.	92.0	4.0	131.0	0.0	.	331	.	.	Atlas-SNP
SEMA4D	10507	hgsc.bcm.edu	hg19	9	92020314	92020314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA4D	NM_006378	exon5	c.A58G	p.T20A	TCGCTGTCCCAAA	.	76.0	4.0	88.0	0.0	.	81	.	.	Atlas-SNP
FAM22F	54754	hgsc.bcm.edu	hg19	9	97080944	97080944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FAM22F	NM_017561	exon7	c.C2074G	p.P692A	TGGCAGGAGAAGG	.	326.0	17.0	352.0	0.0	.	72	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113169740	113169740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SVEP1	NM_153366	exon38	c.T8140C	p.S2714P	CAATTGAAATGCA	.	131.0	7.0	109.0	0.0	.	326	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123738976	123738976	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C5	NM_001735	exon30	c.3864+2T>C	.	AATGTTACCTGGG	.	80.0	4.0	95.0	0.0	.	124	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123776212	123776212	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C5	NM_001735	exon17	c.T2196C	p.C732C	GACGACACAACAT	.	87.0	4.0	129.0	0.0	.	124	.	.	Atlas-SNP
RAB14	51552	hgsc.bcm.edu	hg19	9	123952841	123952841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RAB14	NM_016322	exon4	c.A275G	p.D92G	GTGATATCATAGA	.	70.0	4.0	72.0	0.0	.	14	.	.	Atlas-SNP
OR1L6	392390	hgsc.bcm.edu	hg19	9	125512279	125512279	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR1L6	NM_001004453	exon1	c.C153T	p.Y51Y	CATCTACTCTGAC	.	228.0	45.0	311.0	0.0	.	31	.	.	Atlas-SNP
HSPA5	3309	hgsc.bcm.edu	hg19	9	128000515	128000515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSPA5	NM_005347	exon7	c.T1307C	p.L436P	GGAATCAGTTTGG	.	69.0	4.0	77.0	0.0	.	41	.	.	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	hg19	9	139244074	139244074	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GPSM1	NM_001145638	exon11	c.G1314A	p.W438X	GGACTGGCGGGGG	.	86.0	30.0	115.0	0.0	.	50	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139910249	139910249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCA2	NM_212533	exon23	c.A3482G	p.K1161R	GACAGCTTGCGCT	.	192.0	8.0	247.0	0.0	.	113	.	.	Atlas-SNP
COMMD3-BMI1	0	hgsc.bcm.edu	hg19	10	22616563	22616563	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	BMI1,NS,carcinoma,0,1	.	NM_001204062	exon8	c.T678C	p.V226V	ATTAGTTCCAGGG	.	41.0	3.0	66.0	0.0	.	.	.	.	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	hg19	10	50690818	50690818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ERCC6	NM_000124	exon10	c.G2084T	p.C695F	AACTTTCCCGGGA	.	77.0	6.0	95.0	0.0	.	162	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73567345	73567345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CDH23	NM_022124	exon57	c.A8381G	p.E2794G	ACCGGGAGCGAGA	.	94.0	4.0	105.0	0.0	.	365	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76602779	76602779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001256469	exon3	c.T164C	p.V55A	TCAGTGTTCAGGA	.	101.0	5.0	101.0	0.0	.	.	.	.	Atlas-SNP
KCNMA1	3778	hgsc.bcm.edu	hg19	10	78832856	78832856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCNMA1	NM_001161352	exon14	c.A1748G	p.K583R	GTTACCTTTATGA	.	99.0	5.0	124.0	0.0	.	370	.	.	Atlas-SNP
POLR3A	11128	hgsc.bcm.edu	hg19	10	79752965	79752965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	POLR3A	NM_007055	exon20	c.A2777G	p.D926G	ATGTTGTCCAGAA	.	57.0	4.0	76.0	0.0	.	104	.	.	Atlas-SNP
LDB3	11155	hgsc.bcm.edu	hg19	10	88459081	88459081	+	Missense_Mutation	SNP	C	C	T	rs121908335	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDB3	NM_001171611	exon8	c.C1147T	p.R383C	AAATTGCGCAACT	.	104.0	19.0	72.0	0.0	.	164	.	.	Atlas-SNP
ATAD1	84896	hgsc.bcm.edu	hg19	10	89550120	89550120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATAD1	NM_032810	exon4	c.C329T	p.P110L	TTGATAGGTAAGA	.	79.0	25.0	80.0	0.0	.	32	.	.	Atlas-SNP
PCGF5	84333	hgsc.bcm.edu	hg19	10	93021180	93021180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCGF5	NM_001256549	exon7	c.A572G	p.E191G	CTTATGAGGTAAG	.	82.0	4.0	101.0	0.0	.	29	.	.	Atlas-SNP
CYP2C18	1562	hgsc.bcm.edu	hg19	10	96447910	96447910	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYP2C18	NM_000772	exon3	c.G360A	p.W120X	GAGATGGAAGGAG	.	187.0	57.0	240.0	0.0	.	79	.	.	Atlas-SNP
CNNM2	54805	hgsc.bcm.edu	hg19	10	104679481	104679481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNNM2	NM_199076	exon1	c.T1244C	p.L415P	AACTGCTGGAGAT	.	61.0	4.0	38.0	0.0	.	119	.	.	Atlas-SNP
ADD3	120	hgsc.bcm.edu	hg19	10	111883829	111883829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ADD3	NM_001121	exon10	c.C1198T	p.H400Y	CCTAGGCACAAGA	.	81.0	4.0	87.0	0.0	.	89	.	.	Atlas-SNP
PLEKHA1	59338	hgsc.bcm.edu	hg19	10	124189346	124189346	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PLEKHA1	NM_021622	exon12	c.A1107G	p.K369K	TTCCAAAGTGACT	.	78.0	4.0	73.0	0.0	.	33	.	.	Atlas-SNP
CUZD1	50624	hgsc.bcm.edu	hg19	10	124595749	124595749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CUZD1	NM_022034	exon6	c.T935C	p.L312S	TTTGATAATTTTG	.	94.0	4.0	129.0	0.0	.	82	.	.	Atlas-SNP
INPP5A	3632	hgsc.bcm.edu	hg19	10	134563079	134563079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	INPP5A	NM_005539	exon10	c.T791C	p.V264A	AAGTGGTGAAGCT	.	97.0	4.0	81.0	0.0	.	77	.	.	Atlas-SNP
KRTAP5-1	387264	hgsc.bcm.edu	hg19	11	1606421	1606421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRTAP5-1	NM_001005922	exon1	c.G59C	p.G20A	CCACAGCCGGAGC	.	145.0	62.0	190.0	0.0	.	74	.	.	Atlas-SNP
CARS	833	hgsc.bcm.edu	hg19	11	3059341	3059341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CARS	NM_001014437	exon7	c.A740G	p.E247G	AGTGGCTCTGTGG	.	94.0	4.0	111.0	0.0	.	114	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4127341	4127341	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RRM1	NM_001033	exon3	c.T174C	p.T58T	AGATACTTTGGCT	.	65.0	4.0	71.0	0.0	.	31	.	.	Atlas-SNP
SBF2	81846	hgsc.bcm.edu	hg19	11	9871706	9871706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SBF2	NM_030962	exon22	c.A2670G	p.R890R	CAAGACTCGAAGA	.	99.0	4.0	97.0	0.0	.	146	.	.	Atlas-SNP
PDE3B	5140	hgsc.bcm.edu	hg19	11	14666012	14666012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE3B	NM_000922	exon1	c.T391C	p.F131L	TTCTTCTTCCTCA	.	100.0	4.0	139.0	0.0	.	98	.	.	Atlas-SNP
GTF2H1	2965	hgsc.bcm.edu	hg19	11	18373439	18373439	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF2H1	NM_001142307	exon11	c.A1065G	p.Q355Q	ATTACAAGAGTCC	.	78.0	4.0	89.0	0.0	.	35	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	20066708	20066708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAV2	NM_001244963	exon15	c.C3463G	p.L1155V	GCCGGCCTGGCCA	.	54.0	12.0	78.0	0.0	.	255	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	20066858	20066858	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAV2	NM_001244963	exon15	c.C3613T	p.L1205L	CTAGCCCTAAGCT	.	98.0	4.0	139.0	0.0	.	255	.	.	Atlas-SNP
ANO5	203859	hgsc.bcm.edu	hg19	11	22271814	22271814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO5	NM_213599	exon10	c.T910C	p.F304L	ATCTATTTTGTCT	.	93.0	4.0	151.0	0.0	.	162	.	.	Atlas-SNP
ANO3	63982	hgsc.bcm.edu	hg19	11	26664762	26664762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO3	NM_031418	exon23	c.C2309T	p.A770V	TTGTTGCGGCTTT	.	137.0	41.0	171.0	0.0	.	145	.	.	Atlas-SNP
FBXO3	26273	hgsc.bcm.edu	hg19	11	33790501	33790501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FBXO3	NM_012175	exon3	c.A254G	p.D85G	CCTACATCAGAGT	.	64.0	4.0	110.0	0.0	.	37	.	.	Atlas-SNP
NAT10	55226	hgsc.bcm.edu	hg19	11	34158255	34158255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NAT10	NM_024662	exon20	c.A2095G	p.N699D	AAATTGAATGAGA	.	117.0	5.0	142.0	0.0	.	78	.	.	Atlas-SNP
SPI1	6688	hgsc.bcm.edu	hg19	11	47380449	47380449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPI1	NM_001080547	exon4	c.G442A	p.D148N	CGCCGTCAGACAC	.	124.0	5.0	171.0	0.0	.	21	.	.	Atlas-SNP
OR5I1	10798	hgsc.bcm.edu	hg19	11	55702999	55702999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	OR5I1,NS,chondrosarcoma,0,1	OR5I1	NM_006637	exon1	c.G878A	p.S293N	CTCAAACTATAAA	.	49.0	2.0	81.0	0.0	.	110	.	.	Atlas-SNP
SMTNL1	219537	hgsc.bcm.edu	hg19	11	57310650	57310650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMTNL1	NM_001105565	exon1	c.A535G	p.T179A	GAGGAGACAGGCC	.	77.0	4.0	91.0	0.0	.	68	.	.	Atlas-SNP
BTBD18	643376	hgsc.bcm.edu	hg19	11	57513286	57513286	+	Silent	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BTBD18	NM_001145101	exon3	c.T459G	p.S153S	TCTGGCAGAGATT	.	122.0	5.0	135.0	0.0	.	26	.	.	Atlas-SNP
OR5A1	219982	hgsc.bcm.edu	hg19	11	59211305	59211305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR5A1	NM_001004728	exon1	c.G664T	p.G222C	TCCTATGGTTACA	.	135.0	24.0	201.0	0.0	.	72	.	.	Atlas-SNP
PATL1	219988	hgsc.bcm.edu	hg19	11	59415324	59415324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	PATL1_ENST00000300146,NS,carcinoma,0,2	PATL1	NM_152716	exon15	c.G1796A	p.R599H	AGAATACGGGCAA	.	76.0	4.0	96.0	0.0	.	92	.	.	Atlas-SNP
SNX32	254122	hgsc.bcm.edu	hg19	11	65618862	65618862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SNX32	NM_152760	exon8	c.A773G	p.N258S	AAGTCAACCAGCT	.	51.0	4.0	65.0	0.0	.	46	.	.	Atlas-SNP
ACY3	91703	hgsc.bcm.edu	hg19	11	67412312	67412312	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ACY3	NM_080658	exon7	c.A663G	p.E221E	ATAGGCTTCCATC	.	93.0	4.0	130.0	0.0	.	27	.	.	Atlas-SNP
GAL	51083	hgsc.bcm.edu	hg19	11	68453108	68453108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GAL	NM_015973	exon3	c.T128C	p.L43P	ACCTGCTGGGCCC	.	60.0	4.0	65.0	0.0	.	11	.	.	Atlas-SNP
FCHSD2	9873	hgsc.bcm.edu	hg19	11	72551974	72551974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FCHSD2	NM_014824	exon19	c.T2087C	p.F696S	TGTGAGAATCCTG	.	67.0	4.0	74.0	0.0	.	106	.	.	Atlas-SNP
TYR	7299	hgsc.bcm.edu	hg19	11	88911210	88911210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TYR	NM_000372	exon1	c.T89C	p.L30P	AGAACCTGATGGA	.	100.0	4.0	114.0	0.0	.	130	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93455128	93455128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA1731	NM_033395	exon20	c.A5859G	p.T1953T	TAAAACACTGTCT	.	66.0	4.0	103.0	0.0	.	173	.	.	Atlas-SNP
PGR	5241	hgsc.bcm.edu	hg19	11	100933405	100933405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PGR	NM_000926	exon4	c.T1985C	p.V662A	TTTGGAACGCCCA	.	97.0	4.0	86.0	0.0	.	115	.	.	Atlas-SNP
CWF19L2	143884	hgsc.bcm.edu	hg19	11	107260852	107260852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	CWF19L2_ENST00000282251,right_upper_lobe,carcinoma,0,2	CWF19L2	NM_152434	exon12	c.A1820G	p.K607R	CCCATCTTTTCAT	.	100.0	4.0	132.0	0.0	.	135	.	.	Atlas-SNP
ALKBH8	91801	hgsc.bcm.edu	hg19	11	107403057	107403057	+	Missense_Mutation	SNP	T	T	C	rs202093339	by1000genomes;alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALKBH8	NM_138775	exon8	c.A847G	p.T283A	CTCCTGTCATCAC	.	174.0	7.0	188.0	0.0	.	88	.	T|1.000;A|0.000	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120312472	120312472	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ARHGEF12	NM_015313	exon14	c.T1149C	p.A383A	CCCGGCTCATTTG	.	88.0	4.0	131.0	0.0	.	133	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	121060537	121060537	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TECTA	NM_005422	exon22	c.T6315C	p.P2105P	TGGGCCTCTCTGC	.	88.0	4.0	102.0	0.0	.	329	.	.	Atlas-SNP
KIRREL3	84623	hgsc.bcm.edu	hg19	11	126326264	126326264	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIRREL3	NM_032531	exon7	c.C828T	p.N276N	AGCTGGGTTGGCC	.	96.0	4.0	154.0	0.0	.	183	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133815970	133815970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IGSF9B	NM_014987	exon2	c.A248G	p.D83G	TCAGGGTCCACGT	.	95.0	4.0	128.0	0.0	.	290	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7050122	7050122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATN1	NM_001007026	exon8	c.T3294C	p.T1098T	TGGAACTCTCCCT	.	65.0	5.0	103.0	0.0	.	95	.	.	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	hg19	12	15668472	15668472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PTPRO	NM_002848	exon8	c.G1505A	p.G502D	TTCCTGGTGCCCA	.	95.0	4.0	151.0	0.0	.	148	.	.	Atlas-SNP
ANO6	196527	hgsc.bcm.edu	hg19	12	45803139	45803139	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANO6	NM_001204803	exon17	c.1944-1G>A	.	TTGGCAGCTGGAT	.	53.0	4.0	75.0	0.0	.	163	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50529757	50529757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_147190	exon7	c.G732A	p.M244I	TAGACACATGATC	.	77.0	4.0	107.0	0.0	.	.	.	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	hg19	12	53039093	53039093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KRT2	NM_000423	exon9	c.C1630T	p.R544X	ACTGTCGGCCTCC	.	67.0	13.0	74.0	0.0	.	94	.	.	Atlas-SNP
HOXC13	3229	hgsc.bcm.edu	hg19	12	54338925	54338925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HOXC13	NM_017410	exon2	c.T878C	p.I293T	GGCGCATCTCCGC	.	97.0	4.0	125.0	0.0	.	24	.	.	Atlas-SNP
ITGA7	3679	hgsc.bcm.edu	hg19	12	56091488	56091488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ITGA7	NM_001144996	exon9	c.T1412C	p.V471A	AAGAGCACTGCGG	.	52.0	4.0	86.0	0.0	.	194	.	.	Atlas-SNP
SDR9C7	121214	hgsc.bcm.edu	hg19	12	57327766	57327766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SDR9C7	NM_148897	exon1	c.A280G	p.R94G	TGTCCCTCACCCA	.	50.0	5.0	51.0	0.0	.	31	.	.	Atlas-SNP
C12orf66	144577	hgsc.bcm.edu	hg19	12	64588106	64588106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C12orf66	NM_152440	exon3	c.A854G	p.E285G	TTCATTTCTGAAG	.	97.0	4.0	117.0	0.0	.	28	.	.	Atlas-SNP
MDM1	56890	hgsc.bcm.edu	hg19	12	68696473	68696473	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MDM1	NM_017440	exon12	c.A1899G	p.P633P	AACATGTGGTGGA	.	67.0	4.0	82.0	0.0	.	74	.	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85277565	85277565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC6A15	NM_018057	exon5	c.A829G	p.T277A	AATCTGTAACAGA	.	111.0	5.0	118.0	0.0	.	159	.	.	Atlas-SNP
CCER1	196477	hgsc.bcm.edu	hg19	12	91348442	91348442	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_152638	exon1	c.G78A	p.W26X	GTGTGCCCAGCCA	.	54.0	10.0	86.0	0.0	.	.	.	.	Atlas-SNP
SLC17A8	246213	hgsc.bcm.edu	hg19	12	100813891	100813891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC17A8	NM_139319	exon12	c.T1724C	p.L575P	AAGAGCTGACATC	.	51.0	4.0	49.0	0.0	.	89	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112667541	112667541	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001109662	exon41	c.A6078G	p.G2026G	GAAGCCTCCAAGT	.	88.0	4.0	112.0	0.0	.	.	.	.	Atlas-SNP
TBX5	6910	hgsc.bcm.edu	hg19	12	114793494	114793494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBX5	NM_000192	exon9	c.T1400C	p.V467A	TGCCTGACCACAG	.	67.0	4.0	101.0	0.0	.	188	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120587839	120587839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GCN1L1	NM_006836	exon35	c.T4318C	p.F1440L	AGGCAAAGAGGGC	.	76.0	4.0	94.0	0.0	.	207	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124824721	124824721	+	Missense_Mutation	SNP	C	C	T	rs112797765	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.,32	NCOR2	NM_006312	exon39	c.G5518A	p.G1840R	CACCCCCGCCGCT	.	24.0	2.0	28.0	0.0	.	475	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28942736	28942736	+	Silent	SNP	C	C	T	rs200627038		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLT1	NM_001160030	exon15	c.G2181A	p.S727S	TGATGACGATGAT	.	96.0	24.0	91.0	0.0	.	393	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28942739	28942739	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FLT1	NM_001160030	exon15	c.A2178G	p.S726S	TGACGATGATGAT	.	58.0	31.0	52.0	0.0	.	393	.	.	Atlas-SNP
MRPS31	10240	hgsc.bcm.edu	hg19	13	41323319	41323319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRPS31	NM_005830	exon6	c.A913G	p.T305A	CTTTTGTCCACTG	.	67.0	4.0	146.0	0.0	.	30	.	.	Atlas-SNP
SLC25A30	253512	hgsc.bcm.edu	hg19	13	45978525	45978525	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC25A30	NM_001010875	exon5	c.G330A	p.V110V	ACATATCACATTT	.	42.0	4.0	85.0	0.0	.	24	.	.	Atlas-SNP
OR11G2	390439	hgsc.bcm.edu	hg19	14	20666184	20666184	+	Silent	SNP	C	C	G	rs74538160	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OR11G2	NM_001005503	exon1	c.C690G	p.G230G	AAAAGGCCCTGTG	.	148.0	10.0	185.0	0.0	.	73	.	.	Atlas-SNP
HNRNPC	3183	hgsc.bcm.edu	hg19	14	21699222	21699222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HNRNPC	NM_001077443	exon3	c.T251G	p.L84R	GCAGCCAGGTTAA	.	60.0	14.0	64.0	0.0	.	31	.	.	Atlas-SNP
TGM1	7051	hgsc.bcm.edu	hg19	14	24729674	24729674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TGM1	NM_000359	exon4	c.T739C	p.F247L	GGTTGAAGAGGAT	.	57.0	21.0	90.0	0.0	.	73	.	.	Atlas-SNP
KLHL28	54813	hgsc.bcm.edu	hg19	14	45414969	45414969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHL28	NM_017658	exon2	c.A163G	p.S55G	TGACGCTGGCAAG	.	85.0	5.0	115.0	0.0	.	53	.	.	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	hg19	14	47342700	47342700	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	MDGA2_ENST00000439988,colon,carcinoma,0,3	MDGA2	NM_001113498	exon14	c.T2688C	p.P896P	TCCATAAGGGTTT	.	66.0	3.0	76.0	0.0	.	470	.	.	Atlas-SNP
KLHDC2	23588	hgsc.bcm.edu	hg19	14	50249607	50249607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHDC2	NM_014315	exon13	c.T1157C	p.L386P	ACTGCCTTCCAAA	.	90.0	4.0	112.0	0.0	.	33	.	.	Atlas-SNP
L2HGDH	79944	hgsc.bcm.edu	hg19	14	50769676	50769676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	L2HGDH	NM_024884	exon2	c.T200C	p.L67P	AGGATGAGTGCTC	.	52.0	4.0	45.0	0.0	.	33	.	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	hg19	14	59793328	59793328	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DAAM1	NM_001270520	exon11	c.A1275G	p.T425T	CTCCACACCTTTG	.	145.0	6.0	210.0	0.0	.	95	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64496677	64496677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SYNE2	NM_182914	exon44	c.A6779G	p.D2260G	TCACAGACCTGAA	.	80.0	4.0	119.0	0.0	.	577	.	.	Atlas-SNP
MTHFD1	4522	hgsc.bcm.edu	hg19	14	64898578	64898578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MTHFD1	NM_005956	exon15	c.A1493G	p.K498R	GGTTAAAGGTAAG	.	87.0	4.0	87.0	0.0	.	61	.	.	Atlas-SNP
ENTPD5	957	hgsc.bcm.edu	hg19	14	74443063	74443063	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ENTPD5	NM_001249	exon9	c.A606G	p.G202G	GGAGGCTCCCCCT	.	103.0	5.0	122.0	0.0	.	26	.	.	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	hg19	14	75265057	75265057	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	YLPM1	NM_019589	exon5	c.T3057C	p.S1019S	CTCATCTTACAGA	.	75.0	4.0	83.0	0.0	.	298	.	.	Atlas-SNP
GTF2A1	2957	hgsc.bcm.edu	hg19	14	81670411	81670411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GTF2A1	NM_015859	exon3	c.A170G	p.D57G	AATCCATCTACTG	.	114.0	5.0	178.0	0.0	.	34	.	.	Atlas-SNP
SERPINA4	5267	hgsc.bcm.edu	hg19	14	95033451	95033451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SERPINA4	NM_006215	exon3	c.T794C	p.V265A	GCTCGGTGCTACG	.	118.0	5.0	147.0	0.0	.	81	.	.	Atlas-SNP
SERPINA4	5267	hgsc.bcm.edu	hg19	14	95034486	95034486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SERPINA4	NM_006215	exon4	c.A944G	p.E315G	AGCTAGAGTTGCA	.	68.0	4.0	103.0	0.0	.	81	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101350675	101350675	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RTL1	NM_001134888	exon1	c.C451G	p.Q151E	GCTCTTGAGGAGT	.	134.0	6.0	188.0	0.0	.	120	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101350676	101350676	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RTL1	NM_001134888	exon1	c.T450A	p.P150P	CTCTTGAGGAGTC	.	134.0	6.0	186.0	0.0	.	120	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101351059	101351059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RTL1	NM_001134888	exon1	c.A67G	p.M23V	ACTCCATTTGTTT	.	72.0	4.0	87.0	0.0	.	120	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102515840	102515840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DYNC1H1	NM_001376	exon75	c.T13436C	p.V4479A	AGTGGGTGTCCGA	.	116.0	5.0	138.0	0.0	.	395	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105407781	105407781	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AHNAK2	NM_138420	exon7	c.A14007G	p.E4669E	AACAGATTCCACA	.	74.0	4.0	124.0	0.0	.	719	.	.	Atlas-SNP
EXD1	161829	hgsc.bcm.edu	hg19	15	41483691	41483691	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EXD1	NM_152596	exon8	c.A639G	p.Q213Q	GGCTACTTGAAGG	.	83.0	4.0	57.0	0.0	.	52	.	.	Atlas-SNP
ZFP106	64397	hgsc.bcm.edu	hg19	15	42742306	42742306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFP106	NM_022473	exon2	c.T2095G	p.L699V	CATCCAAGCTAGC	.	106.0	26.0	104.0	0.0	.	117	.	.	Atlas-SNP
GATM	2628	hgsc.bcm.edu	hg19	15	45658283	45658283	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GATM	NM_001482	exon6	c.T939C	p.P313P	AATACCAGGTCCA	.	84.0	4.0	117.0	0.0	.	34	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48056059	48056059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA6D	NM_153617	exon10	c.C760T	p.R254C	TATTCCCGCGTGG	.	116.0	37.0	125.0	0.0	.	322	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49083508	49083508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CEP152	NM_014985	exon8	c.A898G	p.R300G	TCTCTCTTTCTTT	.	72.0	4.0	101.0	0.0	.	145	.	.	Atlas-SNP
MYO5C	55930	hgsc.bcm.edu	hg19	15	52548896	52548896	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYO5C	NM_018728	exon11	c.C1335T	p.N445N	AAAGCTGTTCACA	.	80.0	4.0	93.0	0.0	.	162	.	.	Atlas-SNP
FAM214A	56204	hgsc.bcm.edu	hg19	15	52874394	52874394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_019600	exon13	c.A3188G	p.Y1063C	TCAGTGTAAGATT	.	99.0	4.0	105.0	0.0	.	.	.	.	Atlas-SNP
GLCE	26035	hgsc.bcm.edu	hg19	15	69553621	69553621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GLCE	NM_015554	exon4	c.T782C	p.V261A	CGAATGTGGCTGA	.	90.0	4.0	125.0	0.0	.	48	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73615722	73615722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCN4	NM_005477	exon8	c.A2712G	p.I904M	CCCGGCTATGGTG	.	94.0	4.0	118.0	0.0	.	150	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	hg19	15	74709008	74709008	+	Missense_Mutation	SNP	C	C	T	rs140707085	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SEMA7A	NM_003612	exon7	c.G709A	p.D237N	TGTCATCGTAAGC	.	248.0	19.0	315.0	0.0	.	58	.	C|1.000;T|0.000	Atlas-SNP
CYP1A1	1543	hgsc.bcm.edu	hg19	15	75015354	75015354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CYP1A1	NM_000499	exon2	c.T85C	p.S29P	GTCTTGAGGCCCT	.	91.0	4.0	123.0	0.0	.	60	.	.	Atlas-SNP
FAM219B	57184	hgsc.bcm.edu	hg19	15	75197055	75197055	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_020447	exon5	c.381-2A>G	.	CATCACTAGGAGA	.	68.0	4.0	87.0	0.0	.	.	.	.	Atlas-SNP
TBC1D2B	23102	hgsc.bcm.edu	hg19	15	78305187	78305187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TBC1D2B	NM_144572	exon9	c.G2248C	p.G750R	AGTAGCCGATATC	.	232.0	16.0	234.0	0.0	.	104	.	.	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91292851	91292851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BLM	NM_000057	exon3	c.T353C	p.V118A	AGGAAGTTGTATG	.	83.0	4.0	67.0	0.0	.	122	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94841577	94841577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MCTP2	NM_001159643	exon1	c.T83C	p.V28A	AGAAGGTGAAAAA	.	96.0	4.0	63.0	0.0	.	122	.	.	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	hg19	16	10729745	10729745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TEKT5	NM_144674	exon6	c.A1117G	p.T373A	TGATGGTGTTCTC	.	99.0	4.0	114.0	0.0	.	66	.	.	Atlas-SNP
C16orf62	57020	hgsc.bcm.edu	hg19	16	19619534	19619534	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	C16orf62	NM_020314	exon10	c.C1086T	p.A362A	CACGGCCAAGGAA	.	98.0	4.0	127.0	0.0	.	164	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21011556	21011556	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH3	NM_017539	exon43	c.G6411A	p.V2137V	AAACACCACTGCT	.	92.0	4.0	122.0	0.0	.	1142	.	.	Atlas-SNP
OTOA	146183	hgsc.bcm.edu	hg19	16	21716543	21716543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OTOA	NM_144672	exon11	c.T1034C	p.V345A	CCACTGTGGCTCA	.	103.0	5.0	103.0	0.0	.	144	.	.	Atlas-SNP
SCNN1G	6340	hgsc.bcm.edu	hg19	16	23223435	23223435	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SCNN1G	NM_001039	exon8	c.A1257G	p.A419A	TCCTGCAGCCAAC	.	68.0	4.0	77.0	0.0	.	82	.	.	Atlas-SNP
DCTN5	84516	hgsc.bcm.edu	hg19	16	23654296	23654296	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DCTN5	NM_001199011	exon2	c.T69C	p.S23S	AGTCAGTCGCCAG	.	64.0	4.0	73.0	0.0	.	21	.	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	hg19	16	57065327	57065327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	NLRC5,rectum,carcinoma,0,1	NLRC5	NM_032206	exon10	c.T2429C	p.L810P	CGGACCTCATCTT	.	222.0	12.0	231.0	1.0	.	186	.	.	Atlas-SNP
SLC38A7	55238	hgsc.bcm.edu	hg19	16	58712696	58712696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC38A7	NM_018231	exon4	c.A373G	p.K125E	TCAGCTTGCCACA	.	84.0	4.0	124.0	0.0	.	26	.	.	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61687550	61687550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	CDH8,NS,malignant_melanoma,0,3	CDH8	NM_001796	exon12	c.G2362A	p.E788K	AGAGTTCGCCCAG	.	138.0	30.0	179.0	0.0	.	273	.	.	Atlas-SNP
ZDHHC1	29800	hgsc.bcm.edu	hg19	16	67434899	67434899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZDHHC1	NM_013304	exon4	c.T389C	p.V130A	TCAATGACATGTG	.	148.0	6.0	176.0	0.0	.	28	.	.	Atlas-SNP
CIRH1A	84916	hgsc.bcm.edu	hg19	16	69187545	69187545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CIRH1A	NM_032830	exon9	c.A1061G	p.H354R	CTCATCACTTAGA	.	89.0	4.0	97.0	0.0	.	48	.	.	Atlas-SNP
NFAT5	10725	hgsc.bcm.edu	hg19	16	69718852	69718852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NFAT5	NM_138713	exon11	c.T1753C	p.S585P	CCTTGCTCTTTTG	.	103.0	5.0	103.0	0.0	.	184	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74528659	74528659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GLG1	NM_001145667	exon6	c.A1049G	p.K350R	CTTACCTTTTCAC	.	91.0	4.0	76.0	0.0	.	106	.	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76523688	76523688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CNTNAP4	NM_138994	exon12	c.T1769C	p.M590T	CCAGCATGGAGCA	.	109.0	5.0	145.0	0.0	.	600	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	3920939	3920939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZZEF1	NM_015113	exon48	c.A7727G	p.Q2576R	CTCTGCTGCAGTT	.	98.0	4.0	130.0	0.0	.	195	.	.	Atlas-SNP
ZNF232	7775	hgsc.bcm.edu	hg19	17	5009622	5009622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF232	NM_014519	exon5	c.T832C	p.W278R	GGGACCACCTCAG	.	78.0	4.0	80.0	0.0	.	42	.	.	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	hg19	17	5235279	5235279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RABEP1	NM_004703	exon3	c.G199A	p.A67T	CAAGCTGCACAAG	.	41.0	4.0	38.0	0.0	.	59	.	.	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	hg19	17	7416450	7416450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	POLR2A	NM_000937	exon29	c.T4867C	p.S1623P	TCCTACTCCCCTA	.	190.0	9.0	213.0	0.0	.	157	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7804563	7804563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CHD3	NM_001005271	exon20	c.A3299G	p.E1100G	TTCAGGAGTCCCC	.	71.0	4.0	64.0	0.0	.	169	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11757692	11757692	+	Missense_Mutation	SNP	G	G	A	rs368607572		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DNAH9	NM_001372	exon50	c.G9880A	p.A3294T	GCCACCGCGGACC	.	115.0	44.0	113.0	0.0	.	695	.	.	Atlas-SNP
COX10	1352	hgsc.bcm.edu	hg19	17	13972945	13972945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	COX10	NM_001303	exon1	c.T23C	p.L8P	ACACTCTCTCCTC	.	137.0	7.0	127.0	0.0	.	36	.	.	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	15973506	15973506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOR1	NM_001190440	exon30	c.T4534C	p.S1512P	TGGGTGAGCCTCT	.	101.0	5.0	116.0	0.0	.	240	.	.	Atlas-SNP
SMCR8	140775	hgsc.bcm.edu	hg19	17	18219495	18219495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SMCR8	NM_144775	exon1	c.G392A	p.G131D	AGGAGGGCGCCTT	.	61.0	4.0	42.0	0.0	.	62	.	.	Atlas-SNP
PSMD3	5709	hgsc.bcm.edu	hg19	17	38142922	38142922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PSMD3	NM_002809	exon3	c.T506C	p.L169P	TCCAACTCCTCGT	.	97.0	4.0	124.0	0.0	.	56	.	.	Atlas-SNP
BECN1	8678	hgsc.bcm.edu	hg19	17	40970263	40970263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BECN1	NM_003766	exon7	c.A659G	p.E220G	AGTCTCTCAGCCT	.	199.0	8.0	245.0	0.0	.	23	.	.	Atlas-SNP
SPAG9	9043	hgsc.bcm.edu	hg19	17	49043633	49043633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SPAG9	NM_001130528	exon30	c.A3966G	p.X1322W	ATGGGCTCACTCA	.	85.0	5.0	93.0	0.0	.	151	.	.	Atlas-SNP
MRPS23	51649	hgsc.bcm.edu	hg19	17	55918549	55918549	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRPS23	NM_016070	exon3	c.T288C	p.C96C	CCGTTGACAGGTA	.	64.0	4.0	72.0	0.0	.	16	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60050201	60050201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MED13	NM_005121	exon17	c.T3854C	p.L1285P	GGCTGAAGAGAGA	.	81.0	4.0	75.0	0.0	.	181	.	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	hg19	17	60766239	60766239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MRC2	NM_006039	exon23	c.C3252A	p.S1084R	GCACAGCCCCTCA	.	124.0	42.0	127.0	0.0	.	126	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65338310	65338310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PSMD12	NM_002816	exon10	c.T1153C	p.S385P	CAACAGATAGATC	.	80.0	4.0	90.0	0.0	.	32	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65971931	65971931	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	BPTF_ENST00000335221,caecum,carcinoma,0,2	BPTF	NM_182641	exon27	c.A8583G	p.E2861E	TTATGAAAAGCTG	.	56.0	3.0	74.0	0.0	.	415	.	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67096941	67096941	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCA6	NM_080284	exon22	c.T3009C	p.P1003P	TACAAGAGGAAAT	.	89.0	4.0	125.0	0.0	.	210	.	.	Atlas-SNP
ABCA10	10349	hgsc.bcm.edu	hg19	17	67190540	67190540	+	Missense_Mutation	SNP	G	G	A	rs200155538	bycluster	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.,5	ABCA10	NM_080282	exon13	c.C1331T	p.S444F	GAAACAGACAATC	.	44.0	8.0	39.0	0.0	.	209	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78280933	78280933	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RNF213	NM_001256071	exon13	c.T2433C	p.V811V	GGATGTTCAGGAT	.	121.0	5.0	93.0	0.0	.	766	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78346832	78346832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RNF213	NM_001256071	exon49	c.T12809C	p.V4270A	TCCGGGTGGAGAA	.	95.0	6.0	135.0	0.0	.	766	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3090725	3090725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYOM1	NM_003803	exon27	c.G3940A	p.G1314R	ACGTTCCCTCATC	.	165.0	30.0	216.0	0.0	.	192	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9254527	9254527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ANKRD12	NM_015208	exon9	c.T1262C	p.V421A	CTAGGGTCTTATA	.	76.0	4.0	80.0	0.0	.	167	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	hg19	18	30517978	30517978	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_001105528	exon22	c.T2601C	p.G867G	TGCTTAACCATCG	.	87.0	4.0	144.0	0.0	.	.	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43496028	43496028	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EPG5	NM_020964	exon19	c.T3528C	p.A1176A	CTGAAAAGCTGCT	.	55.0	4.0	82.0	0.0	.	199	.	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47402100	47402100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MYO5B	NM_001080467	exon26	c.T3494C	p.V1165A	AGCTGCACTTGCA	.	98.0	4.0	155.0	0.0	.	178	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	53018227	53018227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TCF4	NM_001243226	exon8	c.T683C	p.L228P	CCAAGGAGACTCT	.	100.0	4.0	125.0	0.0	.	178	.	.	Atlas-SNP
MED16	10025	hgsc.bcm.edu	hg19	19	873468	873468	+	Missense_Mutation	SNP	A	A	G	rs367567945	alternate_allele	TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	MED16	NM_005481	exon11	c.T1886C	p.L629P	CTGGCCAGCAGGT	.	88.0	5.0	66.0	0.0	.	61	.	.	Atlas-SNP
SBNO2	22904	hgsc.bcm.edu	hg19	19	1112458	1112458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SBNO2	NM_014963	exon21	c.C2458T	p.R820C	GCACGCGGCGCCG	.	49.0	15.0	104.0	0.0	.	112	.	.	Atlas-SNP
ZNF562	54811	hgsc.bcm.edu	hg19	19	9768758	9768758	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF562	NM_001130032	exon4	c.T168C	p.A56A	CAGTAAAGCCCAC	.	69.0	4.0	142.0	0.0	.	72	.	.	Atlas-SNP
OLFM2	93145	hgsc.bcm.edu	hg19	19	9965137	9965137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	OLFM2	NM_058164	exon6	c.G1090A	p.G364S	GGTAGCCGGTGTC	.	86.0	4.0	126.0	0.0	.	42	.	.	Atlas-SNP
PDE4A	5141	hgsc.bcm.edu	hg19	19	10572599	10572599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PDE4A	NM_001111307	exon13	c.T1667C	p.L556P	CTGACCTGAAGAC	.	30.0	4.0	50.0	0.0	.	236	.	.	Atlas-SNP
ATG4D	84971	hgsc.bcm.edu	hg19	19	10659671	10659671	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ATG4D	NM_032885	exon6	c.T927C	p.G309G	ACTGGGTGGCGAG	.	117.0	5.0	138.0	0.0	.	47	.	.	Atlas-SNP
HSH2D	84941	hgsc.bcm.edu	hg19	19	16268213	16268213	+	Missense_Mutation	SNP	A	A	G	rs375451762		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HSH2D	NM_032855	exon9	c.A667G	p.S223G	TAAAAAAGCCACC	.	163.0	7.0	93.0	0.0	.	16	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23556628	23556628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF91	NM_003430	exon3	c.T169C	p.S57P	GCTTAGAGAGAGC	.	71.0	4.0	117.0	0.0	.	349	.	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31769301	31769301	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TSHZ3	NM_020856	exon2	c.G1398C	p.L466L	CACATTCAGTTTT	.	177.0	34.0	191.0	0.0	.	549	.	.	Atlas-SNP
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34818735	34818735	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KIAA0355	NM_014686	exon5	c.C906T	p.F302F	CGGCTTCCACCTG	.	88.0	13.0	99.0	0.0	.	105	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36258938	36258938	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.,11	C19orf55	NM_001039887	exon9	c.1190+1G>A	.	TGCCCAGGGCCGC	.	16.0	2.0	16.0	0.0	.	39	.	.	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	hg19	19	36330220	36330220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NPHS1	NM_004646	exon22	c.A3028G	p.R1010G	AGACCCTGTATCT	.	76.0	4.0	88.0	0.0	.	165	.	.	Atlas-SNP
SAMD4B	55095	hgsc.bcm.edu	hg19	19	39868421	39868421	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SAMD4B	NM_018028	exon10	c.C1401G	p.A467A	CGTCGCCGACGGA	.	78.0	12.0	88.0	0.0	.	48	.	.	Atlas-SNP
ADCK4	79934	hgsc.bcm.edu	hg19	19	41220249	41220249	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ADCK4	NM_001142555	exon3	c.A156G	p.R52R	CAGGCCTCTCCCA	.	52.0	4.0	60.0	0.0	.	92	.	.	Atlas-SNP
LMTK3	114783	hgsc.bcm.edu	hg19	19	49003158	49003158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LMTK3	NM_001080434	exon12	c.T1255C	p.S419P	AGCAGGACTGAAG	.	100.0	4.0	116.0	0.0	.	125	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HRC	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	175.0	15.0	126.0	0.0	.	85	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657920	49657920	+	Missense_Mutation	SNP	C	C	T	rs200730671		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HRC	NM_002152	exon1	c.G575A	p.G192E	TCTTCTCCTTCAT	.	177.0	13.0	130.0	0.0	.	85	.	.	Atlas-SNP
ZNF28	7576	hgsc.bcm.edu	hg19	19	53303761	53303761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF28	NM_006969	exon4	c.A1337G	p.K446R	AAAACCTTGCCAC	.	70.0	4.0	53.0	0.0	.	191	.	.	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	hg19	19	54759311	54759311	+	Missense_Mutation	SNP	C	C	T	rs376519844		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LILRB5	NM_001081442	exon5	c.G790A	p.V264I	CCTGGACGAGGTC	.	228.0	28.0	217.0	0.0	.	176	.	.	Atlas-SNP
ZNF71	58491	hgsc.bcm.edu	hg19	19	57133319	57133319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZNF71	NM_021216	exon3	c.G664A	p.A222T	GGCAAGGCCTTCC	.	118.0	18.0	100.0	0.0	.	69	.	.	Atlas-SNP
DEFB126	81623	hgsc.bcm.edu	hg19	20	126206	126206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	DEFB126	NM_030931	exon2	c.T209C	p.V70A	ATCCTGTTTTCTG	.	134.0	6.0	109.0	0.0	.	52	.	.	Atlas-SNP
SIRPB2	284759	hgsc.bcm.edu	hg19	20	1460431	1460431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIRPB2	NM_001122962	exon2	c.C365T	p.T122I	GTTCCAGTGTGCT	.	217.0	61.0	233.0	0.0	.	50	.	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	hg19	20	5903684	5903684	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CHGB	NM_001819	exon4	c.T894C	p.S298S	AGGGAGTCTTCCC	.	72.0	4.0	79.0	0.0	.	112	.	.	Atlas-SNP
FERMT1	55612	hgsc.bcm.edu	hg19	20	6057869	6057869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FERMT1	NM_017671	exon15	c.A1985T	p.E662V	AGTGTTTCATTCT	.	137.0	23.0	167.0	0.0	.	106	.	.	Atlas-SNP
TPX2	22974	hgsc.bcm.edu	hg19	20	30366726	30366726	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TPX2	NM_012112	exon10	c.T993C	p.V331V	GCAAGTTGAAGAC	.	92.0	4.0	96.0	0.0	.	61	.	.	Atlas-SNP
BPIFB3	359710	hgsc.bcm.edu	hg19	20	31644372	31644372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	.	NM_182658	exon2	c.A149G	p.E50G	TTGGGGAGCCCAT	.	91.0	4.0	101.0	0.0	.	.	.	.	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42157387	42157387	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	L3MBTL1	NM_032107	exon8	c.885+2T>C	.	AGGACGTGAGTTG	.	118.0	5.0	146.0	0.0	.	105	.	.	Atlas-SNP
IFT52	51098	hgsc.bcm.edu	hg19	20	42252541	42252541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFT52	NM_016004	exon10	c.A779G	p.Y260C	CTGACTACATGAT	.	94.0	4.0	126.0	0.0	.	40	.	.	Atlas-SNP
PCIF1	63935	hgsc.bcm.edu	hg19	20	44574501	44574501	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCIF1	NM_022104	exon12	c.C1320T	p.S440S	GGTCAGCCGCAAC	.	90.0	4.0	112.0	0.0	.	51	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46271003	46271003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NCOA3	NM_181659	exon17	c.A3127G	p.N1043D	CCTTCCAACCTGG	.	40.0	4.0	72.0	0.0	.	156	.	.	Atlas-SNP
RAE1	8480	hgsc.bcm.edu	hg19	20	55949682	55949682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RAE1	NM_003610	exon11	c.A845G	p.H282R	CGTTCCATCCTGT	.	79.0	4.0	80.0	0.0	.	54	.	.	Atlas-SNP
SLC2A4RG	56731	hgsc.bcm.edu	hg19	20	62373927	62373927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC2A4RG	NM_020062	exon6	c.G919A	p.V307I	AGCACCGTTGCTA	.	39.0	6.0	40.0	0.0	.	20	.	.	Atlas-SNP
NRIP1	8204	hgsc.bcm.edu	hg19	21	16339695	16339695	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	NRIP1	NM_003489	exon4	c.A819G	p.E273E	ATGGGCTTCGCTT	.	99.0	4.0	105.0	0.0	.	103	.	.	Atlas-SNP
IL10RB	3588	hgsc.bcm.edu	hg19	21	34660496	34660496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IL10RB	NM_000628	exon6	c.T734C	p.L245P	CCTTGCTGTGGTG	.	93.0	4.0	99.0	0.0	.	37	.	.	Atlas-SNP
IFNGR2	3460	hgsc.bcm.edu	hg19	21	34805151	34805151	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IFNGR2	NM_005534	exon6	c.A852G	p.P284P	CACTCCACCAAGC	.	97.0	5.0	99.0	0.0	.	30	.	.	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	hg19	21	38095410	38095410	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SIM2	NM_005069	exon5	c.C522A	p.G174G	CGCGGGCCTGACC	.	58.0	14.0	80.0	0.0	.	55	.	.	Atlas-SNP
CBS	875	hgsc.bcm.edu	hg19	21	44480560	44480560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CBS	NM_000071	exon12	c.G1136A	p.R379Q	TAGTTCCGCACTG	.	54.0	4.0	58.0	0.0	.	85	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47817283	47817283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	PCNT	NM_006031	exon22	c.T4321G	p.S1441A	TTGGAGTCTGAGT	.	78.0	4.0	95.0	0.0	.	283	.	.	Atlas-SNP
EIF4ENIF1	56478	hgsc.bcm.edu	hg19	22	31846327	31846327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	EIF4ENIF1	NM_019843	exon11	c.T1532C	p.L511S	GACATCAAATGGC	.	83.0	4.0	99.0	0.0	.	80	.	.	Atlas-SNP
KCTD17	79734	hgsc.bcm.edu	hg19	22	37453518	37453518	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KCTD17	NM_024681	exon4	c.C492T	p.G164G	TGATGGCTGGCGC	.	46.0	4.0	75.0	0.0	.	17	.	.	Atlas-SNP
KLHDC7B	113730	hgsc.bcm.edu	hg19	22	50987911	50987911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	KLHDC7B	NM_138433	exon1	c.T1316C	p.F439S	GCACCTTCCCTGT	.	73.0	4.0	97.0	0.0	.	39	.	.	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	hg19	X	12904278	12904278	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TLR7	NM_016562	exon3	c.A651G	p.T217T	TGTCACAGCCGTC	.	97.0	4.0	134.0	0.0	.	125	.	.	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	hg19	X	12905003	12905003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	TLR7	NM_016562	exon3	c.T1376C	p.V459A	CCCAGGTCCTGGA	.	69.0	4.0	69.0	0.0	.	125	.	.	Atlas-SNP
ZFX	7543	hgsc.bcm.edu	hg19	X	24197777	24197777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFX	NM_003410	exon5	c.A536T	p.E179V	CAGAAGAAGTATT	.	89.0	7.0	129.0	0.0	.	61	.	.	Atlas-SNP
ZFX	7543	hgsc.bcm.edu	hg19	X	24197779	24197779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ZFX	NM_003410	exon5	c.G538T	p.V180L	GAAGAAGTATTGG	.	88.0	6.0	130.0	0.0	.	61	.	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53310699	53310699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	IQSEC2	NM_015075	exon1	c.A5G	p.E2G	GGGGGCTCCATGG	.	113.0	6.0	211.0	0.0	.	195	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765176	66765176	+	Missense_Mutation	SNP	A	A	T	rs62636527		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AR	NM_000044	exon1	c.A188T	p.Q63L	AGCAGCAGCAGCA	.	62.0	10.0	72.0	0.0	.	249	.	A|0.982;T|0.018	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765179	66765179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	AR	NM_000044	exon1	c.A191T	p.Q64L	AGCAGCAGCAGCA	.	69.0	14.0	69.0	0.0	.	249	.	.	Atlas-SNP
STARD8	9754	hgsc.bcm.edu	hg19	X	67936251	67936251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	STARD8	NM_001142503	exon5	c.A275G	p.E92G	AACTGGAGGTTCA	.	94.0	4.0	117.0	0.0	.	282	.	.	Atlas-SNP
ABCB7	22	hgsc.bcm.edu	hg19	X	74295254	74295254	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ABCB7	NM_004299	exon6	c.T801C	p.A267A	TACCAAAGCACTC	.	137.0	6.0	157.0	0.0	.	69	.	.	Atlas-SNP
HMGN5	79366	hgsc.bcm.edu	hg19	X	80371833	80371833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HMGN5	NM_030763	exon6	c.A137G	p.K46R	TTTGTCTTCATTT	.	81.0	4.0	102.0	0.0	.	29	.	.	Atlas-SNP
BHLHB9	80823	hgsc.bcm.edu	hg19	X	102004756	102004756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	BHLHB9	NM_001142530	exon2	c.T833C	p.I278T	AGCCTATCCCTGA	.	87.0	4.0	122.0	0.0	.	60	.	.	Atlas-SNP
RBM41	55285	hgsc.bcm.edu	hg19	X	106358785	106358785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	RBM41	NM_001171080	exon4	c.A320G	p.K107R	TTTGTCTTCTGAA	.	99.0	4.0	127.0	0.0	.	34	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108619161	108619161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GUCY2F	NM_001522	exon19	c.A3294G	p.K1098K	TTCTGCTTTTCTT	.	113.0	5.0	155.0	0.0	.	178	.	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	hg19	X	110490683	110490683	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	CAPN6	NM_014289	exon12	c.T1656C	p.S552S	GACAGGAGAACGG	.	113.0	5.0	148.0	0.0	.	120	.	.	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	hg19	X	153225829	153225829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	HCFC1	NM_005334	exon7	c.T941C	p.L314P	TCCTCCAGTGTAT	.	124.0	5.0	177.0	0.0	.	284	.	.	Atlas-SNP
LDOC1	23641	hgsc.bcm.edu	hg19	X	140270987	140270987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	LDOC1	NM_012317	exon1	c.221delA	p.Y74fs	.	.	75.0	28.0	95.0	0.0	.	26	.	.	Atlas-Indel,Pindel
GNB1	2782	hgsc.bcm.edu	hg19	1	1720616	1720617	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	GNB1	NM_002074	exon10	c.792_793insA	p.Y264_S265delinsX	.	.	151.0	61.0	196.0	0.0	.	39	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74283258	74283259	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	ALB	NM_000477	exon11	c.1299_1300del	p.433_434del	.	.	97.0	15.0	105.0	0.0	.	132	.	.	Atlas-Indel,Pindel
FTCD	10841	hgsc.bcm.edu	hg19	21	47575400	47575401	+	In_Frame_Ins	INS	-	-	CCATAA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	FTCD	NM_206965	exon1	c.38_39insTTATGG	p.E13delinsVME	.	.	82.0	11.0	100.0	0.0	.	59	.	.	Atlas-Indel,Pindel
SLC16A4	9122	hgsc.bcm.edu	hg19	1	110919677	110919678	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1137_1138insAG	p.T379fs	.	.	98.0	32.0	145.0	0.0	.	47	.	.	Atlas-INDEL
SLC16A4	9122	hgsc.bcm.edu	hg19	1	110919678	110919679	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1136_1137insT	p.T379fs	.	.	98.0	32.0	147.0	0.0	.	47	.	.	Atlas-INDEL
SLC16A4	9122	hgsc.bcm.edu	hg19	1	110919681	110919682	+	In_Frame_Ins	INS	-	-	TGA	novel		TCGA-DD-A39X-01A-11D-A20W-10	TCGA-DD-A39X-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0d48a532-df89-439c-8c4f-4b284cfdbb79	c27b95f8-bb8d-429a-b193-81f1caf006ee	.	SLC16A4	NM_004696	exon7	c.1133_1134insTCA	p.I378delinsII	.	.	96.0	29.0	0.0	0.0	.	47	.	.	Pindel
