Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1887022	1887022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1751	NM_001080484	exon18	c.T2284C	p.S762P	CCTAGGAAAATTC	.	179.0	8.0	95.0	0.0	.	92	.	.	Atlas-SNP
DDI2	84301	hgsc.bcm.edu	hg19	1	15959967	15959967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDI2	NM_032341	exon4	c.A539G	p.Q180R	AGCAGCAGGACCG	.	118.0	5.0	67.0	0.0	.	38	.	.	Atlas-SNP
CELA3B	23436	hgsc.bcm.edu	hg19	1	22310726	22310726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CELA3B,NS,carcinoma,0,1	CELA3B	NM_007352	exon6	c.G544C	p.V182L	CTGCCGGTGGTGG	.	282.0	0.0	184.0	1.0	.	24	.	.	Atlas-SNP
RPL11	6135	hgsc.bcm.edu	hg19	1	24022333	24022333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPL11	NM_000975	exon5	c.A442G	p.T148A	CGCAGGACAGGCT	.	165.0	7.0	88.0	0.0	.	21	.	.	Atlas-SNP
YTHDF2	51441	hgsc.bcm.edu	hg19	1	29069727	29069727	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	YTHDF2	NM_016258	exon4	c.A945G	p.P315P	TAGCCCACCAGTG	.	373.0	48.0	196.0	0.0	.	47	.	.	Atlas-SNP
PUM1	9698	hgsc.bcm.edu	hg19	1	31441332	31441332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PUM1	NM_014676	exon11	c.G1514A	p.R505H	CCTCCACGGAGAA	.	180.0	22.0	87.0	0.0	.	107	.	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	hg19	1	34643426	34643426	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1orf94	NM_001134734	exon1	c.T36C	p.G12G	CCTGGGTGGACAG	.	119.0	5.0	80.0	0.0	.	156	.	.	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	hg19	1	38288327	38288327	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTF1	NM_005955	exon9	c.A1233G	p.T411T	ATTTCCTGTGGAT	.	63.0	4.0	32.0	0.0	.	67	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39908507	39908507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	MACF1_ENST00000361689,NS,carcinoid-endocrine_tumour,0,2	MACF1	NM_012090	exon75	c.C13049A	p.A4350D	TGGAAGCCATGAA	.	186.0	0.0	108.0	1.0	.	909	.	.	Atlas-SNP
MPL	4352	hgsc.bcm.edu	hg19	1	43812586	43812586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MPL	NM_005373	exon8	c.A1289G	p.E430G	CAGGAGAAGGCCA	.	85.0	4.0	39.0	0.0	.	651	.	.	Atlas-SNP
CDCP2	200008	hgsc.bcm.edu	hg19	1	54605317	54605317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDCP2	NM_201546	exon4	c.T1226A	p.M409K	CCATTCATGGGGG	.	137.0	6.0	104.0	0.0	.	52	.	.	Atlas-SNP
SRSF11	9295	hgsc.bcm.edu	hg19	1	70687464	70687464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRSF11	NM_001190987	exon2	c.A145G	p.M49V	GAGCAGATGCGGA	.	80.0	4.0	52.0	0.0	.	68	.	.	Atlas-SNP
ODF2L	57489	hgsc.bcm.edu	hg19	1	86850466	86850466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ODF2L,colon,carcinoma,0,1	ODF2L	NM_001184766	exon4	c.A265G	p.N89D	TCAAATTCAATGC	.	63.0	3.0	47.0	0.0	.	53	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86900229	86900229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLCA2	NM_006536	exon6	c.A773G	p.H258R	GTACCCACAACCA	.	122.0	5.0	75.0	0.0	.	102	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86920818	86920818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLCA2	NM_006536	exon14	c.G2440A	p.D814N	CAAGATGACTTTA	.	100.0	4.0	72.0	0.0	.	102	.	.	Atlas-SNP
LRRC8D	55144	hgsc.bcm.edu	hg19	1	90399470	90399470	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC8D	NM_018103	exon3	c.A843G	p.G281G	GGATGGAGAGCAG	.	111.0	5.0	68.0	0.0	.	78	.	.	Atlas-SNP
FNDC7	163479	hgsc.bcm.edu	hg19	1	109260509	109260509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	FNDC7_ENST00000370017,colon,carcinoma,0,1	FNDC7	NM_001144937	exon3	c.G193T	p.G65W	GAAGACGGGGACA	.	221.0	0.0	147.0	0.0	.	113	.	.	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	hg19	1	150429791	150429791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPRD2	NM_015203	exon8	c.A898G	p.N300D	CGAGTAAACAATT	.	83.0	4.0	68.0	0.0	.	189	.	.	Atlas-SNP
BNIPL	149428	hgsc.bcm.edu	hg19	1	151019162	151019162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BNIPL	NM_138278	exon10	c.A1073G	p.X358W	GGACATAGCACAG	.	122.0	5.0	90.0	0.0	.	45	.	.	Atlas-SNP
SPRR2G	6706	hgsc.bcm.edu	hg19	1	153122487	153122487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRR2G	NM_001014291	exon2	c.G100A	p.E34K	AAGGCTCAGGGCA	.	141.0	75.0	66.0	0.0	.	20	.	.	Atlas-SNP
SCAMP3	10067	hgsc.bcm.edu	hg19	1	155227359	155227359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCAMP3	NM_005698	exon6	c.A607G	p.I203V	AGAGGATAGAAAG	.	283.0	176.0	125.0	0.0	.	33	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158641962	158641962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPTA1	NM_003126	exon11	c.A1375G	p.T459A	GGGCAGTCCAGTT	.	97.0	4.0	69.0	0.0	.	720	.	.	Atlas-SNP
USP21	27005	hgsc.bcm.edu	hg19	1	161130443	161130443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP21	NM_012475	exon2	c.T13C	p.S5P	CAGGCCTCTGAGC	.	91.0	4.0	54.0	0.0	.	63	.	.	Atlas-SNP
FMO4	2329	hgsc.bcm.edu	hg19	1	171310877	171310877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FMO4	NM_002022	exon10	c.T1576C	p.S526P	CTTGCCTCTCTTC	.	150.0	6.0	79.0	0.0	.	64	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	hg19	1	183109548	183109548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAMC1	NM_002293	exon27	c.G4483A	p.A1495T	TCACAGGCTGCTC	.	81.0	4.0	58.0	0.0	.	176	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186319458	186319458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon21	c.A2673C	p.K891N	TAGTTCTTTTGTG	.	234.0	108.0	138.0	0.0	.	441	.	.	Atlas-SNP
C4BPA	722	hgsc.bcm.edu	hg19	1	207317164	207317164	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C4BPA	NM_000715	exon11	c.T1446C	p.A482A	TACAGCTCTGTGT	.	126.0	6.0	94.0	0.0	.	70	.	.	Atlas-SNP
MARK1	4139	hgsc.bcm.edu	hg19	1	220792019	220792019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MARK1	NM_018650	exon9	c.C831T	p.P277P	TATTCCCTTCTAT	.	87.0	4.0	62.0	0.0	.	161	.	.	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	hg19	1	223177971	223177971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DISP1	NM_032890	exon10	c.C3232A	p.R1078S	CTGAGTCGCGTGG	.	237.0	23.0	131.0	0.0	.	145	.	.	Atlas-SNP
ZNF678	339500	hgsc.bcm.edu	hg19	1	227843072	227843072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF678	NM_178549	exon4	c.A1286G	p.E429G	CTGGAGAGAAACC	.	81.0	4.0	45.0	0.0	.	137	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228434396	228434396	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	OBSCN_ENST00000570156,NS,carcinoma,-2,2	OBSCN	NM_001271223	exon14	c.G4201C	p.A1401P	GAGGCTGCGGGCT	.	366.0	0.0	189.0	0.0	.	2142	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228434468	228434468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,2	OBSCN	NM_001271223	exon14	c.G4273C	p.G1425R	GAGGCTGGGGGCC	.	293.0	0.0	158.0	0.0	.	2142	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237711798	237711798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	RYR2,NS,carcinoma,0,1	RYR2	NM_001035	exon26	c.C2974G	p.Q992E	CCATCACAAGAAG	.	248.0	0.0	142.0	0.0	.	1273	.	.	Atlas-SNP
ZNF670	93474	hgsc.bcm.edu	hg19	1	247200789	247200789	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF670	NM_033213	exon4	c.A1132C	p.S378R	GGGAACTGGAACA	.	100.0	5.0	58.0	0.0	.	52	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8872078	8872078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIDINS220	NM_020738	exon30	c.T4088C	p.L1363P	GAATTGAGACTCG	.	109.0	5.0	80.0	0.0	.	136	.	.	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9515031	9515031	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASAP2	NM_001135191	exon17	c.T1704C	p.D568D	TGCTGATGGTGTG	.	69.0	4.0	61.0	0.0	.	91	.	.	Atlas-SNP
ATP6V1C2	245973	hgsc.bcm.edu	hg19	2	10894153	10894153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP6V1C2	NM_001039362	exon4	c.T244C	p.S82P	GAGGACTCAAAGG	.	106.0	6.0	99.0	0.0	.	73	.	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24033288	24033288	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATAD2B	NM_001242338	exon18	c.T2352C	p.A784A	TGCTGGAGCAAGG	.	118.0	5.0	120.0	0.0	.	110	.	.	Atlas-SNP
EFR3B	22979	hgsc.bcm.edu	hg19	2	25354341	25354341	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EFR3B	NM_014971	exon9	c.A954G	p.E318E	GTCGGAAGCCGCG	.	76.0	4.0	46.0	0.0	.	29	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	25966582	25966582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASXL2	NM_018263	exon12	c.A2624G	p.D875G	CTAGCATCTGTCT	.	72.0	4.0	66.0	0.0	.	217	.	.	Atlas-SNP
CENPA	1058	hgsc.bcm.edu	hg19	2	27016084	27016084	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPA	NM_001809	exon4	c.T360C	p.T120T	AGTTACTCTCTTC	.	97.0	5.0	82.0	0.0	.	13	.	.	Atlas-SNP
BRE	9577	hgsc.bcm.edu	hg19	2	28210936	28210936	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRE	NM_199191	exon4	c.A282G	p.P94P	CCTGCCAGACCCC	.	60.0	4.0	45.0	0.0	.	164	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31587070	31587070	+	Missense_Mutation	SNP	A	A	G	rs371816841		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XDH	NM_000379	exon24	c.T2585C	p.V862A	TGGTCCACCTCAA	.	90.0	4.0	93.0	0.0	.	191	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37217794	37217794	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HEATR5B	NM_019024	exon34	c.A5694G	p.P1898P	TACCCATGGGTCG	.	96.0	4.0	98.0	0.0	.	185	.	.	Atlas-SNP
CLHC1	130162	hgsc.bcm.edu	hg19	2	55445059	55445059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152385	exon4	c.A253G	p.I85V	TCTTTATTGTCTC	.	78.0	4.0	95.0	0.0	.	.	.	.	Atlas-SNP
TMEM17	200728	hgsc.bcm.edu	hg19	2	62729911	62729911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM17	NM_198276	exon2	c.G119A	p.S40N	GCCAAACTGGAGA	.	199.0	9.0	207.0	0.0	.	19	.	.	Atlas-SNP
NAGK	55577	hgsc.bcm.edu	hg19	2	71302707	71302707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NAGK	NM_017567	exon7	c.T740C	p.L247P	GGATACTCACTCA	.	96.0	4.0	118.0	0.0	.	34	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71801370	71801370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYSF	NM_001130982	exon31	c.T3313C	p.S1105P	TACGCCTCTCTTT	.	97.0	4.0	66.0	0.0	.	536	.	.	Atlas-SNP
WDR54	84058	hgsc.bcm.edu	hg19	2	74652051	74652051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR54	NM_032118	exon7	c.T584C	p.V195A	TGTGTGTCTGGCG	.	204.0	11.0	186.0	0.0	.	17	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84954804	84954804	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH6	NM_001370	exon61	c.C9984T	p.T3328T	CAATACCACCATT	.	192.0	65.0	222.0	0.0	.	194	.	.	Atlas-SNP
RETSAT	54884	hgsc.bcm.edu	hg19	2	85578072	85578072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RETSAT	NM_017750	exon3	c.A428G	p.Q143R	TCCAGCTGCCCTT	.	158.0	7.0	191.0	0.0	.	56	.	.	Atlas-SNP
MRPS5	64969	hgsc.bcm.edu	hg19	2	95767468	95767468	+	Missense_Mutation	SNP	C	C	A	rs199914429	by1000genomes;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS5	NM_031902	exon8	c.G764T	p.G255V	GAAAAACCTTTAA	.	110.0	23.0	91.0	0.0	.	52	.	C|1.000;G|0.000	Atlas-SNP
IL18RAP	8807	hgsc.bcm.edu	hg19	2	103067460	103067460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL18RAP	NM_003853	exon11	c.A1363G	p.R455G	CTTGAAAGAGATG	.	77.0	4.0	59.0	0.0	.	102	.	.	Atlas-SNP
GCC2	9648	hgsc.bcm.edu	hg19	2	109086500	109086500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GCC2	NM_181453	exon6	c.G715A	p.E239K	TTGCAGGAAGAGC	.	93.0	4.0	86.0	0.0	.	129	.	.	Atlas-SNP
SAP130	79595	hgsc.bcm.edu	hg19	2	128712861	128712861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SAP130_ENST00000357702,NS,carcinoma,0,2	SAP130	NM_001145928	exon16	c.G2199T	p.M733I	AGTCTCCATGGAC	.	190.0	60.0	188.0	0.0	.	169	.	.	Atlas-SNP
ACMSD	130013	hgsc.bcm.edu	hg19	2	135621155	135621155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACMSD	NM_138326	exon5	c.T440C	p.V147A	CCCACGTCAACGA	.	91.0	5.0	94.0	0.0	.	43	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141806696	141806696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRP1B	NM_018557	exon11	c.A1648G	p.I550V	TGGGGATCATGTA	.	186.0	8.0	270.0	0.0	.	1315	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141812812	141812812	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	LRP1B,NS,carcinoma,0,1	LRP1B	NM_018557	exon10	c.T1425C	p.C475C	GACTTCACATGCA	.	89.0	4.0	110.0	1.0	.	1315	.	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	hg19	2	155252538	155252538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALNT13	NM_052917	exon10	c.A1192G	p.R398G	TCAGTCAGAAAAA	.	104.0	5.0	80.0	0.0	.	170	.	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	hg19	2	155295237	155295237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALNT13	NM_052917	exon12	c.A1529G	p.E510G	ATGCTGAGGTATA	.	72.0	4.0	63.0	0.0	.	170	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160229687	160229687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2B	NM_013450	exon27	c.A4082G	p.Y1361C	CTTCTGTACTGAC	.	99.0	4.0	83.0	0.0	.	196	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160732083	160732083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LY75	NM_002349	exon12	c.A1846G	p.S616G	TGAAGCTTCTGCA	.	105.0	5.0	83.0	0.0	.	151	.	.	Atlas-SNP
DPP4	1803	hgsc.bcm.edu	hg19	2	162875361	162875361	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DPP4,NS,carcinoma,0,1	DPP4	NM_001935	exon17	c.1299-1G>A	.	TGGATTCTGTAAA	.	107.0	5.0	94.0	0.0	.	90	.	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	hg19	2	179226415	179226415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL6	NM_001201480	exon14	c.C1235G	p.S412C	TGCATTCTCTTTT	.	234.0	92.0	258.0	0.0	.	178	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179427959	179427959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.A82900G	p.T27634A	GCTTGGTCACTGT	.	321.0	111.0	304.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179500233	179500233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon227	c.G41818A	p.E13940K	TATCTTCTGGCAT	.	165.0	50.0	153.0	0.0	.	18412	.	.	Atlas-SNP
PDE1A	5136	hgsc.bcm.edu	hg19	2	183387041	183387041	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE1A	NM_001258312	exon2	c.A75G	p.G25G	CTGTTCTCCTGTA	.	82.0	4.0	78.0	0.0	.	184	.	.	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	hg19	2	189904144	189904144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL5A2	NM_000393	exon51	c.A3779G	p.D1260G	TTTTTGTCATCAG	.	137.0	8.0	119.0	0.0	.	230	.	.	Atlas-SNP
ANKAR	150709	hgsc.bcm.edu	hg19	2	190569759	190569759	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKAR	NM_144708	exon8	c.T1719C	p.P573P	AACACCTCTACAC	.	85.0	4.0	83.0	0.0	.	184	.	.	Atlas-SNP
GLS	2744	hgsc.bcm.edu	hg19	2	191765310	191765310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLS	NM_014905	exon4	c.T626C	p.V209A	ACATTGTTTTGTT	.	55.0	4.0	63.0	0.0	.	47	.	.	Atlas-SNP
STAT1	6772	hgsc.bcm.edu	hg19	2	191835434	191835434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STAT1	NM_007315	exon25	c.G2248A	p.V750I	TCTATACTGTGTT	.	65.0	5.0	63.0	0.0	.	93	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198281517	198281517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SF3B1	NM_012433	exon6	c.A614G	p.D205G	GTCTGATCAGCTG	.	157.0	7.0	147.0	0.0	.	1038	.	.	Atlas-SNP
ORC2	4999	hgsc.bcm.edu	hg19	2	201778021	201778021	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ORC2	NM_006190	exon17	c.G1644A	p.K548K	TACCTTCTTTGTT	.	77.0	4.0	70.0	0.0	.	48	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204045127	204045127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NBEAL1	NM_001114132	exon42	c.T6400C	p.F2134L	CGACAGTTCCATT	.	89.0	4.0	83.0	0.0	.	266	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210809878	210809878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UNC80	NM_032504	exon45	c.A6956G	p.E2319G	TCTTAGAGCTGGT	.	97.0	6.0	97.0	0.0	.	280	.	.	Atlas-SNP
ABCB6	10058	hgsc.bcm.edu	hg19	2	220075719	220075719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB6	NM_005689	exon15	c.G2080T	p.D694Y	CCTCATCATTCCC	.	149.0	42.0	115.0	0.0	.	76	.	.	Atlas-SNP
ECEL1	9427	hgsc.bcm.edu	hg19	2	233350834	233350834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ECEL1	NM_004826	exon2	c.A530G	p.Q177R	TTGCGCTGGGCCG	.	9.0	5.0	9.0	0.0	.	73	.	.	Atlas-SNP
CHRNG	1146	hgsc.bcm.edu	hg19	2	233408309	233408309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHRNG	NM_005199	exon9	c.T935C	p.L312P	CCTTCCTCCTGGT	.	169.0	7.0	129.0	0.0	.	54	.	.	Atlas-SNP
EIF4E2	9470	hgsc.bcm.edu	hg19	2	233421124	233421124	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4E2	NM_004846	exon2	c.21-2A>G	.	CCATTCAGTTTGA	.	99.0	4.0	107.0	0.0	.	23	.	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240111545	240111545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDAC4	NM_006037	exon4	c.T323C	p.L108P	TCGTGGAGCTGCG	.	87.0	4.0	74.0	0.0	.	127	.	.	Atlas-SNP
SNED1	25992	hgsc.bcm.edu	hg19	2	241988110	241988110	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNED1	NM_001080437	exon10	c.A1431G	p.G477G	CAACGGAGGCAGA	.	121.0	5.0	111.0	0.0	.	76	.	.	Atlas-SNP
MTERFD2	130916	hgsc.bcm.edu	hg19	2	242039228	242039228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTERFD2	NM_182501	exon2	c.A103G	p.T35A	CTGTCGTCCTTCT	.	103.0	5.0	103.0	0.0	.	33	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1367497	1367497	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTN6	NM_014461	exon9	c.947-2A>G	.	TGAAACAGCTCCT	.	66.0	5.0	42.0	0.0	.	245	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	hg19	3	10108949	10108949	+	Silent	SNP	T	T	C	rs201487858		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCD2	NM_001018115	exon26	c.T2442C	p.T814T	GCTCACTCGGTTA	.	115.0	7.0	61.0	0.0	.	253	.	T|0.998;C|0.002	Atlas-SNP
GALNT15	117248	hgsc.bcm.edu	hg19	3	16268877	16268877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_054110	exon10	c.A1790G	p.H597R	TTGTCCACATTCT	.	87.0	4.0	57.0	0.0	.	.	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18427925	18427925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SATB1	NM_002971	exon8	c.C1385A	p.P462H	ATGAGGGGGGCAG	.	191.0	9.0	131.0	0.0	.	96	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19559532	19559532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNH8	NM_144633	exon15	c.A2585G	p.E862G	CAGAGGAGACCAA	.	131.0	7.0	96.0	0.0	.	189	.	.	Atlas-SNP
NEK10	152110	hgsc.bcm.edu	hg19	3	27335088	27335088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NEK10	NM_199347	exon17	c.T1364C	p.L455P	TTAAAGAGTGGTC	.	101.0	5.0	59.0	0.0	.	271	.	.	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	hg19	3	31712394	31712394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	OSBPL10_ENST00000396556,extremity,malignant_melanoma,0,6	OSBPL10	NM_017784	exon9	c.C1808A	p.P603Q	ACCCACGGGATGG	.	197.0	0.0	140.0	0.0	.	160	.	.	Atlas-SNP
OXSR1	9943	hgsc.bcm.edu	hg19	3	38207429	38207429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OXSR1	NM_005109	exon1	c.A62G	p.E21G	TGCAGGAGGTGAT	.	189.0	8.0	130.0	0.0	.	74	.	.	Atlas-SNP
KIF15	56992	hgsc.bcm.edu	hg19	3	44835775	44835775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF15	NM_020242	exon8	c.T706C	p.S236P	TCTAGGTCTCATG	.	165.0	7.0	114.0	0.0	.	103	.	.	Atlas-SNP
PFKFB4	5210	hgsc.bcm.edu	hg19	3	48561220	48561220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PFKFB4	NM_004567	exon11	c.A1136G	p.E379G	TCCAGCTCCATGA	.	198.0	8.0	143.0	0.0	.	39	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	GGGGGTCCAGGAT	.	552.0	46.0	262.0	0.0	.	84	.	.	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	hg19	3	49836290	49836290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDHR4	NM_001007540	exon4	c.T464C	p.L155P	GGGAGGAGCAGAG	.	142.0	7.0	115.0	0.0	.	37	.	.	Atlas-SNP
RBM6	10180	hgsc.bcm.edu	hg19	3	50095987	50095987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM6	NM_005777	exon10	c.T2122C	p.S708P	CTCGACTCCCATG	.	86.0	4.0	51.0	0.0	.	85	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51198017	51198017	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK3	NM_004947	exon12	c.T921C	p.G307G	GAAAGGTCCTCCT	.	127.0	6.0	72.0	0.0	.	397	.	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	hg19	3	57644895	57644895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_152678	exon8	c.A712G	p.T238A	GACATGTGGGAAT	.	94.0	4.0	67.0	0.0	.	.	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78719381	78719381	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ROBO1	NM_002941	exon11	c.T1413C	p.T471T	GACGAAAGTGCCA	.	95.0	4.0	48.0	0.0	.	833	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89480505	89480505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPHA3	NM_005233	exon13	c.C2342G	p.T781R	ATACAACAAGAGT	.	141.0	83.0	121.0	0.0	.	501	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111888153	111888153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_183061	exon24	c.A2942G	p.H981R	TACAAGTGAGTTT	.	84.0	4.0	74.0	0.0	.	.	.	.	Atlas-SNP
SLC15A2	6565	hgsc.bcm.edu	hg19	3	121613348	121613348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC15A2	NM_001145998	exon1	c.T25C	p.S9P	AATGAGTCCAAGG	.	93.0	4.0	68.0	0.0	.	92	.	.	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	hg19	3	123419119	123419119	+	Missense_Mutation	SNP	C	C	G	rs72491150		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	MYLK,bladder,carcinoma,0,1	MYLK	NM_053025	exon18	c.G3196C	p.E1066Q	TGAGTTCTTCTTT	.	163.0	9.0	133.0	2.0	.	224	.	.	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129277345	129277345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLXND1	NM_015103	exon33	c.A5371G	p.I1791V	CGTCGATGTGGTC	.	130.0	6.0	70.0	0.0	.	149	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130300684	130300684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL6A6	NM_001102608	exon8	c.T3827C	p.L1276P	CTCTTCTCAATGC	.	149.0	6.0	88.0	0.0	.	497	.	.	Atlas-SNP
MRPS22	56945	hgsc.bcm.edu	hg19	3	139074572	139074572	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS22	NM_020191	exon7	c.A927G	p.P309P	CCATCCAGATGGC	.	243.0	10.0	154.0	0.0	.	40	.	.	Atlas-SNP
CHST2	9435	hgsc.bcm.edu	hg19	3	142840446	142840446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHST2	NM_004267	exon2	c.T788C	p.L263P	CACCACTCTGCCC	.	120.0	5.0	90.0	0.0	.	67	.	.	Atlas-SNP
AADAC	13	hgsc.bcm.edu	hg19	3	151542580	151542580	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AADAC	NM_001086	exon4	c.A561G	p.G187G	TTCTGGAGATAGT	.	164.0	7.0	105.0	0.0	.	49	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153839867	153839867	+	Missense_Mutation	SNP	T	T	C	rs200926651	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF26	NM_001251962	exon2	c.T86C	p.V29A	ACCAGGTTCTGGG	.	231.0	11.0	146.0	0.0	.	158	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164758754	164758754	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SI	NM_001041	exon18	c.A2133G	p.E711E	TACTGTTTCTCCA	.	83.0	4.0	89.0	0.0	.	500	.	.	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	hg19	3	169099249	169099249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MECOM	NM_004991	exon2	c.G101A	p.G34E	GCTACTCCATCTG	.	151.0	51.0	92.0	0.0	.	216	.	.	Atlas-SNP
LRRIQ4	344657	hgsc.bcm.edu	hg19	3	169540116	169540116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRIQ4	NM_001080460	exon1	c.T407C	p.V136A	CCGTCGTCATCTT	.	94.0	4.0	65.0	0.0	.	68	.	.	Atlas-SNP
DCUN1D1	54165	hgsc.bcm.edu	hg19	3	182665124	182665124	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCUN1D1	NM_020640	exon7	c.604-2A>G	.	TGTTCCTATTTAA	.	63.0	4.0	36.0	0.0	.	27	.	.	Atlas-SNP
MCCC1	56922	hgsc.bcm.edu	hg19	3	182751818	182751818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MCCC1	NM_020166	exon14	c.T1642C	p.S548P	TATACGAGATATT	.	110.0	5.0	67.0	0.0	.	87	.	.	Atlas-SNP
POLR2H	5437	hgsc.bcm.edu	hg19	3	184084588	184084588	+	Missense_Mutation	SNP	T	T	C	rs138482713	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	POLR2H,NS,carcinoma,0,1	POLR2H	NM_006232	exon4	c.T335C	p.L112P	CACGCCTGTAAGT	.	94.0	4.0	88.0	0.0	.	17	.	T|1.000;G|0.000	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195508423	195508423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.C10028T	p.T3343I	ACAGGGGTGGTGT	.	304.0	115.0	159.0	0.0	.	1505	.	.	Atlas-SNP
PIGZ	80235	hgsc.bcm.edu	hg19	3	196674974	196674974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIGZ	NM_025163	exon3	c.C794G	p.A265G	AGGGCTGCCCCAG	.	88.0	5.0	51.0	0.0	.	34	.	.	Atlas-SNP
PIGZ	80235	hgsc.bcm.edu	hg19	3	196674975	196674975	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIGZ	NM_025163	exon3	c.G793C	p.A265P	GGGCTGCCCCAGG	.	88.0	4.0	52.0	0.0	.	34	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	hg19	4	660330	660330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE6B	NM_001145291	exon20	c.A2279G	p.D760G	TGATGGACCGGAA	.	106.0	5.0	71.0	0.0	.	80	.	.	Atlas-SNP
HTRA3	94031	hgsc.bcm.edu	hg19	4	8307696	8307696	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HTRA3	NM_053044	exon9	c.1197-2A>G	.	GTTGGCAGAGGCG	.	96.0	5.0	99.0	0.0	.	39	.	.	Atlas-SNP
FGFBP1	9982	hgsc.bcm.edu	hg19	4	15938186	15938186	+	Missense_Mutation	SNP	T	T	C	rs201240184		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FGFBP1	NM_005130	exon3	c.A70G	p.K24E	TTTTTTTCCCCTC	.	152.0	7.0	145.0	0.0	.	26	.	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	hg19	4	47695047	47695047	+	Missense_Mutation	SNP	C	C	T	rs143738568	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CORIN	NM_006587	exon6	c.G853A	p.G285R	GTTTCCCGGGGAT	.	127.0	48.0	100.0	0.0	.	154	.	C|1.000;G|0.000	Atlas-SNP
SLAIN2	57606	hgsc.bcm.edu	hg19	4	48384604	48384604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLAIN2	NM_020846	exon5	c.A882G	p.A294A	ATATGCAGCCACC	.	45.0	4.0	29.0	0.0	.	31	.	.	Atlas-SNP
SRP72	6731	hgsc.bcm.edu	hg19	4	57340538	57340538	+	Missense_Mutation	SNP	A	A	C	rs200923265		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SRP72,NS,carcinoma,0,1	SRP72	NM_006947	exon5	c.A591C	p.K197N	CATGAAAATCCTA	.	106.0	7.0	97.0	0.0	.	59	.	A|0.998;C|0.002	Atlas-SNP
AFF1	4299	hgsc.bcm.edu	hg19	4	88026981	88026981	+	Missense_Mutation	SNP	T	T	C	rs141434206	bycluster;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AFF1	NM_001166693	exon10	c.T1360C	p.S454P	CCCTCCTCATCTG	.	112.0	5.0	176.0	0.0	.	102	.	T|1.000;A|0.000	Atlas-SNP
FAM13A	10144	hgsc.bcm.edu	hg19	4	89702436	89702436	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM13A	NM_014883	exon11	c.T1338C	p.T446T	TTCCTGAGTATTC	.	97.0	4.0	134.0	0.0	.	181	.	.	Atlas-SNP
RAP1GDS1	5910	hgsc.bcm.edu	hg19	4	99313179	99313179	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAP1GDS1	NM_001100426	exon6	c.T588C	p.N196N	CCAAAATGCAGCT	.	77.0	33.0	126.0	0.0	.	61	.	.	Atlas-SNP
ADH4	127	hgsc.bcm.edu	hg19	4	100060247	100060247	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADH4	NM_000670	exon4	c.T315C	p.C105C	ACTCAGACAAAAC	.	100.0	4.0	119.0	0.0	.	35	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104066439	104066439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPE	NM_001813	exon32	c.A4625G	p.E1542G	TGAACCTCACTAA	.	86.0	5.0	119.0	0.0	.	253	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107156504	107156504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	TBCK	NM_001163436	exon15	c.C1371A	p.N457K	GATTTGGTTTTTT	.	34.0	2.0	53.0	0.0	.	89	.	.	Atlas-SNP
CYP2U1	113612	hgsc.bcm.edu	hg19	4	108866756	108866756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP2U1	NM_183075	exon2	c.T1121C	p.V374A	CCGATGTACAAGG	.	68.0	4.0	84.0	0.0	.	20	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114276005	114276005	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANK2	NM_001148	exon38	c.A6231G	p.K2077K	TAAGAAAGAAGAT	.	92.0	5.0	108.0	0.0	.	576	.	.	Atlas-SNP
CCNA2	890	hgsc.bcm.edu	hg19	4	122742218	122742218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CCNA2,colon,carcinoma,0,1	CCNA2	NM_001237	exon3	c.T486G	p.I162M	TAATATAATTGAC	.	135.0	0.0	166.0	0.0	.	30	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123145811	123145811	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1109	NM_015312	exon21	c.A2772G	p.T924T	TCTTACAGCTAAG	.	168.0	7.0	209.0	0.0	.	424	.	.	Atlas-SNP
SPRY1	10252	hgsc.bcm.edu	hg19	4	124322782	124322782	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRY1	NM_001258039	exon2	c.G36A	p.S12S	CAGTTCGTTAGTT	.	188.0	60.0	143.0	0.0	.	28	.	.	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	hg19	4	125593315	125593315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ANKRD50,NS,carcinoma,0,1	ANKRD50	NM_020337	exon4	c.G1117A	p.V373I	TCCATACTGCGTG	.	95.0	4.0	119.0	1.0	.	136	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126329790	126329790	+	Missense_Mutation	SNP	G	G	C	rs370906656	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	FAT4_ENST00000394329,NS,carcinoma,0,2	FAT4	NM_024582	exon4	c.G5761C	p.G1921R	GAAGATGGTGGGG	.	97.0	0.0	82.0	0.0	.	1752	.	.	Atlas-SNP
RNF150	57484	hgsc.bcm.edu	hg19	4	141868832	141868832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF150	NM_020724	exon4	c.A866G	p.D289G	ACAACGTCATTGG	.	264.0	11.0	251.0	0.0	.	94	.	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144135539	144135539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP38	NM_032557	exon9	c.T2410C	p.S804P	TCATTGTCAGAAA	.	130.0	6.0	112.0	0.0	.	92	.	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144135649	144135649	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP38	NM_032557	exon9	c.T2520C	p.Y840Y	GCCCTATCTATTA	.	82.0	4.0	66.0	0.0	.	92	.	.	Atlas-SNP
ARFIP1	27236	hgsc.bcm.edu	hg19	4	153803996	153803996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFIP1	NM_001025595	exon7	c.A755G	p.D252G	TTGAAGATACATT	.	65.0	4.0	60.0	0.0	.	69	.	.	Atlas-SNP
DDX60	55601	hgsc.bcm.edu	hg19	4	169195111	169195111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60	NM_017631	exon17	c.G2428T	p.V810L	CGACCACCCCGTC	.	88.0	6.0	82.0	0.0	.	304	.	.	Atlas-SNP
SORBS2	8470	hgsc.bcm.edu	hg19	4	186598318	186598318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORBS2	NM_001145673	exon5	c.A325G	p.T109A	TGTGTGTCTCAGG	.	139.0	6.0	133.0	0.0	.	300	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187517698	187517698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAT1	NM_005245	exon25	c.T12996C	p.Y4332Y	ACTGTCATAGTCA	.	99.0	4.0	83.0	0.0	.	500	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7396594	7396594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADCY2	NM_020546	exon1	c.T185C	p.L62P	CCCTGCTCGCCGT	.	150.0	6.0	63.0	0.0	.	337	.	.	Atlas-SNP
FAM173B	134145	hgsc.bcm.edu	hg19	5	10239279	10239279	+	Missense_Mutation	SNP	G	G	T	rs367602123	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	FAM173B,NS,carcinoma,0,1	FAM173B	NM_199133	exon2	c.C206A	p.P69Q	ACAAACGGCAAAC	.	236.0	0.0	110.0	1.0	.	24	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11159822	11159822	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTNND2	NM_001332	exon12	c.C2025T	p.I675I	ATCCTGGATGATT	.	323.0	66.0	185.0	0.0	.	289	.	.	Atlas-SNP
NUP155	9631	hgsc.bcm.edu	hg19	5	37352917	37352917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP155	NM_153485	exon5	c.C478T	p.H160Y	GCACATGAGGTTG	.	102.0	6.0	67.0	0.0	.	116	.	.	Atlas-SNP
SNX18	112574	hgsc.bcm.edu	hg19	5	53813856	53813856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNX18	NM_052870	exon1	c.A74G	p.E25G	AGCACGAGGTGCT	.	48.0	5.0	33.0	0.0	.	102	.	.	Atlas-SNP
ERCC8	1161	hgsc.bcm.edu	hg19	5	60214181	60214181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERCC8	NM_000082	exon4	c.A310G	p.T104A	GTACAGTCTCCAC	.	115.0	5.0	77.0	0.0	.	31	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60839780	60839780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZSWIM6	NM_020928	exon14	c.T3284C	p.V1095A	TGGTGGTCAAGAG	.	143.0	7.0	83.0	0.0	.	51	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89968413	89968413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR98	NM_032119	exon22	c.A4803G	p.G1601G	CAGAGGAGCTCTG	.	372.0	87.0	177.0	0.0	.	605	.	.	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98194094	98194094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD1	NM_001270	exon34	c.A4577G	p.D1526G	TCCACATCTGTTA	.	170.0	7.0	111.0	0.0	.	137	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109190938	109190938	+	Missense_Mutation	SNP	C	C	T	rs200723635		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	MAN2A1,colon,carcinoma,0,1	MAN2A1	NM_002372	exon20	c.C3074T	p.S1025F	AGTTCTCCTCACC	.	81.0	8.0	48.0	2.0	.	136	.	.	Atlas-SNP
KCNN2	3781	hgsc.bcm.edu	hg19	5	113698631	113698631	+	Silent	SNP	T	T	C	rs76852708		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,4	KCNN2	NM_021614	exon1	c.T159C	p.A53A	AGCCGCTGCCGCC	.	17.0	4.0	2.0	0.0	.	144	.	.	Atlas-SNP
PHAX	51808	hgsc.bcm.edu	hg19	5	125960441	125960441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHAX	NM_032177	exon5	c.T1090C	p.S364P	TTGGCCTCTCTTG	.	160.0	7.0	103.0	0.0	.	20	.	.	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140627002	140627002	+	Missense_Mutation	SNP	C	C	G	rs17844634		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	PCDHB15,NS,carcinoma,0,2	PCDHB15	NM_018935	exon1	c.C1856G	p.A619G	TGTGGGCGCACAA	.	35.0	11.0	7.0	1.0	.	138	.	.	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	hg19	5	149006643	149006643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF37	NM_001001669	exon11	c.T1469C	p.L490P	AGCCGCTCCTTCC	.	208.0	9.0	94.0	0.0	.	45	.	.	Atlas-SNP
THG1L	54974	hgsc.bcm.edu	hg19	5	157161681	157161681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THG1L	NM_017872	exon3	c.T466C	p.F156L	CCAGGCTTTGACG	.	191.0	8.0	99.0	0.0	.	31	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168212944	168212944	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLIT3	NM_001271946	exon12	c.A1119G	p.G373G	AAACAGTCCCTTG	.	132.0	6.0	66.0	0.0	.	224	.	.	Atlas-SNP
EXOC2	55770	hgsc.bcm.edu	hg19	6	532529	532529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	EXOC2,NS,carcinoma,0,1	EXOC2	NM_018303	exon23	c.T2320C	p.S774P	CTAAGGAGCCAAC	.	217.0	9.0	144.0	0.0	.	81	.	.	Atlas-SNP
SOX4	6659	hgsc.bcm.edu	hg19	6	21595211	21595211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SOX4,mouth,carcinoma,0,1	SOX4	NM_003107	exon1	c.C446T	p.S149F	CCTCCTCCAAGCC	.	62.0	3.0	29.0	0.0	.	11	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32191665	32191665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOTCH4	NM_004557	exon1	c.T41C	p.L14P	AGCAGCAGCAGCA	.	93.0	4.0	59.0	0.0	.	201	.	.	Atlas-SNP
HLA-DRA	3122	hgsc.bcm.edu	hg19	6	32411036	32411036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	HLA-DRA,NS,carcinoma,0,1	HLA-DRA	NM_019111	exon3	c.G403C	p.D135H	TTCATAGACAAGT	.	264.0	0.0	157.0	0.0	.	34	.	.	Atlas-SNP
BRD2	6046	hgsc.bcm.edu	hg19	6	32945598	32945598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRD2	NM_005104	exon9	c.T1394C	p.V465A	TACCAGTCTCTAC	.	288.0	22.0	205.0	0.0	.	70	.	.	Atlas-SNP
SCUBE3	222663	hgsc.bcm.edu	hg19	6	35216340	35216340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCUBE3	NM_152753	exon22	c.A2840G	p.K947R	ACAAGAAGCTCAT	.	86.0	4.0	56.0	0.0	.	99	.	.	Atlas-SNP
TREML4	285852	hgsc.bcm.edu	hg19	6	41196606	41196606	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TREML4,NS,carcinoma,0,1	TREML4	NM_198153	exon2	c.G218C	p.W73S	AGCCCTGGACAGC	.	138.0	0.0	95.0	0.0	.	25	.	.	Atlas-SNP
CUL7	9820	hgsc.bcm.edu	hg19	6	43017756	43017756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CUL7	NM_001168370	exon6	c.A1766G	p.D589G	GGTCCATCCAGCT	.	97.0	5.0	70.0	0.0	.	133	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66094287	66094287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYS	NM_001142801	exon8	c.A1291G	p.R431G	TGAATCTTCCAAT	.	77.0	4.0	42.0	0.0	.	527	.	.	Atlas-SNP
LMBRD1	55788	hgsc.bcm.edu	hg19	6	70490443	70490443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LMBRD1	NM_018368	exon3	c.T250C	p.W84R	TAGCCCAGTCCTA	.	52.0	4.0	40.0	0.0	.	61	.	.	Atlas-SNP
DPPA5	340168	hgsc.bcm.edu	hg19	6	74063604	74063604	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPPA5	NM_001025290	exon2	c.T264C	p.A88A	CCACTCAGCCATG	.	134.0	6.0	97.0	0.0	.	23	.	.	Atlas-SNP
FAM46A	55603	hgsc.bcm.edu	hg19	6	82459741	82459741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM46A	NM_017633	exon3	c.A1000G	p.R334G	GTTTTCTCTGCTG	.	139.0	6.0	116.0	0.0	.	37	.	.	Atlas-SNP
RARS2	57038	hgsc.bcm.edu	hg19	6	88229963	88229963	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RARS2	NM_020320	exon13	c.A1047G	p.G349G	TTTTTGTCCTTTA	.	67.0	4.0	30.0	0.0	.	61	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101312035	101312035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASCC3	NM_006828	exon3	c.A146G	p.K49R	ATTATCTTCTTCC	.	112.0	5.0	75.0	0.0	.	205	.	.	Atlas-SNP
FIG4	9896	hgsc.bcm.edu	hg19	6	110112750	110112750	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FIG4	NM_014845	exon20	c.A2352G	p.A784A	TGATGCAGGAGAC	.	55.0	4.0	54.0	0.0	.	77	.	.	Atlas-SNP
HS3ST5	222537	hgsc.bcm.edu	hg19	6	114383906	114383906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HS3ST5	NM_153612	exon1	c.A104G	p.D35G	CACCTATCCAAGC	.	117.0	6.0	77.0	0.0	.	80	.	.	Atlas-SNP
RWDD1	51389	hgsc.bcm.edu	hg19	6	116901503	116901503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RWDD1	NM_015952	exon2	c.A119G	p.E40G	CGTCTGAGGCTGG	.	68.0	4.0	41.0	0.0	.	21	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123594509	123594509	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRDN	NM_006073	exon29	c.1598-1G>A	.	ATATAGCTAAAAT	.	76.0	6.0	33.0	0.0	.	88	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123594510	123594510	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRDN	NM_006073	exon29	c.1598-2A>T	.	TATAGCTAAAATA	.	74.0	5.0	32.0	0.0	.	88	.	.	Atlas-SNP
TPD52L1	7164	hgsc.bcm.edu	hg19	6	125541327	125541327	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPD52L1	NM_001003396	exon2	c.A123G	p.A41A	AAAAGCAGAGTTA	.	121.0	5.0	95.0	0.0	.	14	.	.	Atlas-SNP
HINT3	135114	hgsc.bcm.edu	hg19	6	126278232	126278232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HINT3	NM_138571	exon1	c.A109C	p.K37Q	GCTGGCAAGTCAC	.	187.0	8.0	117.0	0.0	.	14	.	.	Atlas-SNP
TRMT11	60487	hgsc.bcm.edu	hg19	6	126319442	126319442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRMT11	NM_001031712	exon5	c.A368G	p.E123G	AAGAAGAGAAAAT	.	64.0	4.0	54.0	0.0	.	43	.	.	Atlas-SNP
C6orf58	352999	hgsc.bcm.edu	hg19	6	127902409	127902409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C6orf58	NM_001010905	exon4	c.T656C	p.I219T	ATAATATCAAAAG	.	59.0	4.0	43.0	0.0	.	35	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128388715	128388715	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPRK	NM_001135648	exon12	c.T2106C	p.A702A	GCGCGGAGCCAAA	.	82.0	4.0	45.0	0.0	.	330	.	.	Atlas-SNP
PBOV1	59351	hgsc.bcm.edu	hg19	6	138539188	138539188	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBOV1	NM_021635	exon1	c.G345A	p.Q115Q	TAGGGTCTGAGTT	.	274.0	15.0	205.0	0.0	.	12	.	.	Atlas-SNP
PHACTR2	9749	hgsc.bcm.edu	hg19	6	144086851	144086851	+	Missense_Mutation	SNP	A	A	G	rs372509172		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHACTR2	NM_001100164	exon6	c.A1148G	p.Q383R	CAAGTCAGCTTCT	.	73.0	4.0	60.0	0.0	.	99	.	.	Atlas-SNP
RAET1L	154064	hgsc.bcm.edu	hg19	6	150343212	150343212	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	RAET1L,NS,carcinoma,0,2	RAET1L	NM_130900	exon2	c.A253C	p.M85L	AGGCCATTGTGAC	.	354.0	0.0	208.0	1.0	.	21	.	.	Atlas-SNP
AKAP12	9590	hgsc.bcm.edu	hg19	6	151672185	151672185	+	Missense_Mutation	SNP	A	A	G	rs61748676	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP12	NM_005100	exon4	c.A2659G	p.S887G	AGCGAGAGTCAGG	.	123.0	6.0	84.0	0.0	.	170	.	A|0.978;T|0.022	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152589207	152589207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNE1	NM_182961	exon100	c.A18799G	p.T6267A	CAGAGGTCTCTGC	.	112.0	5.0	92.0	0.0	.	3227	.	.	Atlas-SNP
CLDN20	49861	hgsc.bcm.edu	hg19	6	155596902	155596902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CLDN20,NS,carcinoma,0,1	CLDN20	NM_001001346	exon2	c.G49C	p.G17R	TTATCTGGGGTCT	.	231.0	0.0	177.0	0.0	.	10	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157099949	157099949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARID1B	NM_017519	exon1	c.A886G	p.N296D	CAGTGCAACCATT	.	37.0	4.0	23.0	0.0	.	320	.	.	Atlas-SNP
TAGAP	117289	hgsc.bcm.edu	hg19	6	159464683	159464683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAGAP	NM_138810	exon4	c.A86G	p.D29G	TTGATATCACCCT	.	159.0	7.0	103.0	0.0	.	75	.	.	Atlas-SNP
SLC22A2	6582	hgsc.bcm.edu	hg19	6	160671613	160671613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC22A2	NM_003058	exon3	c.A640G	p.S214G	CTTTGCTGACCAG	.	87.0	4.0	125.0	0.0	.	78	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	161022116	161022116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LPA	NM_005577	exon20	c.A2960G	p.N987S	CAGTAGTTCTTGA	.	73.0	4.0	136.0	0.0	.	237	.	.	Atlas-SNP
DLL1	28514	hgsc.bcm.edu	hg19	6	170592565	170592565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DLL1,caecum,carcinoma,0,1	DLL1	NM_005618	exon9	c.A1802G	p.D601G	GAGATGTCCTTCT	.	108.0	5.0	44.0	0.0	.	72	.	.	Atlas-SNP
PDCD2	5134	hgsc.bcm.edu	hg19	6	170886715	170886715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD2	NM_002598	exon6	c.A967G	p.S323G	TGCAGCTCTCAGC	.	167.0	7.0	103.0	0.0	.	13	.	.	Atlas-SNP
FOXK1	221937	hgsc.bcm.edu	hg19	7	4722303	4722303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FOXK1	NM_001037165	exon1	c.A364G	p.S122G	CAGCCCAGCGTCA	.	78.0	5.0	66.0	0.0	.	64	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20698161	20698161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB5	NM_001163941	exon14	c.T1569C	p.A523A	AGGAGCTCAAATG	.	83.0	6.0	89.0	0.0	.	357	.	.	Atlas-SNP
RFC2	5982	hgsc.bcm.edu	hg19	7	73651756	73651756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RFC2	NM_181471	exon9	c.A776G	p.H259R	AGTGGGTGGGGCT	.	123.0	5.0	63.0	0.0	.	27	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75221727	75221727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HIP1	NM_005338	exon3	c.A290G	p.H97R	AACACATGGCAGA	.	92.0	4.0	77.0	0.0	.	91	.	.	Atlas-SNP
GNAT3	346562	hgsc.bcm.edu	hg19	7	80103636	80103636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNAT3	NM_001102386	exon5	c.T521C	p.V174A	TGGAGAACATCTT	.	95.0	4.0	90.0	0.0	.	65	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84644405	84644405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEMA3D	NM_152754	exon14	c.C1673T	p.A558V	GAGCATGCATTTC	.	157.0	34.0	148.0	0.0	.	177	.	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91726654	91726654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP9	NM_005751	exon41	c.T10381A	p.Y3461N	ATTCTGTATCAGA	.	56.0	4.0	40.0	0.0	.	788	.	.	Atlas-SNP
CYP3A4	1576	hgsc.bcm.edu	hg19	7	99364063	99364063	+	Nonsense_Mutation	SNP	G	G	A	rs138105638		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP3A4	NM_017460	exon9	c.C802T	p.R268X	CCACTCGGTGCTA	.	187.0	26.0	159.0	0.0	.	56	.	G|1.000;A|0.000	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	hg19	7	105283324	105283324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L1	NM_020725	exon5	c.G823C	p.G275R	TGGTGCCATTTTG	.	475.0	126.0	309.0	0.0	.	56	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128455707	128455707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC136	NM_022742	exon16	c.A3085C	p.K1029Q	CAGAGGAAATTAG	.	146.0	73.0	102.0	0.0	.	170	.	.	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	hg19	7	133580480	133580480	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EXOC4	NM_021807	exon12	c.A1863G	p.A621A	CACTGCAGCTTAC	.	131.0	6.0	87.0	0.0	.	118	.	.	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	hg19	7	147844667	147844667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTNAP2	NM_014141	exon17	c.A2639G	p.D880G	ACGATGACCAGTG	.	117.0	5.0	87.0	0.0	.	392	.	.	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	hg19	7	149152609	149152609	+	Missense_Mutation	SNP	A	A	G	rs3823695	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF777	NM_015694	exon2	c.T505C	p.S169P	CAGAAGAGATCTG	.	103.0	5.0	66.0	0.0	.	63	.	.	Atlas-SNP
ABCB8	11194	hgsc.bcm.edu	hg19	7	150739104	150739104	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCB8	NM_007188	exon14	c.A1674G	p.E558E	GCTGGAAGCTTCC	.	95.0	4.0	51.0	0.0	.	65	.	.	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	hg19	7	158719144	158719144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR60	NM_018051	exon19	c.T2423C	p.L808P	GGGTTCTCAATGT	.	195.0	8.0	134.0	0.0	.	94	.	.	Atlas-SNP
ZDHHC2	51201	hgsc.bcm.edu	hg19	8	17067945	17067945	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZDHHC2	NM_016353	exon10	c.T906C	p.P302P	GGATCCTGAACAA	.	63.0	4.0	74.0	0.0	.	25	.	.	Atlas-SNP
INTS10	55174	hgsc.bcm.edu	hg19	8	19675087	19675087	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	INTS10	NM_018142	exon1	c.A39G	p.R13R	GCAGCGAGCCCGG	.	61.0	4.0	89.0	0.0	.	46	.	.	Atlas-SNP
PDLIM2	64236	hgsc.bcm.edu	hg19	8	22452076	22452076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDLIM2	NM_176871	exon10	c.T1015C	p.S339P	AGATTGTCACTGG	.	57.0	4.0	85.0	0.0	.	42	.	.	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	hg19	8	25182970	25182970	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK5	NM_024940	exon18	c.A1810T	p.K604X	GCATCCAAAAACC	.	137.0	7.0	167.0	0.0	.	167	.	.	Atlas-SNP
PBK	55872	hgsc.bcm.edu	hg19	8	27668599	27668599	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBK	NM_018492	exon7	c.A648G	p.E216E	CACAGCTTCTTTG	.	94.0	4.0	139.0	0.0	.	29	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28928094	28928094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF13B	NM_015254	exon40	c.C5408T	p.S1803L	GTCAGCGAGGCCA	.	47.0	4.0	78.0	0.0	.	192	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28999714	28999714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF13B	NM_015254	exon19	c.A2294G	p.D765G	TAAAGGTCTCTCA	.	78.0	5.0	97.0	0.0	.	192	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30703400	30703400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEX15	NM_031271	exon1	c.A3134G	p.D1045G	TGAAGGTCACAAC	.	69.0	4.0	99.0	0.0	.	350	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38178646	38178646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WHSC1L1	NM_017778	exon8	c.T1753C	p.S585P	ATTCAGAACGAGT	.	82.0	4.0	83.0	0.0	.	137	.	.	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	hg19	8	68113709	68113709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARFGEF1	NM_006421	exon37	c.C5260G	p.L1754V	TCAAAAGCCTCTG	.	349.0	17.0	106.0	0.0	.	196	.	.	Atlas-SNP
OC90	729330	hgsc.bcm.edu	hg19	8	133036828	133036828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	OC90_ENST00000262283,caecum,carcinoma,0,2	OC90	NM_001080399	exon14	c.A1334G	p.D445G	TCGCTGTCCTCCT	.	187.0	10.0	52.0	0.0	.	163	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141749131	141749131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTK2	NM_005607	exon21	c.A1877G	p.D626G	CATACGTCACTAG	.	116.0	5.0	26.0	0.0	.	311	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144940597	144940597	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPPK1	NM_031308	exon1	c.C6825T	p.P2275P	GCGCACGGGGTCG	.	39.0	4.0	1.0	0.0	.	199	.	.	Atlas-SNP
KIFC2	90990	hgsc.bcm.edu	hg19	8	145693366	145693366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIFC2	NM_145754	exon7	c.C806T	p.P269L	GGGCTCCGCAGGT	.	218.0	25.0	42.0	0.0	.	53	.	.	Atlas-SNP
RFX3	5991	hgsc.bcm.edu	hg19	9	3275558	3275558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RFX3	NM_134428	exon10	c.A1028G	p.D343G	GTACCATCTGGCA	.	68.0	4.0	88.0	0.0	.	156	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5921058	5921058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA2026	NM_001017969	exon8	c.A4938G	p.S1646S	TCTTGCTGAAGAA	.	72.0	5.0	51.0	0.0	.	231	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13125334	13125334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MPDZ	NM_003829	exon35	c.A4688G	p.E1563G	GGATTCTCAGCAT	.	114.0	6.0	135.0	0.0	.	324	.	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	hg19	9	14863881	14863881	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FREM1	NM_144966	exon4	c.T255C	p.L85L	GTTGGGAAGGAAA	.	100.0	4.0	112.0	0.0	.	261	.	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19346888	19346888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DENND4C,colon,carcinoma,0,1	DENND4C	NM_017925	exon22	c.C3974T	p.S1325F	CAACTTCTTTGTC	.	72.0	4.0	36.0	0.0	.	120	.	.	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32425907	32425907	+	Silent	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ACO1_ENST00000379923,NS,carcinoma,0,2	ACO1	NM_002197	exon11	c.T1260G	p.T420T	TAACACTGAATTC	.	97.0	4.0	121.0	0.0	.	149	.	.	Atlas-SNP
CHMP5	51510	hgsc.bcm.edu	hg19	9	33271180	33271180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHMP5	NM_016410	exon5	c.A346G	p.M116V	AAGGAAATGAAGA	.	82.0	6.0	64.0	0.0	.	15	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33295418	33295418	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFX1	NM_147134	exon2	c.G1026A	p.T342T	GGAAACGCACACA	.	33.0	14.0	27.0	0.0	.	85	.	.	Atlas-SNP
C9orf24	84688	hgsc.bcm.edu	hg19	9	34385753	34385753	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C9orf24	NM_032596	exon2	c.T162C	p.H54H	ATCCACATGTCGC	.	95.0	4.0	95.0	0.0	.	15	.	.	Atlas-SNP
SIGMAR1	10280	hgsc.bcm.edu	hg19	9	34635688	34635688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIGMAR1	NM_005866	exon4	c.T613C	p.S205P	CATAGGAGCGAAG	.	161.0	7.0	134.0	0.0	.	6	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35717439	35717439	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLN1	NM_006289	exon20	c.2164-2A>G	.	ACCACCTGTAGGT	.	73.0	4.0	66.0	0.0	.	185	.	.	Atlas-SNP
HRCT1	646962	hgsc.bcm.edu	hg19	9	35906303	35906303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HRCT1	NM_001039792	exon1	c.A19G	p.S7G	CTGGGGAGCACAG	.	100.0	7.0	68.0	0.0	.	14	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37707505	37707505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FRMPD1	NM_014907	exon3	c.T194C	p.L65P	ACACCCTCCTCCA	.	86.0	4.0	72.0	0.0	.	237	.	.	Atlas-SNP
PSAT1	29968	hgsc.bcm.edu	hg19	9	80923403	80923403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSAT1	NM_021154	exon6	c.A644G	p.D215G	GTGATGACCTGCT	.	145.0	6.0	192.0	0.0	.	33	.	.	Atlas-SNP
UBQLN1	29979	hgsc.bcm.edu	hg19	9	86284243	86284243	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBQLN1	NM_013438	exon8	c.1106-1G>A	.	TACTAGCTGAAAG	.	80.0	5.0	78.0	0.0	.	49	.	.	Atlas-SNP
SLC28A3	64078	hgsc.bcm.edu	hg19	9	86920237	86920237	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SLC28A3,NS,carcinoma,0,1	SLC28A3	NM_001199633	exon4	c.C266G	p.T89R	CATACTGTGTCAT	.	145.0	0.0	114.0	0.0	.	72	.	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101765842	101765842	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	COL15A1,NS,carcinoma,0,1	COL15A1	NM_001855	exon8	c.G1173T	p.T391T	GTCCACGGAGAAC	.	196.0	0.0	180.0	1.0	.	211	.	.	Atlas-SNP
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu	hg19	9	103279042	103279042	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001198812	exon5	c.A771G	p.A257A	AGATGCAGAAAAT	.	113.0	5.0	86.0	0.0	.	.	.	.	Atlas-SNP
RNF20	56254	hgsc.bcm.edu	hg19	9	104323165	104323165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF20	NM_019592	exon17	c.A2465G	p.E822G	AGAAAGAGCTGGG	.	134.0	6.0	101.0	0.0	.	110	.	.	Atlas-SNP
RAD23B	5887	hgsc.bcm.edu	hg19	9	110091920	110091920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAD23B	NM_002874	exon10	c.A1213G	p.N405D	CAGCAGAACTTTG	.	71.0	4.0	85.0	0.0	.	31	.	.	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	hg19	9	125835865	125835865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RABGAP1	NM_012197	exon16	c.A2018G	p.K673R	TGGTCAAGATCAT	.	96.0	4.0	126.0	0.0	.	164	.	.	Atlas-SNP
WDR38	401551	hgsc.bcm.edu	hg19	9	127619900	127619900	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR38	NM_001276374	exon9	c.T939C	p.P313P	GGACCCTCAAACC	.	95.0	4.0	50.0	0.0	.	21	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134015961	134015961	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP214	NM_005085	exon11	c.T1158C	p.A386A	TCCTGCTCCAGTT	.	112.0	5.0	88.0	0.0	.	166	.	.	Atlas-SNP
C9orf171	389799	hgsc.bcm.edu	hg19	9	135374145	135374145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C9orf171	NM_207417	exon3	c.C367T	p.L123F	TATGGACTCTACA	.	52.0	5.0	51.0	0.0	.	53	.	.	Atlas-SNP
SDCCAG3	10807	hgsc.bcm.edu	hg19	9	139301956	139301956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDCCAG3	NM_001039707	exon5	c.G460A	p.G154R	CATACCCGCCGGT	.	72.0	4.0	50.0	0.0	.	41	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139906582	139906582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA2	NM_212533	exon34	c.A5422G	p.T1808A	CGCTGGTCTTATT	.	83.0	6.0	56.0	0.0	.	113	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140772543	140772543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1B	NM_001243812	exon1	c.C158T	p.A53V	AGCGCGCGCGGAC	.	170.0	75.0	99.0	0.0	.	266	.	.	Atlas-SNP
FAM208B	54906	hgsc.bcm.edu	hg19	10	5803302	5803302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_017782	exon19	c.A7042G	p.S2348G	TTTCAGAGTGCAA	.	113.0	5.0	127.0	0.0	.	.	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	hg19	10	8007022	8007022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAF3	NM_031923	exon3	c.T1549C	p.S517P	CTGCCTTCCTCCG	.	85.0	4.0	82.0	0.0	.	93	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	hg19	10	8007368	8007368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TAF3,NS,carcinoma,0,1	TAF3	NM_031923	exon3	c.A1895G	p.K632R	AAGATAAGAGAGA	.	37.0	2.0	28.0	0.0	.	93	.	.	Atlas-SNP
OPTN	10133	hgsc.bcm.edu	hg19	10	13152401	13152401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	OPTN,NS,carcinoma,0,1	OPTN	NM_001008212	exon4	c.G294A	p.M98I	TCTAATGGCCTTG	.	155.0	0.0	149.0	0.0	.	57	.	.	Atlas-SNP
FRMD4A	55691	hgsc.bcm.edu	hg19	10	13838525	13838525	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FRMD4A	NM_018027	exon5	c.A270G	p.S90S	GGGTCCTGACTTT	.	84.0	4.0	64.0	0.0	.	108	.	.	Atlas-SNP
NSUN6	221078	hgsc.bcm.edu	hg19	10	18837156	18837156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NSUN6	NM_182543	exon10	c.T1082C	p.L361P	TTCAGCAGCTGAA	.	92.0	4.0	105.0	0.0	.	46	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26462846	26462846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO3A	NM_017433	exon30	c.T3653C	p.V1218A	AGTCTGTCAAAGA	.	106.0	5.0	90.0	0.0	.	371	.	.	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29839664	29839664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SVIL	NM_003174	exon8	c.T689C	p.F230S	AAAGAGAAGGTCG	.	81.0	5.0	70.0	0.0	.	226	.	.	Atlas-SNP
EGR2	1959	hgsc.bcm.edu	hg19	10	64573486	64573486	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	EGR2,colon,carcinoma,0,4	EGR2	NM_000399	exon2	c.C912A	p.A304A	GGCGGCGGCTGCT	.	60.0	3.0	33.0	0.0	.	77	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64967219	64967219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JMJD1C	NM_032776	exon10	c.G4210A	p.D1404N	TAGTATCGGCAGC	.	100.0	4.0	113.0	0.0	.	347	.	.	Atlas-SNP
PPA1	5464	hgsc.bcm.edu	hg19	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPA1	NM_021129	exon7	c.T540C	p.P180P	GTAGCCAGGTTTC	.	238.0	18.0	211.0	0.0	.	24	.	.	Atlas-SNP
PLA2G12B	84647	hgsc.bcm.edu	hg19	10	74702445	74702445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2G12B	NM_032562	exon2	c.G265T	p.G89C	AGGAGCCGCAGCC	.	61.0	27.0	58.0	0.0	.	19	.	.	Atlas-SNP
ZMIZ1	57178	hgsc.bcm.edu	hg19	10	81058316	81058316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZMIZ1,right_upper_lobe,carcinoma,0,1	ZMIZ1	NM_020338	exon15	c.A1645G	p.S549G	AATATGAGCGCTC	.	77.0	4.0	73.0	0.0	.	101	.	.	Atlas-SNP
PCGF5	84333	hgsc.bcm.edu	hg19	10	93000241	93000241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCGF5	NM_001256549	exon3	c.T113C	p.F38S	TCTTAGTCTGTAA	.	58.0	4.0	76.0	0.0	.	29	.	.	Atlas-SNP
ARHGAP19	84986	hgsc.bcm.edu	hg19	10	99025639	99025639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP19	NM_001204300	exon2	c.T300C	p.S100S	CATGAGAGACCGG	.	84.0	4.0	62.0	0.0	.	72	.	.	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	hg19	10	102275905	102275905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC31B	NM_015490	exon3	c.A151G	p.R51G	GGTCCCTGAAATC	.	91.0	4.0	116.0	0.0	.	84	.	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102777929	102777929	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDZD7	NM_001195263	exon9	c.C1449T	p.D483D	GCGCCCGTCCCGC	.	138.0	39.0	104.0	0.0	.	101	.	.	Atlas-SNP
FBXW4	6468	hgsc.bcm.edu	hg19	10	103433426	103433426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FBXW4	NM_022039	exon3	c.A361G	p.M121V	AGGGCATCTGACT	.	90.0	4.0	85.0	0.0	.	39	.	.	Atlas-SNP
TMEM180	79847	hgsc.bcm.edu	hg19	10	104230585	104230585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM180	NM_024789	exon5	c.A415G	p.T139A	TTCCTGACGCTCG	.	123.0	5.0	103.0	0.0	.	33	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105174798	105174798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD11	NM_014976	exon12	c.G1408A	p.V470M	ATGCTGGTGAAGG	.	151.0	48.0	110.0	0.0	.	160	.	.	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105971830	105971830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR96	NM_025145	exon5	c.T670C	p.Y224H	GACCATAGATGAG	.	64.0	4.0	72.0	0.0	.	183	.	.	Atlas-SNP
CCDC147	159686	hgsc.bcm.edu	hg19	10	106121791	106121791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC147	NM_001008723	exon3	c.A302G	p.K101R	TTGAAAAGGCCTG	.	90.0	4.0	56.0	0.0	.	137	.	.	Atlas-SNP
XPNPEP1	7511	hgsc.bcm.edu	hg19	10	111635319	111635319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPNPEP1	NM_020383	exon15	c.A1358G	p.E453G	TACACCTCATCCA	.	90.0	5.0	112.0	0.0	.	110	.	.	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	hg19	10	113935417	113935417	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPAM	NM_001244949	exon6	c.A354G	p.R118R	CACATCTCGCTCT	.	60.0	4.0	73.0	0.0	.	68	.	.	Atlas-SNP
FAM160B1	57700	hgsc.bcm.edu	hg19	10	116608429	116608429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM160B1	NM_020940	exon13	c.A1736G	p.D579G	CGGATGACGCAAA	.	99.0	4.0	94.0	0.0	.	107	.	.	Atlas-SNP
PNLIPRP3	119548	hgsc.bcm.edu	hg19	10	118231366	118231366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNLIPRP3	NM_001011709	exon10	c.A1147G	p.K383E	GTTAGGAAAACTG	.	118.0	6.0	132.0	0.0	.	101	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	124008566	124008566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TACC2	NM_206862	exon21	c.A8555G	p.N2852S	GTCAGAATGAAGA	.	77.0	4.0	87.0	0.0	.	271	.	.	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124402895	124402895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DMBT1_ENST00000368915,colon,carcinoma,0,3	DMBT1	NM_007329	exon53	c.G7223A	p.R2408Q	CACGCCGAGAAGA	.	165.0	50.0	117.0	0.0	.	677	.	.	Atlas-SNP
PSTK	118672	hgsc.bcm.edu	hg19	10	124742793	124742793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	PSTK,NS,lymphoid_neoplasm,0,1	PSTK	NM_153336	exon3	c.T514A	p.L172M	GATTCGTTGGGCT	.	104.0	0.0	94.0	0.0	.	34	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1094691	1094691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC2	NM_002457	exon32	c.G5767T	p.G1923W	ACGACCGGGTCAT	.	164.0	7.0	101.0	0.0	.	614	.	.	Atlas-SNP
OR51A7	119687	hgsc.bcm.edu	hg19	11	4929062	4929062	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	OR51A7,NS,carcinoma,0,1	OR51A7	NM_001004749	exon1	c.T463G	p.L155V	ATTCTCTTAGTGA	.	149.0	0.0	94.0	0.0	.	86	.	.	Atlas-SNP
CNGA4	1262	hgsc.bcm.edu	hg19	11	6265177	6265177	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNGA4	NM_001037329	exon6	c.1268-2A>G	.	AGCCACAGGGAAC	.	46.0	4.0	32.0	0.0	.	96	.	.	Atlas-SNP
TRIM3	10612	hgsc.bcm.edu	hg19	11	6472208	6472208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM3	NM_001248006	exon9	c.A1784G	p.K595R	CAAGACTTGTTGT	.	93.0	4.0	55.0	0.0	.	67	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6653852	6653852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCHS1	NM_003737	exon6	c.A2891G	p.H964R	AGCTCATGGGCTG	.	86.0	4.0	38.0	0.0	.	277	.	.	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	hg19	11	17113160	17113160	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIK3C2A	NM_002645	exon30	c.T4686C	p.A1562A	TTTCACAGCTCCT	.	170.0	7.0	134.0	0.0	.	148	.	.	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18305405	18305405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HPS5	NM_181507	exon21	c.A2995G	p.R999G	CTCTTCTTCTCTC	.	89.0	4.0	47.0	0.0	.	70	.	.	Atlas-SNP
PTPN5	84867	hgsc.bcm.edu	hg19	11	18763990	18763990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	PTPN5_ENST00000358540,NS,carcinoma,0,2	PTPN5	NM_032781	exon7	c.C544T	p.R182C	ACTGGCGCCTGTC	.	120.0	59.0	95.0	0.0	.	163	.	.	Atlas-SNP
TCP11L1	55346	hgsc.bcm.edu	hg19	11	33079469	33079469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11L1	NM_001145541	exon5	c.T422C	p.L141P	AGACTCTCTTATC	.	96.0	4.0	77.0	0.0	.	40	.	.	Atlas-SNP
TCP11L1	55346	hgsc.bcm.edu	hg19	11	33083146	33083146	+	Silent	SNP	C	C	T	rs145755006		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TCP11L1_ENST00000324357,NS,carcinoma,0,2	TCP11L1	NM_001145541	exon7	c.C846T	p.H282H	TAAACACGCCCTG	.	123.0	29.0	92.0	0.0	.	40	.	C|1.000;T|0.000	Atlas-SNP
LDLRAD3	143458	hgsc.bcm.edu	hg19	11	36119988	36119988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LDLRAD3	NM_174902	exon4	c.A431G	p.E144G	GTGATGAGGAAAG	.	123.0	5.0	56.0	0.0	.	52	.	.	Atlas-SNP
OR8I2	120586	hgsc.bcm.edu	hg19	11	55861691	55861691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR8I2	NM_001003750	exon1	c.T908C	p.V303A	TGAGAGTCATACA	.	48.0	4.0	24.0	0.0	.	119	.	.	Atlas-SNP
OR8J1	219477	hgsc.bcm.edu	hg19	11	56128630	56128630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR8J1	NM_001005205	exon1	c.A908G	p.Q303R	CTCTACAGAGATT	.	125.0	5.0	76.0	0.0	.	87	.	.	Atlas-SNP
OR5M11	219487	hgsc.bcm.edu	hg19	11	56310224	56310224	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR5M11	NM_001005245	exon1	c.C510A	p.S170S	GACACTGGATCTA	.	131.0	7.0	84.0	0.0	.	60	.	.	Atlas-SNP
SERPING1	710	hgsc.bcm.edu	hg19	11	57367406	57367406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SERPING1	NM_001032295	exon2	c.A106G	p.S36G	CCAGAGAGTTTGC	.	156.0	7.0	96.0	0.0	.	57	.	.	Atlas-SNP
FADS3	3995	hgsc.bcm.edu	hg19	11	61658711	61658711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FADS3	NM_021727	exon1	c.T143C	p.I48T	CGGCTGATGTCGT	.	96.0	4.0	43.0	0.0	.	29	.	.	Atlas-SNP
FERMT3	83706	hgsc.bcm.edu	hg19	11	63988014	63988014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FERMT3	NM_178443	exon12	c.T1430C	p.L477P	CCTTCCTCAGCCT	.	94.0	4.0	46.0	0.0	.	51	.	.	Atlas-SNP
SCYL1	57410	hgsc.bcm.edu	hg19	11	65294460	65294460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCYL1	NM_020680	exon6	c.T721C	p.C241R	CATTACTGTGAGC	.	143.0	6.0	120.0	0.0	.	76	.	.	Atlas-SNP
MYEOV	26579	hgsc.bcm.edu	hg19	11	69063723	69063723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	MYEOV	NM_138768	exon3	c.T806C	p.L269P	AGGCCCTGGGGGG	.	145.0	8.0	86.0	2.0	.	42	.	.	Atlas-SNP
RNF121	55298	hgsc.bcm.edu	hg19	11	71671841	71671841	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RNF121	NM_018320	exon3	c.T147C	p.A49A	TGAAGCTATGCAT	.	119.0	5.0	85.0	0.0	.	19	.	.	Atlas-SNP
C11orf30	56946	hgsc.bcm.edu	hg19	11	76255832	76255832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C11orf30	NM_020193	exon19	c.T3239C	p.L1080P	TGTCGCTCCCAGC	.	63.0	4.0	55.0	0.0	.	123	.	.	Atlas-SNP
NARS2	79731	hgsc.bcm.edu	hg19	11	78154722	78154722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NARS2	NM_024678	exon12	c.A1247G	p.E416G	CGCTCCTCTAAGA	.	82.0	4.0	75.0	0.0	.	62	.	.	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877693	82877693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCF11	NM_015885	exon5	c.T1754C	p.V585A	AGAATGTAGAAAA	.	122.0	58.0	100.0	0.0	.	220	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93412715	93412715	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1731	NM_033395	exon7	c.T762C	p.A254A	TTTGGCTCAAGTA	.	134.0	6.0	68.0	0.0	.	173	.	.	Atlas-SNP
PANX1	24145	hgsc.bcm.edu	hg19	11	93912932	93912932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PANX1	NM_015368	exon4	c.T710C	p.L237P	TCAGCCTCTCCTC	.	117.0	7.0	90.0	0.0	.	38	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	102991458	102991458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC2H1	NM_001377	exon8	c.T1175C	p.I392T	AGATTATTGCACC	.	72.0	4.0	38.0	0.0	.	246	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103153740	103153740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC2H1	NM_001080463	exon74	c.T10837C	p.S3613P	AAGGACTCTCAAC	.	175.0	7.0	81.0	0.0	.	246	.	.	Atlas-SNP
POU2AF1	5450	hgsc.bcm.edu	hg19	11	111225126	111225126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POU2AF1	NM_006235	exon5	c.T631C	p.S211P	GGATAGAGATGGG	.	199.0	8.0	155.0	0.0	.	23	.	.	Atlas-SNP
SIK3	23387	hgsc.bcm.edu	hg19	11	116744713	116744713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIK3	NM_025164	exon12	c.A1313G	p.Q438R	GGAGCCTGGGGGT	.	127.0	31.0	90.0	0.0	.	112	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117222658	117222658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CEP164,caecum,carcinoma,0,1	CEP164	NM_001271933	exon4	c.A347G	p.K116R	AAAAAAAGGAAAA	.	70.0	6.0	38.0	0.0	.	121	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	hg19	11	117782565	117782565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMPRSS13	NM_001206790	exon6	c.A820G	p.T274A	CGGTTGTCCGGTG	.	86.0	4.0	52.0	0.0	.	75	.	.	Atlas-SNP
CLMP	79827	hgsc.bcm.edu	hg19	11	122968546	122968546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLMP	NM_024769	exon2	c.A143G	p.D48G	TCAATATCCAGAG	.	127.0	6.0	97.0	0.0	.	39	.	.	Atlas-SNP
NTM	50863	hgsc.bcm.edu	hg19	11	132177637	132177637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NTM	NM_001144059	exon4	c.A581G	p.E194G	CCAGGGAGCAGTC	.	115.0	5.0	50.0	0.0	.	253	.	.	Atlas-SNP
TEAD4	7004	hgsc.bcm.edu	hg19	12	3128311	3128311	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEAD4	NM_003213	exon8	c.T558C	p.A186A	CTATGCTGTCCAG	.	92.0	5.0	115.0	0.0	.	45	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9349247	9349247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PZP	NM_002864	exon9	c.A902G	p.H301R	TTGGTGTGTACTT	.	68.0	4.0	84.0	0.0	.	422	.	.	Atlas-SNP
CLEC1B	51266	hgsc.bcm.edu	hg19	12	10147781	10147781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLEC1B	NM_016509	exon5	c.A503G	p.E168G	CAGACCTCATTCG	.	36.0	4.0	56.0	0.0	.	39	.	.	Atlas-SNP
TAS2R8	50836	hgsc.bcm.edu	hg19	12	10958681	10958681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAS2R8	NM_023918	exon1	c.T899C	p.L300P	CATGTCAGCATTC	.	127.0	7.0	127.0	0.0	.	42	.	.	Atlas-SNP
PLBD1	79887	hgsc.bcm.edu	hg19	12	14693776	14693776	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLBD1	NM_024829	exon4	c.A480G	p.R160R	TGTATGTCTCCAA	.	116.0	5.0	170.0	0.0	.	36	.	.	Atlas-SNP
PLCZ1	89869	hgsc.bcm.edu	hg19	12	18872429	18872429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCZ1	NM_033123	exon5	c.T505C	p.S169P	TATGTGAAGATGA	.	80.0	4.0	104.0	0.0	.	107	.	.	Atlas-SNP
PLCZ1	89869	hgsc.bcm.edu	hg19	12	18876315	18876315	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCZ1	NM_033123	exon4	c.A297G	p.E99E	ATATTGTTCTTGT	.	88.0	4.0	119.0	0.0	.	107	.	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	hg19	12	22012588	22012588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCC9	NM_005691	exon20	c.A2437G	p.S813G	CCCCACTCAGGTT	.	62.0	5.0	78.0	0.0	.	411	.	.	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25368464	25368464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRAS	NM_033360	exon5	c.A481G	p.R161G	TCTCCCTCACCAA	.	67.0	4.0	138.0	0.0	.	30930	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26809378	26809378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITPR2	NM_002223	exon19	c.T2296C	p.S766P	CATCCGACACACA	.	83.0	4.0	104.0	0.0	.	270	.	.	Atlas-SNP
SENP1	29843	hgsc.bcm.edu	hg19	12	48477423	48477423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SENP1	NM_001267594	exon6	c.T503C	p.L168P	CTCAAAAGACTTC	.	100.0	4.0	124.0	0.0	.	44	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50532384	50532384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_147190	exon5	c.A509G	p.D170G	CGGATGTCCCAGA	.	109.0	5.0	101.0	0.0	.	.	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50749223	50749223	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM186A	NM_001145475	exon4	c.A1392G	p.K464K	TGTGGCTTTTTTG	.	107.0	5.0	78.0	0.0	.	181	.	.	Atlas-SNP
CSAD	51380	hgsc.bcm.edu	hg19	12	53553669	53553669	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSAD	NM_001244706	exon7	c.519+2T>C	.	GGTCCTACCTCCA	.	101.0	5.0	107.0	0.0	.	66	.	.	Atlas-SNP
ATP5G2	517	hgsc.bcm.edu	hg19	12	54063089	54063089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP5G2	NM_005176	exon4	c.T325C	p.S109P	CAAGTGAGGTAAG	.	69.0	4.0	62.0	0.0	.	16	.	.	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54796806	54796806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGA5	NM_002205	exon19	c.A1943G	p.D648G	ATGTTGTCTTCTC	.	113.0	5.0	108.0	0.0	.	99	.	.	Atlas-SNP
DGKA	1606	hgsc.bcm.edu	hg19	12	56346928	56346928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DGKA	NM_201554	exon22	c.T2047C	p.S683P	AAGTGCTCTGAGA	.	99.0	6.0	86.0	0.0	.	70	.	.	Atlas-SNP
PA2G4	5036	hgsc.bcm.edu	hg19	12	56503708	56503708	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PA2G4	NM_006191	exon7	c.A618G	p.T206T	TCCCACAGACCAG	.	113.0	5.0	105.0	0.0	.	24	.	.	Atlas-SNP
MYL6	4637	hgsc.bcm.edu	hg19	12	56553921	56553921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYL6	NM_079423	exon4	c.T338C	p.L113P	ATGTTCTTGTCAC	.	84.0	4.0	75.0	0.0	.	16	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56997486	56997486	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2A	NM_013449	exon18	c.3045-2A>G	.	TCAGCCTTGAAAT	.	77.0	4.0	67.0	0.0	.	263	.	.	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	hg19	12	57974761	57974761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIF5A	NM_004984	exon24	c.T2561C	p.L854P	CAGATCTGCGTTG	.	92.0	4.0	74.0	0.0	.	143	.	.	Atlas-SNP
SRGAP1	57522	hgsc.bcm.edu	hg19	12	64472776	64472776	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRGAP1	NM_020762	exon9	c.C1203T	p.C401C	TGAATGCTTCCAG	.	83.0	4.0	78.0	0.0	.	146	.	.	Atlas-SNP
C12orf66	144577	hgsc.bcm.edu	hg19	12	64609570	64609570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C12orf66	NM_152440	exon2	c.A409G	p.M137V	TCTCCATCCGAGC	.	115.0	5.0	117.0	0.0	.	28	.	.	Atlas-SNP
TBC1D15	64786	hgsc.bcm.edu	hg19	12	72300901	72300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D15	NM_022771	exon12	c.T1334C	p.M445T	ACTGTATGTATGA	.	97.0	4.0	89.0	0.0	.	99	.	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85264404	85264404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC6A15	NM_182767	exon9	c.A1348G	p.M450V	GTGTCATCGCTTC	.	80.0	4.0	97.0	0.0	.	159	.	.	Atlas-SNP
C12orf50	160419	hgsc.bcm.edu	hg19	12	88383079	88383079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C12orf50	NM_152589	exon8	c.A662G	p.E221G	TCTTTCTCTTCAG	.	60.0	4.0	44.0	0.0	.	70	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112694221	112694221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001109662	exon21	c.A2798G	p.D933G	TAGTTGTCTCTGA	.	123.0	5.0	87.0	0.0	.	.	.	.	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112888306	112888306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN11	NM_080601	exon3	c.A322G	p.T108A	GATCCTACCTCTG	.	97.0	4.0	70.0	0.0	.	623	.	.	Atlas-SNP
HIP1R	9026	hgsc.bcm.edu	hg19	12	123340451	123340451	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HIP1R	NM_003959	exon13	c.1128+1G>T	.	CTGGAGGTGCGGG	.	118.0	7.0	85.0	0.0	.	68	.	.	Atlas-SNP
HIP1R	9026	hgsc.bcm.edu	hg19	12	123340452	123340452	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HIP1R	NM_003959	exon13	c.1128+2T>G	.	TGGAGGTGCGGGG	.	115.0	9.0	84.0	0.0	.	68	.	.	Atlas-SNP
VPS37B	79720	hgsc.bcm.edu	hg19	12	123352099	123352099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS37B	NM_024667	exon4	c.T422C	p.V141A	TGATAGACATCAA	.	86.0	4.0	80.0	0.0	.	26	.	.	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	hg19	13	25480336	25480336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CENPJ	NM_018451	exon7	c.T1840C	p.S614P	TGGAAGACATCCG	.	87.0	6.0	103.0	0.0	.	116	.	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	hg19	13	33684128	33684128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STARD13	NM_178006	exon12	c.T2929C	p.W977R	CGTCCCACAGGTG	.	114.0	5.0	145.0	0.0	.	100	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38213437	38213437	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TRPC4_ENST00000379681,NS,carcinoma,0,2	TRPC4	NM_001135956	exon9	c.1885-1G>A	.	TCGCCTCTGAAAA	.	54.0	3.0	39.0	0.0	.	389	.	.	Atlas-SNP
COG6	57511	hgsc.bcm.edu	hg19	13	40297514	40297514	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG6	NM_001145079	exon16	c.T1629G	p.Y543X	CTCTTATGTTTTA	.	83.0	5.0	98.0	0.0	.	49	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42877272	42877272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP11	NM_016248	exon8	c.A4390G	p.S1464G	GTTCACAGCATAA	.	64.0	5.0	95.0	0.0	.	146	.	.	Atlas-SNP
PHF11	51131	hgsc.bcm.edu	hg19	13	50098318	50098318	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHF11	NM_001040443	exon8	c.A735G	p.P245P	AATTCCAGAAAAA	.	88.0	4.0	145.0	0.0	.	20	.	.	Atlas-SNP
LECT1	11061	hgsc.bcm.edu	hg19	13	53277943	53277943	+	Silent	SNP	C	C	T	rs368102754		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LECT1	NM_007015	exon7	c.G792A	p.Q264Q	TTCCTGCTGCTGT	.	77.0	4.0	74.0	0.0	.	44	.	.	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	hg19	13	98658548	98658548	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IPO5	NM_002271	exon17	c.A1716G	p.R572R	TCTGAGAGGAAAA	.	211.0	12.0	113.0	0.0	.	90	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110827094	110827094	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL4A1	NM_001845	exon38	c.A3201G	p.G1067G	TTGATCTCCCTGC	.	94.0	6.0	62.0	0.0	.	372	.	.	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20215940	20215940	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	OR4Q3,NS,carcinoma,0,1	OR4Q3	NM_172194	exon1	c.C354T	p.V118V	GACAGTCATGGCC	.	145.0	10.0	139.0	0.0	.	117	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20897683	20897683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KLHL33	NM_001109997	exon3	c.A1027G	p.N343D	CAGGGTTGTAGGT	.	73.0	4.0	80.0	0.0	.	37	.	.	Atlas-SNP
PRMT5	10419	hgsc.bcm.edu	hg19	14	23393312	23393312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRMT5	NM_006109	exon12	c.A1280G	p.E427G	GCTTTCTCTGGAG	.	117.0	5.0	110.0	0.0	.	101	.	.	Atlas-SNP
IPO4	79711	hgsc.bcm.edu	hg19	14	24653232	24653232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IPO4	NM_024658	exon18	c.T1841C	p.L614P	AGTGACAGCAGCA	.	100.0	4.0	80.0	0.0	.	74	.	.	Atlas-SNP
TM9SF1	10548	hgsc.bcm.edu	hg19	14	24662001	24662001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TM9SF1	NM_001014842	exon3	c.A820G	p.T274A	AGGTGGTCTCCTC	.	123.0	5.0	137.0	0.0	.	58	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24805506	24805506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RIPK3	NM_006871	exon10	c.G1432A	p.G478S	CCAAGCCCCATGT	.	98.0	37.0	88.0	0.0	.	43	.	.	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	hg19	14	45571779	45571779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRPF39	NM_017922	exon5	c.A617G	p.D206G	GTTCTGACAGACT	.	90.0	4.0	98.0	0.0	.	46	.	.	Atlas-SNP
SOS2	6655	hgsc.bcm.edu	hg19	14	50647366	50647366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS2	NM_006939	exon7	c.A893G	p.Q298R	ATGTCCTGTGATA	.	56.0	4.0	48.0	0.0	.	195	.	.	Atlas-SNP
PYGL	5836	hgsc.bcm.edu	hg19	14	51375542	51375542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PYGL	NM_002863	exon18	c.A2309G	p.D770G	CACCTGTCATGAT	.	93.0	5.0	109.0	0.0	.	77	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56126388	56126388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KTN1	NM_004986	exon31	c.C2966T	p.S989F	AGGCATCTTCTTT	.	97.0	5.0	59.0	0.0	.	147	.	.	Atlas-SNP
AP5M1	55745	hgsc.bcm.edu	hg19	14	57741096	57741096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_018229	exon2	c.A209G	p.E70G	TCGTTGAGAGTCG	.	114.0	5.0	105.0	0.0	.	.	.	.	Atlas-SNP
SLC38A6	145389	hgsc.bcm.edu	hg19	14	61497161	61497161	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC38A6	NM_153811	exon6	c.404-2A>G	.	TTTTGCAGCTATG	.	97.0	5.0	112.0	0.0	.	87	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72152235	72152235	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIPA1L1	NM_015556	exon10	c.T3261C	p.S1087S	GCAGAGTCCCATG	.	97.0	5.0	88.0	0.0	.	219	.	.	Atlas-SNP
FAM161B	145483	hgsc.bcm.edu	hg19	14	74409383	74409383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM161B	NM_152445	exon4	c.A1150G	p.R384G	GGGCTCTCATTTG	.	70.0	4.0	68.0	0.0	.	67	.	.	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	hg19	14	77493060	77493060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IRF2BPL	NM_024496	exon1	c.A1076G	p.E359G	AGGCTCTCGCTCA	.	100.0	5.0	66.0	0.0	.	40	.	.	Atlas-SNP
AHSA1	10598	hgsc.bcm.edu	hg19	14	77935521	77935521	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	AHSA1,NS,carcinoma,0,1	AHSA1	NM_012111	exon9	c.C946A	p.R316R	CGGACGCGACAGG	.	166.0	0.0	163.0	0.0	.	24	.	.	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	hg19	14	81970628	81970628	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEL1L	NM_001244984	exon5	c.A531G	p.R177R	CTGCCGTCTCTTA	.	142.0	6.0	146.0	0.0	.	67	.	.	Atlas-SNP
GALC	2581	hgsc.bcm.edu	hg19	14	88429767	88429767	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALC	NM_000153	exon10	c.T1122C	p.T374T	GCCATCAGTCAGA	.	102.0	6.0	90.0	0.0	.	48	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89172628	89172628	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EML5	NM_183387	exon11	c.A1800G	p.K600K	AGCATCTTTCAGT	.	87.0	4.0	96.0	0.0	.	141	.	.	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93712578	93712578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BTBD7	NM_001002860	exon10	c.A2176G	p.T726A	TCATTGTCAAGAG	.	130.0	6.0	113.0	0.0	.	112	.	.	Atlas-SNP
DDX24	57062	hgsc.bcm.edu	hg19	14	94519409	94519409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX24	NM_020414	exon8	c.A2243G	p.H748R	GAGTTGTGCAGGC	.	81.0	4.0	106.0	0.0	.	82	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96761480	96761480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATG2B	NM_018036	exon36	c.T5243C	p.V1748A	CAGGTGACATCAG	.	89.0	5.0	110.0	0.0	.	169	.	.	Atlas-SNP
CCNK	8812	hgsc.bcm.edu	hg19	14	99976694	99976694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCNK	NM_001099402	exon11	c.T1318C	p.S440P	TACATGTCTGGAG	.	139.0	6.0	130.0	0.0	.	32	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102431079	102431079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DYNC1H1	NM_001376	exon1	c.A51G	p.E17E	ATTGGAAGTGTCG	.	43.0	4.0	25.0	0.0	.	395	.	.	Atlas-SNP
AMN	81693	hgsc.bcm.edu	hg19	14	103395267	103395267	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AMN	NM_030943	exon5	c.T468C	p.P156P	CGGCCCTGGCGCT	.	53.0	4.0	32.0	0.0	.	13	.	.	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	hg19	14	103414077	103414077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDC42BPB	NM_006035	exon27	c.A3512G	p.D1171G	GGAATATCTCGGC	.	96.0	4.0	65.0	0.0	.	123	.	.	Atlas-SNP
MTA1	9112	hgsc.bcm.edu	hg19	14	105916421	105916421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	MTA1,NS,carcinoma,0,1	MTA1	NM_004689	exon5	c.C268T	p.P90S	GAGAACCCGGAAA	.	157.0	0.0	179.0	0.0	.	61	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29397672	29397672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APBA2	NM_005503	exon10	c.A1615G	p.S539G	GACTTGAGCCAGA	.	123.0	5.0	86.0	0.0	.	132	.	.	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	hg19	15	34649310	34649310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	C15orf55_ENST00000333756,lymph_node,lymphoid_neoplasm,0,1	C15orf55	NM_175741	exon7	c.A3017G	p.K1006R	AGAAAAAGAAAAA	.	56.0	3.0	55.0	0.0	.	110	.	.	Atlas-SNP
ATPBD4	89978	hgsc.bcm.edu	hg19	15	35742950	35742950	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATPBD4	NM_080650	exon5	c.A441G	p.E147E	CAAATCTTCCTGG	.	96.0	4.0	112.0	0.0	.	30	.	.	Atlas-SNP
NDUFAF1	51103	hgsc.bcm.edu	hg19	15	41688824	41688824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDUFAF1	NM_016013	exon2	c.G434T	p.G145V	CTGCCTCCAATCG	.	270.0	94.0	250.0	0.0	.	39	.	.	Atlas-SNP
ITPKA	3706	hgsc.bcm.edu	hg19	15	41794627	41794627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITPKA	NM_002220	exon5	c.T1036C	p.F346L	ACCGACTTCAAGA	.	96.0	5.0	79.0	0.0	.	19	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41797008	41797008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LTK	NM_002344	exon17	c.T2083C	p.F695L	CCAGGAAGGCCTC	.	99.0	4.0	76.0	0.0	.	117	.	.	Atlas-SNP
UBR1	197131	hgsc.bcm.edu	hg19	15	43314950	43314950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBR1	NM_174916	exon26	c.A2789G	p.Q930R	GCTTTTTGAAGCT	.	65.0	4.0	54.0	0.0	.	124	.	.	Atlas-SNP
MYO5C	55930	hgsc.bcm.edu	hg19	15	52571842	52571842	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5C	NM_018728	exon3	c.T168C	p.S56S	AGGCAGAGATTCT	.	78.0	6.0	61.0	0.0	.	162	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	hg19	15	52645812	52645812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO5A	NM_000259	exon27	c.A3611G	p.E1204G	AGTGACTCATATT	.	151.0	7.0	139.0	0.0	.	145	.	.	Atlas-SNP
GCOM1	145781	hgsc.bcm.edu	hg19	15	57967220	57967220	+	Missense_Mutation	SNP	G	G	C	rs146505887	bycluster;byfrequency;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	GCOM1_ENST00000574161,NS,carcinoma,0,2	GCOM1	NM_001018090	exon12	c.G1258C	p.E420Q	AAGACTGAAGTGG	.	104.0	0.0	104.0	0.0	.	66	.	G|0.999;A|0.001	Atlas-SNP
GCNT3	9245	hgsc.bcm.edu	hg19	15	59910958	59910958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GCNT3	NM_004751	exon3	c.A521G	p.E174G	TCAAAGAGGCGGT	.	93.0	4.0	93.0	0.0	.	42	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	62948266	62948266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLN2	NM_015059	exon5	c.T641G	p.L214R	TGCAGCTGAACTT	.	146.0	6.0	133.0	0.0	.	253	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65689174	65689174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGDCC4	NM_020962	exon6	c.T995C	p.L332P	TCACCCAGCACAC	.	82.0	4.0	36.0	0.0	.	95	.	.	Atlas-SNP
VWA9	81556	hgsc.bcm.edu	hg19	15	65871932	65871932	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VWA9	NM_001207058	exon12	c.T1317C	p.A439A	CATGTCAGCCACC	.	110.0	5.0	98.0	0.0	.	15	.	.	Atlas-SNP
NOX5	79400	hgsc.bcm.edu	hg19	15	69331259	69331259	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOX5	NM_024505	exon9	c.T1434C	p.Y478Y	CTTGTATCTGAAC	.	165.0	7.0	148.0	0.0	.	60	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72193622	72193622	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO9A	NM_006901	exon23	c.C3060T	p.L1020L	TCTGCGGAGCACC	.	141.0	57.0	132.0	0.0	.	203	.	.	Atlas-SNP
STRA6	64220	hgsc.bcm.edu	hg19	15	74473791	74473791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STRA6	NM_001199042	exon17	c.T1646C	p.L549P	GCATAGAGCACTC	.	100.0	4.0	67.0	0.0	.	66	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86124122	86124122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP13	NM_007200	exon7	c.T2823C	p.A941A	AAATGCTCTCTCT	.	89.0	4.0	100.0	0.0	.	394	.	.	Atlas-SNP
KLHL25	64410	hgsc.bcm.edu	hg19	15	86312123	86312123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KLHL25	NM_022480	exon2	c.T919C	p.C307R	TGTCACACATGAA	.	123.0	5.0	140.0	0.0	.	58	.	.	Atlas-SNP
CRTC3	64784	hgsc.bcm.edu	hg19	15	91185296	91185296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRTC3	NM_022769	exon15	c.T1784C	p.L595P	ACGGACTCAACAT	.	162.0	7.0	173.0	0.0	.	47	.	.	Atlas-SNP
ZNF598	90850	hgsc.bcm.edu	hg19	16	2053113	2053113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF598	NM_178167	exon5	c.T344C	p.L115P	TGCTGCAGCAGCT	.	59.0	4.0	52.0	0.0	.	55	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2812846	2812846	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRRM2	NM_016333	exon11	c.T2317C	p.L773L	TCTCGCTTGTCTT	.	63.0	4.0	67.0	0.0	.	263	.	.	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3079412	3079412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC64B	NM_001103175	exon6	c.A976G	p.T326A	TTCGGGTCTTTGG	.	57.0	4.0	32.0	0.0	.	19	.	.	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4016885	4016885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ADCY9,NS,carcinoma,0,1	ADCY9	NM_001116	exon11	c.G2953A	p.V985I	AGAAGACGAGAAC	.	69.0	3.0	60.0	0.0	.	151	.	.	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	hg19	16	10788409	10788409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TEKT5	NM_144674	exon1	c.T322C	p.S108P	GCCGGGAGGCCTC	.	79.0	5.0	53.0	0.0	.	66	.	.	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	hg19	16	11272336	11272336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLEC16A	NM_015226	exon23	c.T2951C	p.V984A	GCCTCGTCCCTGC	.	94.0	4.0	67.0	0.0	.	101	.	.	Atlas-SNP
MKL2	57496	hgsc.bcm.edu	hg19	16	14346343	14346343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKL2	NM_014048	exon15	c.A2537G	p.Q846R	GCACACAGGCCCC	.	82.0	4.0	85.0	0.0	.	103	.	.	Atlas-SNP
ACSM1	116285	hgsc.bcm.edu	hg19	16	20682956	20682956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACSM1	NM_052956	exon4	c.A649G	p.T217A	CCAAGGTCTTTGA	.	114.0	5.0	81.0	0.0	.	118	.	.	Atlas-SNP
ACSM1	116285	hgsc.bcm.edu	hg19	16	20696513	20696513	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACSM1	NM_052956	exon3	c.403+2T>C	.	TCACTGACCTGTT	.	96.0	4.0	100.0	0.0	.	118	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	20994094	20994094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DNAH3_ENST00000261383,caecum,carcinoma,0,2	DNAH3	NM_017539	exon49	c.T7808C	p.V2603A	TTAGCCACCAACT	.	64.0	3.0	46.0	1.0	.	1142	.	.	Atlas-SNP
COG7	91949	hgsc.bcm.edu	hg19	16	23404640	23404640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG7	NM_153603	exon15	c.T1916C	p.L639P	AGATTCAGGGGGA	.	66.0	4.0	51.0	0.0	.	62	.	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	hg19	16	23481435	23481435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GGA2	NM_015044	exon15	c.T1502C	p.L501P	AAGTGGAGCAGAA	.	71.0	5.0	87.0	0.0	.	49	.	.	Atlas-SNP
ARHGAP17	55114	hgsc.bcm.edu	hg19	16	24950880	24950880	+	Missense_Mutation	SNP	C	C	A	rs78457529	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP17	NM_001006634	exon17	c.G1529T	p.R510L	CCACCCCGCCGGT	.	81.0	4.0	63.0	0.0	.	138	.	C|0.992;T|0.008	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30976976	30976976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SETD1A	NM_014712	exon8	c.G1774A	p.G592S	CGGGGTGGCTCAC	.	83.0	34.0	55.0	0.0	.	143	.	.	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	hg19	16	31088375	31088375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZNF646,NS,carcinoma,0,1	ZNF646	NM_014699	exon2	c.T730C	p.C244R	AGTCAGTGTGGCA	.	99.0	4.0	76.0	1.0	.	133	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47622844	47622844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKB	NM_000293	exon10	c.T899C	p.I300T	CCTGCATCAGTTA	.	79.0	4.0	93.0	0.0	.	298	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49672029	49672029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF423	NM_015069	exon4	c.A1034G	p.H345R	TGCCGGTGGCTGT	.	89.0	6.0	72.0	0.0	.	463	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51173561	51173561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL1	NM_002968	exon2	c.C2572T	p.L858F	TCTCGAGGGGCAA	.	183.0	8.0	155.0	0.0	.	301	.	.	Atlas-SNP
NUP93	9688	hgsc.bcm.edu	hg19	16	56867148	56867148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP93	NM_014669	exon13	c.A1367G	p.N456S	CGGTGAACCAGCA	.	150.0	6.0	127.0	0.0	.	75	.	.	Atlas-SNP
RSPRY1	89970	hgsc.bcm.edu	hg19	16	57254758	57254758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RSPRY1	NM_133368	exon9	c.A1016G	p.E339G	GCTTAGAGGTAGG	.	125.0	5.0	128.0	0.0	.	49	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58562491	58562491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT1	NM_016284	exon44	c.A6341G	p.H2114R	CCATAATGGTAAT	.	71.0	4.0	61.0	0.0	.	359	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58608980	58608980	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT1	NM_206999	exon15	c.T1758C	p.A586A	AAGTGCAGCAAGG	.	90.0	4.0	82.0	0.0	.	359	.	.	Atlas-SNP
CBFB	865	hgsc.bcm.edu	hg19	16	67116231	67116231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CBFB	NM_001755	exon5	c.T515C	p.L172P	AGCTGCTGGCAGT	.	96.0	4.0	86.0	0.0	.	52	.	.	Atlas-SNP
HSF4	3299	hgsc.bcm.edu	hg19	16	67203201	67203201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSF4	NM_001040667	exon14	c.A1274G	p.E425G	TTCCAGAGCGGGG	.	72.0	4.0	59.0	0.0	.	33	.	.	Atlas-SNP
KCTD19	146212	hgsc.bcm.edu	hg19	16	67329298	67329298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCTD19	NM_001100915	exon9	c.T1259C	p.L420P	GACAGCAGTTCTG	.	82.0	4.0	67.0	0.0	.	82	.	.	Atlas-SNP
NFATC3	4775	hgsc.bcm.edu	hg19	16	68156826	68156826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFATC3	NM_173163	exon2	c.A1040G	p.Q347R	AAGATCAAGCTGC	.	75.0	4.0	71.0	0.0	.	190	.	.	Atlas-SNP
COG4	25839	hgsc.bcm.edu	hg19	16	70548316	70548316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG4	NM_015386	exon4	c.G466A	p.E156K	CCTGCTCATAATC	.	107.0	24.0	101.0	0.0	.	64	.	.	Atlas-SNP
BCAR1	9564	hgsc.bcm.edu	hg19	16	75269535	75269535	+	Missense_Mutation	SNP	G	G	T	rs376153187	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAR1	NM_001170714	exon6	c.C1400A	p.P467Q	TCTGCCGGGGCTT	.	153.0	10.0	134.0	0.0	.	184	.	.	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	hg19	16	77327037	77327037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS18	NM_199355	exon20	c.G3125T	p.G1042V	ACACAGCCCTCCT	.	80.0	23.0	62.0	0.0	.	270	.	.	Atlas-SNP
KIAA0513	9764	hgsc.bcm.edu	hg19	16	85112029	85112029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA0513	NM_014732	exon7	c.A791G	p.E264G	AAGACGAGAACAA	.	121.0	5.0	95.0	0.0	.	43	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88498350	88498350	+	Missense_Mutation	SNP	C	C	T	rs375045076		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZNF469,NS,carcinoma,0,1	ZNF469	NM_001127464	exon2	c.C4388T	p.T1463M	AGAAGACGGTGCC	.	60.0	4.0	50.0	0.0	.	121	.	.	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	hg19	16	89294754	89294754	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF778	NM_001201407	exon7	c.T2058C	p.S686S	CTCCTCTCACCTG	.	114.0	5.0	115.0	0.0	.	67	.	.	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	hg19	16	89839740	89839740	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCA	NM_000135	exon22	c.A1953G	p.G651G	GAGCTGTCCCAGG	.	91.0	4.0	101.0	0.0	.	99	.	.	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	hg19	16	89857899	89857899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCA	NM_000135	exon14	c.T1271C	p.L424P	CTGTCCAGCTGGC	.	82.0	4.0	62.0	0.0	.	99	.	.	Atlas-SNP
ACADVL	37	hgsc.bcm.edu	hg19	17	7123922	7123922	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACADVL	NM_001270447	exon5	c.274-1G>A	.	TGCCCAGGAATCT	.	65.0	4.0	93.0	0.0	.	43	.	.	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	hg19	17	7224736	7224736	+	Missense_Mutation	SNP	T	T	C	rs117553236	bycluster;by1000genomes;alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NEURL4	NM_032442	exon19	c.A3142G	p.M1048V	TGTGCATCGTGTC	.	82.0	6.0	106.0	0.0	.	192	.	T|0.996;G|0.004	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	hg19	17	7416095	7416095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR2A	NM_000937	exon28	c.A4609G	p.S1537G	ATAGGGAGTGGAA	.	48.0	4.0	57.0	0.0	.	157	.	.	Atlas-SNP
SHBG	6462	hgsc.bcm.edu	hg19	17	7536255	7536255	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SHBG	NM_001040	exon7	c.T1038C	p.R346R	AGGGCGTCTCTTC	.	43.0	4.0	63.0	0.0	.	21	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578457	7578457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TP53_ENST00000545858,NS,adenocarcinoma,0,2	TP53	NM_000546	exon5	c.G473A	p.R158H	ATGGCGCGGACGC	.	90.0	55.0	153.0	0.0	.	33396	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7674122	7674122	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH2	NM_020877	exon26	c.T4233C	p.S1411S	TCTGTCTACCATG	.	99.0	4.0	124.0	0.0	.	498	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7802659	7802659	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD3	NM_001005271	exon15	c.2521-2A>G	.	ACTCCCAGGGCCA	.	86.0	4.0	120.0	0.0	.	169	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11572530	11572530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH9	NM_001372	exon16	c.T2881C	p.S961P	ATACCATCTCTGG	.	105.0	5.0	149.0	0.0	.	695	.	.	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17700882	17700882	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAI1	NM_030665	exon3	c.C4620A	p.L1540L	GCGCCTCACTCGG	.	256.0	89.0	227.0	0.0	.	121	.	.	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	hg19	17	19451395	19451395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC47A1	NM_018242	exon4	c.T404C	p.L135P	TCTTTCTCAACAC	.	95.0	4.0	77.0	0.0	.	55	.	.	Atlas-SNP
SLC47A2	146802	hgsc.bcm.edu	hg19	17	19583316	19583316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC47A2	NM_152908	exon16	c.G1537T	p.A513S	TCTCTGCTCTCTG	.	86.0	28.0	64.0	0.0	.	61	.	.	Atlas-SNP
FOXN1	8456	hgsc.bcm.edu	hg19	17	26857795	26857795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FOXN1	NM_003593	exon5	c.A859G	p.S287G	AAGAACAGTAAAA	.	158.0	9.0	143.0	0.0	.	51	.	.	Atlas-SNP
SSH2	85464	hgsc.bcm.edu	hg19	17	27959313	27959313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSH2	NM_033389	exon15	c.T2818C	p.S940P	CCTCAGACCCACT	.	98.0	4.0	63.0	0.0	.	107	.	.	Atlas-SNP
CPD	1362	hgsc.bcm.edu	hg19	17	28791765	28791765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPD	NM_001304	exon21	c.T4076C	p.L1359P	AGTCCCTCCTAAG	.	97.0	6.0	80.0	0.0	.	89	.	.	Atlas-SNP
NLE1	54475	hgsc.bcm.edu	hg19	17	33460449	33460449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NLE1	NM_018096	exon11	c.T1283C	p.L428P	ACCAGGAGCCGAC	.	102.0	6.0	97.0	0.0	.	42	.	.	Atlas-SNP
THRA	7067	hgsc.bcm.edu	hg19	17	38230771	38230771	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THRA	NM_001190918	exon2	c.T30C	p.C10C	GGAGTGTGGGTCA	.	117.0	6.0	83.0	0.0	.	88	.	.	Atlas-SNP
WIPF2	147179	hgsc.bcm.edu	hg19	17	38430226	38430226	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WIPF2	NM_133264	exon6	c.T1155C	p.S385S	AGATTCTATCACC	.	68.0	24.0	52.0	0.0	.	55	.	.	Atlas-SNP
PTGES3L-AARSD1	100885850	hgsc.bcm.edu	hg19	17	41113229	41113229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTGES3L-AARSD1	NM_001136042	exon8	c.A833G	p.D278G	ATGTGGTCAAACC	.	156.0	8.0	114.0	0.0	.	15	.	.	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41582144	41582144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX8	NM_004941	exon12	c.A1679G	p.E560G	TCCTTGAGCAGAG	.	116.0	5.0	97.0	0.0	.	98	.	.	Atlas-SNP
ATXN7L3	56970	hgsc.bcm.edu	hg19	17	42273429	42273429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATXN7L3	NM_020218	exon6	c.A517G	p.R173G	TGGATCTTCGAGG	.	76.0	4.0	95.0	0.0	.	31	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45888158	45888158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OSBPL7	NM_145798	exon17	c.A1781G	p.E594G	AAGTTCTCAGACT	.	87.0	5.0	63.0	0.0	.	65	.	.	Atlas-SNP
HOXB2	3212	hgsc.bcm.edu	hg19	17	46622272	46622272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HOXB2	NM_002145	exon1	c.T2C	p.M1T	AAATTCATGGCTT	.	61.0	4.0	37.0	0.0	.	23	.	.	Atlas-SNP
RNF43	54894	hgsc.bcm.edu	hg19	17	56448298	56448298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,6	RNF43	NM_017763	exon3	c.C349A	p.R117S	AGGGGCGGGGGGC	.	129.0	0.0	82.0	0.0	.	157	.	.	Atlas-SNP
VMP1	81671	hgsc.bcm.edu	hg19	17	57808841	57808841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VMP1	NM_030938	exon2	c.C34T	p.R12C	CAGAGACGTGTAG	.	120.0	31.0	84.0	0.0	.	49	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61568576	61568576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACE	NM_000789	exon19	c.A2746G	p.T916A	GGCTGGACGCCCA	.	82.0	4.0	62.0	0.0	.	187	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62048557	62048557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN4A	NM_000334	exon5	c.T668C	p.V223A	CGCAGCACCCGGA	.	71.0	5.0	42.0	0.0	.	205	.	.	Atlas-SNP
GNA13	10672	hgsc.bcm.edu	hg19	17	63014373	63014373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNA13	NM_006572	exon3	c.C559T	p.P187S	TTACTGGTTCTCC	.	236.0	57.0	200.0	0.0	.	69	.	.	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65346373	65346373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSMD12	NM_002816	exon4	c.A377G	p.D126G	AGAGTATCAATTA	.	131.0	6.0	109.0	0.0	.	32	.	.	Atlas-SNP
FDXR	2232	hgsc.bcm.edu	hg19	17	72860316	72860316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FDXR	NM_001258012	exon9	c.A1085G	p.D362G	CGCCCATCTGGTG	.	93.0	7.0	54.0	0.0	.	68	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76075517	76075517	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TNRC6C	NM_018996	exon11	c.A3252G	p.A1084A	TGGAGCAGCACAA	.	149.0	6.0	88.0	0.0	.	173	.	.	Atlas-SNP
USP36	57602	hgsc.bcm.edu	hg19	17	76799861	76799861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,2	USP36	NM_025090	exon16	c.C2416G	p.Q806E	GGCTCTGGGGGGG	.	80.0	0.0	52.0	0.0	.	243	.	.	Atlas-SNP
CBX2	84733	hgsc.bcm.edu	hg19	17	77755868	77755868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CBX2	NM_032647	exon4	c.T556C	p.S186P	GCAGGGTCAAACT	.	131.0	6.0	72.0	0.0	.	50	.	.	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	hg19	17	77812826	77812826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CBX4	NM_003655	exon2	c.A97G	p.R33G	AGCCTCTCCATTT	.	91.0	5.0	54.0	0.0	.	40	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79094085	79094085	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AATK	NM_001080395	exon11	c.G3651C	p.L1217L	CTCGGACAGCAGG	.	173.0	39.0	105.0	0.0	.	102	.	.	Atlas-SNP
DUS1L	64118	hgsc.bcm.edu	hg19	17	80020818	80020818	+	Silent	SNP	A	A	G	rs372985546	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUS1L	NM_022156	exon5	c.T429C	p.P143P	CGTGACAGGAACA	.	55.0	4.0	47.0	0.0	.	25	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2750117	2750117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCHD1	NM_015295	exon31	c.C4004A	p.P1335H	TTGCCCCTAGGTA	.	94.0	23.0	106.0	0.0	.	88	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3151804	3151804	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYOM1	NM_003803	exon12	c.T1731C	p.G577G	GGAACGACCTTCG	.	98.0	4.0	91.0	0.0	.	192	.	.	Atlas-SNP
ZBTB14	7541	hgsc.bcm.edu	hg19	18	5291325	5291325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001243702	exon4	c.G882T	p.K294N	CTCATGCTTCCTC	.	122.0	43.0	115.0	0.0	.	.	.	.	Atlas-SNP
CEP76	79959	hgsc.bcm.edu	hg19	18	12673464	12673464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP76	NM_024899	exon12	c.A1880G	p.D627G	ACTTGGTCTCCAC	.	150.0	6.0	126.0	0.0	.	45	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21494402	21494402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAMA3	NM_198129	exon57	c.T7358C	p.V2453A	TGGCAGTTGTGGA	.	65.0	4.0	63.0	0.0	.	397	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21494698	21494698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAMA3	NM_198129	exon58	c.A7518G	p.G2506G	CAAAGGAGCCACA	.	113.0	5.0	109.0	0.0	.	397	.	.	Atlas-SNP
DSG2	1829	hgsc.bcm.edu	hg19	18	29125991	29125991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSG2	NM_001943	exon15	c.C2642T	p.T881I	AGAATACCTACTC	.	79.0	4.0	65.0	0.0	.	115	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31320093	31320093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASXL3	NM_030632	exon11	c.T2725C	p.S909P	TATATCTCATCAG	.	100.0	4.0	108.0	0.0	.	405	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43532416	43532416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EPG5	NM_020964	exon3	c.T1202C	p.L401P	CTACTGAGCAATG	.	100.0	4.0	91.0	0.0	.	199	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50278698	50278698	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCC	NM_005215	exon2	c.A366G	p.G122G	TTTAGGAGATTCT	.	163.0	7.0	146.0	0.0	.	360	.	.	Atlas-SNP
POLI	11201	hgsc.bcm.edu	hg19	18	51807238	51807238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLI	NM_007195	exon5	c.T761C	p.L254P	AACATCTTATTCA	.	76.0	4.0	74.0	0.0	.	132	.	.	Atlas-SNP
WDR7	23335	hgsc.bcm.edu	hg19	18	54547190	54547190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	WDR7,colon,carcinoma,0,1	WDR7	NM_015285	exon21	c.T3320C	p.V1107A	CAAGTGTCCCACA	.	131.0	6.0	92.0	0.0	.	166	.	.	Atlas-SNP
ST8SIA3	51046	hgsc.bcm.edu	hg19	18	55024466	55024466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ST8SIA3	NM_015879	exon3	c.A625G	p.T209A	CTTACCACCTTCA	.	92.0	4.0	69.0	0.0	.	73	.	.	Atlas-SNP
ST8SIA3	51046	hgsc.bcm.edu	hg19	18	55027237	55027237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ST8SIA3	NM_015879	exon4	c.A872G	p.N291S	GGAAAAACAAACA	.	94.0	4.0	101.0	0.0	.	73	.	.	Atlas-SNP
ARID3A	1820	hgsc.bcm.edu	hg19	19	932477	932477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARID3A	NM_005224	exon3	c.A428G	p.E143G	AGGAGGAGGAGGA	.	71.0	4.0	48.0	0.0	.	35	.	.	Atlas-SNP
MKNK2	2872	hgsc.bcm.edu	hg19	19	2041918	2041918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKNK2	NM_017572	exon11	c.T866C	p.L289P	CCGCTGAGTAGGA	.	54.0	4.0	71.0	0.0	.	56	.	.	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	hg19	19	2123875	2123875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AP3D1	NM_001261826	exon10	c.T860C	p.L287P	GAGATGAGCACTG	.	147.0	8.0	136.0	0.0	.	81	.	.	Atlas-SNP
JSRP1	126306	hgsc.bcm.edu	hg19	19	2254202	2254202	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JSRP1	NM_144616	exon4	c.G246A	p.R82R	TTTCAGCCTCTCC	.	89.0	4.0	72.0	0.0	.	18	.	.	Atlas-SNP
ZNF556	80032	hgsc.bcm.edu	hg19	19	2877368	2877368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF556	NM_024967	exon4	c.A412G	p.K138E	CTGCGCAAGAATT	.	95.0	4.0	119.0	0.0	.	73	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11150224	11150224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCA4	NM_001128849	exon30	c.T4261C	p.S1421P	CGTGCGTCAAAGG	.	112.0	5.0	121.0	0.0	.	502	.	.	Atlas-SNP
ELAVL3	1995	hgsc.bcm.edu	hg19	19	11565448	11565448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELAVL3	NM_001420	exon7	c.A997G	p.T333A	AGTTGGTCATGGT	.	127.0	7.0	108.0	0.0	.	58	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15292438	15292438	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	NOTCH3,NS,carcinoma,0,1	NOTCH3	NM_000435	exon17	c.C2741G	p.P914R	TAGCCTGGCGGGC	.	296.0	0.0	281.0	0.0	.	340	.	.	Atlas-SNP
CYP4F12	66002	hgsc.bcm.edu	hg19	19	15807241	15807241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP4F12	NM_023944	exon12	c.T1316C	p.V439A	TGCAGGTCTACGA	.	127.0	6.0	95.0	0.0	.	89	.	.	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17758258	17758258	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UNC13A	NM_001080421	exon16	c.A1860G	p.T620T	GTTCTGTGTCCGG	.	109.0	5.0	117.0	0.0	.	299	.	.	Atlas-SNP
PDE4C	5143	hgsc.bcm.edu	hg19	19	18322644	18322644	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE4C	NM_000923	exon15	c.A1716G	p.G572G	GCGGTCTCCCTGC	.	135.0	7.0	120.0	0.0	.	80	.	.	Atlas-SNP
PBX4	80714	hgsc.bcm.edu	hg19	19	19681414	19681414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PBX4	NM_025245	exon3	c.A422G	p.E141G	TCTAGCTCAGAGT	.	123.0	6.0	90.0	0.0	.	34	.	.	Atlas-SNP
ZNF626	199777	hgsc.bcm.edu	hg19	19	20807353	20807353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZNF626_ENST00000392298,bladder,carcinoma,0,1	ZNF626	NM_001076675	exon4	c.A1330G	p.R444G	TTCTCCTATGTGT	.	39.0	4.0	24.0	0.0	.	121	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935844	30935844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF536	NM_014717	exon2	c.C1375T	p.P459S	GAGCTGCCCATGA	.	73.0	4.0	82.0	0.0	.	424	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	31039960	31039960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZNF536,colon,carcinoma,0,1	ZNF536	NM_014717	exon4	c.T3434C	p.V1145A	AGGATGTCCCCAT	.	113.0	6.0	97.0	0.0	.	424	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36048637	36048637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP4A	NM_000704	exon11	c.A1613G	p.E538G	GGCAGCTCCTGGC	.	155.0	9.0	127.0	0.0	.	123	.	.	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	hg19	19	36333298	36333298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPHS1	NM_004646	exon18	c.T2489C	p.L830P	AGACGGAGCAGCC	.	71.0	5.0	37.0	0.0	.	165	.	.	Atlas-SNP
GRIK5	2901	hgsc.bcm.edu	hg19	19	42510910	42510910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GRIK5	NM_002088	exon15	c.T1924C	p.F642L	TGAGGAAGGCGGC	.	94.0	4.0	84.0	0.0	.	220	.	.	Atlas-SNP
ERCC2	2068	hgsc.bcm.edu	hg19	19	45867515	45867515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERCC2	NM_000400	exon9	c.A793G	p.T265A	GCAGGGTCTCCAG	.	114.0	6.0	83.0	0.0	.	78	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47422735	47422735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_004491	exon1	c.A803G	p.Q268R	AGAGTCAGCAGAT	.	99.0	5.0	73.0	0.0	.	.	.	.	Atlas-SNP
SLC6A16	28968	hgsc.bcm.edu	hg19	19	49813309	49813309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC6A16	NM_014037	exon4	c.T688C	p.S230P	CACTAGAGTTCAT	.	147.0	6.0	160.0	0.0	.	62	.	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	hg19	19	52002448	52002448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIGLEC12	NM_053003	exon4	c.A1111G	p.T371A	AGACAGTCATGGT	.	141.0	6.0	137.0	0.0	.	243	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52569542	52569542	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF841	NM_001136499	exon7	c.T1593C	p.H531H	TCTCTGATGTACA	.	36.0	4.0	52.0	0.0	.	183	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53645764	53645764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF347	NM_001172675	exon5	c.A320G	p.K107R	TTACTCTTCCCTT	.	119.0	5.0	118.0	0.0	.	87	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53855284	53855284	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZNF845,NS,carcinoma,0,1	ZNF845	NM_138374	exon4	c.G1356A	p.S452S	CAAATCGAACCTT	.	55.0	3.0	45.0	1.0	.	101	.	.	Atlas-SNP
ZNF761	388561	hgsc.bcm.edu	hg19	19	53959189	53959189	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF761	NM_001008401	exon7	c.T1428C	p.R476R	TTTCCGTTTCAAA	.	39.0	10.0	41.0	0.0	.	104	.	.	Atlas-SNP
DPRX	503834	hgsc.bcm.edu	hg19	19	54140025	54140025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DPRX	NM_001012728	exon3	c.T359A	p.V120E	GCCTGGTGTACAC	.	160.0	52.0	158.0	0.0	.	34	.	.	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	hg19	19	55445101	55445101	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NLRP7	NM_001127255	exon8	c.A2478G	p.E826E	ACAGTTTTCCAAC	.	97.0	4.0	78.0	0.0	.	411	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56028719	56028719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSC5D	NM_001144950	exon14	c.T3076C	p.S1026P	TCTGACTCCAGTC	.	99.0	5.0	94.0	0.0	.	65	.	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	hg19	19	57326604	57326604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PEG3	NM_001146184	exon9	c.A3206G	p.D1069G	TCCCCATCAGTAT	.	115.0	5.0	84.0	0.0	.	414	.	.	Atlas-SNP
CSNK2A1	1457	hgsc.bcm.edu	hg19	20	469379	469379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSNK2A1	NM_001895	exon10	c.A767G	p.D256G	ATATAGTCATATA	.	111.0	6.0	73.0	0.0	.	36	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9538333	9538333	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PAK7	NM_177990	exon7	c.T1665C	p.A555A	GGAGAGAGCTCTC	.	96.0	4.0	79.0	0.0	.	194	.	.	Atlas-SNP
MGME1	92667	hgsc.bcm.edu	hg19	20	17950850	17950850	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_052865	exon2	c.T348C	p.D116D	AAGTGATCCTTCA	.	119.0	5.0	131.0	0.0	.	.	.	.	Atlas-SNP
PXMP4	11264	hgsc.bcm.edu	hg19	20	32302502	32302502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PXMP4	NM_183397	exon2	c.A154G	p.T52A	GAAAGGTCATGAC	.	150.0	6.0	144.0	0.0	.	20	.	.	Atlas-SNP
EIF2S2	8894	hgsc.bcm.edu	hg19	20	32686360	32686360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF2S2	NM_003908	exon4	c.A377G	p.K126R	TTTTTCTTCTTTT	.	72.0	4.0	81.0	0.0	.	32	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34092346	34092346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP250	NM_007186	exon30	c.A6149G	p.E2050G	ATGAAGAGCTGAG	.	79.0	4.0	71.0	0.0	.	141	.	.	Atlas-SNP
TGIF2	60436	hgsc.bcm.edu	hg19	20	35219773	35219773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TGIF2	NM_021809	exon3	c.A653G	p.Q218R	AGCAGCAGGACCC	.	117.0	6.0	112.0	0.0	.	26	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40084597	40084597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD6	NM_032221	exon19	c.A2852G	p.E951G	TCCACCTCCATTT	.	119.0	5.0	137.0	0.0	.	312	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47342873	47342873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PREX1	NM_020820	exon5	c.T575C	p.L192P	GACAACAGGTAGC	.	89.0	5.0	126.0	0.0	.	441	.	.	Atlas-SNP
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57269500	57269500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPEPL1	NM_024663	exon3	c.T359C	p.V120A	CGGAGGTCTTTGC	.	107.0	5.0	69.0	0.0	.	36	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58489043	58489043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYCP2	NM_014258	exon11	c.G817A	p.G273R	TGTCTCCAAGCAT	.	148.0	6.0	126.0	0.0	.	204	.	.	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	hg19	20	58547020	58547020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH26	NM_177980	exon4	c.T235C	p.F79L	CAGCTGTTCAATA	.	70.0	4.0	104.0	0.0	.	229	.	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	hg19	20	61443731	61443731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OGFR	NM_007346	exon7	c.A764G	p.D255G	CCCTGGACTACTT	.	78.0	6.0	47.0	0.0	.	63	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61513462	61513462	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DIDO1	NM_001193369	exon16	c.A3846G	p.A1282A	GGGGGCTGCAGGT	.	104.0	5.0	75.0	0.0	.	321	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19704485	19704485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMPRSS15	NM_002772	exon14	c.T1570C	p.C524R	CTCCACAGTCCGC	.	92.0	5.0	73.0	0.0	.	189	.	.	Atlas-SNP
KRTAP19-8	728299	hgsc.bcm.edu	hg19	21	32410759	32410759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRTAP19-8	NM_001099219	exon1	c.A4G	p.S2G	AGTAGCTCATGGT	.	139.0	6.0	130.0	0.0	.	9	.	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	hg19	21	34053824	34053824	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNJ1	NM_203446	exon11	c.T1452C	p.A484A	TTCAAGAGCTCCA	.	112.0	5.0	104.0	0.0	.	253	.	.	Atlas-SNP
LCA5L	150082	hgsc.bcm.edu	hg19	21	40800338	40800338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LCA5L	NM_152505	exon4	c.G82A	p.A28T	TGCATGCTGCAGA	.	146.0	6.0	150.0	0.0	.	57	.	.	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	hg19	21	41143130	41143130	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	IGSF5,caecum,carcinoma,0,1	IGSF5	NM_001080444	exon4	c.C706A	p.R236R	GTGATTCGGTGTC	.	70.0	3.0	98.0	0.0	.	62	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41434820	41434820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSCAM	NM_001271534	exon28	c.A4895G	p.K1632R	AAACTCTTTGCAT	.	88.0	4.0	96.0	0.0	.	347	.	.	Atlas-SNP
AGPAT3	56894	hgsc.bcm.edu	hg19	21	45389012	45389012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGPAT3	NM_001037553	exon4	c.T362C	p.L121P	AGGTCCTCGCTAA	.	119.0	5.0	119.0	0.0	.	37	.	.	Atlas-SNP
PWP2	5822	hgsc.bcm.edu	hg19	21	45547852	45547852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PWP2	NM_005049	exon18	c.T2180C	p.I727T	TCCTCATCTACTC	.	90.0	4.0	69.0	0.0	.	64	.	.	Atlas-SNP
CECR1	51816	hgsc.bcm.edu	hg19	22	17662863	17662863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CECR1	NM_017424	exon8	c.T1289C	p.M430T	GTGGCCATCAGAG	.	72.0	4.0	64.0	0.0	.	77	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19188997	19188997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLTCL1	NM_001835	exon23	c.A3608G	p.D1203G	CAGCGGTCTCCAA	.	107.0	5.0	107.0	0.0	.	115	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19188998	19188998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLTCL1	NM_001835	exon23	c.G3607A	p.D1203N	AGCGGTCTCCAAC	.	106.0	5.0	105.0	0.0	.	115	.	.	Atlas-SNP
TANGO2	128989	hgsc.bcm.edu	hg19	22	20024329	20024329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TANGO2	NM_152906	exon2	c.T8C	p.I3T	TGTGCATCATCTT	.	125.0	5.0	98.0	0.0	.	4	.	.	Atlas-SNP
PRAME	23532	hgsc.bcm.edu	hg19	22	22892685	22892685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAME	NM_206954	exon5	c.A416G	p.N139S	GCCCTGTTTCCAG	.	78.0	21.0	112.0	0.0	.	78	.	.	Atlas-SNP
XBP1	7494	hgsc.bcm.edu	hg19	22	29195079	29195079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XBP1	NM_001079539	exon2	c.A290G	p.E97G	TCCAGCTCACTCA	.	112.0	6.0	86.0	0.0	.	37	.	.	Atlas-SNP
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32215113	32215113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEPDC5	NM_001242897	exon22	c.A1772G	p.Y591C	GTGGATACACGCC	.	140.0	8.0	130.0	0.0	.	266	.	.	Atlas-SNP
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32266729	32266729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DEPDC5	NM_001242896	exon34	c.A3484G	p.S1162G	GACAGCAGGTGAG	.	148.0	6.0	143.0	0.0	.	266	.	.	Atlas-SNP
SSTR3	6753	hgsc.bcm.edu	hg19	22	37602589	37602589	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSTR3	NM_001051	exon2	c.G1254T	p.L418L	GCCCTACAGGTAG	.	53.0	4.0	39.0	0.0	.	42	.	.	Atlas-SNP
SSTR3	6753	hgsc.bcm.edu	hg19	22	37602590	37602590	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSTR3	NM_001051	exon2	c.T1253G	p.L418R	CCCTACAGGTAGC	.	54.0	4.0	39.0	0.0	.	42	.	.	Atlas-SNP
SOX10	6663	hgsc.bcm.edu	hg19	22	38379616	38379616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX10	NM_006941	exon2	c.A176G	p.Q59R	CCGTCCTGCTGCT	.	83.0	4.0	57.0	0.0	.	48	.	.	Atlas-SNP
PICK1	9463	hgsc.bcm.edu	hg19	22	38470994	38470994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PICK1	NM_012407	exon13	c.C1103T	p.T368I	ACACCACATTGGC	.	116.0	46.0	107.0	0.0	.	30	.	.	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	hg19	22	40417739	40417739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM83F	NM_138435	exon4	c.A1225G	p.R409G	ATGCACAGAGACC	.	101.0	5.0	106.0	0.0	.	29	.	.	Atlas-SNP
UPK3A	7380	hgsc.bcm.edu	hg19	22	45681941	45681941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UPK3A	NM_006953	exon2	c.A172G	p.T58A	ACTGGCACCCACG	.	112.0	7.0	101.0	0.0	.	14	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50905072	50905072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SBF1	NM_002972	exon6	c.T617C	p.V206A	CGGCTGACGGGCA	.	124.0	6.0	128.0	0.0	.	211	.	.	Atlas-SNP
ARSF	416	hgsc.bcm.edu	hg19	X	2994595	2994595	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARSF	NM_004042	exon4	c.T168C	p.P56P	GACGCCTCACATC	.	66.0	5.0	48.0	0.0	.	97	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3241039	3241039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MXRA5	NM_015419	exon5	c.A2687G	p.E896G	ATCTCCTCAGTCT	.	112.0	5.0	106.0	0.0	.	815	.	.	Atlas-SNP
PIGA	5277	hgsc.bcm.edu	hg19	X	15349573	15349573	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIGA	NM_002641	exon2	c.T480C	p.A160A	GACATCAGCAAAT	.	89.0	6.0	72.0	0.0	.	34	.	.	Atlas-SNP
SCML1	6322	hgsc.bcm.edu	hg19	X	17767571	17767571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCML1	NM_001037540	exon5	c.A250G	p.R84G	ATTCGTAGAAAGG	.	128.0	6.0	120.0	0.0	.	55	.	.	Atlas-SNP
MAGEB16	139604	hgsc.bcm.edu	hg19	X	35820408	35820408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEB16	NM_001099921	exon2	c.A95G	p.K32R	TCTCCAAGGCTCT	.	87.0	4.0	87.0	0.0	.	64	.	.	Atlas-SNP
CXorf30	645090	hgsc.bcm.edu	hg19	X	36337383	36337383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CXorf30	NM_001098843	exon12	c.A742G	p.S248G	TATGAGAGTTCTG	.	129.0	8.0	100.0	0.0	.	76	.	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	hg19	X	37028804	37028804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM47C	NM_001013736	exon1	c.T2321C	p.L774P	CCCATCTCCACCC	.	49.0	4.0	38.0	0.0	.	267	.	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41075804	41075804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP9X	NM_001039591	exon35	c.A5984G	p.N1995S	AACAGAACGTACA	.	112.0	5.0	116.0	0.0	.	385	.	.	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	hg19	X	44941973	44941973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KDM6A	NM_021140	exon22	c.A3223G	p.R1075G	AGGAGGAGGAAAG	.	72.0	5.0	78.0	0.0	.	274	.	.	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	hg19	X	47041607	47041607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM10	NM_001204468	exon17	c.A2027G	p.E676G	ATGGGGAGAGGCG	.	94.0	4.0	99.0	0.0	.	117	.	.	Atlas-SNP
FTSJ1	24140	hgsc.bcm.edu	hg19	X	48341394	48341394	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FTSJ1	NM_012280	exon12	c.T978C	p.S326S	AATGAGTTGTTCA	.	60.0	4.0	60.0	0.0	.	21	.	.	Atlas-SNP
WDR13	64743	hgsc.bcm.edu	hg19	X	48458000	48458000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR13	NM_017883	exon4	c.T418C	p.S140P	CCCACGTCAGCAG	.	96.0	5.0	85.0	0.0	.	96	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48663924	48663924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDAC6	NM_006044	exon5	c.T391C	p.F131L	GTGTCCTTTCAGG	.	88.0	4.0	89.0	0.0	.	111	.	.	Atlas-SNP
AKAP4	8852	hgsc.bcm.edu	hg19	X	49963345	49963345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AKAP4	NM_003886	exon2	c.A86G	p.Y29C	GGGTTGTAGAGAT	.	118.0	7.0	79.0	0.0	.	131	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54955827	54955827	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRO	NM_001039705	exon12	c.A2670G	p.G890G	CTTTGGAGGCATA	.	119.0	5.0	145.0	0.0	.	246	.	.	Atlas-SNP
LAS1L	81887	hgsc.bcm.edu	hg19	X	64754546	64754546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LAS1L	NM_031206	exon1	c.A50G	p.D17G	ACGAGATCCATCC	.	104.0	5.0	78.0	0.0	.	72	.	.	Atlas-SNP
SLC7A3	84889	hgsc.bcm.edu	hg19	X	70146023	70146023	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC7A3	NM_032803	exon11	c.T1626C	p.P542P	CAAAGCAGGCACC	.	87.0	4.0	69.0	0.0	.	76	.	.	Atlas-SNP
MED12	9968	hgsc.bcm.edu	hg19	X	70344673	70344673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MED12	NM_005120	exon14	c.C2034A	p.D678E	TGAGGACATGGAG	.	100.0	4.0	89.0	0.0	.	984	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71873287	71873287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHKA1	NM_001172436	exon11	c.A1135G	p.R379G	TCACCCTGTCAGG	.	85.0	4.0	88.0	0.0	.	129	.	.	Atlas-SNP
HDX	139324	hgsc.bcm.edu	hg19	X	83577009	83577009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDX	NM_144657	exon10	c.A1961G	p.D654G	GGTAAATCTGACA	.	97.0	4.0	109.0	0.0	.	124	.	.	Atlas-SNP
APOOL	139322	hgsc.bcm.edu	hg19	X	84306506	84306506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APOOL	NM_198450	exon3	c.T232G	p.W78G	ATTGGCTGGTGCA	.	73.0	4.0	67.0	0.0	.	20	.	.	Atlas-SNP
CSTF2	1478	hgsc.bcm.edu	hg19	X	100078882	100078882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSTF2	NM_001325	exon5	c.T452C	p.V151A	TCTGTGTCCAGAA	.	74.0	4.0	53.0	0.0	.	47	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395773	101395773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.C531A	p.D177E	CCCGTTGTCCCCT	.	143.0	6.0	79.0	0.0	.	27	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	140.0	19.0	74.0	0.0	.	27	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395786	101395786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL6	NM_001006938	exon3	c.T518C	p.F173S	TGGGCGAATGGAT	.	165.0	7.0	89.0	0.0	.	27	.	.	Atlas-SNP
GPRASP2	114928	hgsc.bcm.edu	hg19	X	101970497	101970497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPRASP2	NM_138437	exon4	c.T700C	p.S234P	ACAGCGTCTTCTT	.	79.0	4.0	92.0	0.0	.	89	.	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	hg19	X	105153617	105153617	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NRK	NM_198465	exon13	c.T1984C	p.L662L	GGTCCGTTGCAAA	.	100.0	4.0	73.0	0.0	.	321	.	.	Atlas-SNP
TBC1D8B	54885	hgsc.bcm.edu	hg19	X	106116905	106116905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBC1D8B	NM_017752	exon21	c.A3073G	p.R1025G	TTACTCAGGATGG	.	112.0	5.0	94.0	0.0	.	181	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108691369	108691369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GUCY2F	NM_001522	exon6	c.A1498G	p.I500V	CTTTGATCAACTG	.	52.0	5.0	45.0	0.0	.	178	.	.	Atlas-SNP
DCX	1641	hgsc.bcm.edu	hg19	X	110574142	110574142	+	Missense_Mutation	SNP	G	G	T	rs371447966	alternate_allele	TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCX	NM_001195553	exon5	c.C936A	p.N312K	TTGGTCGTTACCT	.	109.0	72.0	87.0	0.0	.	158	.	.	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	hg19	X	135328496	135328496	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAP7D3	NM_024597	exon2	c.T75C	p.A25A	TGCTGCAGCAACT	.	143.0	6.0	122.0	0.0	.	102	.	.	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	hg19	X	151815555	151815555	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GABRQ	NM_018558	exon4	c.T453C	p.A151A	GGATGCTTTCGTG	.	98.0	4.0	120.0	0.0	.	131	.	.	Atlas-SNP
PNCK	139728	hgsc.bcm.edu	hg19	X	152937342	152937342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNCK	NM_001039582	exon5	c.A656G	p.D219G	TTGAGGTCCCGGT	.	134.0	8.0	132.0	0.0	.	70	.	.	Atlas-SNP
L1CAM	3897	hgsc.bcm.edu	hg19	X	153128287	153128287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L1CAM	NM_000425	exon28	c.T3605C	p.L1202P	CTGCCCAGGGGCT	.	72.0	5.0	63.0	0.0	.	189	.	.	Atlas-SNP
ATP6AP1	537	hgsc.bcm.edu	hg19	X	153664091	153664091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP6AP1	NM_001183	exon10	c.T1267C	p.S423P	TTCTTCTCCCCCG	.	104.0	5.0	98.0	0.0	.	46	.	.	Atlas-SNP
TBL1Y	90665	hgsc.bcm.edu	hg19	Y	6938816	6938816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBL1Y	NM_134258	exon9	c.T646C	p.S216P	GGGGGCTCCACCC	.	95.0	5.0	122.0	0.0	.	15	.	.	Atlas-SNP
CERS3	204219	hgsc.bcm.edu	hg19	15	101009634	101009634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_178842	exon11	c.795delC	p.F265fs	.	.	138.0	10.0	151.0	0.0	.	.	.	.	Atlas-INDEL
PEAR1	375033	hgsc.bcm.edu	hg19	1	156883056	156883056	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PEAR1	NM_001080471	exon19	c.2492delA	p.N831fs	.	.	212.0	14.0	91.0	0.0	.	118	.	.	Atlas-INDEL
MIR15A	406948	hgsc.bcm.edu	hg19	13	50623292	50623292	+	RNA	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	152.0	11.0	218.0	0.0	.	.	.	.	Atlas-INDEL
QRICH2	84074	hgsc.bcm.edu	hg19	17	74274145	74274145	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	QRICH2	NM_032134	exon15	c.4545delC	p.G1515fs	.	.	166.0	10.0	139.0	0.0	.	143	.	.	Atlas-INDEL
SLC26A4	5172	hgsc.bcm.edu	hg19	7	107340574	107340574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC26A4	NM_000441	exon15	c.1660delA	p.I554fs	.	.	197.0	12.0	136.0	0.0	.	117	.	.	Atlas-INDEL
GJA8	2703	hgsc.bcm.edu	hg19	1	147380686	147380686	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GJA8	NM_005267	exon2	c.603delG	p.E201fs	.	.	148.0	10.0	89.0	0.0	.	108	.	.	Atlas-INDEL
SUCO	51430	hgsc.bcm.edu	hg19	1	172558537	172558537	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014283	exon18	c.2295delT	p.I765fs	.	.	138.0	10.0	76.0	0.0	.	.	.	.	Atlas-INDEL
HOXA4	3201	hgsc.bcm.edu	hg19	7	27170333	27170333	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HOXA4	NM_002141	exon1	c.21delG	p.L7fs	.	.	213.0	14.0	170.0	0.0	.	21	.	.	Atlas-INDEL
MDN1	23195	hgsc.bcm.edu	hg19	6	90504517	90504517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MDN1	NM_014611	exon3	c.334delG	p.A112fs	.	.	156.0	10.0	94.0	0.0	.	478	.	.	Atlas-INDEL
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96958714	96958714	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNRNP200	NM_014014	exon16	c.2157delT	p.N719fs	.	.	175.0	13.0	160.0	0.0	.	195	.	.	Atlas-INDEL
CEP44	80817	hgsc.bcm.edu	hg19	4	175224892	175224892	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP44	NM_001040157	exon5	c.275delC	p.T92fs	.	.	178.0	11.0	182.0	0.0	.	35	.	.	Atlas-INDEL
OGT	8473	hgsc.bcm.edu	hg19	X	70781722	70781722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OGT	NM_181672	exon15	c.1948delC	p.L650fs	.	.	146.0	10.0	173.0	0.0	.	207	.	.	Atlas-INDEL
CR1	1378	hgsc.bcm.edu	hg19	1	207700165	207700165	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CR1	NM_000573	exon6	c.953delC	p.P318fs	.	.	17.0	11.0	5.0	0.0	.	354	.	.	Atlas-INDEL
MAP7D3	79649	hgsc.bcm.edu	hg19	X	135328464	135328464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAP7D3	NM_024597	exon2	c.108delG	p.K36fs	.	.	158.0	10.0	140.0	0.0	.	102	.	.	Atlas-INDEL
SDPR	8436	hgsc.bcm.edu	hg19	2	192701068	192701068	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDPR	NM_004657	exon2	c.860delG	p.S287fs	.	.	209.0	13.0	170.0	0.0	.	67	.	.	Atlas-INDEL
ELF5	2001	hgsc.bcm.edu	hg19	11	34511593	34511593	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELF5	NM_198381	exon4	c.400delA	p.N134fs	.	.	156.0	10.0	97.0	0.0	.	21	.	.	Atlas-INDEL
SLC39A8	64116	hgsc.bcm.edu	hg19	4	103226251	103226251	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC39A8	NM_022154	exon4	c.571delA	p.K191fs	.	.	129.0	10.0	276.0	0.0	.	24	.	.	Atlas-INDEL
AGBL1	123624	hgsc.bcm.edu	hg19	15	87531281	87531281	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGBL1	NM_152336	exon23	c.3146delC	p.T1049fs	.	.	138.0	11.0	180.0	0.0	.	151	.	.	Atlas-INDEL
GRB14	2888	hgsc.bcm.edu	hg19	2	165476321	165476321	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GRB14	NM_004490	exon2	c.201delG	p.K67fs	.	.	253.0	16.0	271.0	0.0	.	73	.	.	Atlas-INDEL
SIGLEC7	27036	hgsc.bcm.edu	hg19	19	51650558	51650558	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SIGLEC7	NM_014385	exon6	c.1204delA	p.R402fs	.	.	121.0	10.0	118.0	0.0	.	74	.	.	Atlas-INDEL
USP14	9097	hgsc.bcm.edu	hg19	18	210016	210016	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP14	NM_005151	exon14	c.1209delC	p.P403fs	.	.	180.0	13.0	161.0	0.0	.	41	.	.	Atlas-INDEL
JAK1	3716	hgsc.bcm.edu	hg19	1	65310468	65310468	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JAK1	NM_002227	exon16	c.2221delG	p.G741fs	.	.	187.0	13.0	116.0	0.0	.	209	.	.	Atlas-INDEL
GPR115	221393	hgsc.bcm.edu	hg19	6	47680293	47680293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR115	NM_153838	exon5	c.500delT	p.L167X	.	.	176.0	13.0	133.0	0.0	.	140	.	.	Atlas-INDEL
IL20RA	53832	hgsc.bcm.edu	hg19	6	137322699	137322699	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL20RA	NM_014432	exon7	c.1659delC	p.N553fs	.	.	225.0	14.0	194.0	0.0	.	54	.	.	Atlas-INDEL
RAG1	5896	hgsc.bcm.edu	hg19	11	36594873	36594873	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAG1	NM_000448	exon2	c.18delA	p.P6fs	.	.	183.0	11.0	133.0	0.0	.	151	.	.	Atlas-INDEL
SELENBP1	8991	hgsc.bcm.edu	hg19	1	151339214	151339214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SELENBP1	NM_001258289	exon6	c.775delG	p.A259fs	.	.	163.0	10.0	88.0	0.0	.	44	.	.	Atlas-INDEL
DIAPH2	1730	hgsc.bcm.edu	hg19	X	96396689	96396689	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DIAPH2	NM_007309	exon22	c.2614delC	p.Q872fs	.	.	148.0	11.0	158.0	0.0	.	148	.	.	Atlas-INDEL
POTEC	388468	hgsc.bcm.edu	hg19	18	14542924	14542924	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POTEC	NM_001137671	exon1	c.223delA	p.S75fs	.	.	461.0	29.0	422.0	0.0	.	129	.	.	Atlas-INDEL
CDCA4	55038	hgsc.bcm.edu	hg19	14	105477749	105477749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDCA4	NM_017955	exon2	c.519delC	p.N173fs	.	.	174.0	12.0	133.0	0.0	.	18	.	.	Atlas-INDEL
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37505286	37505286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD30A	NM_052997	exon32	c.2878delC	p.Q960fs	.	.	339.0	22.0	325.0	0.0	.	448	.	.	Atlas-INDEL
CAAP1	79886	hgsc.bcm.edu	hg19	9	26886160	26886160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_024828	exon3	c.532delC	p.L178fs	.	.	197.0	12.0	194.0	0.0	.	.	.	.	Atlas-INDEL
VEZT	55591	hgsc.bcm.edu	hg19	12	95694123	95694123	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VEZT	NM_017599	exon12	c.2013delT	p.G671fs	.	.	193.0	12.0	93.0	0.0	.	106	.	.	Atlas-INDEL
WDFY3	23001	hgsc.bcm.edu	hg19	4	85614081	85614081	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDFY3	NM_014991	exon59	c.9007delC	p.H3003fs	.	.	164.0	10.0	103.0	0.0	.	314	.	.	Atlas-INDEL
NUP155	9631	hgsc.bcm.edu	hg19	5	37309279	37309279	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP155	NM_153485	exon24	c.2720delT	p.I907fs	.	.	198.0	12.0	175.0	0.0	.	116	.	.	Atlas-INDEL
POLR2B	5431	hgsc.bcm.edu	hg19	4	57877166	57877166	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR2B	NM_000938	exon13	c.1699delA	p.I567fs	.	.	145.0	11.0	161.0	0.0	.	108	.	.	Atlas-INDEL
CLSPN	63967	hgsc.bcm.edu	hg19	1	36228077	36228077	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLSPN	NM_001190481	exon5	c.751delG	p.E251fs	.	.	141.0	11.0	100.0	0.0	.	248	.	.	Atlas-INDEL
CDHR5	53841	hgsc.bcm.edu	hg19	11	618994	618994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDHR5	NM_021924	exon13	c.1566delG	p.P522fs	.	.	166.0	11.0	91.0	0.0	.	77	.	.	Atlas-INDEL
SCN9A	6335	hgsc.bcm.edu	hg19	2	167141203	167141203	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SCN9A_ENST00000375387,right_upper_lobe,carcinoma,+1,1	SCN9A	NM_002977	exon12	c.1735delG	p.G579fs	.	.	152.0	11.0	146.0	0.0	.	296	.	.	Atlas-INDEL
UBE2J1	51465	hgsc.bcm.edu	hg19	6	90048232	90048232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UBE2J1	NM_016021	exon4	c.269delT	p.I90fs	.	.	195.0	13.0	145.0	0.0	.	28	.	.	Atlas-INDEL
NFYC	4802	hgsc.bcm.edu	hg19	1	41204559	41204559	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NFYC	NM_001142587	exon2	c.43delG	p.A15fs	.	.	194.0	12.0	96.0	0.0	.	39	.	.	Atlas-INDEL
COL5A3	50509	hgsc.bcm.edu	hg19	19	10087955	10087955	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL5A3	NM_015719	exon44	c.3239delA	p.D1080fs	.	.	129.0	10.0	115.0	0.0	.	243	.	.	Atlas-INDEL
PKN2	5586	hgsc.bcm.edu	hg19	1	89270151	89270151	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PKN2	NM_006256	exon9	c.1358delA	p.D453fs	.	.	223.0	14.0	176.0	0.0	.	109	.	.	Atlas-INDEL
ACAN	176	hgsc.bcm.edu	hg19	15	89386594	89386594	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACAN	NM_001135	exon6	c.765delC	p.V255fs	.	.	182.0	12.0	151.0	0.0	.	220	.	.	Atlas-INDEL
BCL7A	605	hgsc.bcm.edu	hg19	12	122473237	122473237	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	BCL7A,mouth,carcinoma,0,1	BCL7A	NM_020993	exon3	c.175-1A>-	.	.	.	216.0	13.0	187.0	0.0	.	31	.	.	Atlas-INDEL
PNISR	25957	hgsc.bcm.edu	hg19	6	99848584	99848584	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	PNISR	NM_015491	exon11	c.2251delC	p.H751fs	.	.	241.0	16.0	146.0	0.0	.	74	.	.	Atlas-INDEL
COG2	22796	hgsc.bcm.edu	hg19	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COG2	NM_007357	exon5	c.430delG	p.E144fs	.	.	183.0	13.0	114.0	0.0	.	61	.	.	Atlas-INDEL
OR8K1	390157	hgsc.bcm.edu	hg19	11	56114060	56114060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR8K1	NM_001002907	exon1	c.545delA	p.Y182fs	.	.	192.0	13.0	126.0	0.0	.	93	.	.	Atlas-INDEL
LRRC32	2615	hgsc.bcm.edu	hg19	11	76370772	76370772	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC32	NM_001128922	exon3	c.1866delA	p.G622fs	.	.	137.0	12.0	93.0	0.0	.	74	.	.	Atlas-INDEL
NHLRC2	374354	hgsc.bcm.edu	hg19	10	115657964	115657964	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	NHLRC2,colon,carcinoma,0,1	NHLRC2	NM_198514	exon6	c.1134delG	p.K378fs	.	.	265.0	16.0	222.0	0.0	.	56	.	.	Atlas-INDEL
ABCA5	23461	hgsc.bcm.edu	hg19	17	67255885	67255885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA5	NM_018672	exon27	c.3694delT	p.Y1232fs	.	.	265.0	18.0	137.0	0.0	.	162	.	.	Atlas-INDEL
CTGF	1490	hgsc.bcm.edu	hg19	6	132270568	132270568	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTGF	NM_001901	exon5	c.887delA	p.H296fs	.	.	179.0	14.0	102.0	0.0	.	36	.	.	Atlas-INDEL
TCERG1L	256536	hgsc.bcm.edu	hg19	10	132891517	132891517	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCERG1L	NM_174937	exon12	c.1670delG	p.R557fs	.	.	134.0	10.0	126.0	0.0	.	91	.	.	Atlas-INDEL
LRFN4	78999	hgsc.bcm.edu	hg19	11	66627324	66627324	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRFN4	NM_024036	exon2	c.1565delT	p.V522fs	.	.	149.0	10.0	76.0	0.0	.	25	.	.	Atlas-INDEL
ABHD12B	145447	hgsc.bcm.edu	hg19	14	51368597	51368597	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABHD12B	NM_001206673	exon10	c.830delG	p.R277fs	.	.	113.0	11.0	85.0	0.0	.	53	.	.	Atlas-INDEL
PCDH15	65217	hgsc.bcm.edu	hg19	10	55582820	55582820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCDH15	NM_001142763	exon35	c.4688delT	p.I1563fs	.	.	180.0	11.0	164.0	0.0	.	1715	.	.	Atlas-INDEL
TMEM237	65062	hgsc.bcm.edu	hg19	2	202503720	202503720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM237	NM_001044385	exon3	c.129delC	p.N43fs	.	.	220.0	16.0	224.0	0.0	.	21	.	.	Atlas-INDEL
LRRC58	116064	hgsc.bcm.edu	hg19	3	120054700	120054700	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC58	NM_001099678	exon2	c.602delT	p.I201fs	.	.	156.0	12.0	127.0	0.0	.	18	.	.	Atlas-INDEL
LDLRAD1	388633	hgsc.bcm.edu	hg19	1	54476004	54476004	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LDLRAD1	NM_001010978	exon5	c.421delT	p.C141fs	.	.	164.0	11.0	90.0	0.0	.	22	.	.	Atlas-INDEL
ABCA8	10351	hgsc.bcm.edu	hg19	17	66918423	66918423	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA8	NM_007168	exon11	c.1462delG	p.E488fs	.	.	197.0	14.0	92.0	0.0	.	213	.	.	Atlas-INDEL
TTC39C	125488	hgsc.bcm.edu	hg19	18	21662914	21662914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC39C	NM_001135993	exon6	c.852delG	p.P284fs	.	.	162.0	10.0	127.0	0.0	.	83	.	.	Atlas-INDEL
SEC14L1	6397	hgsc.bcm.edu	hg19	17	75189591	75189591	+	Frame_Shift_Del	DEL	A	A	-	rs34381783		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC14L1	NM_001204408	exon8	c.433delG	p.E145fs	.	.	174.0	12.0	110.0	0.0	.	81	.	.	Atlas-INDEL
THOC3	84321	hgsc.bcm.edu	hg19	5	175394993	175394993	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THOC3	NM_032361	exon1	c.220delT	p.S74fs	.	.	169.0	13.0	83.0	0.0	.	11	.	.	Atlas-INDEL
DNMT3B	1789	hgsc.bcm.edu	hg19	20	31369189	31369189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNMT3B	NM_175850	exon3	c.208delA	p.R70fs	.	.	144.0	10.0	127.0	0.0	.	196	.	.	Atlas-INDEL
SRCAP	10847	hgsc.bcm.edu	hg19	16	30735727	30735727	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SRCAP,NS,carcinoma,0,2	SRCAP	NM_006662	exon25	c.4981delC	p.Q1661fs	.	.	163.0	10.0	116.0	0.0	.	298	.	.	Atlas-INDEL
TENM4	26011	hgsc.bcm.edu	hg19	11	78614323	78614323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001098816	exon7	c.740delT	p.L247fs	.	.	165.0	10.0	94.0	0.0	.	.	.	.	Atlas-INDEL
TCEAL4	79921	hgsc.bcm.edu	hg19	X	102841728	102841728	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEAL4	NM_001006935	exon3	c.124delG	p.E42fs	.	.	142.0	10.0	115.0	0.0	.	18	.	.	Atlas-INDEL
RYR2	6262	hgsc.bcm.edu	hg19	1	237604620	237604620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RYR2	NM_001035	exon13	c.1006delG	p.E336fs	.	.	152.0	10.0	100.0	0.0	.	1273	.	.	Atlas-INDEL
GRID2	2895	hgsc.bcm.edu	hg19	4	94690497	94690497	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GRID2	NM_001510	exon15	c.2496delA	p.A832fs	.	.	143.0	10.0	182.0	0.0	.	233	.	.	Atlas-INDEL
GNAI1	2770	hgsc.bcm.edu	hg19	7	79842146	79842146	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GNAI1	NM_002069	exon7	c.834delC	p.I278fs	.	.	246.0	15.0	183.0	0.0	.	44	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179554548	179554548	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon122	c.31839delA	p.P10613fs	.	.	131.0	11.0	101.0	0.0	.	18412	.	.	Atlas-INDEL
TAOK1	57551	hgsc.bcm.edu	hg19	17	27805327	27805327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAOK1	NM_025142	exon6	c.410delA	p.Q137fs	.	.	234.0	15.0	213.0	0.0	.	151	.	.	Atlas-INDEL
PPP4R1	9989	hgsc.bcm.edu	hg19	18	9557277	9557277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPP4R1	NM_001042388	exon15	c.2133delA	p.L711fs	.	.	149.0	11.0	166.0	0.0	.	63	.	.	Atlas-INDEL
TCERG1	10915	hgsc.bcm.edu	hg19	5	145890008	145890008	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCERG1	NM_006706	exon22	c.3099delC	p.S1033fs	.	.	119.0	10.0	69.0	0.0	.	148	.	.	Atlas-INDEL
CPSF1	29894	hgsc.bcm.edu	hg19	8	145619169	145619169	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPSF1	NM_013291	exon35	c.3945delG	p.P1315fs	.	.	274.0	17.0	87.0	0.0	.	92	.	.	Atlas-INDEL
EXO1	9156	hgsc.bcm.edu	hg19	1	242042452	242042452	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EXO1	NM_130398	exon13	c.1915delT	p.S639fs	.	.	226.0	17.0	136.0	0.0	.	103	.	.	Atlas-INDEL
MEAF6	64769	hgsc.bcm.edu	hg19	1	37961495	37961495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MEAF6	NM_022756	exon7	c.589delC	p.P197fs	.	.	200.0	12.0	132.0	0.0	.	25	.	.	Atlas-INDEL
USP14	9097	hgsc.bcm.edu	hg19	18	198083	198083	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP14	NM_005151	exon9	c.711delT	p.S237fs	.	.	172.0	12.0	117.0	0.0	.	41	.	.	Atlas-INDEL
OXCT1	5019	hgsc.bcm.edu	hg19	5	41862804	41862804	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OXCT1	NM_000436	exon2	c.128delA	p.Y43fs	.	.	211.0	15.0	161.0	0.0	.	54	.	.	Atlas-INDEL
ANGEL2	90806	hgsc.bcm.edu	hg19	1	213181561	213181561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANGEL2	NM_144567	exon3	c.634delG	p.D212fs	.	.	219.0	14.0	126.0	0.0	.	45	.	.	Atlas-INDEL
MRPL3	11222	hgsc.bcm.edu	hg19	3	131188575	131188575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	MRPL3	NM_007208	exon8	c.782delT	p.M261fs	.	.	153.0	10.0	119.0	0.0	.	32	.	.	Atlas-INDEL
RASGRP1	10125	hgsc.bcm.edu	hg19	15	38810590	38810590	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RASGRP1	NM_001128602	exon5	c.425delT	p.M142fs	.	.	135.0	10.0	105.0	0.0	.	50	.	.	Atlas-INDEL
FAM208A	23272	hgsc.bcm.edu	hg19	3	56694990	56694990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM208A	NM_001112736	exon10	c.1217delT	p.I406fs	.	.	230.0	16.0	131.0	0.0	.	113	.	.	Atlas-INDEL
LARP7	51574	hgsc.bcm.edu	hg19	4	113567545	113567545	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	LARP7	NM_001267039	exon5	c.261delG	p.M87fs	.	.	179.0	11.0	259.0	0.0	.	54	.	.	Atlas-INDEL
PLAG1	5324	hgsc.bcm.edu	hg19	8	57078932	57078932	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLAG1	NM_002655	exon5	c.1374delA	p.P458fs	.	.	229.0	15.0	88.0	0.0	.	123	.	.	Atlas-INDEL
ANKRD17	26057	hgsc.bcm.edu	hg19	4	73957752	73957752	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD17	NM_032217	exon29	c.5594delC	p.T1865fs	.	.	197.0	14.0	189.0	0.0	.	214	.	.	Atlas-INDEL
SPATA2L	124044	hgsc.bcm.edu	hg19	16	89764134	89764134	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPATA2L	NM_152339	exon3	c.884delC	p.A295fs	.	.	138.0	10.0	92.0	0.0	.	16	.	.	Atlas-INDEL
STYX	6815	hgsc.bcm.edu	hg19	14	53213189	53213189	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STYX	NM_001130701	exon4	c.135delG	p.M45fs	.	.	203.0	14.0	180.0	0.0	.	14	.	.	Atlas-INDEL
SRA1	10011	hgsc.bcm.edu	hg19	5	139936736	139936736	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRA1	NM_001253764	exon1	c.303delA	p.P101fs	.	.	189.0	15.0	103.0	0.0	.	24	.	.	Atlas-INDEL
BEND3	57673	hgsc.bcm.edu	hg19	6	107389947	107389947	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BEND3	NM_001080450	exon5	c.2449delT	p.C817fs	.	.	231.0	14.0	119.0	0.0	.	70	.	.	Atlas-Indel,Pindel
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128994381	128994381	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS19	NM_133638	exon15	c.2357delG	p.G786fs	.	.	164.0	10.0	78.0	0.0	.	216	.	.	Atlas-INDEL
ZNF343	79175	hgsc.bcm.edu	hg19	20	2474194	2474194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF343	NM_024325	exon4	c.149delA	p.Q50fs	.	.	159.0	10.0	146.0	0.0	.	47	.	.	Atlas-INDEL
DLD	1738	hgsc.bcm.edu	hg19	7	107555996	107555996	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLD	NM_000108	exon9	c.729delA	p.E243fs	.	.	155.0	13.0	112.0	0.0	.	72	.	.	Atlas-INDEL
ALCAM	214	hgsc.bcm.edu	hg19	3	105243184	105243184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ALCAM	NM_001627	exon3	c.225delG	p.K75fs	.	.	159.0	10.0	97.0	0.0	.	71	.	.	Atlas-INDEL
KNTC1	9735	hgsc.bcm.edu	hg19	12	123014679	123014679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KNTC1	NM_014708	exon2	c.68delG	p.R23fs	.	.	154.0	10.0	103.0	0.0	.	182	.	.	Atlas-INDEL
SMC1A	8243	hgsc.bcm.edu	hg19	X	53407993	53407993	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMC1A	NM_006306	exon23	c.3454delT	p.F1152fs	.	.	125.0	10.0	125.0	0.0	.	112	.	.	Atlas-INDEL
DLGAP5	9787	hgsc.bcm.edu	hg19	14	55625371	55625371	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLGAP5	NM_014750	exon14	c.1743delT	p.N581fs	.	.	205.0	13.0	180.0	0.0	.	84	.	.	Atlas-INDEL
GZMA	3001	hgsc.bcm.edu	hg19	5	54403626	54403626	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GZMA	NM_006144	exon3	c.219delC	p.N73fs	.	.	163.0	10.0	85.0	0.0	.	60	.	.	Atlas-INDEL
ZNF701	55762	hgsc.bcm.edu	hg19	19	53085947	53085947	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF701	NM_001172655	exon5	c.832delG	p.E278fs	.	.	125.0	10.0	91.0	0.0	.	44	.	.	Atlas-INDEL
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73280611	73280611	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAMTS3	NM_014243	exon4	c.583delG	p.G195fs	.	.	156.0	10.0	124.0	0.0	.	164	.	.	Atlas-INDEL
PIEZO2	63895	hgsc.bcm.edu	hg19	18	10671532	10671532	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_022068	exon52	c.8252delC	p.T2751fs	.	.	184.0	12.0	163.0	0.0	.	.	.	.	Atlas-INDEL
IGSF9	57549	hgsc.bcm.edu	hg19	1	159900106	159900106	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGSF9	NM_001135050	exon15	c.1938delA	p.P646fs	.	.	154.0	10.0	62.0	0.0	.	123	.	.	Atlas-INDEL
ITGAD	3681	hgsc.bcm.edu	hg19	16	31413551	31413551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGAD	NM_005353	exon6	c.542delA	p.E181fs	.	.	144.0	10.0	143.0	0.0	.	154	.	.	Atlas-INDEL
SIMC1	375484	hgsc.bcm.edu	hg19	5	175740835	175740835	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_198567	exon4	c.573delG	p.Q191fs	.	.	171.0	11.0	113.0	0.0	.	.	.	.	Atlas-INDEL
METTL17	64745	hgsc.bcm.edu	hg19	14	21462740	21462740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	METTL17,NS,carcinoma,0,1	METTL17	NM_022734	exon8	c.735delC	p.V245fs	.	.	172.0	11.0	162.0	0.0	.	46	.	.	Atlas-INDEL
PSMB2	5690	hgsc.bcm.edu	hg19	1	36101937	36101937	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSMB2	NM_002794	exon2	c.189delC	p.N63fs	.	.	344.0	26.0	170.0	0.0	.	9	.	.	Atlas-INDEL
ACPP	55	hgsc.bcm.edu	hg19	3	132075605	132075605	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ACPP_ENST00000351273,NS,carcinoma,0,2	ACPP	NM_001099	exon10	c.1043delG	p.S348fs	.	.	165.0	10.0	115.0	0.0	.	118	.	.	Atlas-INDEL
DHX35	60625	hgsc.bcm.edu	hg19	20	37650554	37650554	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX35	NM_021931	exon16	c.1568delT	p.V523fs	.	.	179.0	12.0	187.0	0.0	.	82	.	.	Atlas-INDEL
ZNF532	55205	hgsc.bcm.edu	hg19	18	56651255	56651255	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF532	NM_018181	exon11	c.3462delT	p.P1154fs	.	.	253.0	16.0	223.0	0.0	.	108	.	.	Atlas-INDEL
LCE2D	353141	hgsc.bcm.edu	hg19	1	152636615	152636615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LCE2D	NM_178430	exon2	c.33delG	p.Q11fs	.	.	146.0	10.0	113.0	0.0	.	26	.	.	Atlas-INDEL
MNDA	4332	hgsc.bcm.edu	hg19	1	158813107	158813107	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MNDA	NM_002432	exon3	c.303delG	p.V101fs	.	.	116.0	12.0	75.0	0.0	.	147	.	.	Atlas-INDEL
NAALAD2	10003	hgsc.bcm.edu	hg19	11	89883695	89883695	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NAALAD2	NM_005467	exon5	c.528delC	p.F176fs	.	.	166.0	11.0	136.0	0.0	.	113	.	.	Atlas-INDEL
SGSM2	9905	hgsc.bcm.edu	hg19	17	2282488	2282488	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SGSM2	NM_014853	exon23	c.3057delG	p.K1019fs	.	.	200.0	12.0	244.0	0.0	.	60	.	.	Atlas-INDEL
DDX60	55601	hgsc.bcm.edu	hg19	4	169223484	169223484	+	Frame_Shift_Del	DEL	A	A	-	rs34458540		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60	NM_017631	exon6	c.691delG	p.G231fs	.	.	152.0	12.0	158.0	0.0	.	304	.	.	Atlas-INDEL
HSPG2	3339	hgsc.bcm.edu	hg19	1	22217107	22217107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	HSPG2,leg,malignant_melanoma,0,1	HSPG2	NM_005529	exon4	c.326delG	p.R109fs	.	.	174.0	11.0	105.0	0.0	.	311	.	.	Atlas-INDEL
KRT16	3868	hgsc.bcm.edu	hg19	17	39766478	39766478	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRT16	NM_005557	exon7	c.1292delA	p.Q431fs	.	.	173.0	11.0	187.0	0.0	.	45	.	.	Atlas-INDEL
PCIF1	63935	hgsc.bcm.edu	hg19	20	44569759	44569759	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCIF1	NM_022104	exon7	c.585delG	p.L195fs	.	.	166.0	10.0	130.0	0.0	.	51	.	.	Atlas-INDEL
SCN4A	6329	hgsc.bcm.edu	hg19	17	62021202	62021202	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCN4A	NM_000334	exon22	c.3922delA	p.K1308fs	.	.	251.0	17.0	176.0	0.0	.	205	.	.	Atlas-INDEL
PRKRIR	5612	hgsc.bcm.edu	hg19	11	76066662	76066662	+	Splice_Site	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRKRIR	NM_004705	exon5	c.355+1A>-	.	.	.	120.0	12.0	82.0	0.0	.	65	.	.	Atlas-INDEL
SRSF4	6429	hgsc.bcm.edu	hg19	1	29475675	29475675	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SRSF4	NM_005626	exon6	c.733delG	p.E245fs	.	.	166.0	10.0	106.0	0.0	.	44	.	.	Atlas-INDEL
N4BP1	9683	hgsc.bcm.edu	hg19	16	48596281	48596281	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	N4BP1	NM_153029	exon2	c.274delG	p.V92fs	.	.	142.0	10.0	126.0	0.0	.	121	.	.	Atlas-INDEL
PLCB4	5332	hgsc.bcm.edu	hg19	20	9352974	9352974	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCB4	NM_182797	exon9	c.609delA	p.A203fs	.	.	215.0	13.0	239.0	0.0	.	204	.	.	Atlas-INDEL
WDFY4	57705	hgsc.bcm.edu	hg19	10	50015979	50015979	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDFY4	NM_020945	exon28	c.4813delT	p.S1605fs	.	.	151.0	10.0	128.0	0.0	.	205	.	.	Atlas-INDEL
DOCK10	55619	hgsc.bcm.edu	hg19	2	225695297	225695297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK10	NM_014689	exon27	c.2998delT	p.S1000fs	.	.	163.0	11.0	182.0	0.0	.	308	.	.	Atlas-INDEL
PLCG1	5335	hgsc.bcm.edu	hg19	20	39798114	39798114	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLCG1	NM_182811	exon23	c.2597delG	p.S866fs	.	.	174.0	11.0	176.0	0.0	.	111	.	.	Atlas-INDEL
IL31RA	133396	hgsc.bcm.edu	hg19	5	55168109	55168109	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL31RA	NM_001242637	exon4	c.283delG	p.E95fs	.	.	164.0	11.0	106.0	0.0	.	84	.	.	Atlas-INDEL
SLC6A14	11254	hgsc.bcm.edu	hg19	X	115573885	115573885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC6A14	NM_007231	exon4	c.376delA	p.I126fs	.	.	121.0	10.0	104.0	0.0	.	56	.	.	Atlas-INDEL
ZNF334	55713	hgsc.bcm.edu	hg19	20	45131438	45131438	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF334	NM_018102	exon5	c.541delT	p.Y181fs	.	.	197.0	12.0	185.0	0.0	.	101	.	.	Atlas-INDEL
SPON2	10417	hgsc.bcm.edu	hg19	4	1165676	1165676	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPON2	NM_012445	exon2	c.185delT	p.L62fs	.	.	159.0	10.0	95.0	0.0	.	22	.	.	Atlas-INDEL
ZNF292	23036	hgsc.bcm.edu	hg19	6	87970974	87970974	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF292	NM_015021	exon8	c.7626delT	p.N2542fs	.	.	100.0	11.0	76.0	0.0	.	479	.	.	Atlas-INDEL
MAML1	9794	hgsc.bcm.edu	hg19	5	179193024	179193024	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAML1	NM_014757	exon2	c.1012delT	p.S338fs	.	.	144.0	10.0	69.0	0.0	.	118	.	.	Atlas-INDEL
NASP	4678	hgsc.bcm.edu	hg19	1	46073055	46073055	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NASP	NM_002482	exon6	c.471delC	p.A157fs	.	.	238.0	17.0	138.0	0.0	.	77	.	.	Atlas-INDEL
COL5A1	1289	hgsc.bcm.edu	hg19	9	137593113	137593113	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL5A1	NM_000093	exon4	c.587delA	p.H196fs	.	.	192.0	13.0	178.0	0.0	.	323	.	.	Atlas-INDEL
PPA1	5464	hgsc.bcm.edu	hg19	10	71977640	71977640	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPA1	NM_021129	exon4	c.226delG	p.G76fs	.	.	148.0	11.0	137.0	0.0	.	24	.	.	Atlas-INDEL
CCDC109B	55013	hgsc.bcm.edu	hg19	4	110605773	110605773	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC109B	NM_017918	exon6	c.786delC	p.V262fs	.	.	107.0	10.0	156.0	0.0	.	47	.	.	Atlas-INDEL
TARS2	80222	hgsc.bcm.edu	hg19	1	150469064	150469064	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TARS2	NM_025150	exon8	c.880delA	p.R294fs	.	.	216.0	14.0	121.0	0.0	.	91	.	.	Atlas-INDEL
TPP2	7174	hgsc.bcm.edu	hg19	13	103326668	103326668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPP2	NM_003291	exon27	c.3367delG	p.A1123fs	.	.	162.0	10.0	91.0	0.0	.	124	.	.	Atlas-INDEL
MSI1	4440	hgsc.bcm.edu	hg19	12	120784098	120784098	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MSI1	NM_002442	exon13	c.888delT	p.P296fs	.	.	151.0	11.0	64.0	0.0	.	40	.	.	Atlas-INDEL
TCP11	6954	hgsc.bcm.edu	hg19	6	35096919	35096919	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCP11	NM_001093728	exon4	c.317delG	p.W106fs	.	.	181.0	12.0	135.0	0.0	.	94	.	.	Atlas-INDEL
SLC43A3	29015	hgsc.bcm.edu	hg19	11	57193097	57193097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC43A3	NM_014096	exon4	c.232delT	p.S78fs	.	.	155.0	13.0	134.0	0.0	.	54	.	.	Atlas-INDEL
TRANK1	9881	hgsc.bcm.edu	hg19	3	36897154	36897154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRANK1	NM_014831	exon12	c.3928delC	p.L1310X	.	.	170.0	12.0	118.0	0.0	.	398	.	.	Atlas-INDEL
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10822385	10822385	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4G2	NM_001172705	exon17	c.1540-2T>-	.	.	.	157.0	10.0	83.0	0.0	.	89	.	.	Atlas-INDEL
ADNP	23394	hgsc.bcm.edu	hg19	20	49508560	49508560	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADNP	NM_015339	exon5	c.2692delG	p.E898fs	.	.	144.0	10.0	109.0	0.0	.	106	.	.	Atlas-INDEL
KIAA1609	57707	hgsc.bcm.edu	hg19	16	84520325	84520325	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1609	NM_020947	exon5	c.871delC	p.P291fs	.	.	156.0	10.0	151.0	0.0	.	39	.	.	Atlas-INDEL
IKBIP	121457	hgsc.bcm.edu	hg19	12	99020228	99020228	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IKBIP	NM_153687	exon3	c.615delG	p.L205fs	.	.	165.0	10.0	97.0	0.0	.	46	.	.	Atlas-INDEL
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77775609	77775609	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFHX4	NM_024721	exon11	c.9658delG	p.E3220fs	.	.	246.0	15.0	67.0	0.0	.	878	.	.	Atlas-INDEL
CDCA3	83461	hgsc.bcm.edu	hg19	12	6958537	6958537	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDCA3	NM_031299	exon5	c.602delT	p.L201fs	.	.	200.0	13.0	247.0	0.0	.	17	.	.	Atlas-INDEL
HELLS	3070	hgsc.bcm.edu	hg19	10	96336531	96336531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HELLS	NM_018063	exon10	c.1000delG	p.E334fs	.	.	184.0	12.0	157.0	0.0	.	63	.	.	Atlas-INDEL
GLO1	2739	hgsc.bcm.edu	hg19	6	38654690	38654690	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GLO1	NM_006708	exon2	c.146delA	p.Y49fs	.	.	333.0	20.0	218.0	0.0	.	12	.	.	Atlas-INDEL
WAC	51322	hgsc.bcm.edu	hg19	10	28908473	28908473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WAC	NM_016628	exon14	c.1881delA	p.L627fs	.	.	163.0	10.0	133.0	0.0	.	77	.	.	Atlas-INDEL
SLITRK5	26050	hgsc.bcm.edu	hg19	13	88328344	88328344	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLITRK5	NM_015567	exon2	c.700delG	p.E234fs	.	.	189.0	12.0	98.0	0.0	.	192	.	.	Atlas-INDEL
CXorf30	645090	hgsc.bcm.edu	hg19	X	36379541	36379541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CXorf30	NM_001098843	exon16	c.1285delG	p.E429fs	.	.	162.0	10.0	134.0	0.0	.	76	.	.	Atlas-INDEL
GUSB	2990	hgsc.bcm.edu	hg19	7	65429409	65429409	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GUSB	NM_000181	exon11	c.1691delG	p.S564fs	.	.	155.0	11.0	122.0	0.0	.	52	.	.	Atlas-INDEL
FANCI	55215	hgsc.bcm.edu	hg19	15	89828374	89828374	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCI	NM_001113378	exon18	c.1745delC	p.T582fs	.	.	161.0	10.0	135.0	0.0	.	129	.	.	Atlas-INDEL
TSTD2	158427	hgsc.bcm.edu	hg19	9	100389705	100389705	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSTD2	NM_139246	exon2	c.141delG	p.K47fs	.	.	188.0	13.0	163.0	0.0	.	42	.	.	Atlas-INDEL
NPS	594857	hgsc.bcm.edu	hg19	10	129350732	129350732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPS	NM_001030013	exon3	c.98delG	p.G33fs	.	.	118.0	10.0	128.0	0.0	.	14	.	.	Atlas-INDEL
PARG	8505	hgsc.bcm.edu	hg19	10	51363013	51363013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PARG	NM_003631	exon3	c.1060delA	p.R354fs	.	.	11.0	10.0	5.0	0.0	.	46	.	.	Atlas-INDEL
PRDM2	7799	hgsc.bcm.edu	hg19	1	14108857	14108857	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRDM2	NM_015866	exon8	c.4566delT	p.I1522fs	.	.	125.0	10.0	85.0	0.0	.	147	.	.	Atlas-INDEL
MTRF1L	54516	hgsc.bcm.edu	hg19	6	153323592	153323592	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTRF1L	NM_019041	exon1	c.230delA	p.E77fs	.	.	227.0	14.0	190.0	0.0	.	21	.	.	Atlas-INDEL
CYP39A1	51302	hgsc.bcm.edu	hg19	6	46604172	46604172	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYP39A1	NM_016593	exon5	c.687delC	p.N229fs	.	.	144.0	11.0	94.0	0.0	.	41	.	.	Atlas-INDEL
PYROXD1	79912	hgsc.bcm.edu	hg19	12	21620538	21620538	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PYROXD1	NM_024854	exon11	c.1239delA	p.K413fs	.	.	209.0	13.0	243.0	0.0	.	38	.	.	Atlas-INDEL
SCIN	85477	hgsc.bcm.edu	hg19	7	12664770	12664770	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SCIN	NM_001112706	exon6	c.892+2A>-	.	.	.	146.0	10.0	115.0	0.0	.	105	.	.	Atlas-INDEL
MYCL1	4610	hgsc.bcm.edu	hg19	1	40366859	40366859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYCL1	NM_005376	exon2	c.339delC	p.G113fs	.	.	302.0	19.0	176.0	0.0	.	36	.	.	Atlas-INDEL
IRAK4	51135	hgsc.bcm.edu	hg19	12	44180517	44180517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IRAK4	NM_016123	exon12	c.1381delT	p.X461K	.	.	145.0	10.0	127.0	0.0	.	77	.	.	Atlas-INDEL
EIF4B	1975	hgsc.bcm.edu	hg19	12	53427592	53427592	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4B	NM_001417	exon9	c.981delT	p.G327fs	.	.	389.0	26.0	328.0	0.0	.	38	.	.	Atlas-INDEL
MYO7A	4647	hgsc.bcm.edu	hg19	11	76917218	76917218	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO7A	NM_000260	exon41	c.5712delC	p.H1904fs	.	.	127.0	10.0	88.0	0.0	.	164	.	.	Atlas-INDEL
BAIAP2	10458	hgsc.bcm.edu	hg19	17	79089623	79089623	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAIAP2	NM_001144888	exon14	c.1588delG	p.A530fs	.	.	131.0	11.0	83.0	0.0	.	74	.	.	Atlas-INDEL
FLNB	2317	hgsc.bcm.edu	hg19	3	58107010	58107010	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FLNB	NM_001457	exon20	c.2905delA	p.R969fs	.	.	166.0	10.0	134.0	0.0	.	430	.	.	Atlas-INDEL
KDM4C	23081	hgsc.bcm.edu	hg19	9	6805725	6805725	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KDM4C	NM_001146696	exon3	c.336delG	p.Q112fs	.	.	199.0	12.0	193.0	0.0	.	186	.	.	Atlas-INDEL
PRKD1	5587	hgsc.bcm.edu	hg19	14	30095706	30095706	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRKD1	NM_002742	exon12	c.1783delG	p.G595fs	.	.	193.0	12.0	193.0	0.0	.	316	.	.	Atlas-INDEL
JAG2	3714	hgsc.bcm.edu	hg19	14	105618518	105618518	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JAG2	NM_145159	exon6	c.900delC	p.G300fs	.	.	220.0	14.0	196.0	0.0	.	69	.	.	Atlas-INDEL
TBX18	9096	hgsc.bcm.edu	hg19	6	85446613	85446613	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBX18	NM_001080508	exon8	c.1615delA	p.K539fs	.	.	191.0	12.0	127.0	0.0	.	131	.	.	Atlas-INDEL
FHAD1	114827	hgsc.bcm.edu	hg19	1	15692403	15692403	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FHAD1	NM_052929	exon23	c.3061delG	p.A1021fs	.	.	216.0	13.0	89.0	0.0	.	78	.	.	Atlas-INDEL
HSPA1B	3304	hgsc.bcm.edu	hg19	6	31796253	31796253	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPA1B	NM_005346	exon1	c.525delG	p.E175fs	.	.	153.0	10.0	117.0	0.0	.	5	.	.	Atlas-INDEL
CASC4	113201	hgsc.bcm.edu	hg19	15	44673029	44673029	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CASC4	NM_138423	exon8	c.926delA	p.N309fs	.	.	156.0	13.0	130.0	0.0	.	34	.	.	Atlas-INDEL
DLK1	8788	hgsc.bcm.edu	hg19	14	101200644	101200644	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DLK1	NM_003836	exon5	c.562delA	p.I188fs	.	.	211.0	13.0	190.0	0.0	.	57	.	.	Atlas-INDEL
XPO1	7514	hgsc.bcm.edu	hg19	2	61719275	61719275	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPO1	NM_003400	exon16	c.1783delT	p.C595fs	.	.	146.0	10.0	138.0	0.0	.	108	.	.	Atlas-INDEL
FAM83B	222584	hgsc.bcm.edu	hg19	6	54735393	54735393	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM83B	NM_001010872	exon2	c.348delA	p.L116fs	.	.	184.0	12.0	124.0	0.0	.	186	.	.	Atlas-INDEL
TIAM1	7074	hgsc.bcm.edu	hg19	21	32519299	32519299	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TIAM1	NM_003253	exon21	c.3390delA	p.G1130fs	.	.	155.0	10.0	194.0	0.0	.	522	.	.	Atlas-INDEL
KCNG3	170850	hgsc.bcm.edu	hg19	2	42671493	42671493	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNG3	NM_133329	exon2	c.893delG	p.W298fs	.	.	173.0	12.0	116.0	0.0	.	19	.	.	Atlas-INDEL
AGXT2	64902	hgsc.bcm.edu	hg19	5	35025928	35025928	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AGXT2	NM_031900	exon9	c.904delT	p.F302fs	.	.	139.0	12.0	89.0	0.0	.	89	.	.	Atlas-INDEL
ELMO1	9844	hgsc.bcm.edu	hg19	7	37252948	37252948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELMO1	NM_014800	exon12	c.947delA	p.Q316fs	.	.	232.0	15.0	142.0	0.0	.	141	.	.	Atlas-INDEL
NCAPH2	29781	hgsc.bcm.edu	hg19	22	50957703	50957703	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NCAPH2	NM_152299	exon9	c.814delG	p.A272fs	.	.	187.0	12.0	175.0	0.0	.	69	.	.	Atlas-INDEL
RC3H2	54542	hgsc.bcm.edu	hg19	9	125652757	125652757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RC3H2	NM_018835	exon4	c.418delT	p.C140fs	.	.	173.0	11.0	137.0	0.0	.	150	.	.	Atlas-INDEL
ARHGAP33	115703	hgsc.bcm.edu	hg19	19	36278689	36278689	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP33	NM_052948	exon21	c.2738delG	p.G913fs	.	.	157.0	10.0	136.0	0.0	.	102	.	.	Atlas-INDEL
POTEF	728378	hgsc.bcm.edu	hg19	2	130865619	130865619	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POTEF	NM_001099771	exon8	c.1090delC	p.Q364fs	.	.	247.0	17.0	238.0	0.0	.	140	.	.	Atlas-INDEL
VAPB	9217	hgsc.bcm.edu	hg19	20	57019177	57019177	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VAPB	NM_004738	exon6	c.617delG	p.S206fs	.	.	174.0	12.0	159.0	0.0	.	21	.	.	Atlas-INDEL
COL9A2	1298	hgsc.bcm.edu	hg19	1	40776921	40776921	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL9A2	NM_001852	exon11	c.558delA	p.P186fs	.	.	147.0	11.0	77.0	0.0	.	63	.	.	Atlas-INDEL
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76486452	76486452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNTNAP4	NM_138994	exon7	c.899delC	p.T300fs	.	.	127.0	10.0	138.0	0.0	.	600	.	.	Atlas-INDEL
ZFAND5	7763	hgsc.bcm.edu	hg19	9	74974352	74974352	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFAND5	NM_001102420	exon5	c.350delC	p.T117fs	.	.	116.0	10.0	105.0	0.0	.	14	.	.	Atlas-INDEL
ZNF597	146434	hgsc.bcm.edu	hg19	16	3486565	3486565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF597	NM_152457	exon4	c.1135delG	p.A379fs	.	.	163.0	10.0	135.0	0.0	.	41	.	.	Atlas-INDEL
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7214583	7214583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SFMBT2	NM_001029880	exon18	c.2026delA	p.I676fs	.	.	217.0	17.0	203.0	0.0	.	209	.	.	Atlas-INDEL
CREB3L4	148327	hgsc.bcm.edu	hg19	1	153941909	153941909	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CREB3L4	NM_001255978	exon4	c.520delG	p.A174fs	.	.	165.0	10.0	90.0	0.0	.	36	.	.	Atlas-INDEL
EEA1	8411	hgsc.bcm.edu	hg19	12	93251072	93251072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EEA1	NM_003566	exon5	c.346delT	p.Y116fs	.	.	276.0	20.0	209.0	0.0	.	104	.	.	Atlas-INDEL
TRMT10B	158234	hgsc.bcm.edu	hg19	9	37762657	37762657	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_144964	exon3	c.269delG	p.R90fs	.	.	158.0	10.0	190.0	0.0	.	.	.	.	Atlas-INDEL
PALM3	342979	hgsc.bcm.edu	hg19	19	14164636	14164636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PALM3	NM_001145028	exon6	c.1804delT	p.L602fs	.	.	140.0	11.0	95.0	0.0	.	26	.	.	Atlas-INDEL
CTXN2	399697	hgsc.bcm.edu	hg19	15	48493577	48493577	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTXN2	NM_001145668	exon2	c.79delC	p.Q27fs	.	.	328.0	20.0	278.0	0.0	.	8	.	.	Atlas-INDEL
C1orf172	126695	hgsc.bcm.edu	hg19	1	27278443	27278443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1orf172	NM_152365	exon2	c.430delA	p.S144fs	.	.	351.0	22.0	181.0	0.0	.	38	.	.	Atlas-INDEL
TLR10	81793	hgsc.bcm.edu	hg19	4	38777029	38777029	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLR10	NM_030956	exon4	c.184delC	p.Q62fs	.	.	200.0	13.0	166.0	0.0	.	87	.	.	Atlas-INDEL
SLC30A3	7781	hgsc.bcm.edu	hg19	2	27480186	27480186	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC30A3	NM_003459	exon5	c.614delA	p.H205fs	.	.	163.0	11.0	136.0	0.0	.	39	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27087916	27087916	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARID1A	NM_006015	exon6	c.2202delC	p.D734fs	.	.	505.0	34.0	326.0	0.0	.	842	.	.	Atlas-Indel,Pindel
COL9A3	1299	hgsc.bcm.edu	hg19	20	61450582	61450582	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL9A3	NM_001853	exon4	c.191delA	p.K64fs	.	.	199.0	13.0	180.0	0.0	.	70	.	.	Atlas-INDEL
WDR35	57539	hgsc.bcm.edu	hg19	2	20188946	20188946	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR35	NM_020779	exon2	c.123delG	p.L41fs	.	.	160.0	10.0	137.0	0.0	.	92	.	.	Atlas-INDEL
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160182380	160182380	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BAZ2B	NM_013450	exon35	c.5994delG	p.K1998fs	.	.	173.0	13.0	133.0	0.0	.	196	.	.	Atlas-INDEL
KCNIP1	30820	hgsc.bcm.edu	hg19	5	170139893	170139893	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNIP1	NM_001034837	exon2	c.94+2A>-	.	.	.	174.0	12.0	107.0	0.0	.	66	.	.	Atlas-INDEL
CYC1	1537	hgsc.bcm.edu	hg19	8	145150814	145150814	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CYC1	NM_001916	exon2	c.207delA	p.A69fs	.	.	239.0	15.0	62.0	0.0	.	34	.	.	Atlas-INDEL
C17orf47	284083	hgsc.bcm.edu	hg19	17	56620577	56620577	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C17orf47	NM_001038704	exon1	c.972delA	p.P324fs	.	.	178.0	11.0	163.0	0.0	.	59	.	.	Atlas-INDEL
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14031386	14031386	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CC2D1A	NM_017721	exon13	c.1372delG	p.A458fs	.	.	193.0	13.0	183.0	0.0	.	67	.	.	Atlas-INDEL
ACVR1	90	hgsc.bcm.edu	hg19	2	158622477	158622477	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACVR1	NM_001105	exon8	c.1023delT	p.N341fs	.	.	160.0	10.0	141.0	0.0	.	52	.	.	Atlas-INDEL
C11orf54	28970	hgsc.bcm.edu	hg19	11	93492928	93492928	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C11orf54	NM_014039	exon7	c.527delG	p.C176fs	.	.	165.0	11.0	102.0	0.0	.	23	.	.	Atlas-INDEL
TACSTD2	4070	hgsc.bcm.edu	hg19	1	59041883	59041883	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TACSTD2	NM_002353	exon1	c.947delA	p.E316fs	.	.	121.0	10.0	64.0	0.0	.	6	.	.	Atlas-INDEL
ROBO1	6091	hgsc.bcm.edu	hg19	3	78710322	78710322	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ROBO1	NM_002941	exon16	c.2179delG	p.E727fs	.	.	165.0	10.0	127.0	0.0	.	833	.	.	Atlas-INDEL
FAM21A	387680	hgsc.bcm.edu	hg19	10	51829353	51829353	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM21A	NM_001005751	exon3	c.172delA	p.T58fs	.	.	191.0	12.0	187.0	0.0	.	32	.	.	Atlas-INDEL
ABL2	27	hgsc.bcm.edu	hg19	1	179086622	179086622	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABL2	NM_007314	exon8	c.1254delA	p.G418fs	.	.	182.0	12.0	94.0	0.0	.	307	.	.	Atlas-INDEL
UTP20	27340	hgsc.bcm.edu	hg19	12	101746865	101746865	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UTP20	NM_014503	exon40	c.5064delC	p.H1688fs	.	.	186.0	13.0	141.0	0.0	.	222	.	.	Atlas-INDEL
SNRNP48	154007	hgsc.bcm.edu	hg19	6	7594353	7594353	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNRNP48	NM_152551	exon3	c.291delG	p.E97fs	.	.	176.0	11.0	98.0	0.0	.	32	.	.	Atlas-INDEL
FBXL13	222235	hgsc.bcm.edu	hg19	7	102665640	102665640	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FBXL13	NM_145032	exon6	c.366delT	p.N122fs	.	.	163.0	11.0	103.0	0.0	.	65	.	.	Atlas-INDEL
PDCD11	22984	hgsc.bcm.edu	hg19	10	105205170	105205170	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDCD11	NM_014976	exon36	c.5479delG	p.A1827fs	.	.	175.0	12.0	174.0	0.0	.	160	.	.	Atlas-INDEL
RPS3A	6189	hgsc.bcm.edu	hg19	4	152025347	152025347	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPS3A	NM_001006	exon5	c.581delG	p.G194fs	.	.	159.0	10.0	153.0	0.0	.	11	.	.	Atlas-INDEL
CTBP1	1487	hgsc.bcm.edu	hg19	4	1206096	1206096	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTBP1	NM_001328	exon9	c.1256delA	p.H419fs	.	.	180.0	11.0	177.0	0.0	.	30	.	.	Atlas-INDEL
RASAL1	8437	hgsc.bcm.edu	hg19	12	113553545	113553545	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RASAL1	NM_004658	exon11	c.899delA	p.D300fs	.	.	194.0	12.0	119.0	0.0	.	89	.	.	Atlas-INDEL
OR4X1	390113	hgsc.bcm.edu	hg19	11	48286313	48286313	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR4X1	NM_001004726	exon1	c.900delT	p.I300fs	.	.	152.0	11.0	114.0	0.0	.	75	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179429759	179429759	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTN	NM_001267550	exon326	c.81101delT	p.I27034fs	.	.	176.0	11.0	163.0	0.0	.	18412	.	.	Atlas-INDEL
HECTD1	25831	hgsc.bcm.edu	hg19	14	31617960	31617960	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HECTD1	NM_015382	exon15	c.2464delC	p.L822X	.	.	178.0	11.0	189.0	0.0	.	159	.	.	Atlas-INDEL
BBX	56987	hgsc.bcm.edu	hg19	3	107497314	107497314	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BBX	NM_001142568	exon13	c.2150delG	p.R717fs	.	.	275.0	20.0	187.0	0.0	.	156	.	.	Atlas-INDEL
PRSS57	400668	hgsc.bcm.edu	hg19	19	687117	687117	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRSS57	NM_214710	exon4	c.454delA	p.T152fs	.	.	175.0	11.0	155.0	0.0	.	18	.	.	Atlas-INDEL
TLR1	7096	hgsc.bcm.edu	hg19	4	38800352	38800352	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLR1	NM_003263	exon4	c.102delC	p.N34fs	.	.	151.0	11.0	127.0	0.0	.	70	.	.	Atlas-INDEL
PPOX	5498	hgsc.bcm.edu	hg19	1	161140706	161140706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPOX	NM_001122764	exon12	c.1257delT	p.I419fs	.	.	120.0	10.0	87.0	0.0	.	34	.	.	Atlas-INDEL
LYPD1	116372	hgsc.bcm.edu	hg19	2	133403775	133403775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LYPD1	NM_144586	exon3	c.270delA	p.P90fs	.	.	156.0	10.0	117.0	0.0	.	11	.	.	Atlas-INDEL
TCEB3	6924	hgsc.bcm.edu	hg19	1	24077422	24077422	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TCEB3	NM_003198	exon4	c.404delA	p.E135fs	.	.	128.0	10.0	70.0	0.0	.	61	.	.	Atlas-INDEL
C3orf30	152405	hgsc.bcm.edu	hg19	3	118867142	118867142	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C3orf30	NM_152539	exon2	c.1513delG	p.E505fs	.	.	279.0	18.0	170.0	0.0	.	64	.	.	Atlas-INDEL
AQR	9716	hgsc.bcm.edu	hg19	15	35174733	35174733	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AQR	NM_014691	exon27	c.3136delC	p.R1046fs	.	.	149.0	10.0	161.0	0.0	.	139	.	.	Atlas-INDEL
PKD2L1	9033	hgsc.bcm.edu	hg19	10	102054379	102054379	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PKD2L1	NM_016112	exon9	c.1573delG	p.D525fs	.	.	157.0	10.0	128.0	0.0	.	103	.	.	Atlas-INDEL
ZNF678	339500	hgsc.bcm.edu	hg19	1	227843509	227843509	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF678	NM_178549	exon4	c.1722delT	p.C574X	.	.	189.0	12.0	120.0	0.0	.	137	.	.	Atlas-INDEL
ALPK2	115701	hgsc.bcm.edu	hg19	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ALPK2	NM_052947	exon4	c.1569delG	p.K523fs	.	.	124.0	10.0	105.0	0.0	.	487	.	.	Atlas-INDEL
SORBS2	8470	hgsc.bcm.edu	hg19	4	186583322	186583322	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORBS2	NM_001145673	exon6	c.568delT	p.S190fs	.	.	225.0	15.0	209.0	0.0	.	300	.	.	Atlas-INDEL
VIL1	7429	hgsc.bcm.edu	hg19	2	219292980	219292980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VIL1	NM_007127	exon6	c.486delA	p.R162fs	.	.	186.0	12.0	213.0	0.0	.	65	.	.	Atlas-INDEL
VCAM1	7412	hgsc.bcm.edu	hg19	1	101197977	101197977	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VCAM1	NM_001078	exon7	c.1528delG	p.A510fs	.	.	101.0	11.0	57.0	0.0	.	111	.	.	Atlas-INDEL
RPL18A	6142	hgsc.bcm.edu	hg19	19	17973742	17973742	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPL18A	NM_000980	exon4	c.343delG	p.A115fs	.	.	155.0	10.0	112.0	0.0	.	15	.	.	Atlas-INDEL
ABCA5	23461	hgsc.bcm.edu	hg19	17	67282042	67282042	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCA5	NM_018672	exon16	c.2270delC	p.S757X	.	.	178.0	13.0	93.0	0.0	.	162	.	.	Atlas-INDEL
ITGA6	3655	hgsc.bcm.edu	hg19	2	173355995	173355995	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGA6	NM_000210	exon22	c.2824delC	p.R942fs	.	.	183.0	11.0	152.0	0.0	.	171	.	.	Atlas-INDEL
DSEL	92126	hgsc.bcm.edu	hg19	18	65178866	65178866	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSEL	NM_032160	exon2	c.3011delA	p.Y1004fs	.	.	147.0	13.0	135.0	0.0	.	196	.	.	Atlas-INDEL
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95531264	95531264	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1429	NM_015496	exon9	c.2463delT	p.N821fs	.	.	160.0	10.0	51.0	0.0	.	176	.	.	Atlas-INDEL
AMFR	267	hgsc.bcm.edu	hg19	16	56441911	56441911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AMFR	NM_001144	exon4	c.632delA	p.H211fs	.	.	196.0	12.0	196.0	0.0	.	40	.	.	Atlas-INDEL
BET3L	100128327	hgsc.bcm.edu	hg19	6	116818135	116818135	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BET3L	NM_001139444	exon5	c.529delT	p.Y177fs	.	.	207.0	14.0	145.0	0.0	.	18	.	.	Atlas-INDEL
BDP1	55814	hgsc.bcm.edu	hg19	5	70806693	70806693	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BDP1	NM_018429	exon17	c.3773delG	p.G1258fs	.	.	175.0	11.0	71.0	0.0	.	204	.	.	Atlas-INDEL
ZRANB1	54764	hgsc.bcm.edu	hg19	10	126670335	126670335	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZRANB1	NM_017580	exon6	c.1484delA	p.H495fs	.	.	179.0	11.0	145.0	0.0	.	60	.	.	Atlas-INDEL
AOX1	316	hgsc.bcm.edu	hg19	2	201485931	201485931	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AOX1	NM_001159	exon18	c.1962delC	p.C654fs	.	.	186.0	12.0	169.0	0.0	.	152	.	.	Atlas-INDEL
ADCY10	55811	hgsc.bcm.edu	hg19	1	167780125	167780125	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADCY10	NM_018417	exon32	c.4509delT	p.N1503fs	.	.	216.0	13.0	141.0	0.0	.	175	.	.	Atlas-INDEL
LRP12	29967	hgsc.bcm.edu	hg19	8	105503191	105503191	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRP12	NM_013437	exon7	c.2291delT	p.V764fs	.	.	182.0	11.0	24.0	0.0	.	124	.	.	Atlas-INDEL
MIR205HG	642587	hgsc.bcm.edu	hg19	1	209602687	209602687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001104548	exon2	c.44delG	p.G15fs	.	.	162.0	10.0	68.0	0.0	.	.	.	.	Atlas-INDEL
CAMSAP2	23271	hgsc.bcm.edu	hg19	1	200818368	200818368	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_203459	exon11	c.2470delC	p.Q824fs	.	.	197.0	12.0	100.0	0.0	.	.	.	.	Atlas-INDEL
P2RY12	64805	hgsc.bcm.edu	hg19	3	151055960	151055960	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	P2RY12	NM_022788	exon3	c.675delT	p.G225fs	.	.	166.0	13.0	109.0	0.0	.	36	.	.	Atlas-INDEL
GABRA1	2554	hgsc.bcm.edu	hg19	5	161277851	161277851	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GABRA1	NM_001127644	exon2	c.34delT	p.W12fs	.	.	235.0	15.0	139.0	0.0	.	132	.	.	Atlas-INDEL
AIM1L	55057	hgsc.bcm.edu	hg19	1	26670276	26670276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AIM1L	NM_001039775	exon2	c.2874delA	p.P958fs	.	.	154.0	10.0	105.0	0.0	.	98	.	.	Atlas-INDEL
NUP85	79902	hgsc.bcm.edu	hg19	17	73221299	73221299	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NUP85	NM_024844	exon8	c.698delT	p.M233fs	.	.	150.0	10.0	93.0	0.0	.	44	.	.	Atlas-INDEL
POLB	5423	hgsc.bcm.edu	hg19	8	42213041	42213041	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLB	NM_002690	exon7	c.377delG	p.R126fs	.	.	158.0	10.0	264.0	0.0	.	60	.	.	Atlas-INDEL
POLR3A	11128	hgsc.bcm.edu	hg19	10	79745906	79745906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLR3A	NM_007055	exon22	c.2914delT	p.F972fs	.	.	160.0	10.0	97.0	0.0	.	104	.	.	Atlas-INDEL
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29429604	29429604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRAPPC8	NM_014939	exon25	c.3661delC	p.Q1221fs	.	.	159.0	10.0	146.0	0.0	.	126	.	.	Atlas-INDEL
OR6C68	403284	hgsc.bcm.edu	hg19	12	55886489	55886489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR6C68	NM_001005519	exon1	c.327delA	p.E109fs	.	.	153.0	11.0	145.0	0.0	.	36	.	.	Atlas-INDEL
ASIC2	40	hgsc.bcm.edu	hg19	17	31439005	31439005	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,2	.	NM_183377	exon2	c.790delA	p.T264fs	.	.	153.0	10.0	146.0	0.0	.	.	.	.	Atlas-INDEL
ITGB2	3689	hgsc.bcm.edu	hg19	21	46309403	46309403	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGB2	NM_000211	exon13	c.1666delC	p.L556fs	.	.	166.0	10.0	134.0	0.0	.	107	.	.	Atlas-INDEL
DDX4	54514	hgsc.bcm.edu	hg19	5	55110940	55110940	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX4	NM_024415	exon20	c.1926delC	p.S642fs	.	.	466.0	29.0	295.0	0.0	.	194	.	.	Atlas-INDEL
ANKRD18B	441459	hgsc.bcm.edu	hg19	9	33536901	33536901	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD18B	NM_001244752	exon6	c.765delT	p.H255fs	.	.	199.0	13.0	167.0	0.0	.	46	.	.	Atlas-INDEL
ANKAR	150709	hgsc.bcm.edu	hg19	2	190569839	190569839	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKAR	NM_144708	exon8	c.1798delG	p.E600fs	.	.	152.0	10.0	144.0	0.0	.	184	.	.	Atlas-INDEL
IFNG	3458	hgsc.bcm.edu	hg19	12	68551987	68551987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IFNG	NM_000619	exon2	c.168delG	p.L56fs	.	.	76.0	11.0	106.0	0.0	.	38	.	.	Atlas-INDEL
SLIT3	6586	hgsc.bcm.edu	hg19	5	168127640	168127640	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLIT3	NM_001271946	exon27	c.2911delT	p.C971fs	.	.	273.0	18.0	140.0	0.0	.	224	.	.	Atlas-INDEL
CRELD2	79174	hgsc.bcm.edu	hg19	22	50319089	50319089	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRELD2	NM_001135101	exon10	c.1039delG	p.E347fs	.	.	137.0	10.0	123.0	0.0	.	57	.	.	Atlas-INDEL
MRPS18B	28973	hgsc.bcm.edu	hg19	6	30587360	30587360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRPS18B	NM_014046	exon2	c.168delG	p.W56X	.	.	151.0	10.0	102.0	0.0	.	22	.	.	Atlas-INDEL
RYR2	6262	hgsc.bcm.edu	hg19	1	237957192	237957192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RYR2	NM_001035	exon95	c.13807delG	p.E4603fs	.	.	200.0	12.0	114.0	0.0	.	1273	.	.	Atlas-INDEL
TOX4	9878	hgsc.bcm.edu	hg19	14	21957371	21957371	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOX4	NM_014828	exon5	c.618delG	p.G206fs	.	.	120.0	11.0	111.0	0.0	.	50	.	.	Atlas-INDEL
NDST3	9348	hgsc.bcm.edu	hg19	4	118975821	118975821	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NDST3	NM_004784	exon2	c.755delC	p.A252fs	.	.	180.0	11.0	173.0	0.0	.	107	.	.	Atlas-INDEL
C4orf45	152940	hgsc.bcm.edu	hg19	4	159894380	159894380	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C4orf45	NM_152543	exon2	c.149delC	p.T50fs	.	.	134.0	10.0	136.0	0.0	.	8	.	.	Atlas-INDEL
TREX1	11277	hgsc.bcm.edu	hg19	3	48508447	48508447	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TREX1	NM_016381	exon1	c.557delT	p.F186fs	.	.	152.0	10.0	111.0	0.0	.	17	.	.	Atlas-INDEL
OR10A3	26496	hgsc.bcm.edu	hg19	11	7960747	7960747	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR10A3	NM_001003745	exon1	c.322delG	p.G108fs	.	.	161.0	13.0	87.0	0.0	.	54	.	.	Atlas-INDEL
C17orf85	55421	hgsc.bcm.edu	hg19	17	3716454	3716454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C17orf85	NM_001114118	exon13	c.1748delC	p.A583fs	.	.	151.0	13.0	206.0	0.0	.	66	.	.	Atlas-INDEL
SYVN1	84447	hgsc.bcm.edu	hg19	11	64897763	64897763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYVN1	NM_032431	exon12	c.1195delA	p.S399fs	.	.	153.0	10.0	107.0	0.0	.	55	.	.	Atlas-INDEL
HTATIP2	10553	hgsc.bcm.edu	hg19	11	20398242	20398242	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	HTATIP2_ENST00000419348,NS,carcinoma,0,3	HTATIP2	NM_001098520	exon4	c.521delA	p.N174fs	.	.	167.0	13.0	127.0	0.0	.	30	.	.	Atlas-INDEL
SALL4	57167	hgsc.bcm.edu	hg19	20	50408744	50408744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL4	NM_020436	exon2	c.279delT	p.N93fs	.	.	103.0	10.0	73.0	0.0	.	168	.	.	Atlas-INDEL
DNAH14	127602	hgsc.bcm.edu	hg19	1	225230572	225230572	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH14	NM_001373	exon13	c.1523delG	p.R508fs	.	.	314.0	20.0	154.0	0.0	.	300	.	.	Atlas-INDEL
RPS4Y2	140032	hgsc.bcm.edu	hg19	Y	22921883	22921883	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPS4Y2	NM_001039567	exon3	c.210delC	p.L70fs	.	.	166.0	10.0	143.0	0.0	.	3	.	.	Atlas-INDEL
WDR64	128025	hgsc.bcm.edu	hg19	1	241936138	241936138	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR64	NM_144625	exon19	c.2304delC	p.D768fs	.	.	164.0	12.0	110.0	0.0	.	234	.	.	Atlas-INDEL
COL3A1	1281	hgsc.bcm.edu	hg19	2	189852856	189852856	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	COL3A1	NM_000090	exon6	c.577delT	p.S193fs	.	.	321.0	20.0	276.0	0.0	.	292	.	.	Atlas-INDEL
ARHGEF5	7984	hgsc.bcm.edu	hg19	7	144075858	144075858	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGEF5	NM_005435	exon14	c.4534delT	p.S1512fs	.	.	227.0	14.0	158.0	0.0	.	73	.	.	Atlas-INDEL
KCNQ5	56479	hgsc.bcm.edu	hg19	6	73787525	73787525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNQ5	NM_001160132	exon5	c.832delA	p.I278fs	.	.	183.0	11.0	114.0	0.0	.	153	.	.	Atlas-INDEL
CAV2	858	hgsc.bcm.edu	hg19	7	116140387	116140387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CAV2	NM_001233	exon2	c.223delG	p.A75fs	.	.	157.0	11.0	101.0	0.0	.	10	.	.	Atlas-INDEL
HOXA9	3205	hgsc.bcm.edu	hg19	7	27204507	27204507	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HOXA9	NM_152739	exon1	c.571delA	p.I191fs	.	.	157.0	11.0	88.0	0.0	.	20	.	.	Atlas-INDEL
OR4A5	81318	hgsc.bcm.edu	hg19	11	51411652	51411652	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR4A5	NM_001005272	exon1	c.745delG	p.V249fs	.	.	143.0	13.0	86.0	0.0	.	116	.	.	Atlas-INDEL
PMS1	5378	hgsc.bcm.edu	hg19	2	190719511	190719511	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PMS1	NM_001128144	exon9	c.1512delT	p.L504fs	.	.	162.0	11.0	145.0	0.0	.	78	.	.	Atlas-INDEL
TOP3A	7156	hgsc.bcm.edu	hg19	17	18217965	18217965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOP3A	NM_004618	exon1	c.129delC	p.N43fs	.	.	156.0	13.0	132.0	0.0	.	85	.	.	Atlas-INDEL
UGT1A1	54658	hgsc.bcm.edu	hg19	2	234668947	234668947	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGT1A1	NM_000463	exon1	c.13delT	p.S5fs	.	.	159.0	10.0	135.0	0.0	.	81	.	.	Atlas-INDEL
ERG	2078	hgsc.bcm.edu	hg19	21	39755389	39755389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERG	NM_001136154	exon12	c.1398delT	p.G466fs	.	.	156.0	14.0	145.0	0.0	.	78	.	.	Atlas-INDEL
CCDC47	57003	hgsc.bcm.edu	hg19	17	61831827	61831827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC47	NM_020198	exon9	c.1001delC	p.S334X	.	.	326.0	20.0	243.0	0.0	.	34	.	.	Atlas-INDEL
DOK4	55715	hgsc.bcm.edu	hg19	16	57507902	57507902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOK4	NM_018110	exon7	c.650delA	p.E217fs	.	.	159.0	11.0	155.0	0.0	.	19	.	.	Atlas-INDEL
PRR16	51334	hgsc.bcm.edu	hg19	5	120022115	120022115	+	Frame_Shift_Del	DEL	A	A	-	rs35167981		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRR16	NM_016644	exon3	c.556delG	p.E186fs	.	.	167.0	11.0	107.0	0.0	.	71	.	.	Atlas-INDEL
LHX1	3975	hgsc.bcm.edu	hg19	17	35300095	35300095	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LHX1	NM_005568	exon5	c.887delT	p.F296fs	.	.	153.0	10.0	119.0	0.0	.	48	.	.	Atlas-INDEL
MLL3	58508	hgsc.bcm.edu	hg19	7	151848557	151848557	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL3	NM_170606	exon50	c.12637delT	p.S4213fs	.	.	157.0	11.0	92.0	0.0	.	1564	.	.	Atlas-INDEL
TENM4	26011	hgsc.bcm.edu	hg19	11	78423720	78423720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001098816	exon26	c.3862delA	p.M1288X	.	.	148.0	10.0	77.0	0.0	.	.	.	.	Atlas-INDEL
SMAD3	4088	hgsc.bcm.edu	hg19	15	67482771	67482771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMAD3	NM_005902	exon9	c.1174delA	p.T392fs	.	.	147.0	10.0	133.0	0.0	.	119	.	.	Atlas-INDEL
SOS1	6654	hgsc.bcm.edu	hg19	2	39262357	39262357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS1	NM_005633	exon8	c.1071delG	p.L357fs	.	.	173.0	11.0	163.0	0.0	.	134	.	.	Atlas-INDEL
HDAC6	10013	hgsc.bcm.edu	hg19	X	48661166	48661166	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HDAC6	NM_006044	exon2	c.66delG	p.S22fs	.	.	147.0	10.0	123.0	0.0	.	111	.	.	Atlas-INDEL
HSPG2	3339	hgsc.bcm.edu	hg19	1	22178628	22178628	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPG2	NM_005529	exon53	c.6824delA	p.Q2275fs	.	.	243.0	15.0	114.0	0.0	.	311	.	.	Atlas-INDEL
UGGT2	55757	hgsc.bcm.edu	hg19	13	96684195	96684195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGGT2	NM_020121	exon2	c.190delT	p.F64fs	.	.	203.0	13.0	140.0	0.0	.	127	.	.	Atlas-INDEL
PTTG1	9232	hgsc.bcm.edu	hg19	5	159851311	159851311	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTTG1	NM_004219	exon4	c.343delG	p.E115fs	.	.	173.0	11.0	104.0	0.0	.	15	.	.	Atlas-INDEL
HECTD4	283450	hgsc.bcm.edu	hg19	12	112622648	112622648	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001109662	exon61	c.9721delC	p.L3241fs	.	.	183.0	11.0	84.0	0.0	.	.	.	.	Atlas-INDEL
ZFP41	286128	hgsc.bcm.edu	hg19	8	144332034	144332034	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZFP41	NM_173832	exon2	c.20delG	p.R7fs	.	.	198.0	13.0	47.0	0.0	.	25	.	.	Atlas-INDEL
MIA3	375056	hgsc.bcm.edu	hg19	1	222824154	222824154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MIA3	NM_198551	exon11	c.3817delG	p.E1273fs	.	.	250.0	17.0	143.0	0.0	.	167	.	.	Atlas-INDEL
AP1S2	8905	hgsc.bcm.edu	hg19	X	15864073	15864073	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AP1S2	NM_001272071	exon3	c.242delA	p.E81fs	.	.	165.0	10.0	130.0	0.0	.	9	.	.	Atlas-INDEL
ZC3H6	376940	hgsc.bcm.edu	hg19	2	113089974	113089974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZC3H6	NM_198581	exon12	c.3478delA	p.T1160fs	.	.	166.0	11.0	112.0	0.0	.	93	.	.	Atlas-INDEL
ST5	6764	hgsc.bcm.edu	hg19	11	8736195	8736195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ST5	NM_213618	exon7	c.1905delG	p.K635fs	.	.	186.0	15.0	134.0	0.0	.	85	.	.	Atlas-INDEL
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2722560	2722560	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCHD1	NM_015295	exon20	c.2501delC	p.P834fs	.	.	162.0	10.0	149.0	0.0	.	88	.	.	Atlas-INDEL
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140178605	140178605	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLSTN2	NM_022131	exon7	c.1215delC	p.D405fs	.	.	211.0	15.0	102.0	0.0	.	190	.	.	Atlas-INDEL
VPS26A	9559	hgsc.bcm.edu	hg19	10	70928313	70928313	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS26A	NM_004896	exon8	c.795delC	p.N265fs	.	.	168.0	13.0	142.0	0.0	.	24	.	.	Atlas-INDEL
KCNMA1	3778	hgsc.bcm.edu	hg19	10	78799310	78799310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNMA1	NM_002247	exon15	c.1836delT	p.G612fs	.	.	157.0	10.0	117.0	0.0	.	370	.	.	Atlas-INDEL
YIF1B	90522	hgsc.bcm.edu	hg19	19	38796095	38796095	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	YIF1B	NM_001039672	exon8	c.843delG	p.P281fs	.	.	162.0	10.0	161.0	0.0	.	47	.	.	Atlas-INDEL
P2RX3	5024	hgsc.bcm.edu	hg19	11	57118235	57118235	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	P2RX3	NM_002559	exon8	c.706-2G>-	.	.	.	195.0	14.0	145.0	0.0	.	55	.	.	Atlas-INDEL
UTP11L	51118	hgsc.bcm.edu	hg19	1	38483393	38483393	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UTP11L	NM_016037	exon3	c.178delG	p.E60fs	.	.	262.0	16.0	160.0	0.0	.	17	.	.	Atlas-INDEL
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37234290	37234290	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HEATR5B	NM_019024	exon29	c.4681delC	p.R1561fs	.	.	152.0	12.0	119.0	0.0	.	185	.	.	Atlas-INDEL
SMC1B	27127	hgsc.bcm.edu	hg19	22	45798221	45798221	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SMC1B,NS,carcinoma,0,1	SMC1B	NM_148674	exon5	c.847delG	p.E283fs	.	.	192.0	12.0	149.0	0.0	.	215	.	.	Atlas-INDEL
UGT2B7	7364	hgsc.bcm.edu	hg19	4	69962593	69962593	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	UGT2B7	NM_001074	exon1	c.354delA	p.I118fs	.	.	164.0	10.0	132.0	0.0	.	79	.	.	Atlas-INDEL
MAP7D3	79649	hgsc.bcm.edu	hg19	X	135313838	135313838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAP7D3	NM_024597	exon8	c.1279delA	p.K427fs	.	.	142.0	10.0	141.0	0.0	.	102	.	.	Atlas-INDEL
C2orf71	388939	hgsc.bcm.edu	hg19	2	29293880	29293880	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C2orf71	NM_001029883	exon1	c.3249delT	p.P1083fs	.	.	102.0	10.0	57.0	0.0	.	146	.	.	Atlas-INDEL
SOX6	55553	hgsc.bcm.edu	hg19	11	16208476	16208476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX6	NM_001145819	exon5	c.601delG	p.E201fs	.	.	175.0	11.0	114.0	0.0	.	149	.	.	Atlas-INDEL
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5954073	5954073	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA2026	NM_001017969	exon4	c.2236delG	p.A746fs	.	.	135.0	10.0	138.0	0.0	.	231	.	.	Atlas-INDEL
TLK1	9874	hgsc.bcm.edu	hg19	2	171862754	171862754	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TLK1	NM_012290	exon18	c.1808delT	p.I603fs	.	.	195.0	12.0	174.0	0.0	.	134	.	.	Atlas-INDEL
CRELD1	78987	hgsc.bcm.edu	hg19	3	9976237	9976237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRELD1	NM_001077415	exon2	c.114delT	p.S38fs	.	.	167.0	11.0	139.0	0.0	.	48	.	.	Atlas-INDEL
PABPC4	8761	hgsc.bcm.edu	hg19	1	40028016	40028016	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PABPC4	NM_001135653	exon13	c.1742delA	p.Q581fs	.	.	248.0	16.0	135.0	0.0	.	56	.	.	Atlas-INDEL
BBS9	27241	hgsc.bcm.edu	hg19	7	33217199	33217199	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BBS9	NM_014451	exon5	c.437delT	p.V146fs	.	.	99.0	11.0	75.0	0.0	.	194	.	.	Atlas-INDEL
LUZP4	51213	hgsc.bcm.edu	hg19	X	114536631	114536631	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LUZP4	NM_016383	exon2	c.165delT	p.S55fs	.	.	185.0	12.0	184.0	0.0	.	51	.	.	Atlas-INDEL
SECISBP2L	9728	hgsc.bcm.edu	hg19	15	49293086	49293086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SECISBP2L	NM_001193489	exon15	c.2237delT	p.I746fs	.	.	214.0	14.0	193.0	0.0	.	118	.	.	Atlas-INDEL
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27303455	27303455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD26	NM_014915	exon31	c.4693delG	p.V1565fs	.	.	152.0	10.0	146.0	0.0	.	179	.	.	Atlas-INDEL
THBS2	7058	hgsc.bcm.edu	hg19	6	169646335	169646336	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	THBS2	NM_003247	exon5	c.651_652del	p.217_218del	.	.	111.0	17.0	87.0	0.0	.	230	.	.	Atlas-INDEL
CACNA1F	778	hgsc.bcm.edu	hg19	X	49066137	49066137	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1F	NM_005183	exon41	c.4807delG	p.G1603fs	.	.	123.0	11.0	92.0	0.0	.	218	.	.	Atlas-INDEL
CES3	23491	hgsc.bcm.edu	hg19	16	66995238	66995238	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CES3	NM_024922	exon1	c.27delC	p.S9fs	.	.	191.0	12.0	162.0	0.0	.	56	.	.	Atlas-INDEL
VPS29	51699	hgsc.bcm.edu	hg19	12	110933940	110933940	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS29	NM_057180	exon3	c.85delC	p.L29fs	.	.	144.0	11.0	103.0	0.0	.	10	.	.	Atlas-INDEL
ELF1	1997	hgsc.bcm.edu	hg19	13	41523943	41523943	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELF1	NM_172373	exon5	c.529delG	p.G177fs	.	.	169.0	13.0	245.0	0.0	.	65	.	.	Atlas-INDEL
ADAM9	8754	hgsc.bcm.edu	hg19	8	38880753	38880753	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADAM9	NM_003816	exon9	c.822delT	p.V274fs	.	.	157.0	10.0	196.0	0.0	.	66	.	.	Atlas-INDEL
TBX10	347853	hgsc.bcm.edu	hg19	11	67402373	67402373	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TBX10	NM_005995	exon3	c.292delT	p.F98fs	.	.	188.0	16.0	109.0	0.0	.	25	.	.	Atlas-INDEL
TSKU	25987	hgsc.bcm.edu	hg19	11	76507185	76507185	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSKU	NM_015516	exon2	c.524delA	p.H175fs	.	.	159.0	10.0	102.0	0.0	.	26	.	.	Atlas-INDEL
ASPM	259266	hgsc.bcm.edu	hg19	1	197102505	197102505	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASPM	NM_001206846	exon6	c.2395delG	p.D799fs	.	.	179.0	11.0	100.0	0.0	.	444	.	.	Atlas-INDEL
GALNT16	57452	hgsc.bcm.edu	hg19	14	69795179	69795179	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GALNT16	NM_001168368	exon6	c.580delT	p.S194fs	.	.	103.0	10.0	76.0	0.0	.	8	.	.	Atlas-INDEL
SF3B1	23451	hgsc.bcm.edu	hg19	2	198285793	198285793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SF3B1	NM_001005526	exon3	c.261delT	p.P87fs	.	.	153.0	10.0	151.0	0.0	.	1038	.	.	Atlas-INDEL
DUSP12	11266	hgsc.bcm.edu	hg19	1	161726728	161726728	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUSP12	NM_007240	exon6	c.1013delG	p.G338fs	.	.	140.0	10.0	76.0	0.0	.	20	.	.	Atlas-INDEL
RBPMS2	348093	hgsc.bcm.edu	hg19	15	65040685	65040685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBPMS2	NM_194272	exon6	c.501delA	p.P167fs	.	.	149.0	10.0	124.0	0.0	.	14	.	.	Atlas-INDEL
WIBG	84305	hgsc.bcm.edu	hg19	12	56296053	56296053	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WIBG	NM_032345	exon3	c.219delA	p.P73fs	.	.	139.0	11.0	100.0	0.0	.	11	.	.	Atlas-INDEL
DUT	1854	hgsc.bcm.edu	hg19	15	48634251	48634251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DUT	NM_001025248	exon7	c.734delG	p.G245fs	.	.	198.0	12.0	165.0	0.0	.	9	.	.	Atlas-INDEL
ARHGAP20	57569	hgsc.bcm.edu	hg19	11	110454273	110454273	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP20	NM_020809	exon14	c.1605delG	p.K535fs	.	.	141.0	10.0	90.0	0.0	.	150	.	.	Atlas-INDEL
OR2T11	127077	hgsc.bcm.edu	hg19	1	248790265	248790265	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	OR2T11	NM_001001964	exon1	c.166delA	p.M56fs	.	.	196.0	12.0	102.0	0.0	.	64	.	.	Atlas-INDEL
AHDC1	27245	hgsc.bcm.edu	hg19	1	27875231	27875231	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHDC1	NM_001029882	exon6	c.3397delG	p.D1133fs	.	.	154.0	10.0	88.0	0.0	.	98	.	.	Atlas-INDEL
LRRC8B	23507	hgsc.bcm.edu	hg19	1	90049043	90049043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC8B	NM_015350	exon5	c.833delA	p.Y278fs	.	.	178.0	11.0	113.0	0.0	.	49	.	.	Atlas-INDEL
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33881513	33881513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,2	ADAMTS12	NM_030955	exon2	c.201delG	p.L67fs	.	.	143.0	10.0	122.0	0.0	.	464	.	.	Atlas-INDEL
PNPT1	87178	hgsc.bcm.edu	hg19	2	55907883	55907883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PNPT1	NM_033109	exon7	c.530delT	p.L177fs	.	.	180.0	11.0	139.0	0.0	.	68	.	.	Atlas-INDEL
CACNA1E	777	hgsc.bcm.edu	hg19	1	181701779	181701779	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CACNA1E	NM_000721	exon20	c.2556delT	p.R852fs	.	.	249.0	15.0	153.0	0.0	.	778	.	.	Atlas-INDEL
TIGD6	81789	hgsc.bcm.edu	hg19	5	149375707	149375707	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TIGD6	NM_001243253	exon2	c.206delG	p.R69fs	.	.	143.0	13.0	63.0	0.0	.	29	.	.	Atlas-INDEL
VWC2L	402117	hgsc.bcm.edu	hg19	2	215279116	215279116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VWC2L	NM_001080500	exon2	c.198delA	p.R66fs	.	.	115.0	10.0	121.0	0.0	.	40	.	.	Atlas-INDEL
TAX1BP1	8887	hgsc.bcm.edu	hg19	7	27827096	27827096	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAX1BP1	NM_001206901	exon8	c.911delT	p.L304X	.	.	171.0	14.0	116.0	0.0	.	71	.	.	Atlas-INDEL
AGO4	192670	hgsc.bcm.edu	hg19	1	36306817	36306817	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_017629	exon14	c.1775delA	p.H592fs	.	.	154.0	10.0	113.0	0.0	.	.	.	.	Atlas-INDEL
ZBTB21	49854	hgsc.bcm.edu	hg19	21	43414014	43414014	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001098402	exon3	c.192delT	p.N64fs	.	.	160.0	12.0	174.0	0.0	.	.	.	.	Atlas-INDEL
ATP7A	538	hgsc.bcm.edu	hg19	X	77245318	77245318	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP7A	NM_000052	exon4	c.1199delC	p.S400X	.	.	186.0	12.0	143.0	0.0	.	248	.	.	Atlas-INDEL
RABL2B	11158	hgsc.bcm.edu	hg19	22	51207957	51207957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RABL2B	NM_001130920	exon8	c.434delG	p.S145fs	.	.	438.0	28.0	388.0	0.0	.	8	.	.	Atlas-INDEL
RBMS3	27303	hgsc.bcm.edu	hg19	3	29628669	29628669	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBMS3	NM_001177712	exon4	c.371delC	p.A124fs	.	.	143.0	10.0	91.0	0.0	.	62	.	.	Atlas-INDEL
PRAME	23532	hgsc.bcm.edu	hg19	22	22892453	22892453	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRAME	NM_206954	exon5	c.649delG	p.A217fs	.	.	145.0	10.0	169.0	0.0	.	78	.	.	Atlas-INDEL
OR52E8	390079	hgsc.bcm.edu	hg19	11	5878820	5878820	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR52E8	NM_001005168	exon1	c.114delC	p.F38fs	.	.	213.0	19.0	128.0	0.0	.	54	.	.	Atlas-INDEL
RAP1GAP	5909	hgsc.bcm.edu	hg19	1	21936094	21936094	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RAP1GAP	NM_001145658	exon15	c.1238delT	p.L413fs	.	.	162.0	10.0	82.0	0.0	.	119	.	.	Atlas-INDEL
MDN1	23195	hgsc.bcm.edu	hg19	6	90382309	90382309	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MDN1	NM_014611	exon81	c.13588delG	p.A4530fs	.	.	193.0	12.0	149.0	0.0	.	478	.	.	Atlas-INDEL
JAG1	182	hgsc.bcm.edu	hg19	20	10622493	10622493	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	JAG1	NM_000214	exon22	c.2621delC	p.A874fs	.	.	188.0	13.0	187.0	0.0	.	213	.	.	Atlas-INDEL
RUFY1	80230	hgsc.bcm.edu	hg19	5	179023590	179023590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RUFY1	NM_025158	exon13	c.1538delA	p.Q513fs	.	.	182.0	11.0	101.0	0.0	.	101	.	.	Atlas-INDEL
TREM1	54210	hgsc.bcm.edu	hg19	6	41250470	41250470	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TREM1	NM_001242590	exon2	c.70delT	p.L24X	.	.	225.0	14.0	136.0	0.0	.	38	.	.	Atlas-INDEL
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48539132	48539132	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC12A1	NM_001184832	exon12	c.1478delG	p.G493fs	.	.	135.0	10.0	100.0	0.0	.	243	.	.	Atlas-INDEL
MOCOS	55034	hgsc.bcm.edu	hg19	18	33800091	33800091	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MOCOS	NM_017947	exon9	c.1870delG	p.V624fs	.	.	135.0	10.0	121.0	0.0	.	84	.	.	Atlas-INDEL
ZNF271	10778	hgsc.bcm.edu	hg19	18	32889977	32889977	+	RNA	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF271	.	.	.	.	.	.	127.0	10.0	106.0	0.0	.	16	.	.	Atlas-INDEL
MKI67IP	84365	hgsc.bcm.edu	hg19	2	122485457	122485457	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MKI67IP	NM_032390	exon7	c.726delG	p.L242fs	.	.	198.0	12.0	166.0	0.0	.	27	.	.	Atlas-INDEL
FILIP1	27145	hgsc.bcm.edu	hg19	6	76124598	76124598	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FILIP1	NM_015687	exon2	c.92delG	p.S31fs	.	.	192.0	13.0	133.0	0.0	.	173	.	.	Atlas-INDEL
BIRC2	329	hgsc.bcm.edu	hg19	11	102221110	102221110	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BIRC2	NM_001256163	exon2	c.524delA	p.N175fs	.	.	133.0	11.0	85.0	0.0	.	51	.	.	Atlas-INDEL
CHRNB4	1143	hgsc.bcm.edu	hg19	15	78921420	78921420	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHRNB4	NM_000750	exon5	c.1228delA	p.R410fs	.	.	138.0	10.0	130.0	0.0	.	59	.	.	Atlas-INDEL
AZI1	22994	hgsc.bcm.edu	hg19	17	79172711	79172711	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AZI1	NM_014984	exon11	c.1254delA	p.P418fs	.	.	130.0	10.0	78.0	0.0	.	145	.	.	Atlas-INDEL
RORA	6095	hgsc.bcm.edu	hg19	15	60803793	60803793	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RORA	NM_134260	exon6	c.552delG	p.K184fs	.	.	159.0	10.0	156.0	0.0	.	114	.	.	Atlas-INDEL
PPIL6	285755	hgsc.bcm.edu	hg19	6	109757309	109757309	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PPIL6	NM_001111298	exon2	c.230delG	p.R77fs	.	.	286.0	18.0	198.0	0.0	.	20	.	.	Atlas-INDEL
DCHS1	8642	hgsc.bcm.edu	hg19	11	6649903	6649903	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DCHS1	NM_003737	exon13	c.5321delC	p.A1774fs	.	.	161.0	10.0	107.0	0.0	.	277	.	.	Atlas-INDEL
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94692436	94692436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLXNC1	NM_005761	exon27	c.4102delC	p.L1368fs	.	.	165.0	11.0	120.0	0.0	.	135	.	.	Atlas-INDEL
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13602811	13602811	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_148894	exon10	c.5714delA	p.D1905fs	.	.	149.0	10.0	153.0	0.0	.	.	.	.	Atlas-INDEL
SH2D3A	10045	hgsc.bcm.edu	hg19	19	6755180	6755180	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SH2D3A	NM_005490	exon5	c.644delG	p.R215fs	.	.	168.0	11.0	127.0	0.0	.	53	.	.	Atlas-INDEL
N4BP2	55728	hgsc.bcm.edu	hg19	4	40123872	40123872	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	N4BP2	NM_018177	exon9	c.4140delA	p.L1380fs	.	.	248.0	16.0	197.0	0.0	.	166	.	.	Atlas-INDEL
KALRN	8997	hgsc.bcm.edu	hg19	3	124210240	124210240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KALRN	NM_003947	exon31	c.4651delA	p.T1551fs	.	.	151.0	10.0	68.0	0.0	.	556	.	.	Atlas-INDEL
TTLL11	158135	hgsc.bcm.edu	hg19	9	124736391	124736391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTLL11	NM_001139442	exon6	c.1649delT	p.V550fs	.	.	159.0	10.0	110.0	0.0	.	67	.	.	Atlas-INDEL
STT3B	201595	hgsc.bcm.edu	hg19	3	31674442	31674442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STT3B	NM_178862	exon15	c.2202delA	p.T734fs	.	.	174.0	11.0	133.0	0.0	.	52	.	.	Atlas-INDEL
CCDC110	256309	hgsc.bcm.edu	hg19	4	186382237	186382237	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC110	NM_152775	exon5	c.315delT	p.N105fs	.	.	154.0	12.0	139.0	0.0	.	78	.	.	Atlas-INDEL
OR5M11	219487	hgsc.bcm.edu	hg19	11	56310222	56310222	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR5M11	NM_001005245	exon1	c.513delT	p.S171fs	.	.	130.0	12.0	84.0	0.0	.	60	.	.	Atlas-INDEL
C1QTNF3	114899	hgsc.bcm.edu	hg19	5	34035781	34035781	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1QTNF3	NM_181435	exon2	c.387delT	p.P129fs	.	.	152.0	10.0	95.0	0.0	.	31	.	.	Atlas-INDEL
VPS13D	55187	hgsc.bcm.edu	hg19	1	12433904	12433904	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VPS13D	NM_015378	exon55	c.10907delT	p.L3636X	.	.	268.0	17.0	191.0	0.0	.	316	.	.	Atlas-INDEL
MGAT4C	25834	hgsc.bcm.edu	hg19	12	86383211	86383211	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MGAT4C	NM_013244	exon5	c.115delA	p.M39X	.	.	179.0	11.0	205.0	0.0	.	110	.	.	Atlas-INDEL
MATN3	4148	hgsc.bcm.edu	hg19	2	20202988	20202988	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MATN3	NM_002381	exon3	c.851delA	p.E284fs	.	.	137.0	10.0	144.0	0.0	.	28	.	.	Atlas-INDEL
CEP85L	387119	hgsc.bcm.edu	hg19	6	118803074	118803074	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CEP85L	NM_001178035	exon9	c.1623delT	p.N541fs	.	.	120.0	12.0	75.0	0.0	.	26	.	.	Atlas-Indel,Pindel
ZSCAN25	221785	hgsc.bcm.edu	hg19	7	99219096	99219096	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_145115	exon5	c.487delT	p.W163fs	.	.	159.0	10.0	120.0	0.0	.	.	.	.	Atlas-INDEL
DDX23	9416	hgsc.bcm.edu	hg19	12	49224336	49224336	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DDX23,NS,carcinoma,0,1	DDX23	NM_004818	exon17	c.2380delG	p.E794fs	.	.	262.0	18.0	203.0	0.0	.	82	.	.	Atlas-Indel,Pindel
C19orf12	83636	hgsc.bcm.edu	hg19	19	30193879	30193879	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C19orf12	NM_001031726	exon3	c.200delC	p.A67fs	.	.	195.0	16.0	188.0	0.0	.	16	.	.	Atlas-INDEL
SPATA31A4	642629	hgsc.bcm.edu	hg19	9	41321778	41321778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPATA31A4	NM_001242613	exon4	c.3569delC	p.S1190X	.	.	227.0	14.0	273.0	0.0	.	2	.	.	Atlas-INDEL
PIN4	5303	hgsc.bcm.edu	hg19	X	71401650	71401650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIN4	NM_001170747	exon1	c.89delG	p.G30fs	.	.	180.0	11.0	152.0	0.0	.	8	.	.	Atlas-INDEL
ANKRD50	57182	hgsc.bcm.edu	hg19	4	125591535	125591535	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD50	NM_020337	exon4	c.2898delA	p.L966fs	.	.	178.0	15.0	159.0	0.0	.	136	.	.	Atlas-INDEL
NCBP1	4686	hgsc.bcm.edu	hg19	9	100410326	100410326	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NCBP1	NM_002486	exon8	c.717delG	p.L239fs	.	.	146.0	11.0	167.0	0.0	.	64	.	.	Atlas-INDEL
ADD2	119	hgsc.bcm.edu	hg19	2	70890579	70890579	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ADD2	NM_001617	exon16	c.2160delG	p.K720fs	.	.	120.0	11.0	107.0	0.0	.	261	.	.	Atlas-INDEL
TRIM66	9866	hgsc.bcm.edu	hg19	11	8642705	8642705	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM66	NM_014818	exon15	c.2892delA	p.P964fs	.	.	207.0	13.0	118.0	0.0	.	45	.	.	Atlas-INDEL
MYOF	26509	hgsc.bcm.edu	hg19	10	95157188	95157188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYOF	NM_133337	exon14	c.1248delT	p.N416fs	.	.	156.0	10.0	126.0	0.0	.	177	.	.	Atlas-INDEL
SNX2	6643	hgsc.bcm.edu	hg19	5	122137589	122137589	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNX2	NM_003100	exon4	c.415delA	p.I139fs	.	.	316.0	19.0	154.0	0.0	.	42	.	.	Atlas-INDEL
SPRY1	10252	hgsc.bcm.edu	hg19	4	124323707	124323707	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPRY1	NM_001258038	exon3	c.960delA	p.X320C	.	.	168.0	13.0	148.0	0.0	.	28	.	.	Atlas-INDEL
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160806244	160806244	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2R1	NM_001195641	exon25	c.3585delC	p.F1195fs	.	.	135.0	10.0	129.0	0.0	.	153	.	.	Atlas-INDEL
NNT	23530	hgsc.bcm.edu	hg19	5	43644296	43644296	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NNT	NM_182977	exon8	c.966delT	p.G322fs	.	.	178.0	11.0	109.0	0.0	.	92	.	.	Atlas-INDEL
MLL5	55904	hgsc.bcm.edu	hg19	7	104715257	104715257	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL5	NM_182931	exon8	c.723delT	p.C241X	.	.	167.0	12.0	130.0	0.0	.	173	.	.	Atlas-INDEL
ZNF286B	729288	hgsc.bcm.edu	hg19	17	18566149	18566149	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF286B	NM_001145045	exon5	c.671delG	p.S224fs	.	.	220.0	14.0	233.0	0.0	.	75	.	.	Atlas-INDEL
ANTXR2	118429	hgsc.bcm.edu	hg19	4	80957125	80957125	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANTXR2	NM_058172	exon9	c.697+2G>-	.	.	.	213.0	13.0	159.0	0.0	.	97	.	.	Atlas-INDEL
CCDC170	80129	hgsc.bcm.edu	hg19	6	151907220	151907220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_025059	exon7	c.1288delC	p.Q430fs	.	.	145.0	12.0	73.0	0.0	.	.	.	.	Atlas-INDEL
DNAJC22	79962	hgsc.bcm.edu	hg19	12	49743396	49743396	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAJC22	NM_024902	exon2	c.740delT	p.M247fs	.	.	155.0	10.0	135.0	0.0	.	29	.	.	Atlas-INDEL
TPR	7175	hgsc.bcm.edu	hg19	1	186340145	186340145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon3	c.288delC	p.N96fs	.	.	174.0	11.0	125.0	0.0	.	441	.	.	Atlas-INDEL
PIEZO1	9780	hgsc.bcm.edu	hg19	16	88793481	88793481	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PIEZO1	NM_001142864	exon24	c.3422delA	p.E1141fs	.	.	158.0	10.0	136.0	0.0	.	79	.	.	Atlas-INDEL
CACNB4	785	hgsc.bcm.edu	hg19	2	152709963	152709963	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CACNB4_ENST00000539935,NS,carcinoma,0,2	CACNB4	NM_001145798	exon12	c.1116delA	p.P372fs	.	.	115.0	10.0	89.0	0.0	.	108	.	.	Atlas-INDEL
EYS	346007	hgsc.bcm.edu	hg19	6	64574091	64574091	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYS	NM_001142800	exon36	c.7217delT	p.L2406fs	.	.	184.0	12.0	97.0	0.0	.	527	.	.	Atlas-INDEL
KCNH5	27133	hgsc.bcm.edu	hg19	14	63174612	63174612	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KCNH5	NM_139318	exon11	c.2582delC	p.T861fs	.	.	183.0	14.0	193.0	0.0	.	320	.	.	Atlas-INDEL
BCAR1	9564	hgsc.bcm.edu	hg19	16	75269533	75269533	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAR1	NM_001170714	exon6	c.1403delC	p.A468fs	.	.	151.0	11.0	133.0	0.0	.	184	.	.	Atlas-INDEL
ERBB4	2066	hgsc.bcm.edu	hg19	2	212248737	212248737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ERBB4,NS,carcinoma,0,2	ERBB4	NM_005235	exon28	c.3531delT	p.N1177fs	.	.	113.0	11.0	108.0	0.0	.	480	.	.	Atlas-INDEL
SAMM50	25813	hgsc.bcm.edu	hg19	22	44379821	44379821	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SAMM50	NM_015380	exon12	c.1015delC	p.L339fs	.	.	160.0	10.0	134.0	0.0	.	30	.	.	Atlas-INDEL
MYH7	4625	hgsc.bcm.edu	hg19	14	23888507	23888507	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH7	NM_000257	exon30	c.3854-2C>-	.	.	.	126.0	10.0	84.0	0.0	.	349	.	.	Atlas-INDEL
CTAGE5	4253	hgsc.bcm.edu	hg19	14	39788448	39788448	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CTAGE5,colon,carcinoma,0,1	CTAGE5	NM_001247989	exon18	c.1510delG	p.E504fs	.	.	114.0	10.0	70.0	0.0	.	75	.	.	Atlas-INDEL
CTSA	5476	hgsc.bcm.edu	hg19	20	44521908	44521908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	CTSA,NS,carcinoma,0,1	CTSA	NM_000308	exon7	c.703delT	p.S235fs	.	.	155.0	10.0	157.0	0.0	.	52	.	.	Atlas-INDEL
GPR107	57720	hgsc.bcm.edu	hg19	9	132863470	132863470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR107	NM_001136557	exon12	c.1098delC	p.D366fs	.	.	190.0	12.0	184.0	0.0	.	30	.	.	Atlas-INDEL
CDH11	1009	hgsc.bcm.edu	hg19	16	64981570	64981570	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH11	NM_001797	exon13	c.2328delA	p.G776fs	.	.	153.0	13.0	178.0	0.0	.	260	.	.	Atlas-INDEL
CRTAC1	55118	hgsc.bcm.edu	hg19	10	99640100	99640100	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CRTAC1	NM_001206528	exon14	c.1726delG	p.V576fs	.	.	152.0	10.0	144.0	0.0	.	86	.	.	Atlas-INDEL
CHDH	55349	hgsc.bcm.edu	hg19	3	53852175	53852175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHDH	NM_018397	exon9	c.1415delT	p.I472fs	.	.	155.0	11.0	105.0	0.0	.	34	.	.	Atlas-INDEL
RPP14	11102	hgsc.bcm.edu	hg19	3	58296091	58296091	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPP14	NM_007042	exon2	c.34delG	p.V12fs	.	.	157.0	10.0	117.0	0.0	.	6	.	.	Atlas-INDEL
SENP6	26054	hgsc.bcm.edu	hg19	6	76331286	76331286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SENP6	NM_015571	exon2	c.90delT	p.F30fs	.	.	256.0	16.0	157.0	0.0	.	189	.	.	Atlas-INDEL
TTLL7	79739	hgsc.bcm.edu	hg19	1	84386998	84386998	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTLL7	NM_024686	exon11	c.1223delG	p.R408fs	.	.	189.0	12.0	91.0	0.0	.	93	.	.	Atlas-INDEL
CNOT3	4849	hgsc.bcm.edu	hg19	19	54647778	54647778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNOT3	NM_014516	exon6	c.294delC	p.T98fs	.	.	122.0	10.0	107.0	0.0	.	133	.	.	Atlas-INDEL
TMEM27	57393	hgsc.bcm.edu	hg19	X	15682878	15682878	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMEM27	NM_020665	exon1	c.22delC	p.L8fs	.	.	149.0	11.0	133.0	0.0	.	21	.	.	Atlas-INDEL
EYA4	2070	hgsc.bcm.edu	hg19	6	133783807	133783807	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EYA4	NM_172105	exon9	c.628delC	p.Q210fs	.	.	116.0	10.0	99.0	0.0	.	196	.	.	Atlas-INDEL
MIR1179	100302235	hgsc.bcm.edu	hg19	15	89151344	89151344	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	165.0	10.0	129.0	0.0	.	.	.	.	Atlas-INDEL
ACAD8	27034	hgsc.bcm.edu	hg19	11	134132519	134132519	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACAD8	NM_014384	exon10	c.1195+2A>-	.	.	.	127.0	10.0	58.0	0.0	.	33	.	.	Atlas-INDEL
EML6	400954	hgsc.bcm.edu	hg19	2	55189708	55189708	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EML6	NM_001039753	exon35	c.5017delG	p.E1673fs	.	.	128.0	14.0	106.0	0.0	.	85	.	.	Atlas-Indel,Pindel
AMPD3	272	hgsc.bcm.edu	hg19	11	10524339	10524339	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AMPD3	NM_000480	exon13	c.1940delG	p.S647fs	.	.	152.0	10.0	141.0	0.0	.	68	.	.	Atlas-INDEL
SOGA3	387104	hgsc.bcm.edu	hg19	6	127834044	127834044	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001012279	exon4	c.1478delT	p.M493fs	.	.	245.0	16.0	172.0	0.0	.	.	.	.	Atlas-INDEL
HK3	3101	hgsc.bcm.edu	hg19	5	176309024	176309024	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HK3	NM_002115	exon16	c.2159delA	p.D720fs	.	.	193.0	15.0	97.0	0.0	.	210	.	.	Atlas-INDEL
ACSM3	6296	hgsc.bcm.edu	hg19	16	20808252	20808252	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACSM3	NM_005622	exon14	c.1718delC	p.T573fs	.	.	205.0	13.0	209.0	0.0	.	113	.	.	Atlas-INDEL
TRH	7200	hgsc.bcm.edu	hg19	3	129695643	129695643	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRH	NM_007117	exon3	c.312delA	p.E104fs	.	.	142.0	10.0	70.0	0.0	.	30	.	.	Atlas-INDEL
STK25	10494	hgsc.bcm.edu	hg19	2	242440926	242440926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STK25	NM_001271977	exon3	c.229delT	p.Y77fs	.	.	119.0	10.0	98.0	0.0	.	32	.	.	Atlas-INDEL
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13601642	13601642	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_148894	exon10	c.6883delA	p.T2295fs	.	.	179.0	11.0	169.0	0.0	.	.	.	.	Atlas-INDEL
ARL3	403	hgsc.bcm.edu	hg19	10	104449670	104449670	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARL3	NM_004311	exon4	c.296delG	p.R99fs	.	.	157.0	10.0	147.0	0.0	.	13	.	.	Atlas-INDEL
TTC3	7267	hgsc.bcm.edu	hg19	21	38555184	38555184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC3	NM_001001894	exon36	c.4725delG	p.K1575fs	.	.	209.0	13.0	178.0	0.0	.	182	.	.	Atlas-INDEL
RBM12B	389677	hgsc.bcm.edu	hg19	8	94746023	94746023	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM12B	NM_203390	exon3	c.2617delA	p.R873fs	.	.	163.0	10.0	54.0	0.0	.	78	.	.	Atlas-INDEL
LRRFIP1	9208	hgsc.bcm.edu	hg19	2	238666189	238666189	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRFIP1	NM_001137550	exon17	c.1221delA	p.I407fs	.	.	240.0	16.0	248.0	0.0	.	171	.	.	Atlas-INDEL
ZCCHC9	84240	hgsc.bcm.edu	hg19	5	80608475	80608475	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCCHC9	NM_001131036	exon6	c.809delA	p.N270fs	.	.	212.0	13.0	105.0	0.0	.	26	.	.	Atlas-INDEL
MYO10	4651	hgsc.bcm.edu	hg19	5	16762178	16762178	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO10	NM_012334	exon16	c.1633delG	p.G545fs	.	.	192.0	13.0	101.0	0.0	.	198	.	.	Atlas-INDEL
CFL2	1073	hgsc.bcm.edu	hg19	14	35182277	35182277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CFL2	NM_021914	exon3	c.378delG	p.K126fs	.	.	195.0	12.0	146.0	0.0	.	22	.	.	Atlas-INDEL
PUS7L	83448	hgsc.bcm.edu	hg19	12	44124292	44124292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	PUS7L,colon,carcinoma,+1,1	PUS7L	NM_001098614	exon9	c.1994delC	p.T665fs	.	.	243.0	15.0	226.0	0.0	.	73	.	.	Atlas-INDEL
KRT20	54474	hgsc.bcm.edu	hg19	17	39041106	39041106	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRT20	NM_019010	exon1	c.333delG	p.P111fs	.	.	157.0	10.0	172.0	0.0	.	38	.	.	Atlas-INDEL
DDX60L	91351	hgsc.bcm.edu	hg19	4	169348237	169348237	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DDX60L	NM_001012967	exon14	c.1915delC	p.H639fs	.	.	135.0	10.0	153.0	0.0	.	116	.	.	Atlas-INDEL
PDE2A	5138	hgsc.bcm.edu	hg19	11	72342169	72342169	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PDE2A	NM_001243784	exon2	c.35delT	p.L12fs	.	.	149.0	10.0	122.0	0.0	.	156	.	.	Atlas-INDEL
MARK3	4140	hgsc.bcm.edu	hg19	14	103934485	103934485	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MARK3	NM_001128919	exon12	c.1225delG	p.V409fs	.	.	179.0	11.0	157.0	0.0	.	86	.	.	Atlas-INDEL
MTHFD1L	25902	hgsc.bcm.edu	hg19	6	151198808	151198808	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MTHFD1L	NM_001242767	exon3	c.350delA	p.N117fs	.	.	154.0	11.0	117.0	0.0	.	75	.	.	Atlas-INDEL
MYH7	4625	hgsc.bcm.edu	hg19	14	23894966	23894966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH7	NM_000257	exon20	c.2225delC	p.A742fs	.	.	164.0	11.0	118.0	0.0	.	349	.	.	Atlas-INDEL
CCDC67	159989	hgsc.bcm.edu	hg19	11	93104240	93104240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	CCDC67	NM_181645	exon7	c.582delT	p.G194fs	.	.	241.0	16.0	152.0	0.0	.	57	.	.	Atlas-INDEL
HINT3	135114	hgsc.bcm.edu	hg19	6	126278229	126278229	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HINT3	NM_138571	exon1	c.105delT	p.A35fs	.	.	184.0	12.0	111.0	0.0	.	14	.	.	Atlas-INDEL
SHPRH	257218	hgsc.bcm.edu	hg19	6	146254194	146254194	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SHPRH	NM_173082	exon14	c.3139delG	p.G1047fs	.	.	125.0	10.0	85.0	0.0	.	169	.	.	Atlas-INDEL
MRC1	4360	hgsc.bcm.edu	hg19	10	17917243	17917243	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRC1	NM_002438	exon17	c.2527delG	p.E843fs	.	.	175.0	11.0	138.0	0.0	.	13	.	.	Atlas-INDEL
SMARCD2	6603	hgsc.bcm.edu	hg19	17	61914354	61914354	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCD2	NM_001098426	exon4	c.496delG	p.E166fs	.	.	132.0	10.0	77.0	0.0	.	29	.	.	Atlas-INDEL
PTPN23	25930	hgsc.bcm.edu	hg19	3	47454399	47454399	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPN23	NM_015466	exon25	c.4634delC	p.P1545fs	.	.	328.0	22.0	182.0	0.0	.	85	.	.	Atlas-INDEL
SSX4B	548313	hgsc.bcm.edu	hg19	X	48244046	48244046	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SSX4B	NM_001034832	exon3	c.112delG	p.E38fs	.	.	319.0	20.0	308.0	0.0	.	9	.	.	Atlas-INDEL
CCDC7	221016	hgsc.bcm.edu	hg19	10	32832279	32832279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC7	NM_145023	exon13	c.1044delG	p.K348fs	.	.	230.0	17.0	126.0	0.0	.	47	.	.	Atlas-INDEL
ATF3	467	hgsc.bcm.edu	hg19	1	212788594	212788594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATF3	NM_001030287	exon2	c.230delC	p.T77fs	.	.	147.0	14.0	89.0	0.0	.	22	.	.	Atlas-INDEL
ACRC	93953	hgsc.bcm.edu	hg19	X	70800684	70800684	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACRC	NM_052957	exon2	c.12delC	p.C4X	.	.	238.0	17.0	215.0	0.0	.	110	.	.	Atlas-INDEL
TOP2B	7155	hgsc.bcm.edu	hg19	3	25679663	25679663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOP2B	NM_001068	exon5	c.520delG	p.V174fs	.	.	275.0	20.0	192.0	0.0	.	98	.	.	Atlas-INDEL
ZCWPW2	152098	hgsc.bcm.edu	hg19	3	28557110	28557110	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZCWPW2	NM_001040432	exon7	c.781delA	p.R261fs	.	.	200.0	12.0	126.0	0.0	.	49	.	.	Atlas-INDEL
FAM65B	9750	hgsc.bcm.edu	hg19	6	24806664	24806664	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM65B	NM_014722	exon23	c.3145delT	p.F1049fs	.	.	106.0	12.0	81.0	0.0	.	134	.	.	Atlas-INDEL
SDAD1	55153	hgsc.bcm.edu	hg19	4	76895289	76895289	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDAD1	NM_018115	exon8	c.579-2C>-	.	.	.	140.0	10.0	175.0	0.0	.	47	.	.	Atlas-INDEL
SLC35F3	148641	hgsc.bcm.edu	hg19	1	234041422	234041422	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC35F3	NM_173508	exon2	c.200delC	p.P67fs	.	.	159.0	11.0	90.0	0.0	.	81	.	.	Atlas-INDEL
TTC37	9652	hgsc.bcm.edu	hg19	5	94856440	94856440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTC37	NM_014639	exon20	c.2095delG	p.A699fs	.	.	237.0	16.0	113.0	0.0	.	128	.	.	Atlas-INDEL
APOBEC3B	9582	hgsc.bcm.edu	hg19	22	39381926	39381926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	APOBEC3B	NM_004900	exon3	c.283delA	p.T95fs	.	.	127.0	10.0	126.0	0.0	.	32	.	.	Atlas-INDEL
IFNL3	282617	hgsc.bcm.edu	hg19	19	39734707	39734707	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_172139	exon3	c.350delA	p.D117fs	.	.	161.0	10.0	108.0	0.0	.	.	.	.	Atlas-INDEL
RBM33	155435	hgsc.bcm.edu	hg19	7	155511123	155511123	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM33	NM_053043	exon9	c.1245delA	p.G415fs	.	.	166.0	10.0	129.0	0.0	.	157	.	.	Atlas-INDEL
ZHX2	22882	hgsc.bcm.edu	hg19	8	123965336	123965336	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZHX2	NM_014943	exon3	c.1585delG	p.A529fs	.	.	257.0	18.0	69.0	0.0	.	106	.	.	Atlas-INDEL
AHDC1	27245	hgsc.bcm.edu	hg19	1	27876439	27876439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHDC1	NM_001029882	exon6	c.2189delA	p.E730fs	.	.	348.0	22.0	195.0	0.0	.	98	.	.	Atlas-INDEL
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72432766	72432766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SLC4A4_ENST00000425175,NS,carcinoma,0,1	SLC4A4	NM_001134742	exon24	c.3144delT	p.D1048fs	.	.	100.0	10.0	124.0	0.0	.	269	.	.	Atlas-INDEL
VIPR1	7433	hgsc.bcm.edu	hg19	3	42573788	42573788	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	VIPR1	NM_004624	exon10	c.972delG	p.R324fs	.	.	215.0	14.0	135.0	0.0	.	45	.	.	Atlas-INDEL
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128640085	128640085	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMARCA1	NM_139035	exon8	c.1071delA	p.L357fs	.	.	142.0	11.0	128.0	0.0	.	126	.	.	Atlas-INDEL
C14orf93	60686	hgsc.bcm.edu	hg19	14	23457145	23457145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C14orf93	NM_021944	exon6	c.1165delG	p.E389fs	.	.	148.0	11.0	115.0	0.0	.	33	.	.	Atlas-INDEL
SEC62	7095	hgsc.bcm.edu	hg19	3	169700648	169700648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	SEC62	NM_003262	exon4	c.404delC	p.T135fs	.	.	126.0	10.0	68.0	0.0	.	27	.	.	Atlas-INDEL
SEC24A	10802	hgsc.bcm.edu	hg19	5	134059335	134059335	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEC24A	NM_021982	exon22	c.3141delA	p.P1047fs	.	.	177.0	11.0	99.0	0.0	.	77	.	.	Atlas-INDEL
MLL5	55904	hgsc.bcm.edu	hg19	7	104745930	104745930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL5	NM_182931	exon18	c.2240delG	p.G747fs	.	.	120.0	10.0	66.0	0.0	.	173	.	.	Atlas-INDEL
FAM151A	338094	hgsc.bcm.edu	hg19	1	55078303	55078303	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM151A	NM_176782	exon5	c.657delA	p.P219fs	.	.	156.0	10.0	101.0	0.0	.	58	.	.	Atlas-INDEL
MYO15A	51168	hgsc.bcm.edu	hg19	17	18077149	18077149	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYO15A	NM_016239	exon64	c.10404delG	p.R3468fs	.	.	228.0	14.0	214.0	0.0	.	268	.	.	Atlas-INDEL
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35835675	35835675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZMYM4	NM_005095	exon6	c.885delG	p.L295fs	.	.	161.0	12.0	102.0	0.0	.	143	.	.	Atlas-INDEL
CLK4	57396	hgsc.bcm.edu	hg19	5	178032333	178032333	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CLK4	NM_020666	exon11	c.1186delA	p.I396fs	.	.	214.0	13.0	120.0	0.0	.	103	.	.	Atlas-INDEL
FAT2	2196	hgsc.bcm.edu	hg19	5	150924388	150924388	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAT2	NM_001447	exon9	c.6301delA	p.T2101fs	.	.	208.0	14.0	110.0	0.0	.	465	.	.	Atlas-INDEL
SOS1	6654	hgsc.bcm.edu	hg19	2	39262585	39262585	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOS1	NM_005633	exon7	c.922delC	p.H308fs	.	.	165.0	11.0	177.0	0.0	.	134	.	.	Atlas-INDEL
SYTL3	94120	hgsc.bcm.edu	hg19	6	159103969	159103969	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYTL3	NM_001009991	exon7	c.341delT	p.I114fs	.	.	176.0	14.0	154.0	0.0	.	49	.	.	Atlas-INDEL
SPEG	10290	hgsc.bcm.edu	hg19	2	220354172	220354172	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SPEG	NM_005876	exon36	c.8431delG	p.A2811fs	.	.	205.0	13.0	154.0	0.0	.	272	.	.	Atlas-INDEL
TRUB1	142940	hgsc.bcm.edu	hg19	10	116698055	116698055	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRUB1	NM_139169	exon1	c.42delG	p.L14fs	.	.	186.0	14.0	175.0	0.0	.	30	.	.	Atlas-INDEL
CPSF6	11052	hgsc.bcm.edu	hg19	12	69650513	69650513	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPSF6	NM_007007	exon4	c.410delC	p.S137X	.	.	194.0	13.0	178.0	0.0	.	96	.	.	Atlas-INDEL
IMMP1L	196294	hgsc.bcm.edu	hg19	11	31477911	31477911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IMMP1L	NM_144981	exon5	c.218delG	p.S73fs	.	.	161.0	12.0	133.0	0.0	.	16	.	.	Atlas-INDEL
NR4A2	4929	hgsc.bcm.edu	hg19	2	157186374	157186374	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,2	NR4A2	NM_006186	exon3	c.326delA	p.Q109fs	.	.	172.0	11.0	143.0	0.0	.	82	.	.	Atlas-INDEL
KRT7	3855	hgsc.bcm.edu	hg19	12	52639299	52639299	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KRT7	NM_005556	exon7	c.1087delC	p.R363fs	.	.	127.0	13.0	106.0	0.0	.	48	.	.	Atlas-INDEL
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184040193	184040193	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EIF4G1	NM_001194947	exon11	c.1583delT	p.L528fs	.	.	183.0	16.0	114.0	0.0	.	151	.	.	Atlas-INDEL
SLC1A4	6509	hgsc.bcm.edu	hg19	2	65237733	65237733	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC1A4	NM_003038	exon4	c.635delT	p.I212fs	.	.	164.0	10.0	161.0	0.0	.	33	.	.	Atlas-INDEL
XPOT	11260	hgsc.bcm.edu	hg19	12	64827209	64827209	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPOT	NM_007235	exon19	c.2277delG	p.P759fs	.	.	138.0	12.0	128.0	0.0	.	105	.	.	Atlas-INDEL
URGCP	55665	hgsc.bcm.edu	hg19	7	43916637	43916637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	URGCP	NM_001077663	exon6	c.2426delC	p.T809fs	.	.	196.0	12.0	103.0	0.0	.	170	.	.	Atlas-INDEL
TSPAN19	144448	hgsc.bcm.edu	hg19	12	85411267	85411267	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TSPAN19	NM_001100917	exon7	c.563delG	p.C188fs	.	.	139.0	11.0	123.0	0.0	.	23	.	.	Atlas-INDEL
GPN3	51184	hgsc.bcm.edu	hg19	12	110895351	110895351	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPN3	NM_001164372	exon4	c.532delC	p.L178fs	.	.	194.0	13.0	129.0	0.0	.	37	.	.	Atlas-INDEL
TAF1B	9014	hgsc.bcm.edu	hg19	2	9994472	9994472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TAF1B	NM_005680	exon5	c.320delA	p.N107fs	.	.	163.0	10.0	151.0	0.0	.	62	.	.	Atlas-INDEL
PCNXL4	64430	hgsc.bcm.edu	hg19	14	60592492	60592492	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_022495	exon9	c.2515delA	p.I839fs	.	.	115.0	10.0	98.0	0.0	.	.	.	.	Atlas-INDEL
IFT80	57560	hgsc.bcm.edu	hg19	3	160037585	160037585	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IFT80	NM_020800	exon9	c.921delT	p.N307fs	.	.	162.0	10.0	127.0	0.0	.	68	.	.	Atlas-INDEL
SYNE2	23224	hgsc.bcm.edu	hg19	14	64593150	64593150	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SYNE2	NM_182914	exon72	c.13659delG	p.M4553fs	.	.	201.0	13.0	165.0	0.0	.	577	.	.	Atlas-INDEL
EFHB	151651	hgsc.bcm.edu	hg19	3	19924173	19924173	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	EFHB_ENST00000295824,NS,carcinoma,0,4	EFHB	NM_144715	exon12	c.2198delG	p.R733fs	.	.	144.0	10.0	91.0	0.0	.	186	.	.	Atlas-INDEL
L3MBTL3	84456	hgsc.bcm.edu	hg19	6	130425608	130425608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L3MBTL3	NM_032438	exon19	c.1773delT	p.N591fs	.	.	194.0	13.0	156.0	0.0	.	99	.	.	Atlas-INDEL
UBE3D	90025	hgsc.bcm.edu	hg19	6	83733743	83733743	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_198920	exon6	c.683delA	p.Y228fs	.	.	215.0	15.0	147.0	0.0	.	.	.	.	Atlas-INDEL
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150131502	150131502	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLEKHO1	NM_016274	exon6	c.1013delA	p.D338fs	.	.	233.0	16.0	126.0	0.0	.	37	.	.	Atlas-INDEL
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19725327	19725327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TMPRSS15	NM_002772	exon10	c.1065delC	p.F355fs	.	.	176.0	11.0	176.0	0.0	.	189	.	.	Atlas-INDEL
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266867	41266867	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CTNNB1	NM_001098210	exon5	c.537delT	p.S179fs	.	.	182.0	12.0	122.0	0.0	.	4904	.	.	Atlas-INDEL
MYH11	4629	hgsc.bcm.edu	hg19	16	15876271	15876271	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH11	NM_001040114	exon7	c.719delC	p.T240fs	.	.	142.0	11.0	146.0	0.0	.	520	.	.	Atlas-INDEL
STT3B	201595	hgsc.bcm.edu	hg19	3	31656646	31656646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STT3B	NM_178862	exon6	c.926delC	p.P309fs	.	.	155.0	12.0	130.0	0.0	.	52	.	.	Atlas-INDEL
SLC9A6	10479	hgsc.bcm.edu	hg19	X	135080706	135080706	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC9A6	NM_001042537	exon4	c.668delG	p.C223fs	.	.	154.0	11.0	138.0	0.0	.	64	.	.	Atlas-INDEL
TTF2	8458	hgsc.bcm.edu	hg19	1	117618310	117618310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TTF2	NM_003594	exon5	c.1103delG	p.S368fs	.	.	382.0	23.0	191.0	0.0	.	92	.	.	Atlas-INDEL
SLCO1B1	10599	hgsc.bcm.edu	hg19	12	21375253	21375253	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLCO1B1	NM_006446	exon13	c.1701delG	p.L567fs	.	.	140.0	10.0	165.0	0.0	.	151	.	.	Atlas-INDEL
SLC37A1	54020	hgsc.bcm.edu	hg19	21	43945906	43945906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLC37A1	NM_018964	exon4	c.76delA	p.I26fs	.	.	161.0	11.0	169.0	0.0	.	48	.	.	Atlas-INDEL
CUEDC1	404093	hgsc.bcm.edu	hg19	17	55945607	55945607	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CUEDC1	NM_001271875	exon9	c.941-2C>-	.	.	.	145.0	10.0	117.0	0.0	.	37	.	.	Atlas-INDEL
FIGNL1	63979	hgsc.bcm.edu	hg19	7	50514614	50514614	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FIGNL1	NM_022116	exon4	c.373delT	p.F125fs	.	.	157.0	10.0	102.0	0.0	.	73	.	.	Atlas-Indel,Pindel
ANKLE2	23141	hgsc.bcm.edu	hg19	12	133312071	133312071	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKLE2	NM_015114	exon9	c.1622delC	p.T541fs	.	.	178.0	11.0	118.0	0.0	.	76	.	.	Atlas-INDEL
PHF20	51230	hgsc.bcm.edu	hg19	20	34526859	34526859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PHF20	NM_016436	exon16	c.2540delA	p.Y847fs	.	.	128.0	10.0	101.0	0.0	.	94	.	.	Atlas-INDEL
CSNK1A1	1452	hgsc.bcm.edu	hg19	5	148889476	148889476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSNK1A1	NM_001025105	exon8	c.801delG	p.K267fs	.	.	225.0	15.0	73.0	0.0	.	63	.	.	Atlas-INDEL
STT3B	201595	hgsc.bcm.edu	hg19	3	31665200	31665200	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	STT3B	NM_178862	exon11	c.1573delG	p.E525fs	.	.	156.0	10.0	133.0	0.0	.	52	.	.	Atlas-INDEL
NOVA2	4858	hgsc.bcm.edu	hg19	19	46464290	46464290	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NOVA2	NM_002516	exon2	c.208delA	p.K70fs	.	.	128.0	10.0	116.0	0.0	.	38	.	.	Atlas-INDEL
TULP1	7287	hgsc.bcm.edu	hg19	6	35473878	35473878	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TULP1	NM_003322	exon10	c.902delA	p.Q301fs	.	.	83.0	11.0	36.0	0.0	.	51	.	.	Atlas-INDEL
HAPLN1	1404	hgsc.bcm.edu	hg19	5	82948593	82948593	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HAPLN1	NM_001884	exon3	c.152delC	p.S51fs	.	.	162.0	10.0	77.0	0.0	.	79	.	.	Atlas-INDEL
MLL	4297	hgsc.bcm.edu	hg19	11	118347674	118347674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL	NM_001197104	exon4	c.3310delA	p.I1104fs	.	.	161.0	10.0	157.0	0.0	.	548	.	.	Atlas-INDEL
SEC24C	9632	hgsc.bcm.edu	hg19	10	75525560	75525560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	SEC24C	NM_004922	exon11	c.1368delT	p.V456fs	.	.	173.0	12.0	184.0	0.0	.	86	.	.	Atlas-INDEL
HECTD4	283450	hgsc.bcm.edu	hg19	12	112630422	112630422	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	C12orf51_ENST00000377560,NS,carcinoma,0,2	.	NM_001109662	exon59	c.8833delA	p.T2945fs	.	.	152.0	11.0	70.0	0.0	.	.	.	.	Atlas-INDEL
RBBP8	5932	hgsc.bcm.edu	hg19	18	20573135	20573135	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBBP8	NM_203292	exon11	c.1344delG	p.K448fs	.	.	136.0	10.0	150.0	0.0	.	138	.	.	Atlas-INDEL
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27317833	27317833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD26	NM_014915	exon27	c.3921delG	p.K1307fs	.	.	240.0	16.0	218.0	0.0	.	179	.	.	Atlas-INDEL
EDA2R	60401	hgsc.bcm.edu	hg19	X	65822591	65822591	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EDA2R	NM_001242310	exon4	c.402delT	p.P134fs	.	.	155.0	12.0	109.0	0.0	.	30	.	.	Atlas-INDEL
MUCL1	118430	hgsc.bcm.edu	hg19	12	55251994	55251994	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUCL1	NM_058173	exon4	c.240delT	p.V80fs	.	.	196.0	12.0	179.0	0.0	.	11	.	.	Atlas-INDEL
SMCR8	140775	hgsc.bcm.edu	hg19	17	18221365	18221365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMCR8	NM_144775	exon1	c.2261delT	p.V754fs	.	.	147.0	12.0	113.0	0.0	.	62	.	.	Atlas-INDEL
PYROXD1	79912	hgsc.bcm.edu	hg19	12	21605042	21605042	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PYROXD1	NM_024854	exon5	c.441delT	p.A147fs	.	.	156.0	11.0	230.0	0.0	.	38	.	.	Atlas-INDEL
TRIM46	80128	hgsc.bcm.edu	hg19	1	155156381	155156381	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM46	NM_025058	exon10	c.1994delC	p.S665fs	.	.	133.0	11.0	78.0	0.0	.	79	.	.	Atlas-INDEL
NCKAP1	10787	hgsc.bcm.edu	hg19	2	183822266	183822266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NCKAP1	NM_205842	exon20	c.1959delG	p.K653fs	.	.	152.0	10.0	162.0	0.0	.	105	.	.	Atlas-INDEL
LIMK1	3984	hgsc.bcm.edu	hg19	7	73521482	73521482	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	LIMK1,NS,carcinoma,0,1	LIMK1	NM_002314	exon8	c.1023delC	p.H341fs	.	.	169.0	11.0	151.0	0.0	.	55	.	.	Atlas-INDEL
WDR17	116966	hgsc.bcm.edu	hg19	4	177093632	177093632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR17	NM_170710	exon26	c.3325delG	p.E1109fs	.	.	195.0	15.0	204.0	0.0	.	198	.	.	Atlas-INDEL
PRICKLE2	166336	hgsc.bcm.edu	hg19	3	64085551	64085551	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRICKLE2	NM_198859	exon8	c.1712delC	p.S571fs	.	.	137.0	10.0	99.0	0.0	.	88	.	.	Atlas-INDEL
FHOD3	80206	hgsc.bcm.edu	hg19	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FHOD3	NM_025135	exon10	c.999delA	p.P333fs	.	.	144.0	10.0	105.0	0.0	.	210	.	.	Atlas-INDEL
DNAH7	56171	hgsc.bcm.edu	hg19	2	196753679	196753679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH7	NM_018897	exon32	c.5074delG	p.D1692fs	.	.	264.0	16.0	228.0	0.0	.	512	.	.	Atlas-INDEL
C1orf64	149563	hgsc.bcm.edu	hg19	1	16332618	16332618	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C1orf64	NM_178840	exon2	c.286delA	p.T96fs	.	.	148.0	10.0	104.0	0.0	.	16	.	.	Atlas-INDEL
ZNF271	10778	hgsc.bcm.edu	hg19	18	32889109	32889109	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF271	.	.	.	.	.	.	179.0	11.0	175.0	0.0	.	16	.	.	Atlas-INDEL
ABCE1	6059	hgsc.bcm.edu	hg19	4	146033436	146033436	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCE1	NM_002940	exon9	c.755delG	p.R252fs	.	.	152.0	12.0	139.0	0.0	.	47	.	.	Atlas-INDEL
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79318977	79318977	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRUNE2	NM_015225	exon9	c.7553delC	p.T2518fs	.	.	170.0	11.0	127.0	0.0	.	331	.	.	Atlas-INDEL
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118728182	118728182	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA1598	NM_001127211	exon3	c.154delC	p.L52fs	.	.	150.0	10.0	123.0	0.0	.	74	.	.	Atlas-INDEL
ERAL1	26284	hgsc.bcm.edu	hg19	17	27182148	27182148	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ERAL1,NS,carcinoma,0,1	ERAL1	NM_005702	exon1	c.95delC	p.P32fs	.	.	175.0	11.0	115.0	0.0	.	28	.	.	Atlas-INDEL
ELP3	55140	hgsc.bcm.edu	hg19	8	27995291	27995291	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ELP3	NM_018091	exon10	c.982delC	p.L328fs	.	.	111.0	10.0	153.0	0.0	.	36	.	.	Atlas-INDEL
DNAH12	201625	hgsc.bcm.edu	hg19	3	57399487	57399487	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DNAH12	NM_178504	exon39	c.5950delG	p.D1984fs	.	.	270.0	20.0	192.0	0.0	.	182	.	.	Atlas-INDEL
GDAP1L1	78997	hgsc.bcm.edu	hg19	20	42907863	42907863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	GDAP1L1,colon,carcinoma,0,1	GDAP1L1	NM_001256737	exon6	c.1083delC	p.F361fs	.	.	164.0	10.0	162.0	0.0	.	36	.	.	Atlas-INDEL
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79465566	79465566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRUNE2	NM_015225	exon3	c.158delT	p.V53fs	.	.	153.0	10.0	148.0	0.0	.	331	.	.	Atlas-INDEL
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34832378	34832378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KIAA0355	NM_014686	exon10	c.1538delA	p.D513fs	.	.	178.0	12.0	152.0	0.0	.	105	.	.	Atlas-INDEL
USP9X	8239	hgsc.bcm.edu	hg19	X	41069767	41069767	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP9X	NM_001039591	exon33	c.5020delT	p.W1674fs	.	.	148.0	11.0	145.0	0.0	.	385	.	.	Atlas-INDEL
WDR64	128025	hgsc.bcm.edu	hg19	1	241875143	241875143	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	WDR64	NM_144625	exon8	c.983delC	p.T328fs	.	.	194.0	15.0	92.0	0.0	.	234	.	.	Atlas-INDEL
SNRPN	6638	hgsc.bcm.edu	hg19	15	25221497	25221497	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNRPN	NM_022807	exon9	c.200delT	p.L67fs	.	.	128.0	10.0	86.0	0.0	.	58	.	.	Atlas-INDEL
SLFN12L	100506736	hgsc.bcm.edu	hg19	17	33806378	33806378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLFN12L	NM_001195790	exon2	c.852delT	p.N284fs	.	.	157.0	10.0	140.0	0.0	.	140	.	.	Atlas-INDEL
SNAPC1	6617	hgsc.bcm.edu	hg19	14	62245598	62245598	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SNAPC1	NM_003082	exon7	c.794delT	p.I265fs	.	.	186.0	12.0	152.0	0.0	.	32	.	.	Atlas-INDEL
C11orf30	56946	hgsc.bcm.edu	hg19	11	76257129	76257129	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C11orf30	NM_020193	exon20	c.3561delA	p.L1187fs	.	.	178.0	11.0	139.0	0.0	.	123	.	.	Atlas-INDEL
OBSCN	84033	hgsc.bcm.edu	hg19	1	228430955	228430955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OBSCN	NM_001271223	exon11	c.3276delC	p.A1092fs	.	.	216.0	13.0	112.0	0.0	.	2142	.	.	Atlas-INDEL
RBM43	375287	hgsc.bcm.edu	hg19	2	152107917	152107917	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RBM43	NM_198557	exon4	c.578delA	p.Q193fs	.	.	231.0	14.0	226.0	0.0	.	35	.	.	Atlas-INDEL
ATP2A2	488	hgsc.bcm.edu	hg19	12	110720572	110720572	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATP2A2	NM_001681	exon3	c.190delA	p.I64fs	.	.	156.0	11.0	104.0	0.0	.	78	.	.	Atlas-INDEL
KAT6A	7994	hgsc.bcm.edu	hg19	8	41832291	41832291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_006766	exon8	c.1414delG	p.G472fs	.	.	182.0	12.0	215.0	0.0	.	.	.	.	Atlas-INDEL
BPTF	2186	hgsc.bcm.edu	hg19	17	65955903	65955903	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BPTF	NM_182641	exon24	c.8172delG	p.K2724fs	.	.	178.0	12.0	112.0	0.0	.	415	.	.	Atlas-INDEL
MED13	9969	hgsc.bcm.edu	hg19	17	60087940	60087940	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MED13	NM_005121	exon9	c.1939delG	p.G647fs	.	.	170.0	12.0	119.0	0.0	.	181	.	.	Atlas-INDEL
ACCSL	390110	hgsc.bcm.edu	hg19	11	44077622	44077622	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACCSL	NM_001031854	exon10	c.1171delT	p.W391fs	.	.	188.0	12.0	97.0	0.0	.	57	.	.	Atlas-INDEL
ASH1L	55870	hgsc.bcm.edu	hg19	1	155307895	155307895	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ASH1L	NM_018489	exon27	c.8789delT	p.I2930fs	.	.	165.0	10.0	102.0	0.0	.	279	.	.	Atlas-INDEL
DGKZ	8525	hgsc.bcm.edu	hg19	11	46394213	46394213	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DGKZ	NM_001105540	exon13	c.1620delC	p.C540fs	.	.	132.0	10.0	51.0	0.0	.	199	.	.	Atlas-INDEL
GATA1	2623	hgsc.bcm.edu	hg19	X	48650547	48650547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GATA1	NM_002049	exon3	c.516delC	p.F172fs	.	.	142.0	11.0	116.0	0.0	.	342	.	.	Atlas-INDEL
HMP19	0	hgsc.bcm.edu	hg19	5	173473819	173473819	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMP19	NM_015980	exon2	c.60delT	p.D20fs	.	.	161.0	10.0	98.0	0.0	.	21	.	.	Atlas-INDEL
ZNF184	7738	hgsc.bcm.edu	hg19	6	27420023	27420023	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF184	NM_007149	exon6	c.1316delC	p.T439fs	.	.	130.0	10.0	87.0	0.0	.	89	.	.	Atlas-INDEL
RANBP3L	202151	hgsc.bcm.edu	hg19	5	36270074	36270074	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RANBP3L	NM_001161429	exon3	c.170delT	p.L57fs	.	.	172.0	11.0	116.0	0.0	.	41	.	.	Atlas-INDEL
SYNE2	23224	hgsc.bcm.edu	hg19	14	64556329	64556329	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SYNE2,NS,carcinoma,0,1	SYNE2	NM_182914	exon59	c.11707delG	p.E3903fs	.	.	211.0	13.0	185.0	0.0	.	577	.	.	Atlas-INDEL
PI4K2A	55361	hgsc.bcm.edu	hg19	10	99426199	99426199	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PI4K2A	NM_018425	exon7	c.1088delC	p.P363fs	.	.	139.0	10.0	119.0	0.0	.	57	.	.	Atlas-INDEL
XPO5	57510	hgsc.bcm.edu	hg19	6	43496599	43496599	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XPO5	NM_020750	exon24	c.2743delA	p.I915fs	.	.	156.0	11.0	106.0	0.0	.	79	.	.	Atlas-INDEL
MB21D2	151963	hgsc.bcm.edu	hg19	3	192516280	192516280	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MB21D2	NM_178496	exon2	c.1372delC	p.L458fs	.	.	197.0	14.0	147.0	0.0	.	75	.	.	Atlas-INDEL
HSPG2	3339	hgsc.bcm.edu	hg19	1	22168836	22168836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HSPG2	NM_005529	exon68	c.8949delT	p.P2983fs	.	.	174.0	11.0	113.0	0.0	.	311	.	.	Atlas-INDEL
OR52B6	340980	hgsc.bcm.edu	hg19	11	5602546	5602546	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR52B6	NM_001005162	exon1	c.439delT	p.S147fs	.	.	157.0	11.0	102.0	0.0	.	37	.	.	Atlas-INDEL
NT5DC2	64943	hgsc.bcm.edu	hg19	3	52562508	52562508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NT5DC2	NM_001134231	exon5	c.597delT	p.G199fs	.	.	406.0	26.0	250.0	0.0	.	35	.	.	Atlas-INDEL
HLF	3131	hgsc.bcm.edu	hg19	17	53345191	53345191	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HLF	NM_002126	exon2	c.194delT	p.L65fs	.	.	145.0	10.0	96.0	0.0	.	39	.	.	Atlas-INDEL
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56393388	56393388	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BZRAP1	NM_004758	exon16	c.2095delG	p.E699fs	.	.	260.0	19.0	174.0	0.0	.	287	.	.	Atlas-INDEL
MCM9	254394	hgsc.bcm.edu	hg19	6	119238756	119238756	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MCM9	NM_017696	exon4	c.875delG	p.W292fs	.	.	202.0	13.0	103.0	0.0	.	73	.	.	Atlas-INDEL
BUB1	699	hgsc.bcm.edu	hg19	2	111430402	111430402	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BUB1	NM_004336	exon4	c.259delG	p.E87fs	.	.	123.0	10.0	124.0	0.0	.	91	.	.	Atlas-INDEL
FMN1	342184	hgsc.bcm.edu	hg19	15	33069072	33069072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	FMN1_ENST00000334528,brain,glioma,0,2	FMN1	NM_001103184	exon16	c.3511delG	p.V1171fs	.	.	142.0	10.0	150.0	0.0	.	174	.	.	Atlas-INDEL
ZNF80	7634	hgsc.bcm.edu	hg19	3	113955740	113955740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF80	NM_007136	exon1	c.183delC	p.N61fs	.	.	136.0	11.0	84.0	0.0	.	75	.	.	Atlas-INDEL
LRBA	987	hgsc.bcm.edu	hg19	4	151829842	151829842	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRBA	NM_006726	exon10	c.1330delG	p.V444fs	.	.	147.0	10.0	144.0	0.0	.	253	.	.	Atlas-INDEL
EZH1	2145	hgsc.bcm.edu	hg19	17	40860046	40860046	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EZH1	NM_001991	exon15	c.1591delT	p.C531fs	.	.	161.0	10.0	98.0	0.0	.	62	.	.	Atlas-INDEL
ITGB4	3691	hgsc.bcm.edu	hg19	17	73746239	73746239	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITGB4	NM_001005619	exon27	c.3363delA	p.P1121fs	.	.	171.0	11.0	148.0	0.0	.	165	.	.	Atlas-INDEL
TGM3	7053	hgsc.bcm.edu	hg19	20	2291043	2291043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TGM3	NM_003245	exon3	c.400delC	p.L134fs	.	.	162.0	10.0	119.0	0.0	.	105	.	.	Atlas-INDEL
MRGPRG	386746	hgsc.bcm.edu	hg19	11	3239346	3239346	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MRGPRG	NM_001164377	exon1	c.699delG	p.P233fs	.	.	221.0	14.0	93.0	0.0	.	6	.	.	Atlas-INDEL
BCAS1	8537	hgsc.bcm.edu	hg19	20	52645367	52645367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BCAS1	NM_003657	exon4	c.288delC	p.F96fs	.	.	140.0	10.0	118.0	0.0	.	77	.	.	Atlas-INDEL
CNEP1R1	255919	hgsc.bcm.edu	hg19	16	50067341	50067341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_153261	exon5	c.255delA	p.P85fs	.	.	173.0	11.0	148.0	0.0	.	.	.	.	Atlas-INDEL
EMR2	30817	hgsc.bcm.edu	hg19	19	14884853	14884853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EMR2	NM_001271052	exon3	c.97delT	p.C33fs	.	.	178.0	12.0	144.0	0.0	.	99	.	.	Atlas-INDEL
ZNF318	24149	hgsc.bcm.edu	hg19	6	43320194	43320194	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF318	NM_014345	exon5	c.2692delC	p.L898X	.	.	182.0	13.0	118.0	0.0	.	175	.	.	Atlas-INDEL
SALL2	6297	hgsc.bcm.edu	hg19	14	21991715	21991715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SALL2	NM_005407	exon2	c.2148delC	p.G716fs	.	.	115.0	11.0	86.0	0.0	.	95	.	.	Atlas-INDEL
PSRC1	84722	hgsc.bcm.edu	hg19	1	109824582	109824582	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSRC1	NM_001032291	exon4	c.179delA	p.Q60fs	.	.	165.0	11.0	74.0	0.0	.	12	.	.	Atlas-INDEL
TANC2	26115	hgsc.bcm.edu	hg19	17	61086972	61086972	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TANC2	NM_025185	exon1	c.51delT	p.R17fs	.	.	161.0	10.0	111.0	0.0	.	266	.	.	Atlas-INDEL
ZBTB11	27107	hgsc.bcm.edu	hg19	3	101371772	101371772	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZBTB11	NM_014415	exon9	c.2321delG	p.S774fs	.	.	189.0	12.0	115.0	0.0	.	77	.	.	Atlas-INDEL
IGDCC3	9543	hgsc.bcm.edu	hg19	15	65623433	65623433	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IGDCC3	NM_004884	exon9	c.1517delC	p.A506fs	.	.	168.0	15.0	151.0	0.0	.	82	.	.	Atlas-INDEL
SUPT20HL2	170067	hgsc.bcm.edu	hg19	X	24329517	24329517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_001136233	exon1	c.1917delC	p.F639fs	.	.	210.0	13.0	144.0	0.0	.	.	.	.	Atlas-INDEL
GPR97	222487	hgsc.bcm.edu	hg19	16	57707239	57707239	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GPR97	NM_170776	exon2	c.64delG	p.E22fs	.	.	165.0	11.0	168.0	0.0	.	74	.	.	Atlas-INDEL
MYH8	4626	hgsc.bcm.edu	hg19	17	10318665	10318665	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH8	NM_002472	exon8	c.686delT	p.L229fs	.	.	130.0	10.0	166.0	0.0	.	346	.	.	Atlas-INDEL
DCDC2	51473	hgsc.bcm.edu	hg19	6	24278359	24278359	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	DCDC2,colon,carcinoma,0,1	DCDC2	NM_001195610	exon8	c.841delG	p.E281fs	.	.	230.0	16.0	148.0	0.0	.	53	.	.	Atlas-INDEL
PTPRS	5802	hgsc.bcm.edu	hg19	19	5231449	5231449	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTPRS	NM_002850	exon14	c.2028delG	p.P676fs	.	.	102.0	10.0	89.0	0.0	.	169	.	.	Atlas-INDEL
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83374999	83374999	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPS6KA6	NM_014496	exon9	c.684delG	p.K228fs	.	.	166.0	10.0	165.0	0.0	.	116	.	.	Atlas-INDEL
POLDIP3	84271	hgsc.bcm.edu	hg19	22	42981894	42981894	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POLDIP3	NM_032311	exon9	c.1170delT	p.P390fs	.	.	121.0	10.0	130.0	0.0	.	58	.	.	Atlas-INDEL
FAM117B	150864	hgsc.bcm.edu	hg19	2	203621969	203621969	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FAM117B	NM_173511	exon6	c.1137delA	p.P379fs	.	.	295.0	19.0	222.0	0.0	.	73	.	.	Atlas-INDEL
GDI2	2665	hgsc.bcm.edu	hg19	10	5836890	5836890	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	GDI2	NM_001494	exon4	c.347delT	p.I116fs	.	.	160.0	10.0	173.0	0.0	.	26	.	.	Atlas-INDEL
SMC4	10051	hgsc.bcm.edu	hg19	3	160131299	160131299	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMC4	NM_005496	exon7	c.1018delC	p.Q340fs	.	.	183.0	13.0	109.0	0.0	.	135	.	.	Atlas-INDEL
TRAF3IP1	26146	hgsc.bcm.edu	hg19	2	239237915	239237915	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	TRAF3IP1,right_upper_lobe,carcinoma,0,1	TRAF3IP1	NM_015650	exon5	c.846delG	p.V282fs	.	.	152.0	12.0	100.0	0.0	.	58	.	.	Atlas-INDEL
SDCBP2	27111	hgsc.bcm.edu	hg19	20	1291473	1291473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SDCBP2	NM_080489	exon8	c.796delA	p.S266fs	.	.	193.0	12.0	195.0	0.0	.	78	.	.	Atlas-INDEL
TRIM32	22954	hgsc.bcm.edu	hg19	9	119461528	119461528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRIM32	NM_012210	exon2	c.1506delA	p.S502fs	.	.	171.0	11.0	161.0	0.0	.	67	.	.	Atlas-INDEL
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9257212	9257212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD12	NM_015208	exon9	c.3946delA	p.I1316fs	.	.	134.0	10.0	142.0	0.0	.	167	.	.	Atlas-INDEL
MMP19	4327	hgsc.bcm.edu	hg19	12	56233389	56233389	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MMP19	NM_002429	exon5	c.658delC	p.L220fs	.	.	180.0	12.0	184.0	0.0	.	61	.	.	Atlas-INDEL
LRRFIP2	9209	hgsc.bcm.edu	hg19	3	37149563	37149563	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRFIP2	NM_006309	exon15	c.714+2G>-	.	.	.	154.0	10.0	110.0	0.0	.	71	.	.	Atlas-INDEL
FIG4	9896	hgsc.bcm.edu	hg19	6	110098164	110098164	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FIG4	NM_014845	exon16	c.1789delG	p.V597fs	.	.	200.0	12.0	155.0	0.0	.	77	.	.	Atlas-INDEL
SORCS2	57537	hgsc.bcm.edu	hg19	4	7716932	7716932	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SORCS2	NM_020777	exon17	c.2145delC	p.S715fs	.	.	150.0	11.0	153.0	0.0	.	98	.	.	Atlas-INDEL
SUCO	51430	hgsc.bcm.edu	hg19	1	172571330	172571330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	NM_014283	exon21	c.3144delT	p.P1048fs	.	.	159.0	12.0	84.0	0.0	.	.	.	.	Atlas-INDEL
POMT1	10585	hgsc.bcm.edu	hg19	9	134390827	134390827	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	POMT1	NM_007171	exon13	c.1255delG	p.A419fs	.	.	156.0	11.0	137.0	0.0	.	59	.	.	Atlas-INDEL
CSDE1	7812	hgsc.bcm.edu	hg19	1	115272999	115272999	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CSDE1	NM_001242891	exon13	c.1375delC	p.L459fs	.	.	116.0	10.0	72.0	0.0	.	145	.	.	Atlas-INDEL
PARP14	54625	hgsc.bcm.edu	hg19	3	122423544	122423544	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PARP14	NM_017554	exon8	c.3488delC	p.T1163fs	.	.	225.0	14.0	204.0	0.0	.	242	.	.	Atlas-INDEL
ACAN	176	hgsc.bcm.edu	hg19	15	89400592	89400592	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ACAN	NM_001135	exon12	c.4775delG	p.G1592fs	.	.	165.0	10.0	115.0	0.0	.	220	.	.	Atlas-INDEL
IQCB1	9657	hgsc.bcm.edu	hg19	3	121527845	121527845	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	IQCB1,NS,carcinoma,0,1	IQCB1	NM_001023571	exon6	c.406delG	p.D136fs	.	.	221.0	14.0	181.0	0.0	.	50	.	.	Atlas-INDEL
HSPA2	3306	hgsc.bcm.edu	hg19	14	65008143	65008143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	HSPA2,NS,carcinoma,0,1	HSPA2	NM_021979	exon1	c.575delC	p.A192fs	.	.	162.0	10.0	133.0	0.0	.	83	.	.	Atlas-INDEL
AKAP9	10142	hgsc.bcm.edu	hg19	7	91726097	91726097	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	AKAP9_ENST00000356239,NS,carcinoma,0,2	AKAP9	NM_005751	exon41	c.9823delC	p.Q3275fs	.	.	152.0	10.0	104.0	0.0	.	788	.	.	Atlas-INDEL
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79732785	79732785	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	ZFYVE16,colon,carcinoma,0,1	ZFYVE16	NM_001105251	exon4	c.280delG	p.E94fs	.	.	263.0	16.0	125.0	0.0	.	100	.	.	Atlas-Indel,Pindel
PSRC1	84722	hgsc.bcm.edu	hg19	1	109823047	109823047	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PSRC1	NM_001032291	exon7	c.970delA	p.R324fs	.	.	159.0	13.0	87.0	0.0	.	12	.	.	Atlas-INDEL
ERAP2	64167	hgsc.bcm.edu	hg19	5	96232481	96232481	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ERAP2	NM_001130140	exon9	c.1416delG	p.E472fs	.	.	171.0	11.0	119.0	0.0	.	77	.	.	Atlas-INDEL
SEL1L2	80343	hgsc.bcm.edu	hg19	20	13899678	13899678	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEL1L2	NM_001271539	exon4	c.376delC	p.Q126fs	.	.	144.0	11.0	138.0	0.0	.	103	.	.	Atlas-INDEL
MUC4	4585	hgsc.bcm.edu	hg19	3	195511523	195511523	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MUC4	NM_018406	exon2	c.6929delC	p.A2310fs	.	.	127.0	11.0	66.0	0.0	.	1505	.	.	Atlas-INDEL
PCMTD1	115294	hgsc.bcm.edu	hg19	8	52773460	52773460	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCMTD1	NM_052937	exon2	c.253delC	p.L85fs	.	.	202.0	15.0	93.0	0.0	.	73	.	.	Atlas-INDEL
MYH14	79784	hgsc.bcm.edu	hg19	19	50812903	50812903	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MYH14	NM_001145809	exon43	c.5966delG	p.G1989fs	.	.	141.0	10.0	154.0	0.0	.	261	.	.	Atlas-INDEL
SWT1	54823	hgsc.bcm.edu	hg19	1	185175808	185175808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SWT1	NM_017673	exon13	c.1884delT	p.F628fs	.	.	176.0	11.0	109.0	0.0	.	88	.	.	Atlas-INDEL
CHD2	1106	hgsc.bcm.edu	hg19	15	93540530	93540530	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CHD2	NM_001271	exon30	c.3781delT	p.W1261fs	.	.	161.0	11.0	159.0	0.0	.	280	.	.	Atlas-INDEL
FZD6	8323	hgsc.bcm.edu	hg19	8	104330820	104330820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FZD6	NM_003506	exon3	c.179delA	p.H60fs	.	.	299.0	18.0	98.0	0.0	.	61	.	.	Atlas-INDEL
R3HDML	140902	hgsc.bcm.edu	hg19	20	42979399	42979399	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	R3HDML	NM_178491	exon5	c.728delA	p.K243fs	.	.	245.0	16.0	227.0	0.0	.	33	.	.	Atlas-INDEL
PLOD2	5352	hgsc.bcm.edu	hg19	3	145804616	145804616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLOD2	NM_182943	exon10	c.1086delA	p.P362fs	.	.	159.0	10.0	114.0	0.0	.	81	.	.	Atlas-INDEL
RALA	5898	hgsc.bcm.edu	hg19	7	39745787	39745787	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RALA	NM_005402	exon5	c.563delG	p.G188fs	.	.	330.0	23.0	228.0	0.0	.	39	.	.	Atlas-INDEL
PCYT1A	5130	hgsc.bcm.edu	hg19	3	195968954	195968954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PCYT1A	NM_005017	exon8	c.574delG	p.A192fs	.	.	132.0	10.0	82.0	0.0	.	34	.	.	Atlas-INDEL
XRCC5	7520	hgsc.bcm.edu	hg19	2	217057430	217057430	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	XRCC5	NM_021141	exon18	c.2012delT	p.L671X	.	.	280.0	21.0	205.0	0.0	.	64	.	.	Atlas-INDEL
SMG1	23049	hgsc.bcm.edu	hg19	16	18841357	18841357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SMG1	NM_015092	exon53	c.9025delG	p.D3009fs	.	.	157.0	11.0	123.0	0.0	.	401	.	.	Atlas-INDEL
PAFAH1B2	5049	hgsc.bcm.edu	hg19	11	117038299	117038299	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PAFAH1B2	NM_002572	exon6	c.573delG	p.M191fs	.	.	171.0	11.0	123.0	0.0	.	19	.	.	Atlas-INDEL
USP37	57695	hgsc.bcm.edu	hg19	2	219350428	219350428	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP37	NM_020935	exon16	c.1630delA	p.K544fs	.	.	179.0	11.0	160.0	0.0	.	76	.	.	Atlas-INDEL
USP21	27005	hgsc.bcm.edu	hg19	1	161134345	161134345	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	USP21	NM_001014443	exon11	c.1326delG	p.Q442fs	.	.	236.0	15.0	157.0	0.0	.	63	.	.	Atlas-INDEL
HMGN4	10473	hgsc.bcm.edu	hg19	6	26545644	26545644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMGN4	NM_006353	exon2	c.209delC	p.A70fs	.	.	154.0	10.0	114.0	0.0	.	4	.	.	Atlas-INDEL
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94670628	94670628	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ARHGAP29	NM_004815	exon7	c.687delG	p.K229fs	.	.	232.0	16.0	153.0	0.0	.	132	.	.	Atlas-INDEL
ABCC9	10060	hgsc.bcm.edu	hg19	12	22001144	22001144	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ABCC9	NM_005691	exon23	c.2807delC	p.T936fs	.	.	187.0	12.0	328.0	0.0	.	411	.	.	Atlas-INDEL
ZNF205	7755	hgsc.bcm.edu	hg19	16	3163480	3163480	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ZNF205	NM_003456	exon2	c.48delA	p.T16fs	.	.	162.0	10.0	119.0	0.0	.	42	.	.	Atlas-INDEL
C9orf156	51531	hgsc.bcm.edu	hg19	9	100672401	100672401	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C9orf156	NM_016481	exon4	c.908delC	p.A303fs	.	.	181.0	12.0	141.0	0.0	.	35	.	.	Atlas-INDEL
CPSF6	11052	hgsc.bcm.edu	hg19	12	69652587	69652587	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CPSF6	NM_007007	exon6	c.911delG	p.G304fs	.	.	133.0	11.0	79.0	0.0	.	96	.	.	Atlas-INDEL
L3MBTL2	83746	hgsc.bcm.edu	hg19	22	41620044	41620044	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	L3MBTL2	NM_031488	exon9	c.962delA	p.Y321fs	.	.	197.0	12.0	150.0	0.0	.	61	.	.	Atlas-INDEL
RPE65	6121	hgsc.bcm.edu	hg19	1	68910348	68910348	+	Frame_Shift_Del	DEL	A	A	-	rs121918844		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	RPE65	NM_000329	exon5	c.362delC	p.S121fs	.	.	169.0	13.0	80.0	0.0	.	87	.	.	Atlas-INDEL
FANCM	57697	hgsc.bcm.edu	hg19	14	45645902	45645902	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FANCM	NM_020937	exon14	c.3944delC	p.A1315fs	.	.	172.0	12.0	183.0	0.0	.	225	.	.	Atlas-INDEL
EHMT2	10919	hgsc.bcm.edu	hg19	6	31864543	31864543	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	EHMT2	NM_025256	exon3	c.169delG	p.D57fs	.	.	161.0	10.0	97.0	0.0	.	45	.	.	Atlas-INDEL
CCDC69	26112	hgsc.bcm.edu	hg19	5	150563972	150563972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC69	NM_015621	exon8	c.647delT	p.I216fs	.	.	231.0	14.0	139.0	0.0	.	30	.	.	Atlas-INDEL
MOB2	81532	hgsc.bcm.edu	hg19	11	1492622	1492622	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MOB2	NM_001172223	exon4	c.394delA	p.K132fs	.	.	177.0	12.0	132.0	0.0	.	23	.	.	Atlas-INDEL
ITIH4	3700	hgsc.bcm.edu	hg19	3	52860860	52860860	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ITIH4	NM_002218	exon4	c.467delT	p.V156fs	.	.	196.0	12.0	143.0	0.0	.	74	.	.	Atlas-INDEL
TOR1B	27348	hgsc.bcm.edu	hg19	9	132571650	132571650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TOR1B	NM_014506	exon5	c.798delC	p.D266fs	.	.	177.0	17.0	146.0	0.0	.	20	.	.	Atlas-INDEL
TPR	7175	hgsc.bcm.edu	hg19	1	186324639	186324639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TPR	NM_003292	exon17	c.2075delT	p.I692fs	.	.	196.0	12.0	87.0	0.0	.	441	.	.	Atlas-INDEL
OR7A17	26333	hgsc.bcm.edu	hg19	19	14991635	14991635	+	Frame_Shift_Del	DEL	A	A	-	rs35659165		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	OR7A17	NM_030901	exon1	c.534delC	p.F178fs	.	.	155.0	10.0	127.0	0.0	.	37	.	.	Atlas-INDEL
HEATR6	63897	hgsc.bcm.edu	hg19	17	58124746	58124746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HEATR6	NM_022070	exon18	c.2694delC	p.F898fs	.	.	210.0	13.0	151.0	0.0	.	98	.	.	Atlas-INDEL
LRRC16A	55604	hgsc.bcm.edu	hg19	6	25619801	25619801	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRRC16A	NM_017640	exon37	c.4105delA	p.I1369fs	.	.	149.0	11.0	116.0	0.0	.	168	.	.	Atlas-INDEL
KHDRBS2	202559	hgsc.bcm.edu	hg19	6	62688078	62688078	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KHDRBS2	NM_152688	exon4	c.377delA	p.H126fs	.	.	163.0	10.0	144.0	0.0	.	103	.	.	Atlas-INDEL
SOBP	55084	hgsc.bcm.edu	hg19	6	107956410	107956410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOBP	NM_018013	exon6	c.2361delC	p.A787fs	.	.	137.0	10.0	108.0	0.0	.	53	.	.	Atlas-INDEL
CAPN11	11131	hgsc.bcm.edu	hg19	6	44145022	44145022	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CAPN11	NM_007058	exon12	c.1280delA	p.E427fs	.	.	174.0	11.0	121.0	0.0	.	66	.	.	Atlas-INDEL
MYO7A	4647	hgsc.bcm.edu	hg19	11	76867058	76867058	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	MYO7A	NM_001127179	exon5	c.390delG	p.M130fs	.	.	139.0	11.0	92.0	0.0	.	164	.	.	Atlas-INDEL
AHNAK	79026	hgsc.bcm.edu	hg19	11	62288216	62288216	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AHNAK	NM_001620	exon5	c.13674delT	p.P4558fs	.	.	202.0	13.0	126.0	0.0	.	532	.	.	Atlas-INDEL
PLA2G2F	64600	hgsc.bcm.edu	hg19	1	20465957	20465957	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLA2G2F	NM_022819	exon1	c.36delC	p.F12fs	.	.	146.0	10.0	87.0	0.0	.	28	.	.	Atlas-INDEL
PTGR1	22949	hgsc.bcm.edu	hg19	9	114355220	114355220	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PTGR1	NM_001146108	exon4	c.196delC	p.Q66fs	.	.	153.0	10.0	118.0	0.0	.	23	.	.	Atlas-INDEL
SOX2	6657	hgsc.bcm.edu	hg19	3	181431499	181431499	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SOX2	.	.	.	.	.	.	146.0	10.0	117.0	0.0	.	28	.	.	Atlas-INDEL
FGA	2243	hgsc.bcm.edu	hg19	4	155507905	155507905	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FGA	NM_000508	exon5	c.677delT	p.M226fs	.	.	154.0	13.0	147.0	0.0	.	179	.	.	Atlas-INDEL
SCN1A	6323	hgsc.bcm.edu	hg19	2	166852565	166852565	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	SCN1A_ENST00000303395,caecum,carcinoma,0,2	SCN1A	NM_001165963	exon24	c.4540delT	p.L1514X	.	.	148.0	10.0	142.0	0.0	.	641	.	.	Atlas-INDEL
IMPG2	50939	hgsc.bcm.edu	hg19	3	101023118	101023118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IMPG2	NM_016247	exon3	c.374delG	p.W125fs	.	.	151.0	11.0	134.0	0.0	.	164	.	.	Atlas-INDEL
BRAT1	221927	hgsc.bcm.edu	hg19	7	2583461	2583461	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	BRAT1	NM_152743	exon5	c.567delT	p.G189fs	.	.	163.0	10.0	116.0	0.0	.	57	.	.	Atlas-INDEL
LEPROT	54741	hgsc.bcm.edu	hg19	1	65897552	65897552	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LEPROT	NM_001198681	exon5	c.372delG	p.G124fs	.	.	205.0	13.0	110.0	0.0	.	16	.	.	Atlas-INDEL
FLYWCH1	84256	hgsc.bcm.edu	hg19	16	2979748	2979748	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FLYWCH1	NM_020912	exon3	c.61delT	p.S21fs	.	.	142.0	12.0	128.0	0.0	.	27	.	.	Atlas-INDEL
CCDC17	149483	hgsc.bcm.edu	hg19	1	46088658	46088658	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC17	NM_001114938	exon4	c.626delC	p.A209fs	.	.	188.0	13.0	97.0	0.0	.	54	.	.	Atlas-INDEL
DOCK11	139818	hgsc.bcm.edu	hg19	X	117749649	117749649	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DOCK11	NM_144658	exon30	c.3266delC	p.A1089fs	.	.	200.0	13.0	162.0	0.0	.	185	.	.	Atlas-INDEL
CCDC83	220047	hgsc.bcm.edu	hg19	11	85622356	85622356	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CCDC83	NM_173556	exon8	c.704delT	p.L235X	.	.	182.0	11.0	133.0	0.0	.	48	.	.	Atlas-INDEL
LCA5	167691	hgsc.bcm.edu	hg19	6	80197095	80197095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LCA5	NM_001122769	exon8	c.1721delG	p.S574fs	.	.	159.0	10.0	109.0	0.0	.	71	.	.	Atlas-INDEL
IQSEC1	9922	hgsc.bcm.edu	hg19	3	12942773	12942773	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IQSEC1	NM_001134382	exon15	c.3055delC	p.L1019fs	.	.	183.0	11.0	133.0	0.0	.	88	.	.	Atlas-INDEL
DHX8	1659	hgsc.bcm.edu	hg19	17	41582118	41582118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DHX8	NM_004941	exon12	c.1652delG	p.G551fs	.	.	117.0	10.0	82.0	0.0	.	98	.	.	Atlas-INDEL
LRCH3	84859	hgsc.bcm.edu	hg19	3	197566229	197566229	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	LRCH3	NM_032773	exon10	c.1288delC	p.Q430fs	.	.	155.0	11.0	96.0	0.0	.	96	.	.	Atlas-INDEL
AEBP2	121536	hgsc.bcm.edu	hg19	12	19667647	19667647	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	AEBP2	NM_001114176	exon7	c.1409delT	p.L470X	.	.	163.0	10.0	194.0	0.0	.	21	.	.	Atlas-INDEL
MARVELD3	91862	hgsc.bcm.edu	hg19	16	71674880	71674880	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MARVELD3	NM_001017967	exon3	c.1182delG	p.Q394fs	.	.	201.0	13.0	190.0	0.0	.	63	.	.	Atlas-INDEL
CDH10	1008	hgsc.bcm.edu	hg19	5	24487952	24487952	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDH10	NM_006727	exon12	c.2188delT	p.Y730fs	.	.	132.0	10.0	80.0	0.0	.	391	.	.	Atlas-INDEL
PRDX2	7001	hgsc.bcm.edu	hg19	19	12911076	12911076	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PRDX2	NM_005809	exon4	c.296delG	p.R99fs	.	.	227.0	15.0	251.0	0.0	.	20	.	.	Atlas-INDEL
SEMG2	6407	hgsc.bcm.edu	hg19	20	43851552	43851552	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SEMG2	NM_003008	exon2	c.1278delG	p.Q426fs	.	.	158.0	10.0	107.0	0.0	.	92	.	.	Atlas-INDEL
NPY1R	4886	hgsc.bcm.edu	hg19	4	164246487	164246487	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NPY1R	NM_000909	exon3	c.1124delT	p.I375fs	.	.	191.0	12.0	204.0	0.0	.	72	.	.	Atlas-INDEL
PLK4	10733	hgsc.bcm.edu	hg19	4	128814719	128814719	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PLK4	NM_014264	exon12	c.2373delG	p.R791fs	.	.	169.0	13.0	126.0	0.0	.	65	.	.	Atlas-INDEL
CNIH2	254263	hgsc.bcm.edu	hg19	11	66050215	66050215	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CNIH2	NM_182553	exon3	c.161delT	p.L54X	.	.	176.0	11.0	107.0	0.0	.	15	.	.	Atlas-INDEL
CDHR4	389118	hgsc.bcm.edu	hg19	3	49830724	49830724	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDHR4	NM_001007540	exon13	c.1645delG	p.E549fs	.	.	107.0	10.0	52.0	0.0	.	37	.	.	Atlas-INDEL
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140967163	140967163	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MAGEC3	NM_138702	exon3	c.460delC	p.L154fs	.	.	193.0	12.0	175.0	0.0	.	228	.	.	Atlas-INDEL
MLL4	8085	hgsc.bcm.edu	hg19	19	36223328	36223328	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MLL4	NM_014727	exon28	c.5877delT	p.A1959fs	.	.	166.0	10.0	160.0	0.0	.	229	.	.	Atlas-INDEL
PARPBP	55010	hgsc.bcm.edu	hg19	12	102589882	102589882	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PARPBP	NM_017915	exon11	c.1552delG	p.E518fs	.	.	210.0	14.0	138.0	0.0	.	40	.	.	Atlas-INDEL
NT5DC1	221294	hgsc.bcm.edu	hg19	6	116565118	116565118	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	NT5DC1	NM_152729	exon12	c.1298delC	p.S433X	.	.	255.0	17.0	191.0	0.0	.	32	.	.	Atlas-INDEL
ATF7IP2	80063	hgsc.bcm.edu	hg19	16	10551340	10551340	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ATF7IP2	NM_024997	exon7	c.1305delT	p.S435fs	.	.	139.0	10.0	140.0	0.0	.	40	.	.	Atlas-INDEL
KDM2B	84678	hgsc.bcm.edu	hg19	12	122018773	122018773	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	KDM2B	NM_032590	exon1	c.45delA	p.P15fs	.	.	224.0	14.0	172.0	0.0	.	218	.	.	Atlas-INDEL
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9279634	9279634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ANKRD12	NM_015208	exon12	c.5994delC	p.D1998fs	.	.	216.0	14.0	173.0	0.0	.	167	.	.	Atlas-INDEL
HMGCS2	3158	hgsc.bcm.edu	hg19	1	120301762	120301762	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	HMGCS2	NM_005518	exon4	c.830delT	p.I277fs	.	.	197.0	13.0	140.0	0.0	.	58	.	.	Atlas-Indel,Pindel
IL9R	3581	hgsc.bcm.edu	hg19	X	155239775	155239775	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	IL9R	NM_002186	exon9	c.1266delT	p.A422fs	.	.	157.0	10.0	114.0	0.0	.	73	.	.	Atlas-INDEL
DGKA	1606	hgsc.bcm.edu	hg19	12	56346858	56346858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DGKA	NM_201554	exon22	c.1976delT	p.L659fs	.	.	149.0	10.0	180.0	0.0	.	70	.	.	Atlas-INDEL
TRAF3	7187	hgsc.bcm.edu	hg19	14	103371834	103371834	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	TRAF3	NM_145725	exon12	c.1419delG	p.L473fs	.	.	177.0	11.0	154.0	0.0	.	60	.	.	Atlas-INDEL
KIAA1715	80856	hgsc.bcm.edu	hg19	2	176804341	176804341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	KIAA1715,caecum,carcinoma,-1,1	KIAA1715	NM_030650	exon10	c.752delG	p.R251fs	.	.	200.0	12.0	184.0	0.0	.	61	.	.	Atlas-INDEL
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117306420	117306420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	DSCAML1	NM_020693	exon27	c.4997delT	p.V1666fs	.	.	144.0	10.0	86.0	0.0	.	286	.	.	Atlas-INDEL
CD163L1	283316	hgsc.bcm.edu	hg19	12	7527201	7527201	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CD163L1	NM_174941	exon13	c.3247delT	p.F1083fs	.	.	163.0	10.0	218.0	0.0	.	238	.	.	Atlas-INDEL
MMP17	4326	hgsc.bcm.edu	hg19	12	132335715	132335715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	MMP17	NM_016155	exon10	c.1707delT	p.S569fs	.	.	152.0	10.0	81.0	0.0	.	77	.	.	Atlas-INDEL
SGCE	8910	hgsc.bcm.edu	hg19	7	94232644	94232644	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SGCE	NM_001099401	exon6	c.784delT	p.F262fs	.	.	166.0	12.0	142.0	0.0	.	68	.	.	Atlas-INDEL
PAPD5	64282	hgsc.bcm.edu	hg19	16	50257145	50257145	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	PAPD5	NM_001040284	exon8	c.1182delA	p.E394fs	.	.	163.0	11.0	147.0	0.0	.	57	.	.	Atlas-INDEL
FERMT2	10979	hgsc.bcm.edu	hg19	14	53326414	53326414	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	FERMT2	NM_001135000	exon15	c.1768delG	p.E590fs	.	.	269.0	18.0	229.0	0.0	.	59	.	.	Atlas-INDEL
SLFN13	146857	hgsc.bcm.edu	hg19	17	33772591	33772591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	SLFN13	NM_144682	exon3	c.110delC	p.T37fs	.	.	174.0	11.0	188.0	0.0	.	79	.	.	Atlas-INDEL
TENM3	55714	hgsc.bcm.edu	hg19	4	183713573	183713573	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	.	NM_001080477	exon25	c.5747delA	p.N1916fs	.	.	175.0	11.0	139.0	0.0	.	.	.	.	Atlas-INDEL
HLA-G	3135	hgsc.bcm.edu	hg19	6	29797196	29797196	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.,1	HLA-G	NM_002127	exon5	c.620delA	p.D207fs	.	.	227.0	10.0	150.0	0.0	.	90	.	.	Pindel
PIPSL	266971	hgsc.bcm.edu	hg19	10	95720426	95720426	+	RNA	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	.	.	.	.	.	.	.	224.0	10.0	195.0	0.0	.	.	.	.	Pindel
C7orf61	402573	hgsc.bcm.edu	hg19	7	100061288	100061288	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	C7orf61	NM_001004323	exon2	c.86delT	p.I29fs	.	.	243.0	11.0	167.0	0.0	.	12	.	.	Pindel
ESYT1	23344	hgsc.bcm.edu	hg19	12	56531342	56531342	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	ESYT1	NM_001184796	exon18	c.2027delT	p.L676fs	.	.	141.0	10.0	100.0	0.0	.	84	.	.	Pindel
CDC42	998	hgsc.bcm.edu	hg19	1	22413358	22413358	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A39Y-01A-11D-A20W-10	TCGA-DD-A39Y-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1f8cf411-5c5e-428b-b586-681ff7341d19	913c971b-4d3d-445d-92b6-feda7a575e32	.	CDC42	NM_001039802	exon6	c.484delC	p.Q162fs	.	.	97.0	22.0	47.0	0.0	.	26	.	.	Pindel
