Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
LRRC47	57470	hgsc.bcm.edu	hg19	1	3703707	3703707	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRRC47	NM_020710	exon2	c.A783G	p.G261G	ACGGCCTCCGACG	.	70.0	4.0	192.0	0.0	.	42	.	.	Atlas-SNP
PRAMEF4	400735	hgsc.bcm.edu	hg19	1	12942173	12942173	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PRAMEF4,NS,carcinoma,0,1	PRAMEF4	NM_001009611	exon3	c.G377C	p.C126S	AGGAAGCACCCAT	.	20.0	4.0	38.0	1.0	.	62	.	C|0.500;G|0.500	Atlas-SNP
DDOST	1650	hgsc.bcm.edu	hg19	1	20982026	20982026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DDOST	NM_005216	exon5	c.A509G	p.H170R	AGCGTATGCTGCA	.	92.0	4.0	135.0	0.0	.	30	.	.	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	hg19	1	26663170	26663170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AIM1L	NM_001039775	exon12	c.A3965G	p.K1322R	ACGCCCTTCTCCA	.	70.0	4.0	141.0	0.0	.	98	.	.	Atlas-SNP
RPA2	6118	hgsc.bcm.edu	hg19	1	28233497	28233497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RPA2	NM_002946	exon4	c.A275G	p.Y92C	ATTTTGTAAACAA	.	69.0	4.0	127.0	0.0	.	34	.	.	Atlas-SNP
DLGAP3	58512	hgsc.bcm.edu	hg19	1	35334624	35334624	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DLGAP3	NM_001080418	exon7	c.C2067T	p.G689G	TGCCAGGCCCTCC	.	64.0	25.0	96.0	0.0	.	107	.	.	Atlas-SNP
OSCP1	127700	hgsc.bcm.edu	hg19	1	36889022	36889022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSCP1	NM_145047	exon5	c.T562C	p.F188L	ACACAAAGCGACC	.	57.0	5.0	91.0	0.0	.	48	.	.	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40656478	40656478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RLF	NM_012421	exon3	c.A427G	p.S143G	TCTGAAAGTGAAC	.	91.0	4.0	155.0	0.0	.	152	.	.	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40705106	40705106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RLF	NM_012421	exon8	c.A4732G	p.S1578G	ATGAGTAGTGCCT	.	42.0	13.0	110.0	0.0	.	152	.	.	Atlas-SNP
ZFP69	339559	hgsc.bcm.edu	hg19	1	40961639	40961639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_198494	exon6	c.T1489C	p.C497R	TACGAATGTAACG	.	90.0	7.0	105.0	0.0	.	.	.	.	Atlas-SNP
WDR65	149465	hgsc.bcm.edu	hg19	1	43652435	43652435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDR65	NM_152498	exon6	c.T1027C	p.C343R	GTTCTCTGCCTGT	.	86.0	4.0	145.0	0.0	.	76	.	.	Atlas-SNP
ATPAF1	64756	hgsc.bcm.edu	hg19	1	47118264	47118264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATPAF1	NM_001042546	exon6	c.T646C	p.S216P	GACAGGACTGAGC	.	81.0	4.0	148.0	0.0	.	19	.	.	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52705075	52705075	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZFYVE9	NM_007323	exon4	c.T1986C	p.L662L	ATGCCTTGCATTA	.	90.0	4.0	137.0	0.0	.	131	.	.	Atlas-SNP
MRPL37	51253	hgsc.bcm.edu	hg19	1	54681856	54681856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	MRPL37,caecum,carcinoma,0,1	MRPL37	NM_016491	exon6	c.G1033A	p.V345M	CAGAGCGTGGGCA	.	170.0	7.0	361.0	0.0	.	36	.	.	Atlas-SNP
CTH	1491	hgsc.bcm.edu	hg19	1	70881689	70881689	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTH	NM_153742	exon2	c.A219G	p.K73K	TGAAAAAGCAGTG	.	71.0	4.0	115.0	0.0	.	48	.	.	Atlas-SNP
LRRC8C	84230	hgsc.bcm.edu	hg19	1	90180439	90180439	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRRC8C	NM_032270	exon3	c.A2310G	p.E770E	TCCTGAACTGGGT	.	89.0	4.0	118.0	0.0	.	73	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94497407	94497407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA4	NM_000350	exon27	c.T4055C	p.L1352P	TGCTGGAGGACCA	.	128.0	7.0	180.0	0.0	.	275	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94502755	94502755	+	Silent	SNP	C	C	A	rs147884766	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ABCA4,left_upper_lobe,carcinoma,0,1	ABCA4	NM_000350	exon25	c.G3759T	p.T1253T	AGCCAGCGTCTCC	.	75.0	35.0	132.0	0.0	.	275	.	C|0.998;T|0.002	Atlas-SNP
C1orf56	54964	hgsc.bcm.edu	hg19	1	151020559	151020559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C1orf56	NM_017860	exon1	c.G236A	p.G79E	TGGCTGGACCAGC	.	97.0	4.0	155.0	0.0	.	25	.	.	Atlas-SNP
SELENBP1	8991	hgsc.bcm.edu	hg19	1	151337178	151337178	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SELENBP1	NM_001258289	exon12	c.A1386G	p.E462E	AGAGCCTTCCCTG	.	90.0	4.0	100.0	0.0	.	44	.	.	Atlas-SNP
CD1E	913	hgsc.bcm.edu	hg19	1	158325760	158325760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	CD1E,NS,carcinoma,-1,1	CD1E	NM_001042584	exon4	c.G769A	p.G257R	CAGCGAGGGGACG	.	251.0	67.0	342.0	1.0	.	129	.	.	Atlas-SNP
SLAMF7	57823	hgsc.bcm.edu	hg19	1	160719673	160719673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLAMF7	NM_021181	exon3	c.A439G	p.T147A	TGTGTGACCAATC	.	95.0	4.0	156.0	0.0	.	54	.	.	Atlas-SNP
RGS4	5999	hgsc.bcm.edu	hg19	1	163042190	163042190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RGS4	NM_001102445	exon3	c.A341G	p.K114R	GTGCAAAAGATAT	.	71.0	20.0	93.0	0.0	.	97	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573	bycluster;by2hit2allele;byhapmap	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	GAAGAAGAACAAC	.	230.0	33.0	240.0	0.0	.	142	.	G|1.000;|0.000	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186275693	186275693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRG4	NM_005807	exon7	c.A842G	p.E281G	ATAAAGAGACAAC	.	86.0	5.0	112.0	0.0	.	259	.	.	Atlas-SNP
C1orf27	54953	hgsc.bcm.edu	hg19	1	186352261	186352261	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C1orf27	NM_001164245	exon3	c.A207G	p.E69E	GGATGAAGAATGG	.	94.0	5.0	112.0	0.0	.	41	.	.	Atlas-SNP
GUK1	2987	hgsc.bcm.edu	hg19	1	228333287	228333287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GUK1	NM_001242840	exon2	c.T137C	p.L46P	GGCTGCTCCAGGA	.	113.0	5.0	98.0	0.0	.	34	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11725969	11725969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GREB1	NM_148903	exon9	c.A1097G	p.E366G	CTGGAGAACCAGT	.	120.0	5.0	218.0	0.0	.	308	.	.	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	hg19	2	26644239	26644239	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC164	NM_145038	exon3	c.A327G	p.R109R	CAGGAGAGTCGAA	.	95.0	4.0	136.0	0.0	.	84	.	.	Atlas-SNP
SLC30A3	7781	hgsc.bcm.edu	hg19	2	27481800	27481800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC30A3	NM_003459	exon2	c.T98C	p.L33P	GTGAAGAGACTGA	.	91.0	4.0	134.0	0.0	.	39	.	.	Atlas-SNP
CLIP4	79745	hgsc.bcm.edu	hg19	2	29344378	29344378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CLIP4	NM_024692	exon2	c.T124C	p.S42P	ATGCCTTCAGACT	.	99.0	4.0	145.0	0.0	.	69	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31620567	31620567	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	XDH	NM_000379	exon6	c.A462G	p.R154R	GATGGGTCTGTAG	.	90.0	4.0	156.0	0.0	.	191	.	.	Atlas-SNP
NLRC4	58484	hgsc.bcm.edu	hg19	2	32449645	32449645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLRC4	NM_001199138	exon9	c.T2972C	p.L991S	TTGGATAACACTT	.	75.0	4.0	135.0	0.0	.	165	.	.	Atlas-SNP
PPM1B	5495	hgsc.bcm.edu	hg19	2	44436409	44436409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPM1B	NM_001033556	exon3	c.G907A	p.D303N	GTCTCAGATGAAG	.	25.0	4.0	54.0	0.0	.	97	.	.	Atlas-SNP
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48872210	48872210	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STON1-GTF2A1L	NM_001198593	exon7	c.T2454C	p.G818G	TCCTGGTTATCCC	.	78.0	4.0	146.0	0.0	.	180	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54152693	54152693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSME4	NM_014614	exon14	c.T1792C	p.S598P	CTTTGGAACATTG	.	123.0	5.0	226.0	0.0	.	247	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54159837	54159837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSME4	NM_014614	exon9	c.T1018C	p.F340L	GGTAAAAAGATGT	.	79.0	4.0	145.0	0.0	.	247	.	.	Atlas-SNP
PNPT1	87178	hgsc.bcm.edu	hg19	2	55906857	55906857	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PNPT1	NM_033109	exon8	c.T639C	p.T213T	ATTTAAAGTACTA	.	59.0	4.0	144.0	0.0	.	68	.	.	Atlas-SNP
PUS10	150962	hgsc.bcm.edu	hg19	2	61175205	61175205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PUS10	NM_144709	exon16	c.G1424A	p.R475H	TGGAGGCGGAAGT	.	109.0	5.0	208.0	0.0	.	49	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71592804	71592804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF638	NM_014497	exon6	c.G1963T	p.V655L	AAACAGGTGTCTG	.	118.0	47.0	198.0	0.0	.	179	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73716837	73716837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALMS1	NM_015120	exon10	c.A7748G	p.K2583R	ATGAAAAGGGATG	.	50.0	22.0	118.0	0.0	.	384	.	.	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128480841	128480841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WDR33	NM_018383	exon12	c.A1277G	p.D426G	ACTCCATCTTCAG	.	85.0	4.0	107.0	0.0	.	136	.	.	Atlas-SNP
KYNU	8942	hgsc.bcm.edu	hg19	2	143799616	143799616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KYNU	NM_001199241	exon15	c.T1273C	p.C425R	CCACAGTGTGACA	.	71.0	4.0	158.0	0.0	.	110	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152392260	152392260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEB	NM_001271208	exon142	c.T21257C	p.V7086A	TCGGCAACATACT	.	90.0	4.0	123.0	0.0	.	1697	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152534626	152534626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEB	NM_004543	exon33	c.C3331T	p.L1111L	GAACCAGTTTAGG	.	227.0	94.0	382.0	1.0	.	1697	.	.	Atlas-SNP
CACNB4	785	hgsc.bcm.edu	hg19	2	152732942	152732942	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CACNB4	NM_001145798	exon5	c.A519G	p.G173G	GTACCCTCCGTGA	.	100.0	5.0	124.0	0.0	.	108	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153435453	153435453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon8	c.C757G	p.L253V	ATTGCACTAAGCC	.	50.0	19.0	116.0	0.0	.	75	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153486415	153486415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL2	NM_052905	exon20	c.A2546G	p.D849G	GTTTAGATCTGGT	.	87.0	4.0	141.0	0.0	.	75	.	.	Atlas-SNP
MARCH7	64844	hgsc.bcm.edu	hg19	2	160615791	160615791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH7	NM_022826	exon7	c.T1838C	p.L613P	TGGAGCTTAACCT	.	87.0	4.0	158.0	0.0	.	48	.	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	166019086	166019086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCN3A	NM_001081676	exon8	c.A947G	p.K316R	TAATCCTTCCAGT	.	76.0	4.0	138.0	0.0	.	544	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168099632	168099632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	XIRP2	NM_152381	exon9	c.T1730C	p.I577T	AGTCCATTAGATG	.	89.0	5.0	191.0	0.0	.	914	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170103365	170103365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRP2	NM_004525	exon21	c.G3040A	p.E1014K	CCCCCTCGCATGT	.	149.0	51.0	259.0	0.0	.	751	.	.	Atlas-SNP
KLHL23	151230	hgsc.bcm.edu	hg19	2	170598012	170598012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KLHL23	NM_144711	exon3	c.A1331G	p.N444S	ATATCAACGAATG	.	99.0	4.0	189.0	0.0	.	52	.	.	Atlas-SNP
RAPGEF4	11069	hgsc.bcm.edu	hg19	2	173852991	173852991	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAPGEF4	NM_007023	exon13	c.T1218C	p.I406I	AGTCATTTACGGC	.	57.0	4.0	74.0	0.0	.	103	.	.	Atlas-SNP
AGPS	8540	hgsc.bcm.edu	hg19	2	178310274	178310274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AGPS	NM_003659	exon8	c.A790G	p.N264D	CAACAGAATCGAA	.	79.0	4.0	144.0	0.0	.	56	.	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	hg19	2	179247841	179247841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	OSBPL6	NM_001201480	exon18	c.T1787C	p.L596P	TTAACCTGTGGAA	.	74.0	4.0	169.0	0.0	.	178	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179434805	179434805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	TTN_ENST00000359218,right_upper_lobe,carcinoma,0,5	TTN	NM_001267550	exon326	c.A76054G	p.T25352A	ATCTTGTCCATCT	.	71.0	3.0	107.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179640606	179640606	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TTN	NM_001267550	exon28	c.A5985G	p.E1995E	CAGCTCTTCCGAC	.	97.0	4.0	225.0	0.0	.	18412	.	.	Atlas-SNP
C2orf88	84281	hgsc.bcm.edu	hg19	2	191064868	191064868	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C2orf88	NM_001042519	exon2	c.G282A	p.G94G	TGAGGGGCCTTGA	.	135.0	23.0	233.0	0.0	.	7	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197092980	197092980	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HECW2	NM_020760	exon23	c.3765-2A>G	.	CCAGCCTGTAACA	.	87.0	4.0	148.0	0.0	.	239	.	.	Atlas-SNP
CCDC150	284992	hgsc.bcm.edu	hg19	2	197539019	197539019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC150	NM_001080539	exon10	c.A1084G	p.T362A	CTTCAGACTGTTA	.	77.0	4.0	98.0	0.0	.	96	.	.	Atlas-SNP
GTF3C3	9330	hgsc.bcm.edu	hg19	2	197654717	197654717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GTF3C3	NM_001206774	exon5	c.T613C	p.F205L	ACTCAAACTGCAA	.	84.0	4.0	156.0	0.0	.	96	.	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	hg19	2	198948734	198948734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PLCL1_ENST00000428675,NS,carcinoma,0,3	PLCL1	NM_006226	exon2	c.G493A	p.E165K	ATAAAAGAGATCA	.	69.0	3.0	124.0	0.0	.	358	.	.	Atlas-SNP
SPATS2L	26010	hgsc.bcm.edu	hg19	2	201334662	201334662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATS2L	NM_001100423	exon11	c.A983G	p.D328G	AATATGACGAGGA	.	125.0	6.0	174.0	0.0	.	88	.	.	Atlas-SNP
KCTD18	130535	hgsc.bcm.edu	hg19	2	201369657	201369657	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCTD18	NM_152387	exon3	c.A186G	p.G62G	TAGACGTCCATCA	.	85.0	6.0	167.0	0.0	.	44	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207414830	207414830	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAM23	NM_003812	exon9	c.T879C	p.G293G	ACGTGGTATATTT	.	92.0	4.0	160.0	0.0	.	239	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210837964	210837964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC80	NM_032504	exon55	c.G8359A	p.A2787T	GGGCTGGCTGAGT	.	106.0	42.0	199.0	0.0	.	280	.	.	Atlas-SNP
MARCH4	57574	hgsc.bcm.edu	hg19	2	217124210	217124210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MARCH4	NM_020814	exon4	c.G1058A	p.G353D	GGGGTGCCTGCGG	.	101.0	34.0	166.0	0.0	.	50	.	.	Atlas-SNP
DNER	92737	hgsc.bcm.edu	hg19	2	230272034	230272034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNER	NM_139072	exon10	c.C1637A	p.P546H	GCGCAGGGATCCT	.	44.0	4.0	84.0	0.0	.	129	.	.	Atlas-SNP
CHRND	1144	hgsc.bcm.edu	hg19	2	233400022	233400022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHRND	NM_000751	exon12	c.G1554T	p.X518Y	CATCTAGGGTGGG	.	60.0	4.0	62.0	0.0	.	67	.	.	Atlas-SNP
HJURP	55355	hgsc.bcm.edu	hg19	2	234756059	234756059	+	Missense_Mutation	SNP	A	A	G	rs200818956	bycluster;by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HJURP	NM_018410	exon5	c.T386C	p.V129A	CAAGCAACTGACT	.	87.0	4.0	211.0	0.0	.	72	.	A|0.999;C|0.001	Atlas-SNP
HDLBP	3069	hgsc.bcm.edu	hg19	2	242194881	242194881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HDLBP	NM_005336	exon8	c.G988A	p.E330K	GGATCTCAACGGA	.	82.0	4.0	265.0	0.0	.	118	.	.	Atlas-SNP
EDEM1	9695	hgsc.bcm.edu	hg19	3	5252876	5252876	+	Missense_Mutation	SNP	G	G	C	rs148682616	bycluster;by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EDEM1	NM_014674	exon10	c.G1655C	p.S552T	TTCTCAGTGAGAC	.	73.0	31.0	151.0	0.0	.	45	.	G|1.000;A|0.000	Atlas-SNP
ATG7	10533	hgsc.bcm.edu	hg19	3	11354826	11354826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG7	NM_001136031	exon6	c.T460C	p.C154R	GCCCTCTGTCTTC	.	93.0	4.0	123.0	0.0	.	56	.	.	Atlas-SNP
EFHB	151651	hgsc.bcm.edu	hg19	3	19921261	19921261	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EFHB	NM_144715	exon13	c.G2364A	p.L788L	ATCAGACAGTTTG	.	61.0	5.0	132.0	0.0	.	186	.	.	Atlas-SNP
ZNF385D	79750	hgsc.bcm.edu	hg19	3	21606170	21606170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ZNF385D,NS,carcinoma,0,1	ZNF385D	NM_024697	exon3	c.C172T	p.P58S	GAATCGGGTCCAT	.	43.0	4.0	82.0	0.0	.	93	.	.	Atlas-SNP
LRRFIP2	9209	hgsc.bcm.edu	hg19	3	37151023	37151023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRRFIP2	NM_006309	exon12	c.A604G	p.S202G	CCAGACTGGCACT	.	90.0	4.0	139.0	0.0	.	71	.	.	Atlas-SNP
TOPAZ1	375337	hgsc.bcm.edu	hg19	3	44364606	44364606	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001145030	exon18	c.T4494C	p.Y1498Y	ACAATATAGCCTT	.	46.0	4.0	71.0	0.0	.	.	.	.	Atlas-SNP
TGM4	7047	hgsc.bcm.edu	hg19	3	44952888	44952888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TGM4	NM_003241	exon13	c.T1903C	p.S635P	CAGACCTCTGACC	.	91.0	4.0	147.0	0.0	.	82	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47155420	47155420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	SETD2_ENST00000409792,caecum,carcinoma,0,3	SETD2	NM_014159	exon5	c.T4661C	p.V1554A	AGTATGACTTCCA	.	83.0	5.0	123.0	0.0	.	721	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48622492	48622492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COL7A1	NM_000094	exon32	c.A3952G	p.T1318A	CAGGGGTCCCAGG	.	119.0	8.0	185.0	0.0	.	320	.	.	Atlas-SNP
FOXP1	27086	hgsc.bcm.edu	hg19	3	71026863	71026863	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FOXP1	NM_001244815	exon11	c.G1365A	p.A455A	GTTCTGCGCAATA	.	77.0	4.0	127.0	0.0	.	104	.	.	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100986353	100986353	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IMPG2	NM_016247	exon10	c.908+2T>C	.	AAAAGTACCTGTC	.	80.0	4.0	145.0	0.0	.	164	.	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108367792	108367792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DZIP3	NM_014648	exon17	c.A1990G	p.K664E	AAGAAGAAGACTA	.	95.0	4.0	132.0	0.0	.	111	.	.	Atlas-SNP
DPPA4	55211	hgsc.bcm.edu	hg19	3	109052833	109052833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DPPA4	NM_018189	exon2	c.C62A	p.S21Y	TCTGTGGAGGTCC	.	94.0	4.0	142.0	0.0	.	56	.	.	Atlas-SNP
MAATS1	89876	hgsc.bcm.edu	hg19	3	119421983	119421983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_033364	exon1	c.A38G	p.Q13R	AGGCCCAGCCGCA	.	124.0	6.0	201.0	0.0	.	.	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	hg19	3	122419251	122419251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PARP14	NM_017554	exon6	c.T1850C	p.L617P	AAGGGCTCACTCA	.	58.0	4.0	108.0	0.0	.	242	.	.	Atlas-SNP
HSPBAP1	79663	hgsc.bcm.edu	hg19	3	122459296	122459296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HSPBAP1	NM_024610	exon8	c.A1363C	p.T455P	GAGGAGTCGTAGT	.	281.0	16.0	448.0	0.0	.	32	.	.	Atlas-SNP
CCDC14	64770	hgsc.bcm.edu	hg19	3	123634213	123634213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCDC14	NM_022757	exon12	c.G2152A	p.D718N	CTTCATCAGAATC	.	78.0	4.0	127.0	0.0	.	97	.	.	Atlas-SNP
MUC13	56667	hgsc.bcm.edu	hg19	3	124646709	124646709	+	Missense_Mutation	SNP	G	G	A	rs75727765		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC13	NM_033049	exon2	c.C181T	p.P61S	GGAAAGGTGTATT	.	118.0	7.0	142.0	0.0	.	57	.	.	Atlas-SNP
C3orf72	401089	hgsc.bcm.edu	hg19	3	138668461	138668461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	C3orf72,NS,carcinoma,0,2	C3orf72	NM_001040061	exon2	c.A200T	p.H67L	TCCGGCATTCGAA	.	21.0	2.0	42.0	0.0	.	13	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	155838405	155838405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNAB1	NM_172160	exon1	c.T5C	p.L2P	CGATGCTGGCAGC	.	63.0	4.0	104.0	0.0	.	176	.	.	Atlas-SNP
TNIK	23043	hgsc.bcm.edu	hg19	3	170784050	170784050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TNIK	NM_015028	exon32	c.A3925G	p.T1309A	GTCCTGTTTCCAC	.	94.0	4.0	136.0	0.0	.	313	.	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	hg19	3	173997373	173997373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NLGN1	NM_014932	exon6	c.T1582G	p.F528V	TGCAATTTCTCCA	.	201.0	93.0	323.0	0.0	.	209	.	.	Atlas-SNP
TBL1XR1	79718	hgsc.bcm.edu	hg19	3	176765128	176765128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBL1XR1	NM_024665	exon9	c.A824G	p.N275S	TTCTTATTCCATT	.	106.0	5.0	226.0	0.0	.	87	.	.	Atlas-SNP
KCNMB2	10242	hgsc.bcm.edu	hg19	3	178560484	178560484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KCNMB2	NM_005832	exon6	c.T467C	p.M156T	AATCCATGTCCCT	.	79.0	4.0	138.0	0.0	.	35	.	.	Atlas-SNP
ABCC5	10057	hgsc.bcm.edu	hg19	3	183706403	183706403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCC5	NM_005688	exon4	c.T400C	p.W134R	GAGACCACACGTC	.	79.0	4.0	143.0	0.0	.	142	.	.	Atlas-SNP
LIPH	200879	hgsc.bcm.edu	hg19	3	185226629	185226629	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LIPH	NM_139248	exon10	c.A1305G	p.E435E	AACGTTTTCCATC	.	89.0	4.0	133.0	0.0	.	56	.	.	Atlas-SNP
MASP1	5648	hgsc.bcm.edu	hg19	3	186938875	186938875	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MASP1	NM_001879	exon15	c.C1857T	p.A619A	CAGCGGGGCATAA	.	140.0	62.0	197.0	0.0	.	240	.	.	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	hg19	3	196547362	196547362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAK2	NM_002577	exon13	c.A1274G	p.D425G	AAGTCGACATATG	.	94.0	4.0	198.0	0.0	.	113	.	.	Atlas-SNP
DLG1	1739	hgsc.bcm.edu	hg19	3	197023321	197023321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DLG1	NM_001204386	exon3	c.A47G	p.E16G	TATTCCTCCAAAA	.	82.0	4.0	154.0	0.0	.	120	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3210595	3210595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HTT	NM_002111	exon46	c.A6248G	p.D2083G	CGCTGGACGGGGA	.	73.0	4.0	114.0	0.0	.	221	.	.	Atlas-SNP
TBC1D14	57533	hgsc.bcm.edu	hg19	4	7006574	7006574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBC1D14	NM_001113361	exon8	c.T1274C	p.L425P	CAGAGCTCTTTGA	.	39.0	4.0	79.0	0.0	.	110	.	.	Atlas-SNP
KLB	152831	hgsc.bcm.edu	hg19	4	39447995	39447995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KLB	NM_175737	exon4	c.T1649C	p.L550P	CTCATCTGTACGT	.	43.0	4.0	29.0	0.0	.	95	.	.	Atlas-SNP
RHOH	399	hgsc.bcm.edu	hg19	4	40245536	40245536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	RHOH,colon,carcinoma,0,1	RHOH	NM_004310	exon3	c.G530A	p.R177Q	GGAGACGAAACAG	.	105.0	10.0	216.0	0.0	.	32	.	.	Atlas-SNP
REST	5978	hgsc.bcm.edu	hg19	4	57798184	57798184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	REST	NM_001193508	exon4	c.A3160G	p.K1054E	GCAGTCAAAGCGG	.	101.0	5.0	189.0	0.0	.	104	.	.	Atlas-SNP
RUFY3	22902	hgsc.bcm.edu	hg19	4	71668679	71668679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RUFY3	NM_001037442	exon16	c.A1629C	p.Q543H	GCTGCAACCCCAC	.	59.0	4.0	113.0	0.0	.	61	.	.	Atlas-SNP
ANTXR2	118429	hgsc.bcm.edu	hg19	4	80905088	80905088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ANTXR2_ENST00000403729,colon,carcinoma,0,1	ANTXR2	NM_001145794	exon14	c.A1123G	p.T375A	CCACAGTTGGCCA	.	50.0	2.0	114.0	0.0	.	97	.	.	Atlas-SNP
COPS4	51138	hgsc.bcm.edu	hg19	4	83996548	83996548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COPS4	NM_016129	exon10	c.A1186G	p.T396A	GAATGGACAGCAC	.	92.0	4.0	149.0	0.0	.	31	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107154200	107154200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBCK	NM_001163436	exon17	c.T1534C	p.C512R	GATGACAGCGAGG	.	76.0	4.0	109.0	0.0	.	89	.	.	Atlas-SNP
PRMT10	90826	hgsc.bcm.edu	hg19	4	148559822	148559822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRMT10	NM_138364	exon12	c.T2399C	p.L800S	GTATCCAACCTAA	.	88.0	4.0	186.0	0.0	.	68	.	.	Atlas-SNP
FBXW7	55294	hgsc.bcm.edu	hg19	4	153268212	153268212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FBXW7	NM_033632	exon4	c.T596C	p.L199P	GGTACAAGCCCAG	.	95.0	4.0	179.0	0.0	.	2157	.	.	Atlas-SNP
TLR2	7097	hgsc.bcm.edu	hg19	4	154625449	154625449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TLR2	NM_003264	exon3	c.G1390A	p.V464I	TTAGATGTTAGCA	.	101.0	44.0	144.0	0.0	.	84	.	.	Atlas-SNP
MAP9	79884	hgsc.bcm.edu	hg19	4	156294381	156294381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP9	NM_001039580	exon4	c.T388C	p.S130P	ATTCAGAGAAAGA	.	78.0	4.0	108.0	0.0	.	79	.	.	Atlas-SNP
ING2	3622	hgsc.bcm.edu	hg19	4	184426478	184426478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ING2	NM_001564	exon1	c.A130G	p.R44G	ATGCAGAGGAACG	.	162.0	7.0	307.0	0.0	.	20	.	.	Atlas-SNP
SNX25	83891	hgsc.bcm.edu	hg19	4	186244833	186244833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SNX25	NM_031953	exon9	c.T1136C	p.V379A	AAGATGTTTATGA	.	98.0	4.0	200.0	0.0	.	100	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187628064	187628064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FAT1	NM_005245	exon2	c.A2918G	p.N973S	TCGAAGTTTCCTT	.	97.0	4.0	204.0	0.0	.	500	.	.	Atlas-SNP
PAPD7	11044	hgsc.bcm.edu	hg19	5	6743905	6743905	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAPD7	NM_001171805	exon6	c.T447C	p.G149G	TACAGGTGGAATT	.	87.0	4.0	147.0	0.0	.	69	.	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38337733	38337733	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EGFLAM	NM_001205301	exon2	c.207+2T>C	.	ACACTGTGAGTAC	.	57.0	26.0	128.0	0.0	.	302	.	.	Atlas-SNP
RPL37	6167	hgsc.bcm.edu	hg19	5	40834674	40834674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RPL37	NM_000997	exon2	c.A38G	p.N13S	GTCTTATTGCGAC	.	76.0	4.0	160.0	0.0	.	7	.	.	Atlas-SNP
ZNF131	7690	hgsc.bcm.edu	hg19	5	43161821	43161821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF131	NM_003432	exon6	c.A740G	p.K247R	ACATGAAATCACA	.	100.0	4.0	183.0	0.0	.	51	.	.	Atlas-SNP
NNT	23530	hgsc.bcm.edu	hg19	5	43628311	43628311	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NNT	NM_182977	exon7	c.T786C	p.A262A	TGCAGCTTTGGAA	.	139.0	6.0	255.0	0.0	.	92	.	.	Atlas-SNP
GPX8	493869	hgsc.bcm.edu	hg19	5	54459895	54459895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPX8	NM_001008397	exon3	c.A479G	p.K160R	CAAAGAAGGAACC	.	52.0	4.0	87.0	0.0	.	20	.	.	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	hg19	5	65321309	65321309	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ERBB2IP	NM_001253701	exon11	c.T819C	p.G273G	ATTAGGTTCGTTG	.	56.0	4.0	78.0	0.0	.	120	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71492148	71492148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MAP1B	NM_005909	exon5	c.A2966G	p.K989R	GGGAGAAGAGGGA	.	123.0	5.0	222.0	0.0	.	243	.	.	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71756449	71756449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF366	NM_152625	exon2	c.A875G	p.Q292R	CTGAGCTGCTTGA	.	98.0	4.0	146.0	0.0	.	108	.	.	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	hg19	5	100222062	100222062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ST8SIA4	NM_175052	exon3	c.A488G	p.H163R	AAATTGTGACTGT	.	95.0	4.0	132.0	0.0	.	77	.	.	Atlas-SNP
FER	2241	hgsc.bcm.edu	hg19	5	108436123	108436123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FER	NM_005246	exon17	c.A1951G	p.R651G	CTGAGAAGGAAGA	.	74.0	4.0	122.0	0.0	.	100	.	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112920155	112920155	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	YTHDC2	NM_022828	exon26	c.T3804C	p.P1268P	TAGTCCTTCTCCT	.	98.0	4.0	159.0	0.0	.	118	.	.	Atlas-SNP
PGGT1B	5229	hgsc.bcm.edu	hg19	5	114548112	114548112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PGGT1B	NM_005023	exon9	c.A1121G	p.H374R	GAGATATGTACAT	.	153.0	52.0	296.0	0.0	.	26	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118469314	118469314	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DMXL1	NM_005509	exon12	c.A1695G	p.K565K	ACAAAAACCTTCT	.	103.0	5.0	179.0	0.0	.	268	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130834162	130834162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAPGEF6	NM_016340	exon12	c.T1393C	p.F465L	TCTTAAACCATTC	.	87.0	4.0	119.0	0.0	.	361	.	.	Atlas-SNP
FAM53C	51307	hgsc.bcm.edu	hg19	5	137682560	137682560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	FAM53C,colon,carcinoma,-1,1	FAM53C	NM_001135647	exon5	c.T1091C	p.V364A	GGGCTGTGCGGTG	.	72.0	3.0	106.0	0.0	.	35	.	.	Atlas-SNP
PCDHB7	56129	hgsc.bcm.edu	hg19	5	140552784	140552784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PCDHB7,NS,carcinoma,0,1	PCDHB7	NM_018940	exon1	c.T368C	p.V123A	TATGGGTCAGAGA	.	48.0	3.0	91.0	0.0	.	231	.	.	Atlas-SNP
PCDHGB6	56100	hgsc.bcm.edu	hg19	5	140790042	140790042	+	Missense_Mutation	SNP	A	A	G	rs185995562	by1000genomes;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PCDHGB6	NM_032100	exon1	c.A2273G	p.H758R	TTGCACATACGGG	.	125.0	5.0	194.0	0.0	.	120	.	A|1.000;T|0.000	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145613206	145613206	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RBM27	NM_018989	exon7	c.C1044T	p.G348G	TCCAGGCCCAGGC	.	68.0	17.0	156.0	0.0	.	119	.	.	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	hg19	5	145613209	145613209	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	RBM27,colon,carcinoma,0,1	RBM27	NM_018989	exon7	c.A1047T	p.P349P	AGGCCCAGGCCCG	.	71.0	16.0	162.0	0.0	.	119	.	.	Atlas-SNP
HRH2	3274	hgsc.bcm.edu	hg19	5	175111079	175111079	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HRH2	NM_001131055	exon2	c.A843G	p.S281S	CAACTCAGCCCTG	.	83.0	4.0	144.0	0.0	.	108	.	.	Atlas-SNP
RMND5B	64777	hgsc.bcm.edu	hg19	5	177570698	177570698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RMND5B	NM_022762	exon6	c.T497C	p.L166P	AAGCCCTGCACGA	.	107.0	5.0	157.0	0.0	.	37	.	.	Atlas-SNP
CANX	821	hgsc.bcm.edu	hg19	5	179155615	179155615	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CANX	NM_001746	exon15	c.A1749G	p.S583S	CAGATCACCAAGA	.	92.0	4.0	226.0	0.0	.	47	.	.	Atlas-SNP
PAK1IP1	55003	hgsc.bcm.edu	hg19	6	10702604	10702604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAK1IP1	NM_017906	exon3	c.A250G	p.T84A	ATAGGTACAATAA	.	76.0	17.0	97.0	0.0	.	30	.	.	Atlas-SNP
CDKAL1	54901	hgsc.bcm.edu	hg19	6	21065331	21065331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKAL1	NM_017774	exon12	c.A1108G	p.T370A	GGAGAAACAGATC	.	125.0	5.0	146.0	0.0	.	55	.	.	Atlas-SNP
GNL1	2794	hgsc.bcm.edu	hg19	6	30523924	30523924	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GNL1	NM_005275	exon1	c.A57G	p.K19K	CTCCCGTTTGTCC	.	89.0	4.0	111.0	0.0	.	47	.	.	Atlas-SNP
FLOT1	10211	hgsc.bcm.edu	hg19	6	30707949	30707949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FLOT1	NM_005803	exon8	c.G709T	p.A237S	GATAGGCCAGGTC	.	91.0	24.0	93.0	0.0	.	28	.	.	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31740763	31740763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.,1	.	NM_025258	exon7	c.T1055C	p.V352A	TAGTGGACAGGCT	.	12.0	5.0	22.0	0.0	.	.	.	.	Atlas-SNP
UHRF1BP1	54887	hgsc.bcm.edu	hg19	6	34831811	34831811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UHRF1BP1	NM_017754	exon15	c.C3248T	p.A1083V	GGGTGGCAGCCCC	.	61.0	17.0	99.0	0.0	.	102	.	.	Atlas-SNP
MRPS10	55173	hgsc.bcm.edu	hg19	6	42185570	42185570	+	Silent	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPS10	NM_018141	exon1	c.G18T	p.A6A	ACCGAACGCTGTC	.	59.0	16.0	85.0	0.0	.	9	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43183025	43183025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CUL9	NM_015089	exon30	c.T5897C	p.V1966A	CAGATGTCCCTTT	.	66.0	4.0	80.0	0.0	.	248	.	.	Atlas-SNP
C6orf223	221416	hgsc.bcm.edu	hg19	6	43970788	43970788	+	Silent	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C6orf223	NM_153246	exon4	c.G654T	p.R218R	GGCACGGCTAATG	.	135.0	45.0	145.0	0.0	.	14	.	.	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	hg19	6	44150883	44150883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CAPN11	NM_007058	exon21	c.A2045G	p.Q682R	TAATGCAGGTCCT	.	77.0	4.0	99.0	0.0	.	66	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79692705	79692705	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHIP	NM_017934	exon23	c.A2667G	p.K889K	CTTCTGTTTTTCA	.	50.0	4.0	123.0	0.0	.	177	.	.	Atlas-SNP
RNGTT	8732	hgsc.bcm.edu	hg19	6	89322527	89322527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNGTT	NM_003800	exon16	c.T1705C	p.S569P	CTTGAGAAGCTGC	.	72.0	4.0	208.0	0.0	.	52	.	.	Atlas-SNP
GABRR2	2570	hgsc.bcm.edu	hg19	6	89977775	89977775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GABRR2	NM_002043	exon5	c.T553C	p.F185L	GGGGAAAGTGGCT	.	89.0	4.0	293.0	0.0	.	41	.	.	Atlas-SNP
ANKRD6	22881	hgsc.bcm.edu	hg19	6	90326289	90326289	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ANKRD6	NM_001242809	exon8	c.A627G	p.T209T	AGACACAGCACTT	.	100.0	4.0	287.0	0.0	.	51	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99374410	99374410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FBXL4	NM_012160	exon3	c.T455G	p.I152S	ATTCTAATGACTG	.	63.0	45.0	187.0	0.0	.	54	.	.	Atlas-SNP
COQ3	51805	hgsc.bcm.edu	hg19	6	99823850	99823850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COQ3	NM_017421	exon5	c.A695G	p.E232G	AATGTTTCTAGAT	.	63.0	4.0	164.0	0.0	.	19	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101095214	101095214	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASCC3	NM_006828	exon21	c.T3366C	p.G1122G	AGCCCAACCCCAA	.	67.0	4.0	168.0	0.0	.	205	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129621989	129621989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LAMA2	NM_000426	exon22	c.G3146A	p.W1049X	ATACCTGGGGCCA	.	87.0	4.0	182.0	0.0	.	481	.	.	Atlas-SNP
ZBTB2	57621	hgsc.bcm.edu	hg19	6	151686763	151686763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZBTB2	NM_020861	exon3	c.G1438A	p.E480K	GCCCTTCGTCTAG	.	92.0	5.0	242.0	0.0	.	30	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	42.0	5.0	91.0	0.0	.	58	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4091349	4091349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SDK1	NM_152744	exon19	c.G2798A	p.G933E	ACCATGGACACAT	.	199.0	75.0	200.0	0.0	.	361	.	.	Atlas-SNP
RNF216	54476	hgsc.bcm.edu	hg19	7	5781438	5781438	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNF216	NM_207111	exon4	c.A210G	p.K70K	CTGAGGTTTATTT	.	89.0	4.0	96.0	0.0	.	71	.	.	Atlas-SNP
GLCCI1	113263	hgsc.bcm.edu	hg19	7	8126065	8126065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GLCCI1	NM_138426	exon8	c.G1541A	p.G514D	CAGCGGGCTCCAT	.	161.0	7.0	132.0	0.0	.	50	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12620702	12620702	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCIN	NM_001112706	exon3	c.T372C	p.S124S	GGCATCTGGATTA	.	94.0	4.0	103.0	0.0	.	105	.	.	Atlas-SNP
SNX13	23161	hgsc.bcm.edu	hg19	7	17933019	17933019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SNX13	NM_015132	exon3	c.C164T	p.S55L	TTCTCTGAGTTTG	.	199.0	41.0	229.0	0.0	.	113	.	.	Atlas-SNP
SP4	6671	hgsc.bcm.edu	hg19	7	21469063	21469063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SP4	NM_003112	exon3	c.A280G	p.T94A	CTGGTAACAACGC	.	104.0	5.0	105.0	0.0	.	91	.	.	Atlas-SNP
STK31	56164	hgsc.bcm.edu	hg19	7	23802460	23802460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STK31	NM_031414	exon11	c.A1334G	p.Q445R	AAATGCAGCAGAA	.	119.0	5.0	164.0	0.0	.	175	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	32338269	32338269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PDE1C	NM_001191058	exon1	c.A79G	p.T27A	CTATGGTGAAGCT	.	81.0	4.0	106.0	0.0	.	465	.	.	Atlas-SNP
DNAJB9	4189	hgsc.bcm.edu	hg19	7	108212222	108212222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAJB9	NM_012328	exon2	c.A52G	p.T18A	ATGATAACAGAAT	.	98.0	4.0	146.0	0.0	.	25	.	.	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	hg19	7	133041177	133041177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EXOC4	NM_021807	exon6	c.T857C	p.L286S	AGGGCTTGGCGAA	.	86.0	4.0	109.0	0.0	.	118	.	.	Atlas-SNP
AGPAT5	55326	hgsc.bcm.edu	hg19	8	6614716	6614716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	AGPAT5,NS,carcinoma,0,1	AGPAT5	NM_018361	exon8	c.C902A	p.P301Q	CAGATCCAGAAAG	.	48.0	2.0	108.0	0.0	.	31	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10464506	10464506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1L1	NM_178857	exon4	c.G7102A	p.E2368K	AACCTTCACTGGC	.	32.0	25.0	96.0	0.0	.	453	.	.	Atlas-SNP
MTMR7	9108	hgsc.bcm.edu	hg19	8	17218727	17218727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MTMR7	NM_004686	exon4	c.A367G	p.R123G	GCTCTCTTTCTTC	.	97.0	4.0	251.0	0.0	.	75	.	.	Atlas-SNP
GSR	2936	hgsc.bcm.edu	hg19	8	30537135	30537135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GSR	NM_000637	exon13	c.T1471C	p.F491L	CAGCAAAACCCTG	.	79.0	4.0	319.0	0.0	.	53	.	.	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37699046	37699046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR124	NM_032777	exon19	c.T3190C	p.F1064L	GGCCTCTTCGTCT	.	49.0	4.0	138.0	0.0	.	85	.	.	Atlas-SNP
CHRNA6	8973	hgsc.bcm.edu	hg19	8	42611479	42611479	+	Missense_Mutation	SNP	A	A	G	rs373608967		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHRNA6	NM_004198	exon5	c.T863C	p.V288A	GTGATGACCAGCA	.	119.0	6.0	153.0	0.0	.	60	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55542668	55542668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RP1	NM_006269	exon4	c.T6226A	p.F2076I	AACAGATTCCAGG	.	68.0	24.0	89.0	0.0	.	429	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61757545	61757545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHD7	NM_017780	exon22	c.A4973G	p.E1658G	GGGATGAGAATAT	.	100.0	4.0	147.0	0.0	.	534	.	.	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	hg19	8	70970987	70970987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PRDM14,caecum,carcinoma,0,1	PRDM14	NM_024504	exon6	c.T1274C	p.V425A	TTGTCCACACAGG	.	124.0	5.0	138.0	1.0	.	102	.	.	Atlas-SNP
STMN2	11075	hgsc.bcm.edu	hg19	8	80553730	80553730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STMN2	NM_007029	exon3	c.A233G	p.D78G	AGAAAGACCTGTC	.	111.0	5.0	149.0	0.0	.	23	.	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126071720	126071720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA0196	NM_014846	exon13	c.A1586G	p.K529R	AGAAACTTTCGAG	.	71.0	4.0	81.0	0.0	.	90	.	.	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	141381200	141381200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRAPPC9	NM_031466	exon8	c.C1508T	p.A503V	AAGAACGCAGACT	.	65.0	21.0	93.0	0.0	.	114	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144890960	144890960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCRIB	NM_015356	exon15	c.G1934A	p.W645X	TTGTGCCAGCCCC	.	52.0	11.0	63.0	0.0	.	192	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144944289	144944289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EPPK1	NM_031308	exon1	c.G3133A	p.A1045T	CTGTGGCCACTTG	.	154.0	52.0	170.0	0.0	.	199	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	hg19	8	145619449	145619449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	CPSF1,NS,carcinoma,0,1	CPSF1	NM_013291	exon33	c.G3811T	p.V1271L	ACATACCCAGAAA	.	167.0	47.0	272.0	0.0	.	92	.	.	Atlas-SNP
PLGRKT	55848	hgsc.bcm.edu	hg19	9	5361763	5361763	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_018465	exon4	c.A207G	p.T69T	CCCAGCTGTTAAA	.	62.0	4.0	81.0	0.0	.	.	.	.	Atlas-SNP
ZDHHC21	340481	hgsc.bcm.edu	hg19	9	14639974	14639974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZDHHC21	NM_178566	exon8	c.A541G	p.R181G	CTAGTCTCATTAT	.	61.0	7.0	76.0	0.0	.	22	.	.	Atlas-SNP
TMEM8B	51754	hgsc.bcm.edu	hg19	9	35853674	35853674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM8B	NM_001042590	exon13	c.G1256T	p.G419V	TTGCGGGCAGTGT	.	182.0	65.0	289.0	0.0	.	53	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79322643	79322643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PRUNE2_ENST00000376718,colon,carcinoma,0,1	PRUNE2	NM_015225	exon8	c.A4547G	p.K1516R	GACCCCTTAACGT	.	65.0	3.0	82.0	0.0	.	331	.	.	Atlas-SNP
UBQLN1	29979	hgsc.bcm.edu	hg19	9	86276838	86276838	+	Missense_Mutation	SNP	A	A	G	rs79530639	bycluster	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UBQLN1	NM_013438	exon11	c.T1634C	p.V545A	AATCTGACTTCTG	.	103.0	5.0	140.0	0.0	.	49	.	.	Atlas-SNP
NAA35	60560	hgsc.bcm.edu	hg19	9	88611410	88611410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NAA35	NM_024635	exon12	c.T974C	p.M325T	AAGAAATGGTGAA	.	90.0	4.0	166.0	0.0	.	50	.	.	Atlas-SNP
BICD2	23299	hgsc.bcm.edu	hg19	9	95481866	95481866	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BICD2	NM_001003800	exon6	c.1063-2A>G	.	TCCATCTGCAAAG	.	56.0	4.0	91.0	0.0	.	68	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107568697	107568697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA1	NM_005502	exon31	c.A4289G	p.Q1430R	CCTGCCTGGCAGG	.	71.0	4.0	170.0	0.0	.	244	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107583711	107583711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA1	NM_005502	exon20	c.A2905G	p.S969G	TGGTGCTCATCTC	.	87.0	4.0	118.0	0.0	.	244	.	.	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	hg19	9	111734974	111734974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CTNNAL1	NM_003798	exon9	c.A1328G	p.Q443R	TCTTTCTGTTCAG	.	75.0	4.0	108.0	0.0	.	51	.	.	Atlas-SNP
C9orf43	257169	hgsc.bcm.edu	hg19	9	116187645	116187645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	C9orf43,colon,carcinoma,0,1	C9orf43	NM_152786	exon10	c.G887A	p.R296Q	AGCAGCGGCAGCA	.	65.0	6.0	123.0	1.0	.	49	.	.	Atlas-SNP
PSMD5	5711	hgsc.bcm.edu	hg19	9	123589185	123589185	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PSMD5	NM_005047	exon6	c.A672G	p.R224R	GGTGGCTCTAAAA	.	75.0	4.0	132.0	0.0	.	34	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123857201	123857201	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTRL	NM_007018	exon3	c.A384G	p.E128E	ACTTGAAGTACTG	.	54.0	4.0	102.0	0.0	.	161	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139395092	139395092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NOTCH1	NM_017617	exon31	c.A5846G	p.E1949G	CTGGCCTCCAGCA	.	117.0	5.0	201.0	0.0	.	1980	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139913717	139913717	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA2	NM_212533	exon11	c.T1557C	p.Y519Y	CTGGGCATAGTGA	.	84.0	4.0	159.0	0.0	.	113	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16970249	16970249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	CUBN,NS,carcinoma,0,1	CUBN	NM_001081	exon41	c.G6178A	p.G2060R	TGGGCCCAGGGAT	.	75.0	3.0	124.0	0.0	.	515	.	.	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	hg19	10	21134258	21134258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NEBL	NM_006393	exon12	c.A1156G	p.R386G	ATGACCTTCCTTT	.	74.0	6.0	105.0	0.0	.	199	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24834953	24834953	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA1217	NM_019590	exon21	c.A5532T	p.T1844T	CCAAACAGGACCA	.	196.0	73.0	346.0	0.0	.	235	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85972881	85972881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDHR1	NM_001171971	exon16	c.T1817C	p.L606P	ACAACCTGGTGGA	.	114.0	5.0	143.0	0.0	.	122	.	.	Atlas-SNP
CCSER2	54462	hgsc.bcm.edu	hg19	10	86131960	86131960	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCSER2	NM_018999	exon2	c.T1152C	p.D384D	ACATGATGCTAAA	.	98.0	4.0	118.0	0.0	.	7	.	.	Atlas-SNP
HELLS	3070	hgsc.bcm.edu	hg19	10	96354567	96354567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HELLS	NM_018063	exon19	c.G2204A	p.R735K	TGGAAAGAGCAGC	.	90.0	5.0	102.0	0.0	.	63	.	.	Atlas-SNP
SMNDC1	10285	hgsc.bcm.edu	hg19	10	112063340	112063340	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SMNDC1	NM_005871	exon2	c.A6G	p.S2S	ATCCTCTGACATC	.	69.0	4.0	85.0	0.0	.	9	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	116931103	116931103	+	Silent	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATRNL1	NM_001276282	exon8	c.A1401T	p.L467L	TTCTCTAATAAAA	.	81.0	7.0	90.0	0.0	.	219	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135012267	135012267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KNDC1	NM_152643	exon14	c.G2255A	p.R752H	TGCAGCGTGACTC	.	43.0	13.0	37.0	0.0	.	155	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1256342	1256342	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC5B	NM_002458	exon22	c.C2658T	p.C886C	GGAGTGCAGCCAC	.	100.0	48.0	137.0	0.0	.	473	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4142990	4142990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RRM1	NM_001033	exon10	c.A1033T	p.N345Y	GAGACTAATCAGG	.	101.0	42.0	209.0	0.0	.	31	.	.	Atlas-SNP
UBQLN3	50613	hgsc.bcm.edu	hg19	11	5528949	5528949	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UBQLN3	NM_017481	exon2	c.G1840C	p.A614P	AGTGAGCCTCAGG	.	70.0	29.0	126.0	0.0	.	107	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	G	rs78250081	bycluster;alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SMPD1	NM_000543	exon1	c.C113G	p.A38G	TGCTGGCGCTGGC	.	19.0	7.0	0.0	0.0	.	108	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411942	6411942	+	Silent	SNP	G	G	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SMPD1	NM_000543	exon1	c.G114C	p.A38A	GCTGGCGCTGGCG	.	19.0	7.0	0.0	0.0	.	108	.	.	Atlas-SNP
CYB5R2	51700	hgsc.bcm.edu	hg19	11	7687733	7687733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CYB5R2	NM_016229	exon8	c.A607G	p.T203A	GGTGAGTCCTGGC	.	81.0	4.0	168.0	0.0	.	23	.	.	Atlas-SNP
ZNF143	7702	hgsc.bcm.edu	hg19	11	9546829	9546829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF143	NM_003442	exon15	c.T1729C	p.S577P	ACTGCCTCATCAG	.	83.0	5.0	155.0	0.0	.	38	.	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	hg19	11	12183895	12183895	+	Silent	SNP	C	C	T	rs368678535	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MICAL2	NM_014632	exon3	c.C193T	p.L65L	AAAGCCCTGTGGT	.	89.0	4.0	161.0	0.0	.	114	.	.	Atlas-SNP
TRAF6	7189	hgsc.bcm.edu	hg19	11	36520043	36520043	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRAF6	NM_004620	exon3	c.T444C	p.L148L	TACCTCAAGATGT	.	88.0	4.0	125.0	0.0	.	56	.	.	Atlas-SNP
PHF21A	51317	hgsc.bcm.edu	hg19	11	45991402	45991402	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PHF21A	NM_016621	exon8	c.T666C	p.P222P	TCTAGGAGGGGGG	.	122.0	5.0	182.0	0.0	.	107	.	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46890579	46890579	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LRP4	NM_002334	exon32	c.A4797G	p.G1599G	CATGAGTCCTTCC	.	164.0	7.0	255.0	0.0	.	160	.	.	Atlas-SNP
DDB2	1643	hgsc.bcm.edu	hg19	11	47238448	47238448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DDB2	NM_000107	exon3	c.C304T	p.R102W	TCTTACCGGATAT	.	78.0	4.0	121.0	0.0	.	31	.	.	Atlas-SNP
PATL1	219988	hgsc.bcm.edu	hg19	11	59423450	59423450	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PATL1	NM_152716	exon7	c.A792G	p.A264A	AAGCTGTGCTCTC	.	116.0	5.0	189.0	0.0	.	92	.	.	Atlas-SNP
TMEM138	51524	hgsc.bcm.edu	hg19	11	61136089	61136089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM138	NM_016464	exon5	c.T397C	p.F133L	TGCTACTTCTATA	.	96.0	4.0	184.0	0.0	.	16	.	.	Atlas-SNP
BSCL2	26580	hgsc.bcm.edu	hg19	11	62458612	62458612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BSCL2	NM_001122955	exon8	c.T1007C	p.V336A	ATGTTAACCTGTG	.	98.0	5.0	154.0	0.0	.	35	.	.	Atlas-SNP
ZBTB3	79842	hgsc.bcm.edu	hg19	11	62521471	62521471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZBTB3	NM_024784	exon1	c.A64G	p.R22G	GAGATCTTTTTCG	.	89.0	4.0	145.0	0.0	.	47	.	.	Atlas-SNP
STX5	6811	hgsc.bcm.edu	hg19	11	62592977	62592977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STX5	NM_003164	exon6	c.T458C	p.L153P	TCCTGGAGCTGAG	.	118.0	5.0	182.0	0.0	.	42	.	.	Atlas-SNP
WDR74	54663	hgsc.bcm.edu	hg19	11	62600449	62600449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	WDR74_ENST00000525239,NS,carcinoma,0,2	WDR74	NM_018093	exon12	c.A1133G	p.K378R	GGCCGCTTCTTCT	.	49.0	2.0	79.0	0.0	.	36	.	.	Atlas-SNP
PYGM	5837	hgsc.bcm.edu	hg19	11	64527357	64527357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PYGM	NM_001164716	exon1	c.T14C	p.L5P	TCTGACAGGGGCC	.	81.0	4.0	127.0	0.0	.	77	.	.	Atlas-SNP
CAPN1	823	hgsc.bcm.edu	hg19	11	64977873	64977873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CAPN1	NM_001198869	exon20	c.T2009C	p.V670A	TGGCGGTCGACTT	.	75.0	5.0	142.0	0.0	.	44	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65350029	65350029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EHBP1L1	NM_001099409	exon9	c.A1886G	p.E629G	AGTGTGAGGGACT	.	76.0	4.0	138.0	0.0	.	64	.	.	Atlas-SNP
MRPL48	51642	hgsc.bcm.edu	hg19	11	73536778	73536778	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MRPL48	NM_016055	exon4	c.G138A	p.R46R	CAGTCGGCCCTAC	.	63.0	4.0	93.0	0.0	.	16	.	.	Atlas-SNP
TMEM126A	84233	hgsc.bcm.edu	hg19	11	85367380	85367380	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM126A	NM_032273	exon5	c.A423G	p.K141K	ACACAAAGGGAAC	.	83.0	4.0	161.0	0.0	.	20	.	.	Atlas-SNP
HYOU1	10525	hgsc.bcm.edu	hg19	11	118925746	118925746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HYOU1	NM_006389	exon6	c.T446C	p.V149A	CCCAACACTTCCT	.	31.0	4.0	71.0	0.0	.	88	.	.	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	hg19	12	970296	970296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	WNK1_ENST00000537687,rectum,carcinoma,-2,1	WNK1	NM_001184985	exon7	c.G1738A	p.E580K	GAGCAAGAAAAAA	.	56.0	3.0	88.0	2.0	.	403	.	.	Atlas-SNP
RAD51AP1	10635	hgsc.bcm.edu	hg19	12	4665649	4665649	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAD51AP1	NM_001130862	exon9	c.A903G	p.K301K	CAAGAAACCTAAA	.	62.0	4.0	106.0	0.0	.	30	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9345181	9345181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PZP	NM_002864	exon12	c.A1409G	p.E470G	ATAGTCTCCGTGT	.	134.0	6.0	181.0	0.0	.	422	.	.	Atlas-SNP
PLBD1	79887	hgsc.bcm.edu	hg19	12	14659104	14659104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PLBD1	NM_024829	exon10	c.G1471A	p.D491N	TTGTGTCATAACA	.	77.0	5.0	160.0	0.0	.	36	.	.	Atlas-SNP
CMAS	55907	hgsc.bcm.edu	hg19	12	22215331	22215331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CMAS	NM_018686	exon7	c.A1077G	p.K359K	GAGAAAAGAAATG	.	141.0	6.0	255.0	0.0	.	45	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41318438	41318438	+	Silent	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CNTN1	NM_001256063	exon6	c.C480G	p.P160P	TGACCCCCCATAC	.	118.0	27.0	240.0	0.0	.	207	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43856718	43856718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAMTS20	NM_025003	exon11	c.A1594G	p.T532A	AGTCTGTTCCATC	.	82.0	4.0	145.0	0.0	.	635	.	.	Atlas-SNP
PUS7L	83448	hgsc.bcm.edu	hg19	12	44148626	44148626	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	PUS7L,NS,carcinoma,0,1	PUS7L	NM_001098614	exon2	c.C423T	p.A141A	ATCACAGGCAAAA	.	75.0	25.0	119.0	0.0	.	73	.	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	hg19	12	54757190	54757190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPR84	NM_020370	exon2	c.T446C	p.V149A	CTGGCCACGCCCA	.	50.0	24.0	83.0	0.0	.	38	.	.	Atlas-SNP
STAT6	6778	hgsc.bcm.edu	hg19	12	57498314	57498314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STAT6	NM_001178079	exon11	c.A1145G	p.E382G	CACTTCTCCTCTG	.	81.0	4.0	141.0	0.0	.	69	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72004493	72004493	+	Silent	SNP	A	A	G	rs377232932		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZFC3H1	NM_144982	exon34	c.T5814C	p.C1938C	TGATGCACAAAGA	.	80.0	4.0	97.0	0.0	.	172	.	.	Atlas-SNP
PPP1R12A	4659	hgsc.bcm.edu	hg19	12	80226243	80226243	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PPP1R12A	NM_002480	exon4	c.A516G	p.E172E	TTCTTCTTCCTTT	.	91.0	4.0	133.0	0.0	.	76	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80887157	80887157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PTPRQ	NM_001145026	exon7	c.C947T	p.A316V	CACTTGCTACATT	.	56.0	17.0	94.0	0.0	.	119	.	.	Atlas-SNP
NR2C1	7181	hgsc.bcm.edu	hg19	12	95425194	95425194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NR2C1	NM_001032287	exon11	c.T1324C	p.W442R	CTTGCCAGCACTG	.	61.0	4.0	88.0	0.0	.	56	.	.	Atlas-SNP
NUP37	79023	hgsc.bcm.edu	hg19	12	102470582	102470582	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP37	NM_024057	exon7	c.T766C	p.L256L	TGAATAAGCAGGC	.	76.0	4.0	143.0	0.0	.	26	.	.	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	hg19	12	105534132	105534132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KIAA1033	NM_015275	exon16	c.A1513G	p.T505A	CATATAACACAGC	.	85.0	4.0	256.0	0.0	.	83	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109617834	109617834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACACB	NM_001093	exon10	c.T1760C	p.V587A	TGCAGGTGGAACA	.	76.0	4.0	197.0	0.0	.	330	.	.	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	hg19	12	111963044	111963044	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATXN2	NM_002973	exon6	c.A1128G	p.A376A	TTCACCTGCATCC	.	54.0	4.0	138.0	0.0	.	99	.	.	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123793921	123793921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SBNO1	NM_001167856	exon27	c.A3566G	p.E1189G	GCTTCCTCCCATG	.	91.0	5.0	181.0	0.0	.	138	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124305128	124305128	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAH10	NM_207437	exon23	c.A3648G	p.G1216G	ACTAGGAGTAGAG	.	63.0	4.0	155.0	0.0	.	888	.	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	128899651	128899651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM132C	NM_001136103	exon2	c.A460G	p.M154V	CACATCATGGGCA	.	51.0	6.0	150.0	0.0	.	142	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129694080	129694080	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM132D	NM_133448	exon5	c.T1428C	p.D476D	GTCTTCATCAGAC	.	73.0	4.0	230.0	0.0	.	299	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24874603	24874603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPATA13	NM_001166271	exon12	c.A3648G	p.G1216G	ACATGGAAAGTCA	.	98.0	4.0	161.0	0.0	.	92	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25266933	25266933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATP12A	NM_001185085	exon10	c.T1294C	p.F432L	CAAGTCTTTGACC	.	98.0	4.0	152.0	0.0	.	172	.	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26114518	26114518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ATP8A2,colon,carcinoma,0,1	ATP8A2	NM_016529	exon8	c.A643G	p.I215V	CTTAAAATACGTC	.	123.0	5.0	221.0	2.0	.	181	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32911477	32911477	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	BRCA2_ENST00000544455,NS,carcinoma,0,2	BRCA2	NM_000059	exon11	c.A2985G	p.G995G	GGCAGGACTCTTA	.	71.0	3.0	140.0	0.0	.	812	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103397021	103397021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001146197	exon4	c.C6026T	p.T2009I	TGATGTGTACTGA	.	98.0	52.0	150.0	0.0	.	.	.	.	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	hg19	13	103525646	103525646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001204425	exon22	c.A4279G	p.T1427A	ACGAAGACAGATG	.	94.0	4.0	130.0	0.0	.	.	.	.	Atlas-SNP
RNASE7	84659	hgsc.bcm.edu	hg19	14	21511444	21511444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RNASE7	NM_032572	exon2	c.A293G	p.H98R	ACTGCCACCAGAG	.	69.0	4.0	118.0	0.0	.	18	.	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	hg19	14	21544999	21544999	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARHGEF40	NM_018071	exon8	c.T1984C	p.L662L	TGGGAGTTAGGAG	.	89.0	4.0	168.0	0.0	.	84	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23551018	23551018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACIN1	NM_001164814	exon5	c.A638G	p.K213R	TCACCTTTCTCTT	.	77.0	4.0	121.0	0.0	.	147	.	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	hg19	14	29237096	29237096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FOXG1	NM_005249	exon1	c.T611C	p.L204P	TCACGCTCAACGG	.	120.0	5.0	175.0	0.0	.	92	.	.	Atlas-SNP
SLC25A21	89874	hgsc.bcm.edu	hg19	14	37283153	37283153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC25A21	NM_030631	exon3	c.A173G	p.D58G	AAGCTGTCTACCA	.	82.0	4.0	115.0	0.0	.	24	.	.	Atlas-SNP
CDKN3	1033	hgsc.bcm.edu	hg19	14	54878223	54878223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDKN3	NM_005192	exon5	c.T215C	p.I72T	GTGGTATACAAGA	.	42.0	27.0	84.0	0.0	.	9	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65241871	65241871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPTB	NM_001024858	exon22	c.T4814C	p.L1605P	ACGTAGAGCTCCT	.	87.0	4.0	105.0	0.0	.	378	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75514922	75514922	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	MLH3_ENST00000355774,right_upper_lobe,carcinoma,0,2	MLH3	NM_014381	exon2	c.A1437G	p.S479S	AGCTTCTGATGCT	.	81.0	4.0	130.0	0.0	.	200	.	.	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	hg19	14	81956767	81956767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SEL1L	NM_005065	exon13	c.A1297G	p.T433A	GAGCTGTCTCATT	.	94.0	4.0	137.0	0.0	.	67	.	.	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	hg19	14	92474090	92474090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TRIP11	NM_004239	exon10	c.T1421C	p.L474P	AAATTAAGTCTTA	.	95.0	4.0	155.0	0.0	.	184	.	.	Atlas-SNP
UBR7	55148	hgsc.bcm.edu	hg19	14	93678456	93678456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	UBR7,rectum,carcinoma,0,1	UBR7	NM_175748	exon4	c.C424T	p.P142S	CCTTATCCTGATC	.	44.0	2.0	70.0	0.0	.	36	.	.	Atlas-SNP
BTBD7	55727	hgsc.bcm.edu	hg19	14	93709383	93709383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BTBD7	NM_001002860	exon11	c.T2635C	p.S879P	GTGTGGACACACC	.	116.0	5.0	171.0	0.0	.	112	.	.	Atlas-SNP
IFI27	3429	hgsc.bcm.edu	hg19	14	94582130	94582130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	IFI27,colon,carcinoma,0,16	IFI27	NM_005532	exon4	c.T125C	p.V42A	CAGTTGTGGCTGT	.	27.0	2.0	48.0	0.0	.	39	.	.	Atlas-SNP
SERPINA10	51156	hgsc.bcm.edu	hg19	14	94752493	94752493	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SERPINA10	NM_001100607	exon4	c.T1095C	p.A365A	AAGGTCAGCAAAG	.	89.0	4.0	171.0	0.0	.	83	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96798729	96798729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon10	c.G1381T	p.E461X	GGAACTCTCCCCA	.	226.0	84.0	367.0	1.0	.	169	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96809538	96809538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATG2B	NM_018036	exon5	c.T662C	p.L221P	AGCTGAAGTAACT	.	94.0	4.0	153.0	0.0	.	169	.	.	Atlas-SNP
PAPOLA	10914	hgsc.bcm.edu	hg19	14	97022280	97022280	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PAPOLA	NM_032632	exon18	c.A1761G	p.S587S	AAGCTCAGGGGGT	.	113.0	5.0	177.0	0.0	.	58	.	.	Atlas-SNP
CCNK	8812	hgsc.bcm.edu	hg19	14	99968554	99968554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CCNK	NM_001099402	exon7	c.A586G	p.T196A	TGCACCACCTTGT	.	82.0	4.0	119.0	0.0	.	32	.	.	Atlas-SNP
WARS	7453	hgsc.bcm.edu	hg19	14	100808883	100808883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	WARS	NM_004184	exon9	c.A965G	p.D322G	GCGACGTCCCTTG	.	121.0	5.0	180.0	0.0	.	37	.	.	Atlas-SNP
RCOR1	23186	hgsc.bcm.edu	hg19	14	103148307	103148307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RCOR1	NM_015156	exon3	c.A437G	p.E146G	TGTCAGAAGCAAA	.	72.0	4.0	109.0	0.0	.	39	.	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	hg19	14	104431724	104431724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TDRD9	NM_153046	exon4	c.A475G	p.S159G	ACGGGAAGCGGTA	.	90.0	4.0	126.0	0.0	.	175	.	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	hg19	14	105350781	105350781	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001112726	exon9	c.A1665G	p.A555A	CAAGGCACGGAAA	.	50.0	4.0	78.0	0.0	.	.	.	.	Atlas-SNP
TUBGCP5	114791	hgsc.bcm.edu	hg19	15	22869927	22869927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TUBGCP5	NM_052903	exon21	c.A2851G	p.K951E	TTTGTGAAAGAAG	.	121.0	5.0	153.0	0.0	.	82	.	.	Atlas-SNP
NDN	4692	hgsc.bcm.edu	hg19	15	23931977	23931977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	NDN,NS,carcinoma,0,1	NDN	NM_002487	exon1	c.G388A	p.G130S	AGCTGCCGATGAC	.	47.0	3.0	100.0	0.0	.	79	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33922201	33922201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RYR3	NM_001243996	exon22	c.A2740G	p.T914A	CCAGAAACTGAGA	.	81.0	4.0	125.0	0.0	.	760	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35166047	35166047	+	Silent	SNP	A	A	G	rs368882712		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AQR	NM_014691	exon30	c.T3579C	p.P1193P	AGGATTAGGTTCA	.	83.0	4.0	122.0	0.0	.	139	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35167042	35167042	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AQR	NM_014691	exon29	c.A3261G	p.R1087R	TTTTAGTCGGCTA	.	73.0	4.0	117.0	0.0	.	139	.	.	Atlas-SNP
C15orf41	84529	hgsc.bcm.edu	hg19	15	36989565	36989565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C15orf41	NM_001130010	exon8	c.T518C	p.L173P	ACTTGCTTCTAGA	.	150.0	6.0	210.0	0.0	.	24	.	.	Atlas-SNP
CHST14	113189	hgsc.bcm.edu	hg19	15	40764276	40764276	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHST14	NM_130468	exon1	c.T864C	p.P288P	CCAGCCTTGTGCC	.	77.0	4.0	155.0	0.0	.	19	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41799394	41799394	+	Silent	SNP	G	G	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LTK	NM_002344	exon11	c.C1440G	p.A480A	ATTGGGGGCTGTC	.	77.0	35.0	117.0	0.0	.	117	.	.	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	hg19	15	45401796	45401796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DUOX2	NM_014080	exon11	c.T1160C	p.V387A	TCATTCACCTCCT	.	77.0	4.0	142.0	0.0	.	137	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49090248	49090248	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CEP152	NM_014985	exon3	c.T88C	p.L30L	GCTGCAACTGAGT	.	55.0	4.0	97.0	0.0	.	145	.	.	Atlas-SNP
SHC4	399694	hgsc.bcm.edu	hg19	15	49176517	49176517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SHC4	NM_203349	exon4	c.G768T	p.Q256H	TGAAAACTGAAGA	.	67.0	6.0	117.0	0.0	.	70	.	.	Atlas-SNP
AP4E1	23431	hgsc.bcm.edu	hg19	15	51289911	51289911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP4E1	NM_007347	exon18	c.A2735G	p.E912G	CTACTGAATACAT	.	44.0	4.0	85.0	0.0	.	78	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54825124	54825124	+	Silent	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC13C	NM_001080534	exon24	c.T5556A	p.V1852V	CCAGGTTATAATT	.	55.0	18.0	96.0	0.0	.	674	.	.	Atlas-SNP
ALDH1A2	8854	hgsc.bcm.edu	hg19	15	58306387	58306387	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ALDH1A2	NM_003888	exon2	c.A210G	p.Q70Q	TGCTTCTTGAACT	.	102.0	5.0	191.0	0.0	.	69	.	.	Atlas-SNP
ADAM10	102	hgsc.bcm.edu	hg19	15	58919930	58919930	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ADAM10	NM_001110	exon10	c.T1329C	p.V443V	CTCAAGAACTTGG	.	90.0	4.0	118.0	0.0	.	59	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62214150	62214150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	VPS13C	NM_020821	exon55	c.T7058C	p.L2353P	ACATCAAGCCTTA	.	96.0	4.0	141.0	0.0	.	506	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63966643	63966643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HERC1	NM_003922	exon38	c.A7744G	p.R2582G	ATGCTCTCTTTAT	.	84.0	4.0	200.0	0.0	.	624	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	64039146	64039146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HERC1	NM_003922	exon12	c.G2491A	p.D831N	TTGAGTCCATCAG	.	98.0	4.0	141.0	0.0	.	624	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	65968921	65968921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DENND4A	NM_001144823	exon24	c.G4228C	p.E1410Q	TAGATTCAGAATC	.	120.0	5.0	181.0	0.0	.	217	.	.	Atlas-SNP
NOX5	79400	hgsc.bcm.edu	hg19	15	69341315	69341315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NOX5	NM_024505	exon14	c.T1916C	p.I639T	TCTGGATCAACAG	.	72.0	4.0	94.0	0.0	.	60	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77473310	77473310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_024776	exon5	c.A959G	p.Y320C	TCCTCATAACCAT	.	89.0	4.0	155.0	0.0	.	.	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77473962	77473962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_024776	exon5	c.G307C	p.G103R	TCCACCCTATGAT	.	124.0	44.0	197.0	0.0	.	.	.	.	Atlas-SNP
SH2D7	646892	hgsc.bcm.edu	hg19	15	78393469	78393469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SH2D7	NM_001101404	exon5	c.C874T	p.P292S	AACAGGCCTGATG	.	67.0	43.0	115.0	0.0	.	26	.	.	Atlas-SNP
HDGFRP3	0	hgsc.bcm.edu	hg19	15	83832756	83832756	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	HDGFRP3	NM_016073	exon2	c.T156C	p.H52H	CGTTTCATGGGTG	.	85.0	4.0	101.0	0.0	.	17	.	.	Atlas-SNP
POLG	5428	hgsc.bcm.edu	hg19	15	89864157	89864157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	POLG	NM_002693	exon18	c.A2821G	p.I941V	GGCTGATGCCCAC	.	50.0	4.0	136.0	0.0	.	75	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94882652	94882652	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	MCTP2,NS,carcinoma,0,1	MCTP2	NM_001159643	exon4	c.A771G	p.L257L	AAAGCTACGTGTG	.	48.0	2.0	96.0	0.0	.	122	.	.	Atlas-SNP
DECR2	26063	hgsc.bcm.edu	hg19	16	457501	457501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	DECR2_ENST00000397710,NS,carcinoma,0,2	DECR2	NM_020664	exon4	c.T278C	p.V93A	CAGCTGTCATGGC	.	49.0	2.0	164.0	1.0	.	47	.	.	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2107122	2107122	+	Missense_Mutation	SNP	T	T	G	rs45517131	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TSC2	NM_001114382	exon9	c.T791G	p.L264R	ACCTCCTTGGCAC	.	92.0	5.0	251.0	0.0	.	364	.	.	Atlas-SNP
METTL22	79091	hgsc.bcm.edu	hg19	16	8735035	8735035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	METTL22	NM_024109	exon7	c.T820C	p.C274R	GACCTCTGCACAG	.	60.0	4.0	238.0	0.0	.	23	.	.	Atlas-SNP
ACSM1	116285	hgsc.bcm.edu	hg19	16	20638583	20638583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ACSM1	NM_052956	exon10	c.A1355G	p.D452G	CCTCTGTCCCCAG	.	63.0	4.0	204.0	0.0	.	118	.	.	Atlas-SNP
USP31	57478	hgsc.bcm.edu	hg19	16	23093795	23093795	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	USP31	NM_020718	exon12	c.T1914C	p.P638P	CACATCAGGCAGA	.	69.0	4.0	186.0	0.0	.	122	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24834278	24834278	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TNRC6A	NM_014494	exon24	c.T5457C	p.A1819A	AAATGCTCTGGTC	.	67.0	4.0	181.0	0.0	.	171	.	.	Atlas-SNP
CORO1A	11151	hgsc.bcm.edu	hg19	16	30199817	30199817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CORO1A	NM_007074	exon10	c.A1201G	p.S401G	CCAAAGAGCCGGG	.	89.0	4.0	224.0	0.0	.	36	.	.	Atlas-SNP
SIAH1	6477	hgsc.bcm.edu	hg19	16	48395979	48395979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	SIAH1_ENST00000356721,NS,malignant_melanoma,0,2	SIAH1	NM_001006610	exon2	c.T454C	p.C152R	ACTCACAGAGCTC	.	47.0	2.0	141.0	0.0	.	33	.	.	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	hg19	16	50367608	50367608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BRD7	NM_013263	exon8	c.G888T	p.K296N	GTCTTTCCTGAAA	.	50.0	35.0	131.0	0.0	.	61	.	.	Atlas-SNP
BRD7	29117	hgsc.bcm.edu	hg19	16	50367609	50367609	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	BRD7	NM_001173984	exon9	c.888-1G>A	.	TCTTTCCTGAAAA	.	49.0	35.0	129.0	0.0	.	61	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53496562	53496562	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RBL2	NM_005611	exon11	c.T1555C	p.L519L	ATGGATTTATCTG	.	65.0	4.0	181.0	0.0	.	115	.	.	Atlas-SNP
IRX5	10265	hgsc.bcm.edu	hg19	16	54966777	54966777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IRX5	NM_001252197	exon2	c.A617G	p.K206R	CCCAGAAGCCCGA	.	91.0	4.0	251.0	0.0	.	41	.	.	Atlas-SNP
TMED6	146456	hgsc.bcm.edu	hg19	16	69381728	69381728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMED6	NM_144676	exon3	c.A452G	p.E151G	TTTCTTTCCTTCT	.	123.0	6.0	381.0	0.0	.	19	.	.	Atlas-SNP
AP1G1	164	hgsc.bcm.edu	hg19	16	71779499	71779499	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon19	c.A1758G	p.R586R	AGGCATTCTCTCA	.	79.0	4.0	195.0	0.0	.	83	.	.	Atlas-SNP
AP1G1	164	hgsc.bcm.edu	hg19	16	71798318	71798318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AP1G1	NM_001030007	exon10	c.G862T	p.G288X	CATTTCCTACATT	.	85.0	65.0	255.0	0.0	.	83	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88505541	88505541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF469	NM_001127464	exon2	c.A11579G	p.K3860R	AGAGGAAGGACAG	.	57.0	4.0	192.0	0.0	.	121	.	.	Atlas-SNP
ARRB2	409	hgsc.bcm.edu	hg19	17	4624255	4624255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARRB2	NM_001257328	exon15	c.A1214G	p.D405G	CAGATGATGACAT	.	97.0	4.0	197.0	0.0	.	30	.	.	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6377793	6377793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PITPNM3	NM_031220	exon10	c.T1217G	p.L406R	AGGACCAGGCCCA	.	115.0	5.0	201.0	0.0	.	91	.	.	Atlas-SNP
ASGR2	433	hgsc.bcm.edu	hg19	17	7011175	7011175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASGR2	NM_080912	exon5	c.A404G	p.Q135R	TGCTGCTGTTTCT	.	120.0	6.0	195.0	0.0	.	38	.	.	Atlas-SNP
TMEM95	339168	hgsc.bcm.edu	hg19	17	7258602	7258602	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM95	NM_198154	exon1	c.T79C	p.L27L	CACGACTTGTCAG	.	68.0	5.0	123.0	0.0	.	11	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319654	21319654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001194958	exon3	c.G1000A	p.E334K	TTCGAGGAGAAGA	.	169.0	8.0	294.0	0.0	.	.	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29559883	29559883	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NF1	NM_000267	exon26	c.T3480C	p.G1160G	CAGTGGTCTCATG	.	71.0	4.0	120.0	0.0	.	1586	.	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	hg19	17	33495162	33495162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	UNC45B	NM_001267052	exon10	c.C1234G	p.L412V	TTTGACCTGGGCA	.	121.0	53.0	241.0	0.0	.	133	.	.	Atlas-SNP
KRTAP4-6	81871	hgsc.bcm.edu	hg19	17	39296198	39296198	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	KRTAP4-6	NM_030976	exon1	c.A542T	p.H181L	GTGGTGTGGCAGG	.	181.0	65.0	316.0	0.0	.	46	.	.	Atlas-SNP
DNAJC7	7266	hgsc.bcm.edu	hg19	17	40128753	40128753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DNAJC7	NM_003315	exon14	c.T1483C	p.X495Q	TTCATTAGCCAAA	.	72.0	4.0	140.0	0.0	.	51	.	.	Atlas-SNP
EZH1	2145	hgsc.bcm.edu	hg19	17	40857131	40857131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EZH1	NM_001991	exon17	c.A1910G	p.E637G	ATGAATTCGTTCT	.	97.0	5.0	135.0	0.0	.	62	.	.	Atlas-SNP
FMNL1	752	hgsc.bcm.edu	hg19	17	43317843	43317843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	FMNL1	NM_005892	exon12	c.A1081G	p.R361G	GGACAGAGGCTTC	.	81.0	4.0	151.0	0.0	.	78	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45247316	45247316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CDC27	NM_001114091	exon4	c.G344A	p.C115Y	GTAAAGCAAGCTG	.	60.0	4.0	84.0	0.0	.	337	.	.	Atlas-SNP
COL1A1	1277	hgsc.bcm.edu	hg19	17	48271982	48271982	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	COL1A1	NM_000088	exon22	c.A1467G	p.G489G	ACCAGGTCCACCC	.	47.0	4.0	108.0	0.0	.	158	.	.	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	hg19	17	51901304	51901304	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	KIF2B,colon,carcinoma,0,1	KIF2B	NM_032559	exon1	c.C910T	p.Q304X	TATGGGCAGACGG	.	61.0	3.0	121.0	0.0	.	254	.	.	Atlas-SNP
PRR11	55771	hgsc.bcm.edu	hg19	17	57262914	57262914	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PRR11	NM_018304	exon4	c.A393G	p.E131E	CCAGGAAGCACTG	.	99.0	4.0	177.0	0.0	.	36	.	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67119418	67119418	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ABCA6	NM_080284	exon10	c.A1398G	p.E466E	TACTGGTTCAAAA	.	59.0	4.0	77.0	0.0	.	210	.	.	Atlas-SNP
ABCA10	10349	hgsc.bcm.edu	hg19	17	67189275	67189275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ABCA10,NS,carcinoma,0,1	ABCA10	NM_080282	exon16	c.A1756G	p.M586V	CATCCATGAATTG	.	48.0	2.0	72.0	0.0	.	209	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71346476	71346476	+	Missense_Mutation	SNP	T	T	C	rs372386732	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SDK2	NM_001144952	exon43	c.A5938G	p.M1980V	TCATCATCTCGCT	.	90.0	4.0	154.0	0.0	.	219	.	.	Atlas-SNP
RAB37	326624	hgsc.bcm.edu	hg19	17	72741169	72741169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RAB37	NM_001163989	exon8	c.A527G	p.E176G	TCCTGGAGACCAG	.	87.0	4.0	171.0	0.0	.	69	.	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	hg19	18	2890914	2890914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EMILIN2	NM_032048	exon4	c.G789T	p.K263N	CATCAAGTCTGAA	.	38.0	19.0	52.0	0.0	.	97	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7034666	7034666	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LAMA1	NM_005559	exon14	c.A1863G	p.T621T	AGCCTGTGTGCTT	.	86.0	5.0	110.0	0.0	.	458	.	.	Atlas-SNP
SPIRE1	56907	hgsc.bcm.edu	hg19	18	12453068	12453068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SPIRE1	NM_001128626	exon14	c.A1846G	p.R616G	CTTACCTCTTACA	.	91.0	4.0	126.0	0.0	.	120	.	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14748609	14748609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ANKRD30B	NM_001145029	exon1	c.T191C	p.V64A	AGCCCGTCAACCT	.	77.0	4.0	135.0	0.0	.	237	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19100763	19100763	+	Missense_Mutation	SNP	A	A	C	rs201565664	bycluster	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GREB1L	NM_001142966	exon32	c.A5587C	p.K1863Q	GATCTTAAGAAAT	.	87.0	9.0	106.0	0.0	.	69	.	.	Atlas-SNP
SYT4	6860	hgsc.bcm.edu	hg19	18	40853607	40853607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SYT4	NM_020783	exon2	c.G787T	p.G263X	CAATTCCCGAGAG	.	131.0	57.0	217.0	0.0	.	162	.	.	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46906097	46906097	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DYM	NM_017653	exon4	c.T225C	p.G75G	TAGTGCACCAAGA	.	96.0	4.0	116.0	0.0	.	52	.	.	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1785272	1785272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ATP8B3	NM_138813	exon27	c.A3418G	p.T1140A	GGGCGGTCCAGTA	.	63.0	5.0	130.0	0.0	.	108	.	.	Atlas-SNP
REXO1	57455	hgsc.bcm.edu	hg19	19	1827477	1827477	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	REXO1	NM_020695	exon2	c.A1311G	p.P437P	CGAAGATGGCTTC	.	34.0	4.0	60.0	0.0	.	55	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9087298	9087298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MUC16	NM_024690	exon1	c.C4517T	p.T1506I	GCACTGGTATCTG	.	66.0	28.0	153.0	0.0	.	4315	.	.	Atlas-SNP
ICAM3	3385	hgsc.bcm.edu	hg19	19	10449552	10449552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ICAM3	NM_002162	exon2	c.T149C	p.F50S	TTCACAAACAGGG	.	69.0	6.0	101.0	0.0	.	29	.	.	Atlas-SNP
ZNF439	90594	hgsc.bcm.edu	hg19	19	11978999	11978999	+	Missense_Mutation	SNP	A	A	G	rs147858709	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ZNF439,upper_leg,malignant_melanoma,0,1	ZNF439	NM_152262	exon3	c.A1115G	p.H372R	AAAGACATGAAAA	.	46.0	3.0	65.0	0.0	.	67	.	.	Atlas-SNP
ZNF100	163227	hgsc.bcm.edu	hg19	19	21909685	21909685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ZNF100,NS,carcinoma,0,1	ZNF100	NM_173531	exon5	c.A1429G	p.M477V	GAATCATCTTATG	.	20.0	2.0	44.0	1.0	.	62	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23927409	23927409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF681	NM_138286	exon4	c.T943C	p.C315R	TGCCACATTCCTT	.	82.0	4.0	121.0	0.0	.	76	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38979854	38979854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RYR1	NM_001042723	exon35	c.T5585C	p.I1862T	AACAGATCTTGAA	.	75.0	4.0	134.0	0.0	.	708	.	.	Atlas-SNP
TMEM145	284339	hgsc.bcm.edu	hg19	19	42820704	42820704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMEM145	NM_173633	exon9	c.A718G	p.K240E	AGTGTGAAGATCT	.	100.0	4.0	254.0	0.0	.	55	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42866592	42866592	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MEGF8	NM_001271938	exon34	c.A5901G	p.G1967G	CATTGGACGCAAT	.	72.0	4.0	91.0	0.0	.	358	.	.	Atlas-SNP
PSG7	5676	hgsc.bcm.edu	hg19	19	43430131	43430131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001206650	exon4	c.C671A	p.S224X	TGTCCTGAATGGT	.	90.0	43.0	171.0	0.0	.	.	.	.	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44891202	44891202	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ZNF285,NS,carcinoma,0,2	ZNF285	NM_152354	exon4	c.G1205C	p.C402S	TCACTGCATTTGT	.	37.0	3.0	66.0	0.0	.	86	.	.	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44891217	44891217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ZNF285,NS,carcinoma,0,2	ZNF285	NM_152354	exon4	c.A1190G	p.E397G	GGCTTCTCTCCAG	.	35.0	3.0	67.0	0.0	.	86	.	.	Atlas-SNP
PVRL2	5819	hgsc.bcm.edu	hg19	19	45389426	45389426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PVRL2	NM_001042724	exon8	c.A1297G	p.S433G	GAGCACAGCCCAC	.	82.0	4.0	143.0	0.0	.	58	.	.	Atlas-SNP
GRIN2D	2906	hgsc.bcm.edu	hg19	19	48908506	48908506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GRIN2D	NM_000836	exon3	c.G981A	p.V327V	CGTAGTGGCCAGA	.	14.0	5.0	35.0	0.0	.	76	.	.	Atlas-SNP
DKKL1	27120	hgsc.bcm.edu	hg19	19	49868005	49868005	+	Silent	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DKKL1	NM_014419	exon2	c.C177T	p.F59F	ACTTTTCCTGAAA	.	91.0	4.0	160.0	0.0	.	23	.	.	Atlas-SNP
NUP62	23636	hgsc.bcm.edu	hg19	19	50412103	50412103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NUP62	NM_153719	exon3	c.G962A	p.G321E	GCCGCCCCTGCAG	.	39.0	13.0	95.0	0.0	.	50	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50775221	50775221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MYH14	NM_001145809	exon26	c.A3287G	p.D1096G	TCGCAGACATGGA	.	68.0	4.0	163.0	0.0	.	261	.	.	Atlas-SNP
ETFB	2109	hgsc.bcm.edu	hg19	19	51857546	51857546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	ETFB_ENST00000309244,NS,carcinoma,0,2	ETFB	NM_001014763	exon1	c.A347G	p.D116G	GTCCTGTCAGGCT	.	59.0	3.0	114.0	0.0	.	46	.	.	Atlas-SNP
NCR1	9437	hgsc.bcm.edu	hg19	19	55421416	55421416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NCR1	NM_001145458	exon5	c.A673G	p.T225A	GACCCCACCTTTC	.	80.0	4.0	158.0	0.0	.	60	.	.	Atlas-SNP
ZNF835	90485	hgsc.bcm.edu	hg19	19	57175497	57175497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF835	NM_001005850	exon2	c.C1070A	p.T357N	TCTCCGGTGTGCG	.	74.0	44.0	138.0	0.0	.	106	.	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	hg19	19	57326944	57326944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PEG3	NM_001146184	exon9	c.C2866A	p.P956T	CAAAAGGCAGAGA	.	119.0	43.0	283.0	0.0	.	414	.	.	Atlas-SNP
ZSCAN22	342945	hgsc.bcm.edu	hg19	19	58846297	58846297	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZSCAN22	NM_181846	exon2	c.T129C	p.A43A	CATTGCTCACTCT	.	93.0	4.0	131.0	0.0	.	47	.	.	Atlas-SNP
ZNF343	79175	hgsc.bcm.edu	hg19	20	2465247	2465247	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF343	NM_024325	exon6	c.T360C	p.C120C	CTGCTGACAGGAG	.	81.0	4.0	101.0	0.0	.	47	.	.	Atlas-SNP
TMC2	117532	hgsc.bcm.edu	hg19	20	2539363	2539363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TMC2	NM_080751	exon3	c.A344G	p.K115R	CCCCAAAGAGGGA	.	94.0	4.0	148.0	0.0	.	121	.	.	Atlas-SNP
PTPRA	5786	hgsc.bcm.edu	hg19	20	3017865	3017865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PTPRA	NM_002836	exon27	c.A2264G	p.E755G	AAGCAGAGGGGAT	.	87.0	5.0	171.0	0.0	.	75	.	.	Atlas-SNP
ASXL1	171023	hgsc.bcm.edu	hg19	20	31024706	31024706	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ASXL1	NM_015338	exon12	c.T4191C	p.G1397G	GGTGGGTCACTTG	.	58.0	5.0	138.0	0.0	.	1114	.	.	Atlas-SNP
E2F1	1869	hgsc.bcm.edu	hg19	20	32265257	32265257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	E2F1	NM_005225	exon5	c.A815T	p.Q272L	TGGAGCTGGGTCT	.	111.0	47.0	182.0	0.0	.	41	.	.	Atlas-SNP
LBP	3929	hgsc.bcm.edu	hg19	20	36974925	36974925	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	LBP	NM_004139	exon1	c.G6A	p.G2G	GATGGGGGCCTTG	.	56.0	25.0	80.0	0.0	.	60	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46275954	46275954	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NCOA3	NM_181659	exon18	c.A3390G	p.G1130G	TCAGGGACAATCA	.	90.0	52.0	178.0	0.0	.	156	.	.	Atlas-SNP
STAU1	6780	hgsc.bcm.edu	hg19	20	47740949	47740949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	STAU1	NM_017453	exon7	c.A785G	p.K262R	CTAGGCTTTACTC	.	65.0	4.0	112.0	0.0	.	54	.	.	Atlas-SNP
DPM1	8813	hgsc.bcm.edu	hg19	20	49571794	49571794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	DPM1,right_upper_lobe,carcinoma,0,1	DPM1	NM_003859	exon2	c.G190T	p.D64Y	CATCATCTATGAT	.	44.0	2.0	94.0	0.0	.	24	.	.	Atlas-SNP
CHODL	140578	hgsc.bcm.edu	hg19	21	19632556	19632556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHODL	NM_024944	exon4	c.C587T	p.T196I	ATCTTACAAATCA	.	59.0	4.0	92.0	0.0	.	54	.	.	Atlas-SNP
MORC3	23515	hgsc.bcm.edu	hg19	21	37747486	37747486	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MORC3	NM_015358	exon17	c.T2712C	p.A904A	GCTGGCTATGATT	.	71.0	4.0	83.0	0.0	.	78	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41455834	41455834	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon25	c.4231+1G>C	.	TTATTACCTCTGA	.	87.0	34.0	131.0	0.0	.	347	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41455835	41455835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DSCAM	NM_001271534	exon24	c.G4231T	p.G1411X	TATTACCTCTGAT	.	86.0	35.0	134.0	0.0	.	347	.	.	Atlas-SNP
PKNOX1	5316	hgsc.bcm.edu	hg19	21	44424541	44424541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	PKNOX1	NM_004571	exon2	c.A50C	p.Q17P	GGCAACAGGTGAG	.	85.0	4.0	117.0	0.0	.	40	.	.	Atlas-SNP
C21orf58	54058	hgsc.bcm.edu	hg19	21	47731472	47731472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	C21orf58	NM_058180	exon6	c.C619T	p.P207S	CAGGAGGCTGGGG	.	86.0	4.0	147.0	0.0	.	25	.	.	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	hg19	21	47910539	47910539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	DIP2A	NM_206891	exon3	c.A190G	p.N64D	GCAGAGAATAGAA	.	117.0	5.0	214.0	0.0	.	332	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19263298	19263298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CLTCL1	NM_001835	exon2	c.A98G	p.E33G	TCAGATTCCATGG	.	85.0	4.0	157.0	0.0	.	115	.	.	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	hg19	22	29130547	29130547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CHEK2	NM_145862	exon2	c.T163C	p.S55P	AGCTGGAGTGAGA	.	90.0	4.0	204.0	0.0	.	438	.	.	Atlas-SNP
RHBDD3	25807	hgsc.bcm.edu	hg19	22	29656351	29656351	+	Missense_Mutation	SNP	G	G	T	rs375477818	alternate_allele	TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	RHBDD3	NM_012265	exon6	c.C947A	p.A316E	CATGGTGCGCTCT	.	84.0	4.0	171.0	0.0	.	17	.	.	Atlas-SNP
SEC14L4	284904	hgsc.bcm.edu	hg19	22	30890136	30890136	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SEC14L4	NM_174977	exon8	c.580+1G>A	.	GGCTTACCTCGAA	.	91.0	4.0	185.0	0.0	.	43	.	.	Atlas-SNP
ELFN2	114794	hgsc.bcm.edu	hg19	22	37771035	37771035	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ELFN2	NM_052906	exon3	c.T540C	p.C180C	CAGCTCACACACC	.	94.0	4.0	160.0	0.0	.	89	.	.	Atlas-SNP
TAB1	10454	hgsc.bcm.edu	hg19	22	39824030	39824030	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TAB1	NM_153497	exon10	c.A1149G	p.A383A	AGCTGCAGGAGGA	.	63.0	4.0	91.0	0.0	.	36	.	.	Atlas-SNP
TUBGCP6	85378	hgsc.bcm.edu	hg19	22	50656199	50656199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	TUBGCP6	NM_020461	exon25	c.G5426A	p.R1809H	TTGATGCGCAGCA	.	61.0	4.0	176.0	0.0	.	132	.	.	Atlas-SNP
SCO2	9997	hgsc.bcm.edu	hg19	22	50962276	50962276	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SCO2	NM_001169111	exon2	c.T565C	p.L189L	GACCCAACAGTCT	.	93.0	4.0	180.0	0.0	.	38	.	.	Atlas-SNP
ARSE	415	hgsc.bcm.edu	hg19	X	2876322	2876322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ARSE	NM_000047	exon3	c.A178G	p.T60A	TCATGGTGTTGTT	.	67.0	5.0	207.0	0.0	.	43	.	.	Atlas-SNP
GPM6B	2824	hgsc.bcm.edu	hg19	X	13803853	13803853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	GPM6B	NM_001001995	exon3	c.T256C	p.S86P	CCCCGGAGAAGCA	.	119.0	5.0	352.0	0.0	.	46	.	.	Atlas-SNP
CXorf38	159013	hgsc.bcm.edu	hg19	X	40489973	40489973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	CXorf38	NM_144970	exon6	c.T854C	p.L285P	TTTCTAAGATCCT	.	67.0	4.0	199.0	0.0	.	29	.	.	Atlas-SNP
EFHC2	80258	hgsc.bcm.edu	hg19	X	44109537	44109537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	EFHC2	NM_025184	exon5	c.T761C	p.F254S	CACAAGAAGTAAT	.	60.0	4.0	184.0	0.0	.	81	.	.	Atlas-SNP
ZNF81	347344	hgsc.bcm.edu	hg19	X	47775710	47775710	+	Silent	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	ZNF81	NM_007137	exon5	c.T1665C	p.V555V	CTATGTTTGTGCT	.	86.0	4.0	211.0	0.0	.	60	.	.	Atlas-SNP
NHSL2	340527	hgsc.bcm.edu	hg19	X	71358563	71358563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	NHSL2	NM_001013627	exon6	c.T1165C	p.S389P	ACCTTCTCCACTT	.	107.0	5.0	318.0	0.0	.	148	.	.	Atlas-SNP
IL13RA1	3597	hgsc.bcm.edu	hg19	X	117874980	117874980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	IL13RA1	NM_001560	exon2	c.A89G	p.E30G	GAACAGAAACTCA	.	37.0	4.0	129.0	0.0	.	41	.	.	Atlas-SNP
SLC25A5	292	hgsc.bcm.edu	hg19	X	118604919	118604919	+	Silent	SNP	A	A	G	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SLC25A5	NM_001152	exon4	c.A795G	p.E265E	TGATGAAGGAGGC	.	94.0	4.0	283.0	0.0	.	33	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123654550	123654550	+	Silent	SNP	G	G	A	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	.	NM_001163278	exon18	c.C3118T	p.L1040L	TCCGTAGCAGGGT	.	79.0	56.0	325.0	1.0	.	.	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	364598	364598	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	AXIN1	NM_003502	exon3	c.965delA	p.E322fs	.	.	37.0	25.0	112.0	0.0	.	290	.	.	Atlas-Indel,Pindel
MDC1	9656	hgsc.bcm.edu	hg19	6	30680046	30680046	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	MDC1	NM_014641	exon5	c.1674delA	p.G558fs	.	.	214.0	41.0	245.0	0.0	.	218	.	.	Atlas-Indel,Pindel
SUPT16H	11198	hgsc.bcm.edu	hg19	14	21829290	21829311	+	Frame_Shift_Del	DEL	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	-	novel		TCGA-DD-A39Z-01A-11D-A20W-10	TCGA-DD-A39Z-11A-21D-A20W-10	TAATAATTCGGAAAGCATTCTG	TAATAATTCGGAAAGCATTCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b5d662f8-35c9-4f38-9e23-10cd6e522078	7dbbd52e-3044-4bd2-8839-4471df1bd1dc	.	SUPT16H	NM_007192	exon16	c.1856_1877del	p.619_626del	.	.	91.0	15.0	0.0	0.0	.	84	.	.	Pindel
