Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CALML6	163688	hgsc.bcm.edu	hg19	1	1847882	1847882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CALML6	NM_138705	exon3	c.A81G	p.T27T	GCAGACAGAGCGC	.	117.0	5.0	134.0	0.0	.	18	.	.	Atlas-SNP
EPHA2	1969	hgsc.bcm.edu	hg19	1	16475439	16475439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA2	NM_004431	exon3	c.T257C	p.V86A	CGGTACACCCAGT	.	121.0	5.0	105.0	0.0	.	102	.	.	Atlas-SNP
SLC9A1	6548	hgsc.bcm.edu	hg19	1	27428223	27428223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC9A1	NM_003047	exon10	c.A2030G	p.E677G	TTCTGCTCCAGCT	.	120.0	6.0	73.0	0.0	.	68	.	.	Atlas-SNP
PHACTR4	65979	hgsc.bcm.edu	hg19	1	28818190	28818190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHACTR4	NM_023923	exon11	c.T1937C	p.L646P	CTGAACTCCTTGC	.	118.0	5.0	109.0	0.0	.	64	.	.	Atlas-SNP
BAI2	576	hgsc.bcm.edu	hg19	1	32207725	32207725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	BAI2,NS,carcinoma,0,1	BAI2	NM_001703	exon8	c.C1346T	p.A449V	GGGCCCGCCACGC	.	139.0	61.0	88.0	0.0	.	128	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34011768	34011768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CSMD2,NS,carcinoma,0,2	CSMD2	NM_052896	exon56	c.G8537A	p.R2846H	CCCAAACGGATGC	.	114.0	45.0	106.0	0.0	.	946	.	.	Atlas-SNP
AGO4	192670	hgsc.bcm.edu	hg19	1	36291638	36291638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_017629	exon6	c.T737C	p.V246A	AGCGTGTCAAATT	.	118.0	5.0	93.0	0.0	.	.	.	.	Atlas-SNP
HEYL	26508	hgsc.bcm.edu	hg19	1	40105230	40105230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEYL	NM_014571	exon1	c.A68G	p.E23G	TGGCCCTCTTGGC	.	80.0	5.0	87.0	0.0	.	27	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62550289	62550289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INADL	NM_176877	exon33	c.T4346C	p.L1449P	TTGGTCTCAGCAT	.	110.0	5.0	108.0	0.0	.	179	.	.	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	hg19	1	66067119	66067119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LEPR	NM_001003680	exon9	c.A1039C	p.N347H	GGGTCTAATGTTT	.	79.0	28.0	66.0	0.0	.	284	.	.	Atlas-SNP
RPE65	6121	hgsc.bcm.edu	hg19	1	68896995	68896995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPE65	NM_000329	exon12	c.A1308G	p.G436G	GCCAAGTCCATAC	.	93.0	4.0	113.0	0.0	.	87	.	.	Atlas-SNP
IFI44	10561	hgsc.bcm.edu	hg19	1	79115893	79115893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFI44	NM_006417	exon2	c.A13G	p.T5A	GTGACAACTCGTT	.	141.0	6.0	117.0	0.0	.	55	.	.	Atlas-SNP
GBP5	115362	hgsc.bcm.edu	hg19	1	89729600	89729600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP5	NM_052942	exon9	c.G1181T	p.C394F	CGTTTACAAATGT	.	92.0	10.0	68.0	0.0	.	65	.	.	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	hg19	1	89847413	89847413	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBP6	NM_198460	exon7	c.C1032T	p.L344L	GAAGCTCCCCACA	.	221.0	9.0	173.0	0.0	.	87	.	.	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	hg19	1	114500897	114500897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIPK1	NM_198268	exon8	c.T1965C	p.C655C	AGTATGTCCACCT	.	122.0	5.0	99.0	0.0	.	195	.	.	Atlas-SNP
SPRR1A	6698	hgsc.bcm.edu	hg19	1	152957833	152957833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	SPRR1A,NS,carcinoma,0,1	SPRR1A	NM_001199828	exon2	c.C127A	p.P43T	TGCCACCCCAAGG	.	363.0	0.0	182.0	0.0	.	17	.	.	Atlas-SNP
OR10J5	127385	hgsc.bcm.edu	hg19	1	159505581	159505581	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR10J5	NM_001004469	exon1	c.T217A	p.Y73N	GTGTGTACACCGT	.	202.0	43.0	116.0	0.0	.	68	.	.	Atlas-SNP
UHMK1	127933	hgsc.bcm.edu	hg19	1	162473569	162473569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UHMK1	NM_175866	exon4	c.A779G	p.H260R	TTGATCACATATT	.	100.0	4.0	66.0	0.0	.	65	.	.	Atlas-SNP
SCYL3	57147	hgsc.bcm.edu	hg19	1	169839479	169839479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCYL3	NM_020423	exon6	c.T542C	p.L181P	TCTGGGAGAGTTG	.	122.0	5.0	64.0	0.0	.	116	.	.	Atlas-SNP
SERPINC1	462	hgsc.bcm.edu	hg19	1	173876589	173876589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SERPINC1	NM_000488	exon6	c.A1217G	p.E406G	CTCACCTCAAGAA	.	184.0	11.0	122.0	0.0	.	57	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176708893	176708893	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAPPA2	NM_020318	exon13	c.T3930C	p.S1310S	CCACTCTCTTGGT	.	124.0	5.0	60.0	0.0	.	665	.	.	Atlas-SNP
TOR1AIP1	26092	hgsc.bcm.edu	hg19	1	179887126	179887126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TOR1AIP1,leg,malignant_melanoma,0,1	TOR1AIP1	NM_001267578	exon10	c.G1507A	p.A503T	AACGCGGCCTTCA	.	237.0	0.0	150.0	1.0	.	58	.	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	hg19	1	198678836	198678836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRC	NM_002838	exon11	c.A1054G	p.K352E	GATAATAAAGAAA	.	186.0	129.0	86.0	0.0	.	229	.	.	Atlas-SNP
PPP1R12B	4660	hgsc.bcm.edu	hg19	1	202394742	202394742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP1R12B	NM_002481	exon4	c.A590G	p.Q197R	TGTTGCAGGATGC	.	164.0	8.0	93.0	0.0	.	100	.	.	Atlas-SNP
DTL	51514	hgsc.bcm.edu	hg19	1	212238257	212238257	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DTL	NM_016448	exon7	c.527-2A>G	.	TCTTTCAGATGGG	.	81.0	4.0	56.0	0.0	.	52	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216592004	216592004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	USH2A,NS,carcinoma,0,1	USH2A	NM_007123	exon3	c.C503G	p.T168R	TCTACTGTCTTTT	.	214.0	0.0	133.0	0.0	.	1168	.	.	Atlas-SNP
SUSD4	55061	hgsc.bcm.edu	hg19	1	223402546	223402546	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUSD4	NM_017982	exon6	c.C909A	p.I303I	TGATTTGATGCAG	.	234.0	67.0	149.0	0.0	.	82	.	.	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226923526	226923526	+	Missense_Mutation	SNP	G	G	A	rs149543375		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITPKB	NM_002221	exon2	c.C1634T	p.P545L	AGCTCCGGACTTG	.	132.0	46.0	72.0	0.0	.	158	.	G|1.000;A|0.000	Atlas-SNP
EDARADD	128178	hgsc.bcm.edu	hg19	1	236577581	236577581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EDARADD	NM_145861	exon3	c.G142A	p.D48N	ATTCAAGATACGG	.	164.0	55.0	75.0	0.0	.	31	.	.	Atlas-SNP
HEATR1	55127	hgsc.bcm.edu	hg19	1	236750749	236750749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEATR1	NM_018072	exon14	c.T1668A	p.N556K	CAGAAGATTTGAA	.	265.0	141.0	185.0	0.0	.	197	.	.	Atlas-SNP
TAF1B	9014	hgsc.bcm.edu	hg19	2	10045015	10045015	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TAF1B,NS,carcinoma,0,1	TAF1B	NM_005680	exon9	c.A835T	p.K279X	ATCTACAAAAAAA	.	45.0	0.0	43.0	0.0	.	62	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21263838	21263838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APOB	NM_000384	exon4	c.T355C	p.S119P	CCTCAGAGTTCTT	.	139.0	6.0	109.0	0.0	.	761	.	.	Atlas-SNP
HADHA	3030	hgsc.bcm.edu	hg19	2	26426951	26426951	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HADHA	NM_000182	exon12	c.A1200G	p.G400G	TTGCTGTCCTCGG	.	163.0	7.0	112.0	0.0	.	87	.	.	Atlas-SNP
TRMT61B	55006	hgsc.bcm.edu	hg19	2	29087914	29087914	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRMT61B	NM_017910	exon2	c.T771C	p.S257S	TCCACCAGAGCCT	.	88.0	4.0	86.0	0.0	.	28	.	.	Atlas-SNP
SLC30A6	55676	hgsc.bcm.edu	hg19	2	32417462	32417462	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC30A6	NM_001193513	exon7	c.A462G	p.G154G	GTTGGGAGCTCTC	.	93.0	4.0	95.0	0.0	.	37	.	.	Atlas-SNP
EML4	27436	hgsc.bcm.edu	hg19	2	42544610	42544610	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML4	NM_019063	exon19	c.C2100T	p.Y700Y	TATTTACCTCTAT	.	98.0	4.0	88.0	0.0	.	92	.	.	Atlas-SNP
SRBD1	55133	hgsc.bcm.edu	hg19	2	45812867	45812867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SRBD1	NM_018079	exon5	c.T695C	p.I232T	CGAATGATGTTGG	.	75.0	4.0	58.0	0.0	.	107	.	.	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	hg19	2	48027194	48027194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MSH6	NM_000179	exon4	c.T2072C	p.L691P	TCTACCTCAAAAA	.	95.0	4.0	81.0	0.0	.	341	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54128608	54128608	+	Missense_Mutation	SNP	G	G	C	rs369867748	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSME4	NM_014614	exon28	c.C3164G	p.A1055G	ACAATCGCTGGCC	.	106.0	43.0	93.0	0.0	.	247	.	.	Atlas-SNP
PSME4	23198	hgsc.bcm.edu	hg19	2	54133824	54133824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSME4	NM_014614	exon26	c.A2854G	p.T952A	TTAGTGTCCGTAG	.	95.0	4.0	91.0	0.0	.	247	.	.	Atlas-SNP
C2orf42	54980	hgsc.bcm.edu	hg19	2	70402864	70402864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf42	NM_017880	exon5	c.G980A	p.S327N	AGATTACTGCTCA	.	117.0	43.0	120.0	0.0	.	30	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73653590	73653590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALMS1	NM_015120	exon6	c.A1247G	p.Q416R	GCCTGCAGGGGAA	.	158.0	7.0	131.0	0.0	.	384	.	.	Atlas-SNP
POLR1A	25885	hgsc.bcm.edu	hg19	2	86297358	86297358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLR1A	NM_015425	exon13	c.T1649C	p.L550P	CGGTTCAGTAGCA	.	186.0	9.0	139.0	0.0	.	137	.	.	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	hg19	2	98351044	98351044	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZAP70	NM_001079	exon9	c.C951T	p.S317S	TGAGAGCCCCTAC	.	99.0	4.0	80.0	0.0	.	77	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109392277	109392277	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RANBP2	NM_006267	exon24	c.A8382G	p.E2794E	ATCTGAAGAACCT	.	96.0	4.0	83.0	0.0	.	488	.	.	Atlas-SNP
TMEM87B	84910	hgsc.bcm.edu	hg19	2	112839016	112839016	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM87B	NM_032824	exon8	c.A759G	p.A253A	GATTGCAGCTGTT	.	117.0	5.0	95.0	0.0	.	52	.	.	Atlas-SNP
LCT	3938	hgsc.bcm.edu	hg19	2	136594658	136594658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCT	NM_002299	exon1	c.T82C	p.F28L	AAATGAAATTTCT	.	94.0	42.0	68.0	0.0	.	309	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141739764	141739764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP1B	NM_018557	exon18	c.A2852G	p.D951G	CCACAGTCGTCTT	.	120.0	5.0	89.0	0.0	.	1315	.	.	Atlas-SNP
ARL5A	26225	hgsc.bcm.edu	hg19	2	152668893	152668893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARL5A	NM_012097	exon4	c.T317C	p.L106P	TTATAGAGTTCTT	.	143.0	6.0	84.0	0.0	.	12	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160661583	160661583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LY75	NM_002349	exon35	c.A5141G	p.E1714G	ATAATCTCATCTT	.	97.0	4.0	86.0	0.0	.	151	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166866301	166866301	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN1A	NM_001165963	exon20	c.A3930G	p.G1310G	GATGGCTCCAAGT	.	96.0	4.0	61.0	0.0	.	641	.	.	Atlas-SNP
ABCB11	8647	hgsc.bcm.edu	hg19	2	169874628	169874628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCB11	NM_003742	exon2	c.A8G	p.D3G	ACTGAGTCAGACA	.	82.0	4.0	50.0	0.0	.	136	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179560924	179560924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon114	c.T30875C	p.V10292A	TTCTGAACCTCTT	.	99.0	4.0	67.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179579232	179579232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon91	c.A26269G	p.T8757A	TGGTAGTCTGCAG	.	93.0	4.0	98.0	0.0	.	18412	.	.	Atlas-SNP
INPP1	3628	hgsc.bcm.edu	hg19	2	191233941	191233941	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INPP1	NM_002194	exon5	c.A579G	p.T193T	ACAGACAGGGGTT	.	145.0	6.0	107.0	0.0	.	29	.	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	hg19	2	198950766	198950766	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCL1	NM_006226	exon2	c.T2525A	p.F842Y	CCCTTTTTGTCCA	.	205.0	78.0	164.0	0.0	.	358	.	.	Atlas-SNP
C2orf47	79568	hgsc.bcm.edu	hg19	2	200824539	200824539	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf47	NM_024520	exon4	c.T585C	p.A195A	CCTTGCTGCTAAC	.	95.0	4.0	71.0	0.0	.	20	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207162017	207162017	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZDBF2	NM_020923	exon4	c.T108C	p.R36R	TAGACGTCAAATA	.	134.0	6.0	116.0	0.0	.	531	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212537944	212537944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERBB4	NM_001042599	exon14	c.A1661G	p.E554G	TCACACTCCACAC	.	108.0	6.0	80.0	0.0	.	480	.	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	hg19	2	217329366	217329366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCAL1	NM_014140	exon13	c.C2117T	p.A706V	GAACAGCTGAAGC	.	91.0	4.0	70.0	0.0	.	93	.	.	Atlas-SNP
USP37	57695	hgsc.bcm.edu	hg19	2	219353045	219353045	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP37	NM_020935	exon15	c.T1572C	p.S524S	ATCAAGAGAATCT	.	158.0	9.0	119.0	0.0	.	76	.	.	Atlas-SNP
PTPRN	5798	hgsc.bcm.edu	hg19	2	220159739	220159739	+	Missense_Mutation	SNP	T	T	C	rs376114976		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRN	NM_002846	exon19	c.A2633G	p.E878G	GTGCCCTCTGCCG	.	105.0	5.0	117.0	0.0	.	138	.	.	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	hg19	2	228174007	228174007	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL4A3	NM_000091	exon50	c.T4728C	p.S1576S	GATTTCTCTCTGG	.	112.0	5.0	134.0	0.0	.	293	.	.	Atlas-SNP
FBXO36	130888	hgsc.bcm.edu	hg19	2	230861591	230861591	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO36	NM_174899	exon3	c.T330C	p.D110D	TCTGGATCTTGAA	.	223.0	10.0	165.0	0.0	.	22	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233113947	233113947	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIS3L2	NM_152383	exon12	c.1318-2A>G	.	ATTTACAGGTGGT	.	125.0	5.0	114.0	0.0	.	77	.	.	Atlas-SNP
UGT1A5	54579	hgsc.bcm.edu	hg19	2	234622002	234622002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UGT1A5	NM_019078	exon1	c.T365C	p.L122S	TGTCTTTGATCAT	.	232.0	89.0	179.0	0.0	.	66	.	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240274391	240274391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDAC4	NM_006037	exon2	c.A4G	p.S2G	GGGAGCTCATTGC	.	110.0	5.0	88.0	0.0	.	127	.	.	Atlas-SNP
PPP1R7	5510	hgsc.bcm.edu	hg19	2	242089946	242089946	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP1R7	NM_002712	exon1	c.G36A	p.S12S	ACAGTCGCAGGAG	.	78.0	4.0	93.0	0.0	.	35	.	.	Atlas-SNP
XYLB	9942	hgsc.bcm.edu	hg19	3	38417621	38417621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XYLB	NM_005108	exon13	c.T1018C	p.S340P	AATGGCTCCCTCA	.	128.0	8.0	129.0	0.0	.	50	.	.	Atlas-SNP
CCR5	1234	hgsc.bcm.edu	hg19	3	46415316	46415316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCR5	NM_000579	exon3	c.T923C	p.L308P	ACTACCTCTTAGT	.	96.0	5.0	76.0	0.0	.	128	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47168143	47168143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETD2	NM_014159	exon2	c.A82G	p.N28D	CCTCATTTTCTTC	.	35.0	4.0	33.0	0.0	.	721	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49722912	49722912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MST1	NM_020998	exon12	c.A1415C	p.D472A	GGGGGGTCCAGGA	.	488.0	30.0	304.0	0.0	.	84	.	.	Atlas-SNP
NEK4	6787	hgsc.bcm.edu	hg19	3	52775439	52775439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK4	NM_003157	exon13	c.A2081G	p.D694G	CCGTAATCCCCAT	.	91.0	4.0	71.0	0.0	.	51	.	.	Atlas-SNP
RFT1	91869	hgsc.bcm.edu	hg19	3	53125923	53125923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	RFT1,colon,carcinoma,0,1	RFT1	NM_052859	exon13	c.C1622G	p.T541R	AGTCATGTCATTT	.	228.0	0.0	235.0	0.0	.	34	.	.	Atlas-SNP
CCDC66	285331	hgsc.bcm.edu	hg19	3	56651451	56651451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC66	NM_001141947	exon14	c.T2155C	p.Y719H	GAAAAGTACCCTA	.	100.0	4.0	96.0	0.0	.	145	.	.	Atlas-SNP
ZNF717	100131827	hgsc.bcm.edu	hg19	3	75786761	75786761	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,4	ZNF717	NM_001128223	exon5	c.G2013A	p.G671G	GTTTTTCCCCGTG	.	16.0	3.0	14.0	0.0	.	160	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89521694	89521694	+	Missense_Mutation	SNP	G	G	C	rs150555764	bycluster;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	EPHA3,NS,carcinoma,-1,1	EPHA3	NM_005233	exon16	c.G2771C	p.W924S	GTGTCTGGACAGC	.	206.0	0.0	144.0	0.0	.	501	.	G|1.000;A|0.000	Atlas-SNP
PHLDB2	90102	hgsc.bcm.edu	hg19	3	111639163	111639163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHLDB2	NM_001134437	exon6	c.A1979G	p.Q660R	GAGAACAGAAATC	.	108.0	5.0	81.0	0.0	.	449	.	.	Atlas-SNP
GCSAM	257144	hgsc.bcm.edu	hg19	3	111842506	111842506	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001190259	exon6	c.C339T	p.P113P	TTTGCAGGGAACA	.	271.0	90.0	217.0	0.0	.	.	.	.	Atlas-SNP
SPICE1	152185	hgsc.bcm.edu	hg19	3	113188037	113188037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPICE1	NM_144718	exon8	c.G660T	p.L220F	AGTCCACAACTTA	.	158.0	55.0	142.0	0.0	.	130	.	.	Atlas-SNP
ATP6V1A	523	hgsc.bcm.edu	hg19	3	113514007	113514007	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP6V1A	NM_001690	exon10	c.T1182C	p.C394C	GAAATGTCTTGGA	.	90.0	4.0	75.0	0.0	.	71	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121416461	121416461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GOLGB1	NM_001256486	exon13	c.A2909G	p.E970G	CTCATCTCATCAT	.	57.0	4.0	58.0	0.0	.	319	.	.	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124578237	124578237	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGB5	NM_002213	exon3	c.C213T	p.V71V	ATTTTTGACAAGG	.	226.0	87.0	165.0	0.0	.	66	.	.	Atlas-SNP
RHO	6010	hgsc.bcm.edu	hg19	3	129251109	129251109	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RHO	NM_000539	exon3	c.C546T	p.G182G	CGAGGGCCTGCAG	.	203.0	92.0	172.0	0.0	.	57	.	.	Atlas-SNP
PPP2R3A	5523	hgsc.bcm.edu	hg19	3	135721003	135721003	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP2R3A	NM_002718	exon2	c.T663C	p.D221D	AATAGATAATTTT	.	34.0	14.0	34.0	0.0	.	114	.	.	Atlas-SNP
DZIP1L	199221	hgsc.bcm.edu	hg19	3	137790628	137790628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DZIP1L	NM_001170538	exon13	c.T1472C	p.L491P	ACTCTCAGCAGGG	.	89.0	4.0	83.0	0.0	.	88	.	.	Atlas-SNP
CEP70	80321	hgsc.bcm.edu	hg19	3	138227297	138227297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP70	NM_024491	exon12	c.A1034G	p.D345G	CTCTGGTCAATTA	.	256.0	11.0	191.0	0.0	.	51	.	.	Atlas-SNP
CPA3	1359	hgsc.bcm.edu	hg19	3	148599385	148599385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPA3	NM_001870	exon7	c.T653C	p.F218S	CTGTGTTCAATGT	.	96.0	4.0	72.0	0.0	.	75	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151176327	151176327	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF10	NM_178822	exon1	c.C171A	p.P57P	CACATTGGGCGGG	.	244.0	17.0	192.0	0.0	.	279	.	.	Atlas-SNP
MME	4311	hgsc.bcm.edu	hg19	3	154802867	154802867	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MME	NM_007287	exon3	c.A180G	p.S60S	GTCATCAGACTGC	.	196.0	8.0	177.0	0.0	.	133	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	155861084	155861084	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNAB1	NM_003471	exon1	c.T117C	p.P39P	TCAGCCTCAGGCG	.	169.0	7.0	110.0	0.0	.	176	.	.	Atlas-SNP
LXN	56925	hgsc.bcm.edu	hg19	3	158387376	158387376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LXN	NM_020169	exon3	c.T216C	p.A72A	TACTTCAGCTGTG	.	145.0	6.0	122.0	0.0	.	14	.	.	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	hg19	3	161221375	161221375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OTOL1	NM_001080440	exon4	c.T1079C	p.I360T	TCCCCATCAAATT	.	121.0	5.0	64.0	0.0	.	63	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164735840	164735840	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SI	NM_001041	exon29	c.C3438T	p.S1146S	TCCATAGGAATTA	.	99.0	4.0	76.0	0.0	.	500	.	.	Atlas-SNP
LRRC31	79782	hgsc.bcm.edu	hg19	3	169566057	169566057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC31	NM_024727	exon8	c.T1178C	p.L393P	GCAGAGAGGTGAA	.	100.0	5.0	72.0	0.0	.	66	.	.	Atlas-SNP
NAALADL2	254827	hgsc.bcm.edu	hg19	3	175181236	175181236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALADL2	NM_207015	exon7	c.A1282G	p.T428A	TTGAAAACAGTTA	.	61.0	4.0	46.0	0.0	.	86	.	.	Atlas-SNP
HRG	3273	hgsc.bcm.edu	hg19	3	186390578	186390578	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HRG	NM_000412	exon5	c.A561G	p.R187R	CTAGAGAGGAGGG	.	94.0	5.0	84.0	0.0	.	81	.	.	Atlas-SNP
RFC4	5984	hgsc.bcm.edu	hg19	3	186507957	186507957	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RFC4	NM_181573	exon10	c.A970T	p.K324X	TAGACTTCTGTTT	.	160.0	61.0	148.0	0.0	.	54	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193029641	193029641	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP13A5	NM_198505	exon20	c.A2409G	p.Q803Q	TATCACTTGGTAT	.	98.0	4.0	80.0	0.0	.	171	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195498669	195498669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC4	NM_018406	exon5	c.A13096G	p.I4366V	AGATGATCTGGCC	.	87.0	5.0	77.0	0.0	.	1505	.	.	Atlas-SNP
TNIP2	79155	hgsc.bcm.edu	hg19	4	2749657	2749657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNIP2	NM_024309	exon2	c.A292G	p.T98A	GCTCAGTCAGCCT	.	95.0	4.0	69.0	0.0	.	28	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5664909	5664909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EVC2	NM_147127	exon9	c.A1070G	p.D357G	GAAAGGTCCTCAT	.	87.0	4.0	84.0	0.0	.	202	.	.	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8230126	8230126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3TC1	NM_018986	exon12	c.A2705G	p.Q902R	GGAACCAGGCAGT	.	75.0	5.0	86.0	0.0	.	105	.	.	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8230236	8230236	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH3TC1	NM_018986	exon12	c.G2815C	p.G939R	CCCCTTGGGGAGT	.	141.0	6.0	164.0	0.0	.	105	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13582665	13582665	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_148894	exon21	c.A8682G	p.K2894K	ATCTGTTTTGGAG	.	83.0	4.0	78.0	0.0	.	.	.	.	Atlas-SNP
PI4K2B	55300	hgsc.bcm.edu	hg19	4	25254053	25254053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PI4K2B	NM_018323	exon2	c.T379C	p.S127P	AGAATCTCTCAAG	.	113.0	6.0	86.0	0.0	.	42	.	.	Atlas-SNP
N4BP2	55728	hgsc.bcm.edu	hg19	4	40121838	40121838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	N4BP2	NM_018177	exon9	c.A2107G	p.I703V	GAGCAAATAGAAA	.	50.0	4.0	48.0	0.0	.	166	.	.	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	hg19	4	49063874	49063874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CWH43	NM_025087	exon16	c.T2067A	p.H689Q	CCATCATTTTCAT	.	157.0	7.0	92.0	0.0	.	101	.	.	Atlas-SNP
TMPRSS11B	132724	hgsc.bcm.edu	hg19	4	69100333	69100333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS11B	NM_182502	exon5	c.C317T	p.A106V	CCATTGGCATTAG	.	134.0	6.0	112.0	0.0	.	66	.	.	Atlas-SNP
ART3	419	hgsc.bcm.edu	hg19	4	77003227	77003227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ART3	NM_001130017	exon3	c.A320G	p.E107G	CTCAAGAGCAAAC	.	78.0	4.0	52.0	0.0	.	34	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79239975	79239975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FRAS1	NM_001166133	exon18	c.T1972C	p.S658P	CACTCCTCCTGCC	.	126.0	6.0	97.0	0.0	.	779	.	.	Atlas-SNP
ENOPH1	58478	hgsc.bcm.edu	hg19	4	83352029	83352029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENOPH1	NM_021204	exon1	c.A47G	p.D16G	TGTTAGATATCGA	.	85.0	4.0	73.0	0.0	.	26	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87556466	87556466	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPN13	NM_006264	exon2	c.A57G	p.E19E	GGAGGAAGAAATA	.	85.0	38.0	97.0	0.0	.	203	.	.	Atlas-SNP
SLC9B1	150159	hgsc.bcm.edu	hg19	4	103911043	103911043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001100874	exon3	c.A125G	p.D42G	TCTGTATCTGATA	.	92.0	4.0	91.0	0.0	.	.	.	.	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	hg19	4	111409837	111409837	+	Missense_Mutation	SNP	C	C	T	rs373049379		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ENPEP,NS,carcinoma,0,2	ENPEP	NM_001977	exon2	c.C785T	p.A262V	CAGTGGCGGTAAG	.	32.0	19.0	57.0	0.0	.	149	.	.	Atlas-SNP
CCNA2	890	hgsc.bcm.edu	hg19	4	122742218	122742218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CCNA2,colon,carcinoma,0,1	CCNA2	NM_001237	exon3	c.T486G	p.I162M	TAATATAATTGAC	.	120.0	0.0	157.0	0.0	.	30	.	.	Atlas-SNP
INTU	27152	hgsc.bcm.edu	hg19	4	128635178	128635178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTU	NM_015693	exon15	c.T2647C	p.F883L	GTGTTGTTTGAAT	.	65.0	4.0	82.0	0.0	.	92	.	.	Atlas-SNP
CLGN	1047	hgsc.bcm.edu	hg19	4	141320135	141320135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLGN	NM_001130675	exon9	c.A754G	p.S252G	GGAGGCTTCCTTT	.	80.0	4.0	143.0	0.0	.	76	.	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144109051	144109051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP38	NM_032557	exon2	c.T755C	p.L252P	CAGTTCTCATCAG	.	87.0	4.0	100.0	0.0	.	92	.	.	Atlas-SNP
GAB1	2549	hgsc.bcm.edu	hg19	4	144361320	144361320	+	Missense_Mutation	SNP	G	G	A	rs369383480		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GAB1	NM_207123	exon6	c.G1370A	p.R457Q	CACCACGACAACA	.	159.0	7.0	195.0	0.0	.	80	.	.	Atlas-SNP
PRMT10	90826	hgsc.bcm.edu	hg19	4	148559833	148559833	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRMT10	NM_138364	exon12	c.A2388G	p.E796E	AATCTCTTCATCA	.	86.0	4.0	115.0	0.0	.	68	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151773390	151773390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRBA	NM_006726	exon23	c.G3472A	p.E1158K	TTCCTTCTTGAAA	.	93.0	4.0	112.0	0.0	.	253	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158238831	158238831	+	Missense_Mutation	SNP	G	G	C	rs199950609	bycluster;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	GRIA2_ENST00000264426,NS,carcinoma,0,2	GRIA2	NM_000826	exon5	c.G688C	p.V230L	AAACATGTTAAAG	.	111.0	0.0	121.0	0.0	.	358	.	G|0.999;A|0.001	Atlas-SNP
NAF1	92345	hgsc.bcm.edu	hg19	4	164085383	164085383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAF1	NM_138386	exon2	c.G526C	p.E176Q	GTAATTCATCTTT	.	117.0	11.0	128.0	0.0	.	69	.	.	Atlas-SNP
NSUN2	54888	hgsc.bcm.edu	hg19	5	6607400	6607400	+	Missense_Mutation	SNP	G	G	T	rs374268482	alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	NSUN2,colon,carcinoma,0,1	NSUN2	NM_017755	exon13	c.C1421A	p.P474Q	AATGACGGACTTT	.	466.0	0.0	386.0	0.0	.	82	.	.	Atlas-SNP
CDH10	1008	hgsc.bcm.edu	hg19	5	24488013	24488013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH10	NM_006727	exon12	c.A2126G	p.D709G	CGGACGTCCGTGT	.	119.0	7.0	115.0	0.0	.	391	.	.	Atlas-SNP
NADKD1	133686	hgsc.bcm.edu	hg19	5	36226660	36226660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NADKD1	NM_001085411	exon3	c.A395G	p.E132G	ATTCCCTCATTCC	.	69.0	4.0	50.0	0.0	.	47	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	36975946	36975946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NIPBL	NM_015384	exon9	c.G937A	p.D313N	CCACCAGATATCT	.	93.0	4.0	82.0	0.0	.	513	.	.	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	hg19	5	39377005	39377005	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	DAB2,lower_third,carcinoma,0,1	DAB2	NM_001343	exon12	c.T1884C	p.P628P	CTTGGGAGGGCCA	.	143.0	6.0	98.0	0.0	.	124	.	.	Atlas-SNP
SLC38A9	153129	hgsc.bcm.edu	hg19	5	54952575	54952575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC38A9	NM_173514	exon9	c.A725G	p.D242G	ATAGTGTCTGTGT	.	88.0	4.0	87.0	0.0	.	50	.	.	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	hg19	5	57753128	57753128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLK2	NM_006622	exon7	c.G888A	p.R296R	TGTATACCTTGCT	.	56.0	4.0	32.0	0.0	.	71	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71494401	71494401	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP1B	NM_005909	exon5	c.A5219G	p.Q1740R	CTTCTCAGATCGC	.	126.0	6.0	75.0	0.0	.	243	.	.	Atlas-SNP
DMGDH	29958	hgsc.bcm.edu	hg19	5	78324266	78324266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	DMGDH,NS,carcinoma,0,1	DMGDH	NM_013391	exon12	c.A2022G	p.I674M	ATAAGATATCCTA	.	66.0	3.0	57.0	0.0	.	88	.	.	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80475996	80475996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RASGRF2	NM_006909	exon18	c.T2689C	p.F897L	TAAGGCTTTAACA	.	89.0	4.0	89.0	0.0	.	165	.	.	Atlas-SNP
ANKRD32	84250	hgsc.bcm.edu	hg19	5	94030556	94030556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD32	NM_032290	exon21	c.A2716G	p.R906G	CAACAGAGGAATG	.	97.0	5.0	114.0	0.0	.	117	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95226880	95226880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ELL2	NM_012081	exon10	c.A1688G	p.E563G	ACAGTCTCCATCC	.	149.0	7.0	143.0	0.0	.	63	.	.	Atlas-SNP
ERAP1	51752	hgsc.bcm.edu	hg19	5	96130756	96130756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERAP1	NM_001198541	exon5	c.T908C	p.L303P	TTGGGTAGGGGAT	.	116.0	5.0	77.0	0.0	.	59	.	.	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	hg19	5	115824677	115824677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA6A	NM_020796	exon8	c.A562G	p.T188A	AGTCAGTCACTGT	.	111.0	5.0	89.0	0.0	.	93	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118569090	118569090	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon38	c.A8331G	p.Q2777Q	TTCTCAACAAATA	.	122.0	6.0	115.0	0.0	.	268	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130769319	130769319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF6	NM_001164387	exon27	c.A3817G	p.N1273D	ACAAGTTGTCAGA	.	92.0	4.0	79.0	0.0	.	361	.	.	Atlas-SNP
SEPT8	23176	hgsc.bcm.edu	hg19	5	132096620	132096620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEPT8	NM_015146	exon9	c.A1160G	p.K387R	CGGCGCTTTTCCT	.	78.0	4.0	73.0	0.0	.	28	.	.	Atlas-SNP
SPINK6	404203	hgsc.bcm.edu	hg19	5	147593498	147593498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK6	NM_205841	exon3	c.C107A	p.P36H	AGGACCCCAAGGT	.	153.0	7.0	145.0	0.0	.	8	.	.	Atlas-SNP
SLC6A7	6534	hgsc.bcm.edu	hg19	5	149583547	149583547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC6A7	NM_014228	exon10	c.C1278A	p.F426L	GGTGTTCTCAGGG	.	236.0	73.0	205.0	0.0	.	52	.	.	Atlas-SNP
CD74	972	hgsc.bcm.edu	hg19	5	149792276	149792276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD74	NM_001025159	exon1	c.C37T	p.Q13X	GCTTCTGATCTTC	.	122.0	5.0	105.0	0.0	.	35	.	.	Atlas-SNP
HMMR	3161	hgsc.bcm.edu	hg19	5	162891750	162891750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMMR	NM_012485	exon3	c.T167C	p.V56A	TTAATGTTGACAA	.	73.0	4.0	65.0	0.0	.	64	.	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	hg19	5	172744893	172744893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STC2	NM_003714	exon4	c.A866G	p.E289G	TCCCACTCGCTGC	.	81.0	4.0	80.0	0.0	.	59	.	.	Atlas-SNP
PDLIM7	9260	hgsc.bcm.edu	hg19	5	176910650	176910650	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDLIM7	NM_005451	exon13	c.G1369C	p.V457L	CTCACACATGAGA	.	277.0	106.0	206.0	0.0	.	32	.	.	Atlas-SNP
GFPT2	9945	hgsc.bcm.edu	hg19	5	179762947	179762947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GFPT2	NM_005110	exon4	c.A221G	p.D74G	ATGCTGTCTTGTT	.	174.0	7.0	131.0	0.0	.	74	.	.	Atlas-SNP
EXOC2	55770	hgsc.bcm.edu	hg19	6	556010	556010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC2	NM_018303	exon19	c.T1936C	p.F646L	GTTGGAAGACCTG	.	115.0	5.0	94.0	0.0	.	81	.	.	Atlas-SNP
PHACTR1	221692	hgsc.bcm.edu	hg19	6	13206215	13206215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHACTR1	NM_030948	exon8	c.T833C	p.V278A	ACACTGTCCTGCC	.	126.0	6.0	99.0	0.0	.	94	.	.	Atlas-SNP
DDR1	780	hgsc.bcm.edu	hg19	6	30865154	30865154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDR1	NM_013994	exon14	c.A2014G	p.R672G	TTCTCCAGGAATG	.	79.0	4.0	57.0	0.0	.	213	.	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31929439	31929439	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SKIV2L	NM_006929	exon9	c.A905T	p.Q302L	TTCCCCAGCCAGC	.	117.0	36.0	58.0	0.0	.	97	.	.	Atlas-SNP
BTNL2	56244	hgsc.bcm.edu	hg19	6	32370747	32370747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BTNL2	NM_019602	exon3	c.T674C	p.L225P	TCAGTGAGGACGG	.	193.0	8.0	173.0	0.0	.	50	.	.	Atlas-SNP
RNF8	9025	hgsc.bcm.edu	hg19	6	37344709	37344709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF8	NM_003958	exon6	c.A1136G	p.K379R	AAGAGAAGGAGAA	.	90.0	5.0	63.0	0.0	.	78	.	.	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	hg19	6	37631783	37631783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MDGA1	NM_153487	exon2	c.T167C	p.L56P	AGCATGAGGGTGT	.	175.0	7.0	148.0	0.0	.	104	.	.	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	hg19	6	42232472	42232472	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRERF1	NM_033502	exon7	c.G1605A	p.G535G	CATTCCCCCGTGG	.	121.0	5.0	98.0	0.0	.	124	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43413441	43413441	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC10	NM_001198934	exon15	c.C3135A	p.I1045I	CAACATCCTCCTG	.	251.0	102.0	258.0	0.0	.	118	.	.	Atlas-SNP
TJAP1	93643	hgsc.bcm.edu	hg19	6	43473140	43473140	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TJAP1	NM_001146016	exon11	c.A1221G	p.E407E	CTCTGAAGAGGAC	.	79.0	4.0	55.0	0.0	.	35	.	.	Atlas-SNP
ANKRD66	100287718	hgsc.bcm.edu	hg19	6	46726514	46726514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001162435	exon5	c.T612C	p.P204P	GCTGCCTCTGGAT	.	101.0	6.0	41.0	0.0	.	.	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66204564	66204564	+	Missense_Mutation	SNP	G	G	A	rs367977860		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EYS	NM_001142801	exon4	c.C740T	p.P247L	GTAAATGGTGGGT	.	73.0	4.0	62.0	0.0	.	527	.	.	Atlas-SNP
DDX43	55510	hgsc.bcm.edu	hg19	6	74125911	74125911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX43	NM_018665	exon16	c.A1909G	p.M637V	AGAAAAATGGAAA	.	71.0	4.0	57.0	0.0	.	69	.	.	Atlas-SNP
TTK	7272	hgsc.bcm.edu	hg19	6	80721476	80721476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTK	NM_003318	exon7	c.A759G	p.I253M	AGAAATAGGTTAC	.	125.0	5.0	104.0	0.0	.	199	.	.	Atlas-SNP
NDUFAF4	29078	hgsc.bcm.edu	hg19	6	97338980	97338980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDUFAF4	NM_014165	exon3	c.A528G	p.X176W	TTTTCTTCATTTT	.	87.0	4.0	47.0	0.0	.	16	.	.	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	hg19	6	106536122	106536122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon2	c.C89T	p.A30V	GATTGGCAGAGGG	.	172.0	59.0	130.0	0.0	.	195	.	.	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	hg19	6	106553019	106553019	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRDM1	NM_001198	exon5	c.C984T	p.P328P	CTCCCCCATTCCA	.	44.0	18.0	26.0	0.0	.	195	.	.	Atlas-SNP
C6orf203	51250	hgsc.bcm.edu	hg19	6	107372314	107372314	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf203	NM_001142470	exon5	c.A612G	p.G204G	AGCAGGAACAGAG	.	93.0	4.0	64.0	0.0	.	26	.	.	Atlas-SNP
OSTM1	28962	hgsc.bcm.edu	hg19	6	108370618	108370618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSTM1	NM_014028	exon5	c.A788G	p.N263S	GTGATGTTCATCT	.	100.0	4.0	82.0	0.0	.	22	.	.	Atlas-SNP
MICAL1	64780	hgsc.bcm.edu	hg19	6	109773524	109773524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MICAL1	NM_001159291	exon6	c.A757G	p.T253A	CCTGTGTCTCCTC	.	128.0	6.0	80.0	0.0	.	79	.	.	Atlas-SNP
MED23	9439	hgsc.bcm.edu	hg19	6	131931307	131931307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MED23	NM_015979	exon12	c.A974G	p.E325G	AACTTCTCCTCGG	.	78.0	4.0	44.0	0.0	.	112	.	.	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135358603	135358603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HBS1L	NM_001145207	exon5	c.A992G	p.E331G	ATATTTTCCAACG	.	137.0	6.0	106.0	0.0	.	75	.	.	Atlas-SNP
MYB	4602	hgsc.bcm.edu	hg19	6	135507076	135507076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYB	NM_001161660	exon2	c.A59G	p.E20G	ACTTTGAGATGTG	.	90.0	4.0	80.0	0.0	.	137	.	.	Atlas-SNP
MAP3K5	4217	hgsc.bcm.edu	hg19	6	136935403	136935403	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP3K5	NM_005923	exon16	c.A2172G	p.E724E	TATTTCTTCATGC	.	76.0	4.0	57.0	0.0	.	136	.	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139197610	139197610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ECT2L	NM_001195037	exon13	c.A1580G	p.E527G	TTCAGGAAAGAAA	.	72.0	4.0	64.0	0.0	.	75	.	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	hg19	6	147049711	147049711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADGB	NM_024694	exon20	c.A2354G	p.E785G	CACAGGAGAGCTG	.	94.0	5.0	88.0	0.0	.	93	.	.	Atlas-SNP
STXBP5	134957	hgsc.bcm.edu	hg19	6	147631274	147631274	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STXBP5	NM_139244	exon10	c.A972G	p.R324R	AAGAAGACCTTGC	.	70.0	4.0	81.0	0.0	.	163	.	.	Atlas-SNP
LATS1	9113	hgsc.bcm.edu	hg19	6	149997708	149997708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LATS1	NM_004690	exon6	c.A2759G	p.E920G	AACACTTCAGGTG	.	81.0	4.0	63.0	0.0	.	241	.	.	Atlas-SNP
GPR31	2853	hgsc.bcm.edu	hg19	6	167571153	167571153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR31	NM_005299	exon1	c.T167C	p.L56P	AGGGCCAGGTTGA	.	151.0	7.0	196.0	0.0	.	44	.	.	Atlas-SNP
FOXK1	221937	hgsc.bcm.edu	hg19	7	4798978	4798978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXK1	NM_001037165	exon7	c.T1448C	p.V483A	TGGCCGTGCCTCC	.	30.0	4.0	68.0	0.0	.	64	.	.	Atlas-SNP
RBAK	57786	hgsc.bcm.edu	hg19	7	5104405	5104405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	RBAK_ENST00000396912,NS,malignant_melanoma,0,2	RBAK	NM_001204456	exon6	c.C1318T	p.R440W	TTTTCTCGGGTGT	.	72.0	3.0	61.0	0.0	.	82	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7555463	7555463	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL28A1	NM_001037763	exon8	c.T864C	p.P288P	GTACCCAGGAATT	.	94.0	4.0	84.0	0.0	.	113	.	.	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	hg19	7	24911688	24911688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL3	NM_145321	exon3	c.G97A	p.D33N	AGCTGTCCTGTTC	.	114.0	46.0	90.0	0.0	.	100	.	.	Atlas-SNP
SKAP2	8935	hgsc.bcm.edu	hg19	7	26765146	26765146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SKAP2	NM_003930	exon9	c.A697G	p.R233G	CTCCTCTCTCATC	.	91.0	4.0	68.0	0.0	.	40	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	hg19	7	36445866	36445866	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANLN	NM_018685	exon4	c.T564G	p.L188L	TCTGCTTTCAAAT	.	133.0	44.0	117.0	0.0	.	101	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42012094	42012094	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon13	c.C1945A	p.R649R	GCGGCCGAGGATG	.	190.0	79.0	129.0	0.0	.	312	.	.	Atlas-SNP
YKT6	10652	hgsc.bcm.edu	hg19	7	44247796	44247796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YKT6	NM_006555	exon5	c.T458C	p.L153P	TCATTCTGGTAAG	.	92.0	4.0	61.0	0.0	.	12	.	.	Atlas-SNP
SUMF2	25870	hgsc.bcm.edu	hg19	7	56136261	56136261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	SUMF2_ENST00000342190,NS,carcinoma,0,4	SUMF2	NM_015411	exon2	c.G211A	p.G71R	GGTGACGGGCCTG	.	128.0	0.0	96.0	0.0	.	56	.	.	Atlas-SNP
ZNF92	168374	hgsc.bcm.edu	hg19	7	64863524	64863524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF92	NM_152626	exon4	c.G497A	p.R166K	AGATAAGACATAC	.	91.0	4.0	37.0	0.0	.	68	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81662161	81662161	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA2D1	NM_000722	exon12	c.A1095G	p.G365G	CTCTTCTCCTCCA	.	91.0	5.0	37.0	0.0	.	191	.	.	Atlas-SNP
CROT	54677	hgsc.bcm.edu	hg19	7	86988625	86988625	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CROT	NM_001143935	exon5	c.A303G	p.R101R	TGAAAGAGCAAAA	.	141.0	6.0	68.0	0.0	.	81	.	.	Atlas-SNP
CASD1	64921	hgsc.bcm.edu	hg19	7	94166946	94166946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASD1	NM_022900	exon9	c.A1006G	p.N336D	CATCGTAATGCTC	.	228.0	47.0	104.0	0.0	.	70	.	.	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94293774	94293774	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PEG10	NM_001172438	exon2	c.T1134C	p.G378G	AGGAGGTCACTAC	.	180.0	9.0	96.0	0.0	.	36	.	.	Atlas-SNP
TMEM130	222865	hgsc.bcm.edu	hg19	7	98452869	98452869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM130	NM_152913	exon5	c.T797C	p.L266P	CTCCCCAGGAAGT	.	167.0	7.0	89.0	0.0	.	54	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98574152	98574152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRRAP	NM_001244580	exon54	c.A7985G	p.Q2662R	GTCACCAGGTGCA	.	84.0	4.0	19.0	0.0	.	863	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107866100	107866100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRCAM	NM_001037132	exon7	c.A767G	p.E256G	TAAAACTCAGTGT	.	84.0	4.0	60.0	0.0	.	267	.	.	Atlas-SNP
C7orf66	154907	hgsc.bcm.edu	hg19	7	108524086	108524086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C7orf66	NM_001024607	exon2	c.T326C	p.F109S	TTTGGAAAAGATT	.	89.0	4.0	88.0	0.0	.	29	.	.	Atlas-SNP
LRRN3	54674	hgsc.bcm.edu	hg19	7	110764583	110764583	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRN3	NM_018334	exon2	c.A1755G	p.P585P	GAATCCATCAACT	.	65.0	4.0	73.0	0.0	.	132	.	.	Atlas-SNP
ST7	7982	hgsc.bcm.edu	hg19	7	116771958	116771958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ST7	NM_018412	exon6	c.A585G	p.R195R	CTGGAGAGAGAGA	.	61.0	5.0	45.0	0.0	.	64	.	.	Atlas-SNP
ZNF800	168850	hgsc.bcm.edu	hg19	7	127026148	127026148	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF800	NM_176814	exon3	c.T123C	p.S41S	AATACCAGATTTG	.	91.0	4.0	83.0	0.0	.	78	.	.	Atlas-SNP
SVOPL	136306	hgsc.bcm.edu	hg19	7	138312173	138312173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SVOPL	NM_001139456	exon11	c.T1103C	p.L368P	CTTCCCAGGAAAT	.	90.0	4.0	59.0	0.0	.	111	.	.	Atlas-SNP
EPHA1	2041	hgsc.bcm.edu	hg19	7	143088824	143088824	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	EPHA1_ENST00000275815,NS,carcinoma,0,2	EPHA1	NM_005232	exon17	c.C2741G	p.P914R	CGATATGGGATCC	.	131.0	0.0	64.0	0.0	.	193	.	.	Atlas-SNP
C8orf42	157695	hgsc.bcm.edu	hg19	8	442414	442414	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	C8orf42,caecum,carcinoma,0,1	C8orf42	NM_175075	exon4	c.G543A	p.P181P	CTCCTCCGGGCTA	.	49.0	2.0	60.0	0.0	.	23	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2820095	2820095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CSMD1	NM_033225	exon61	c.A9521T	p.K3174M	TCGGACTTATAGG	.	71.0	42.0	91.0	0.0	.	1469	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3216715	3216715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CSMD1_ENST00000537824,right_lower_lobe,carcinoma,-1,1	CSMD1	NM_033225	exon21	c.G3263A	p.G1088E	CGGCCCCCACCCA	.	74.0	3.0	90.0	1.0	.	1469	.	.	Atlas-SNP
ANGPT2	285	hgsc.bcm.edu	hg19	8	6389963	6389963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANGPT2	NM_001118887	exon2	c.A334G	p.I112V	GCTGTATCTCTAC	.	121.0	5.0	203.0	0.0	.	126	.	.	Atlas-SNP
ERI1	90459	hgsc.bcm.edu	hg19	8	8875834	8875834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERI1	NM_153332	exon5	c.C610T	p.P204S	ACCTTCCCTCAGG	.	66.0	4.0	114.0	0.0	.	20	.	.	Atlas-SNP
MTMR7	9108	hgsc.bcm.edu	hg19	8	17159699	17159699	+	Silent	SNP	A	A	G	rs373353287		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTMR7	NM_004686	exon13	c.T1584C	p.T528T	CTGCTGAGTTTCT	.	86.0	4.0	130.0	0.0	.	75	.	.	Atlas-SNP
INTS10	55174	hgsc.bcm.edu	hg19	8	19694579	19694579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTS10	NM_018142	exon13	c.T1547C	p.V516A	AAAAAGTCCTTGA	.	96.0	4.0	153.0	0.0	.	46	.	.	Atlas-SNP
SLC39A14	23516	hgsc.bcm.edu	hg19	8	22273673	22273673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC39A14	NM_001135153	exon7	c.A1027G	p.S343G	ACTCTGAGCGACG	.	143.0	6.0	174.0	0.0	.	59	.	.	Atlas-SNP
ESCO2	157570	hgsc.bcm.edu	hg19	8	27634369	27634369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESCO2	NM_001017420	exon3	c.T544C	p.C182R	AATAATTGTCATT	.	54.0	4.0	50.0	0.0	.	50	.	.	Atlas-SNP
PROSC	11212	hgsc.bcm.edu	hg19	8	37633463	37633463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PROSC	NM_007198	exon7	c.T625C	p.C209R	GAGCTGTGTAAAA	.	84.0	4.0	51.0	0.0	.	20	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38205330	38205330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WHSC1L1	NM_017778	exon2	c.A360G	p.R120R	ATGTGGTCTTGTG	.	75.0	4.0	76.0	0.0	.	137	.	.	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	hg19	8	42176819	42176819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IKBKB	NM_001556	exon14	c.T1396C	p.S466P	TGCCTCTCCAAAA	.	87.0	4.0	72.0	0.0	.	88	.	.	Atlas-SNP
NSMAF	8439	hgsc.bcm.edu	hg19	8	59522272	59522272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NSMAF	NM_001144772	exon10	c.A671G	p.K224R	TGCAGCTTTTCAG	.	85.0	4.0	62.0	0.0	.	156	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73480531	73480531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNB2	NM_004770	exon2	c.T562C	p.S188P	CCTAACTCATCAG	.	74.0	5.0	48.0	0.0	.	228	.	.	Atlas-SNP
CRISPLD1	83690	hgsc.bcm.edu	hg19	8	75932282	75932282	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRISPLD1	NM_031461	exon12	c.T1212C	p.C404C	GCTCTGTCCATTT	.	248.0	11.0	157.0	0.0	.	94	.	.	Atlas-SNP
RALYL	138046	hgsc.bcm.edu	hg19	8	85097244	85097244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RALYL	NM_001100391	exon1	c.G11C	p.R4P	GTAAACGACGCAG	.	174.0	7.0	160.0	0.0	.	123	.	.	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	hg19	8	87410810	87410810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WWP1	NM_007013	exon7	c.A482G	p.Q161R	AAATACAGGAAAA	.	146.0	6.0	132.0	0.0	.	97	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	hg19	8	99608284	99608284	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STK3	NM_001256312	exon9	c.A882G	p.R294R	AGTAGCTCTCTGC	.	247.0	10.0	182.0	0.0	.	47	.	.	Atlas-SNP
STK3	6788	hgsc.bcm.edu	hg19	8	99718796	99718796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	STK3,NS,carcinoma,0,2	STK3	NM_001256312	exon8	c.G667A	p.E223K	CTATTTCTTGAAT	.	110.0	5.0	80.0	0.0	.	47	.	.	Atlas-SNP
TNFRSF11B	4982	hgsc.bcm.edu	hg19	8	119945174	119945174	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNFRSF11B	NM_002546	exon2	c.A396G	p.Q132Q	ACCAGCTTGCACC	.	90.0	4.0	78.0	0.0	.	87	.	.	Atlas-SNP
MTSS1	9788	hgsc.bcm.edu	hg19	8	125569986	125569986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTSS1	NM_014751	exon11	c.A1166G	p.D389G	GCGTAGTCTGGAA	.	142.0	7.0	120.0	0.0	.	79	.	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126052109	126052109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA0196	NM_014846	exon24	c.T2882C	p.I961T	TTGGCAATCTGTT	.	81.0	4.0	63.0	0.0	.	90	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141675017	141675017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTK2	NM_005607	exon31	c.A3011G	p.E1004G	CCTACCTCTCGGT	.	123.0	6.0	89.0	0.0	.	311	.	.	Atlas-SNP
MROH6	642475	hgsc.bcm.edu	hg19	8	144654667	144654667	+	Missense_Mutation	SNP	G	G	A	rs368816807		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001100878	exon1	c.C218T	p.A73V	ACGGTGGCCCCAC	.	93.0	16.0	62.0	0.0	.	.	.	.	Atlas-SNP
ERMP1	79956	hgsc.bcm.edu	hg19	9	5805053	5805053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERMP1	NM_024896	exon10	c.T1888C	p.C630R	TTGTACAGCCAGC	.	77.0	4.0	105.0	0.0	.	63	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13168371	13168371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MPDZ	NM_003829	exon22	c.A3248G	p.D1083G	TTTATGTCAGGGC	.	84.0	5.0	95.0	0.0	.	324	.	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	hg19	9	14737508	14737508	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FREM1	NM_144966	exon38	c.T6426C	p.S2142S	GCGTTGAGAGGGC	.	93.0	4.0	133.0	0.0	.	261	.	.	Atlas-SNP
PLIN2	123	hgsc.bcm.edu	hg19	9	19123604	19123604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLIN2	NM_001122	exon4	c.A268G	p.I90V	CCTCAATCCTGTC	.	96.0	4.0	130.0	0.0	.	41	.	.	Atlas-SNP
IFNA2	3440	hgsc.bcm.edu	hg19	9	21385289	21385289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFNA2	NM_000605	exon1	c.C40T	p.L14F	AGCTGAGCACCAG	.	118.0	67.0	133.0	0.0	.	32	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27169566	27169566	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEK	NM_000459	exon4	c.C567T	p.Y189Y	AGTGTACTCGGCC	.	77.0	4.0	94.0	0.0	.	250	.	.	Atlas-SNP
DNAJA1	3301	hgsc.bcm.edu	hg19	9	33037024	33037024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJA1	NM_001539	exon8	c.A886G	p.K296E	ATTGTCAAGCATG	.	82.0	4.0	51.0	0.0	.	26	.	.	Atlas-SNP
OMD	4958	hgsc.bcm.edu	hg19	9	95179318	95179318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OMD	NM_005014	exon2	c.T523C	p.S175P	GTTTGGAGATTTC	.	142.0	6.0	109.0	0.0	.	42	.	.	Atlas-SNP
NCBP1	4686	hgsc.bcm.edu	hg19	9	100429054	100429054	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NCBP1	NM_002486	exon20	c.T1911C	p.V637V	GTTTGTTTGGGAA	.	83.0	4.0	70.0	0.0	.	64	.	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101829178	101829178	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL15A1	NM_001855	exon40	c.T3666C	p.A1222A	GGCTGCTCTGAAC	.	102.0	5.0	80.0	0.0	.	211	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107581925	107581925	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCA1	NM_005502	exon22	c.T3183C	p.A1061A	CACACCAGCTGTG	.	132.0	6.0	147.0	0.0	.	244	.	.	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	hg19	9	116359110	116359110	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS3	NM_144488	exon26	c.C3474T	p.G1158G	GCGGGGCTGCTTC	.	144.0	6.0	111.0	0.0	.	251	.	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	117052561	117052561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL27A1	NM_032888	exon47	c.A4318T	p.I1440F	GAGGGCATCGCTG	.	211.0	27.0	186.0	0.0	.	200	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123857214	123857214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTRL	NM_007018	exon3	c.A397G	p.S133G	AATCTCAGCTATA	.	86.0	4.0	80.0	0.0	.	161	.	.	Atlas-SNP
LHX2	9355	hgsc.bcm.edu	hg19	9	126774713	126774713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LHX2	NM_004789	exon1	c.T86C	p.I29T	CCGCCATCAGCTC	.	45.0	4.0	41.0	0.0	.	30	.	.	Atlas-SNP
GARNL3	84253	hgsc.bcm.edu	hg19	9	130087373	130087373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GARNL3	NM_032293	exon7	c.A593G	p.E198G	AACAAGAGGTGAG	.	96.0	4.0	74.0	0.0	.	83	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131374459	131374459	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPTAN1	NM_001130438	exon39	c.G4977C	p.L1659L	GAAACTGAAAGAA	.	196.0	85.0	123.0	0.0	.	266	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134073130	134073130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP214	NM_005085	exon29	c.A4249G	p.T1417A	CCAGTCACCAGTG	.	89.0	4.0	87.0	0.0	.	166	.	.	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134514137	134514137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF1	NM_198679	exon5	c.T539C	p.L180P	TTGGCGAGGCTTT	.	199.0	8.0	142.0	0.0	.	126	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137726974	137726974	+	Missense_Mutation	SNP	G	G	A	rs150608071		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL5A1	NM_000093	exon65	c.G5294A	p.R1765H	CCCTCCGCTTCCT	.	129.0	53.0	122.0	0.0	.	323	.	G|1.000;A|0.000	Atlas-SNP
SOHLH1	402381	hgsc.bcm.edu	hg19	9	138586277	138586277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SOHLH1	NM_001012415	exon7	c.A902G	p.D301G	GTCCCATCGTCCA	.	68.0	4.0	40.0	0.0	.	70	.	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	hg19	10	7751097	7751097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITIH2	NM_002216	exon4	c.A305G	p.Q102R	AGCCTCAGAATGT	.	153.0	7.0	117.0	0.0	.	144	.	.	Atlas-SNP
USP6NL	9712	hgsc.bcm.edu	hg19	10	11505825	11505825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP6NL	NM_001080491	exon14	c.A1153G	p.K385E	AGGGCTTCTTTGG	.	82.0	4.0	64.0	0.0	.	57	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17113457	17113457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CUBN	NM_001081	exon19	c.A2593G	p.S865G	CAGAACTTCCAAT	.	122.0	5.0	77.0	0.0	.	515	.	.	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	hg19	10	21134239	21134239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEBL	NM_006393	exon12	c.A1175G	p.D392G	GTCTTGTCTAAAT	.	80.0	5.0	47.0	0.0	.	199	.	.	Atlas-SNP
COMMD3-BMI1	0	hgsc.bcm.edu	hg19	10	22618212	22618212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001204062	exon14	c.A1151G	p.D384G	AGAGAGATGGACT	.	66.0	4.0	61.0	0.0	.	.	.	.	Atlas-SNP
YME1L1	10730	hgsc.bcm.edu	hg19	10	27408356	27408356	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YME1L1	NM_139312	exon15	c.T1605C	p.A535A	ACCTCGAGCTATA	.	65.0	4.0	43.0	0.0	.	71	.	.	Atlas-SNP
TSPAN15	23555	hgsc.bcm.edu	hg19	10	71211441	71211441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSPAN15	NM_012339	exon1	c.T91C	p.F31L	ACCGTGTTCTGGG	.	90.0	4.0	64.0	0.0	.	22	.	.	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89717725	89717725	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PTEN,NS,carcinoma,0,5	PTEN	NM_000314	exon7	c.T750A	p.C250X	TGTGTGTGGTGAT	.	74.0	50.0	124.0	0.0	.	3652	.	.	Atlas-SNP
CPEB3	22849	hgsc.bcm.edu	hg19	10	93904731	93904731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPEB3	NM_014912	exon5	c.T1334C	p.V445A	CCTCCAACAAACA	.	72.0	4.0	70.0	0.0	.	43	.	.	Atlas-SNP
EXOC6	54536	hgsc.bcm.edu	hg19	10	94688164	94688164	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC6	NM_019053	exon9	c.A957G	p.Q319Q	ATTGCAACCCCAG	.	60.0	4.0	81.0	0.0	.	147	.	.	Atlas-SNP
TLL2	7093	hgsc.bcm.edu	hg19	10	98170214	98170214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TLL2	NM_012465	exon9	c.C1066A	p.Q356K	TGTCCTGCAGGGT	.	59.0	40.0	102.0	0.0	.	122	.	.	Atlas-SNP
MORN4	118812	hgsc.bcm.edu	hg19	10	99376156	99376156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MORN4	NM_001098831	exon5	c.T305C	p.F102S	TCAGGGAAAGTCA	.	53.0	4.0	79.0	0.0	.	24	.	.	Atlas-SNP
GOLGA7B	401647	hgsc.bcm.edu	hg19	10	99619216	99619216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GOLGA7B	NM_001010917	exon2	c.T14C	p.V5A	CTCAGGTCCACAA	.	69.0	4.0	77.0	0.0	.	11	.	.	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	hg19	10	104128552	104128552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GBF1	NM_001199378	exon23	c.T2936C	p.I979T	ATCTCATCATCTC	.	80.0	4.0	153.0	0.0	.	142	.	.	Atlas-SNP
NT5C2	22978	hgsc.bcm.edu	hg19	10	104849568	104849568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NT5C2	NM_012229	exon19	c.A1547G	p.D516G	TCAGTGTCTTTGA	.	134.0	6.0	185.0	0.0	.	41	.	.	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105921776	105921776	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR96	NM_025145	exon26	c.T3357C	p.A1119A	CATCAGAGCTCGG	.	95.0	4.0	114.0	0.0	.	183	.	.	Atlas-SNP
ADD3	120	hgsc.bcm.edu	hg19	10	111883900	111883900	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADD3	NM_001121	exon10	c.T1269C	p.S423S	ACTCTCTCCTCTC	.	100.0	4.0	125.0	0.0	.	89	.	.	Atlas-SNP
SHOC2	8036	hgsc.bcm.edu	hg19	10	112769581	112769581	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHOC2	NM_007373	exon8	c.A1533G	p.E511E	TCCTGAAGAAATT	.	96.0	4.0	127.0	0.0	.	49	.	.	Atlas-SNP
PNLIPRP3	119548	hgsc.bcm.edu	hg19	10	118196248	118196248	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNLIPRP3	NM_001011709	exon2	c.A75G	p.L25L	AAGGTTAGGGTGT	.	94.0	4.0	88.0	0.0	.	101	.	.	Atlas-SNP
SLC18A2	6571	hgsc.bcm.edu	hg19	10	119026263	119026263	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC18A2	NM_003054	exon11	c.T1011C	p.A337A	GCCAGCTAGTATC	.	85.0	4.0	139.0	0.0	.	58	.	.	Atlas-SNP
EIF3A	8661	hgsc.bcm.edu	hg19	10	120828985	120828985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF3A	NM_003750	exon6	c.A923G	p.K308R	AGATTCTTTCTCA	.	68.0	4.0	93.0	0.0	.	142	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	134980888	134980888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KNDC1	NM_152643	exon2	c.A106G	p.N36D	CAGGAGAACGTGT	.	125.0	5.0	103.0	0.0	.	155	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	134999520	134999520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KNDC1	NM_152643	exon6	c.A668G	p.N223S	CAGGAAACGCTGG	.	92.0	5.0	117.0	0.0	.	155	.	.	Atlas-SNP
B4GALNT4	338707	hgsc.bcm.edu	hg19	11	376081	376081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	B4GALNT4	NM_178537	exon12	c.T1103C	p.L368P	TGTACCTGTCCTT	.	62.0	4.0	55.0	0.0	.	83	.	.	Atlas-SNP
ZNF195	7748	hgsc.bcm.edu	hg19	11	3380971	3380971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF195	NM_001130520	exon6	c.T1267C	p.S423P	GGTCTGAGAACCA	.	68.0	4.0	59.0	0.0	.	77	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4127278	4127278	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RRM1	NM_001033	exon3	c.T111C	p.A37A	GTAGGCTCAGATC	.	82.0	5.0	68.0	0.0	.	31	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	rs78250081	bycluster	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMPD1	NM_000543	exon1	c.C113T	p.A38V	TGCTGGCGCTGGC	.	20.0	5.0	13.0	0.0	.	108	.	.	Atlas-SNP
OR6A2	8590	hgsc.bcm.edu	hg19	11	6816516	6816516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6A2	NM_003696	exon1	c.A424G	p.S142G	GGCCACTGACAAT	.	78.0	4.0	66.0	0.0	.	68	.	.	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7092523	7092523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP14	NM_176822	exon12	c.G3266T	p.W1089L	TGTCTTGGTGGTG	.	74.0	22.0	52.0	0.0	.	187	.	.	Atlas-SNP
ZBED5	58486	hgsc.bcm.edu	hg19	11	10875063	10875063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZBED5	NM_021211	exon3	c.T1430C	p.L477P	TCTGCAAGATATG	.	94.0	4.0	95.0	0.0	.	50	.	.	Atlas-SNP
CCDC73	493860	hgsc.bcm.edu	hg19	11	32722338	32722338	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC73	NM_001008391	exon5	c.G314G	p.C105C	AATACCTTTTCTT	.	82.0	4.0	62.0	0.0	.	136	.	.	Atlas-SNP
NAT10	55226	hgsc.bcm.edu	hg19	11	34158558	34158558	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAT10	NM_024662	exon21	c.T2196C	p.Y732Y	TGTTTATCTGAGA	.	122.0	6.0	95.0	0.0	.	78	.	.	Atlas-SNP
PDHX	8050	hgsc.bcm.edu	hg19	11	35016619	35016619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDHX	NM_003477	exon11	c.T1406C	p.V469A	TAACAGTCACAAT	.	98.0	4.0	84.0	0.0	.	40	.	.	Atlas-SNP
C11orf84	144097	hgsc.bcm.edu	hg19	11	63586119	63586119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C11orf84	NM_138471	exon4	c.A728G	p.D243G	ACCCTGACCCAGG	.	73.0	5.0	34.0	0.0	.	33	.	.	Atlas-SNP
RCOR2	283248	hgsc.bcm.edu	hg19	11	63681765	63681765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	RCOR2,colon,carcinoma,0,1	RCOR2	NM_173587	exon7	c.G643A	p.G215R	GCTCTCCCTCACT	.	221.0	64.0	121.0	0.0	.	43	.	.	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64598997	64598997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC42BPG	NM_017525	exon28	c.C3284T	p.T1095M	CAGAGCGTGTGAG	.	240.0	30.0	180.0	0.0	.	101	.	.	Atlas-SNP
CST6	1474	hgsc.bcm.edu	hg19	11	65779730	65779730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CST6	NM_001323	exon1	c.C215T	p.T72M	GAGACACGCACAT	.	94.0	4.0	60.0	0.0	.	14	.	.	Atlas-SNP
RIN1	9610	hgsc.bcm.edu	hg19	11	66101126	66101126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIN1	NM_004292	exon8	c.A1595G	p.E532G	GCGCCCTCCCCTG	.	221.0	9.0	172.0	0.0	.	64	.	.	Atlas-SNP
PELI3	246330	hgsc.bcm.edu	hg19	11	66243164	66243164	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PELI3	NM_145065	exon8	c.T936C	p.A312A	GCGGGCTCCCACA	.	216.0	10.0	127.0	0.0	.	36	.	.	Atlas-SNP
RPS6KB2	6199	hgsc.bcm.edu	hg19	11	67200629	67200629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPS6KB2	NM_003952	exon9	c.A740G	p.N247S	GCCACAACCGGGC	.	87.0	24.0	60.0	0.0	.	92	.	.	Atlas-SNP
PITPNM1	9600	hgsc.bcm.edu	hg19	11	67261213	67261213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PITPNM1	NM_004910	exon21	c.T3104C	p.V1035A	ATGGAGACGCTGG	.	193.0	10.0	114.0	0.0	.	84	.	.	Atlas-SNP
ALG8	79053	hgsc.bcm.edu	hg19	11	77812229	77812229	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALG8	NM_024079	exon13	c.T1362C	p.P454P	AAAAAGAGGTTTT	.	94.0	5.0	58.0	0.0	.	54	.	.	Atlas-SNP
USP35	57558	hgsc.bcm.edu	hg19	11	77920940	77920940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP35	NM_020798	exon10	c.A2039G	p.E680G	AGAGGGAGGAAGA	.	188.0	9.0	109.0	0.0	.	179	.	.	Atlas-SNP
TMEM135	65084	hgsc.bcm.edu	hg19	11	87020678	87020678	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM135	NM_022918	exon10	c.T900C	p.L300L	CCAGCTTGGAGCT	.	105.0	5.0	55.0	0.0	.	40	.	.	Atlas-SNP
TYR	7299	hgsc.bcm.edu	hg19	11	89028385	89028385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TYR	NM_000372	exon5	c.G1441C	p.A481P	CTTGGGGCGGCGA	.	384.0	25.0	238.0	0.0	.	130	.	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	99715962	99715962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CNTN5	NM_001243270	exon5	c.T545C	p.I182T	GGAGTATTCTTAG	.	86.0	4.0	51.0	0.0	.	324	.	.	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	hg19	11	101454149	101454149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRPC6	NM_004621	exon1	c.A86G	p.Q29R	TAGTCCTGGCTCT	.	67.0	4.0	42.0	0.0	.	132	.	.	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119028987	119028987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCG4	NM_022169	exon10	c.T1112C	p.L371P	GCACCCTCACACA	.	174.0	7.0	117.0	0.0	.	77	.	.	Atlas-SNP
EI24	9538	hgsc.bcm.edu	hg19	11	125452299	125452299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	EI24_ENST00000278903,caecum,carcinoma,0,2	EI24	NM_001007277	exon9	c.G731A	p.R244K	AGCAAAGACCCTG	.	35.0	4.0	36.0	1.0	.	33	.	.	Atlas-SNP
WNT5B	81029	hgsc.bcm.edu	hg19	12	1741875	1741875	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WNT5B	NM_032642	exon3	c.C132G	p.A44A	CGGTGCCCAGCCC	.	147.0	61.0	129.0	0.0	.	27	.	.	Atlas-SNP
DYRK4	8798	hgsc.bcm.edu	hg19	12	4700393	4700393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYRK4	NM_003845	exon3	c.G47C	p.S16T	ACCCTAGCATTAA	.	197.0	66.0	170.0	0.0	.	75	.	.	Atlas-SNP
NOP2	4839	hgsc.bcm.edu	hg19	12	6672806	6672806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOP2	NM_001258309	exon8	c.T761C	p.L254P	GGGGGCAGCACAA	.	95.0	4.0	96.0	0.0	.	44	.	.	Atlas-SNP
LPAR5	57121	hgsc.bcm.edu	hg19	12	6729711	6729711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPAR5	NM_001142961	exon2	c.T704C	p.L235P	AGCAGGAGGCGCA	.	30.0	4.0	42.0	0.0	.	30	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7050600	7050600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATN1	NM_001007026	exon9	c.A3422G	p.Q1141R	AGCTGCAGGCCAT	.	81.0	4.0	78.0	0.0	.	95	.	.	Atlas-SNP
CLSTN3	9746	hgsc.bcm.edu	hg19	12	7295529	7295529	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLSTN3	NM_014718	exon11	c.T1605C	p.G535G	CTCAGGTCGCCTG	.	233.0	11.0	183.0	0.0	.	84	.	.	Atlas-SNP
LRP6	4040	hgsc.bcm.edu	hg19	12	12300340	12300340	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP6	NM_002336	exon15	c.T3357C	p.A1119A	TGAATCAGCCCAA	.	117.0	5.0	92.0	0.0	.	170	.	.	Atlas-SNP
CDKN1B	1027	hgsc.bcm.edu	hg19	12	12871837	12871837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKN1B	NM_004064	exon2	c.A554G	p.E185G	CTGTGGAGCAGAC	.	71.0	4.0	62.0	0.0	.	48	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19475253	19475253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLEKHA5	NM_001256470	exon19	c.A2227G	p.S743G	AAGTTAAGCCGAT	.	53.0	4.0	18.0	0.0	.	198	.	.	Atlas-SNP
GYS2	2998	hgsc.bcm.edu	hg19	12	21692268	21692268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GYS2	NM_021957	exon15	c.A1814G	p.Y605C	TGCTGGTAATACT	.	89.0	4.0	101.0	0.0	.	110	.	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	hg19	12	21960279	21960279	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC9	NM_020297	exon37	c.4449+1G>A	.	CACTCACTGTGGC	.	97.0	5.0	96.0	0.0	.	411	.	.	Atlas-SNP
OVCH1	341350	hgsc.bcm.edu	hg19	12	29630051	29630051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OVCH1	NM_183378	exon12	c.A1361G	p.E454G	TGCTTCTCTGGAG	.	89.0	4.0	86.0	0.0	.	195	.	.	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	hg19	12	29904627	29904627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMTC1	NM_001193451	exon5	c.T910C	p.S304P	GTGGGGACACTGG	.	103.0	5.0	91.0	0.0	.	147	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31632582	31632582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DENND5B	NM_144973	exon3	c.A845G	p.N282S	ACCAGGTTCTCTA	.	95.0	4.0	76.0	0.0	.	114	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43822261	43822261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS20	NM_025003	exon26	c.A3728G	p.E1243G	TAATTCTCATCAA	.	162.0	7.0	153.0	0.0	.	635	.	.	Atlas-SNP
ANO6	196527	hgsc.bcm.edu	hg19	12	45771870	45771870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANO6	NM_001204803	exon11	c.T1202C	p.V401A	CCCTGGTCTTTGC	.	94.0	5.0	80.0	0.0	.	163	.	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	hg19	12	48134787	48134787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF3	NM_001098531	exon20	c.T1960C	p.S654P	CAGCAGAGCCCAC	.	198.0	9.0	192.0	0.0	.	98	.	.	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	hg19	12	51077012	51077012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIP2B	NM_173602	exon10	c.A1298G	p.E433G	CTATAGAGGTACC	.	82.0	4.0	53.0	0.0	.	167	.	.	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51510142	51510142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TFCP2	NM_001173452	exon4	c.A413G	p.E138G	CAGCCCTCTAGCT	.	200.0	10.0	166.0	0.0	.	49	.	.	Atlas-SNP
ACVR1B	91	hgsc.bcm.edu	hg19	12	52385707	52385707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACVR1B	NM_020328	exon9	c.A1445G	p.E482G	CCATTGAGGAAAT	.	150.0	6.0	140.0	0.0	.	167	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53069297	53069297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	KRT1,NS,carcinoma,0,1	KRT1	NM_006121	exon9	c.T1615C	p.Y539H	AACCATAGCTACC	.	56.0	3.0	43.0	0.0	.	110	.	.	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54797420	54797420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGA5	NM_002205	exon17	c.A1765G	p.I589V	GGTAGATCTTCAT	.	111.0	5.0	71.0	0.0	.	99	.	.	Atlas-SNP
PDE1B	5153	hgsc.bcm.edu	hg19	12	54968906	54968906	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDE1B	NM_000924	exon11	c.T1089C	p.S363S	CCTGTCTCTACTG	.	95.0	4.0	89.0	0.0	.	76	.	.	Atlas-SNP
OR6C70	390327	hgsc.bcm.edu	hg19	12	55863303	55863303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR6C70	NM_001005499	exon1	c.T620C	p.V207A	AATGTGACAATAA	.	100.0	6.0	66.0	0.0	.	35	.	.	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	hg19	12	57857530	57857530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI1	NM_005269	exon2	c.T56C	p.L19P	GCTGTCTCCGGCC	.	53.0	4.0	48.0	0.0	.	141	.	.	Atlas-SNP
SLC16A7	9194	hgsc.bcm.edu	hg19	12	60098572	60098572	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC16A7	.	.	.	.	CCACTAGAGGAGC	.	92.0	38.0	100.0	0.0	.	82	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88454605	88454605	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP290	NM_025114	exon48	c.6522+2T>A	.	AAAATTACCTTCA	.	80.0	7.0	84.0	0.0	.	195	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88454606	88454606	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP290	NM_025114	exon48	c.6522+1G>T	.	AAATTACCTTCAA	.	82.0	5.0	86.0	0.0	.	195	.	.	Atlas-SNP
CCDC41	51134	hgsc.bcm.edu	hg19	12	94769731	94769731	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC41	NM_016122	exon8	c.T864C	p.S288S	TTGTTCACTGCTT	.	69.0	4.0	71.0	0.0	.	59	.	.	Atlas-SNP
NEDD1	121441	hgsc.bcm.edu	hg19	12	97328852	97328852	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEDD1	NM_001135175	exon6	c.T609C	p.S203S	TCAGAGTCCATAC	.	203.0	9.0	192.0	0.0	.	47	.	.	Atlas-SNP
APAF1	317	hgsc.bcm.edu	hg19	12	99060128	99060128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APAF1	NM_181868	exon9	c.A1355G	p.Q452R	GCAGCCAGCTTCA	.	99.0	4.0	75.0	0.0	.	111	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99129364	99129364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKS1B	NM_152788	exon26	c.A3721G	p.T1241A	CCTCAGTGTGTCT	.	67.0	4.0	64.0	0.0	.	180	.	.	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	100173672	100173672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKS1B	NM_152788	exon6	c.T824C	p.L275P	ATCTGGAGAGATT	.	167.0	7.0	133.0	0.0	.	180	.	.	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	hg19	12	102155033	102155033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GNPTAB	NM_024312	exon15	c.A3007G	p.S1003G	CTGCACTCATGAG	.	94.0	4.0	67.0	0.0	.	120	.	.	Atlas-SNP
NAA25	80018	hgsc.bcm.edu	hg19	12	112479858	112479858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAA25	NM_024953	exon20	c.C2425G	p.L809V	GGTCTAGTAAAGA	.	25.0	6.0	17.0	0.0	.	105	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112703054	112703054	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001109662	exon16	c.A2112G	p.R704R	GGATTCTCGTACA	.	92.0	4.0	74.0	0.0	.	.	.	.	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	hg19	12	115112498	115112498	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBX3	NM_016569	exon7	c.T1242C	p.A414A	AAGGTGAGCCTTG	.	67.0	4.0	89.0	0.0	.	106	.	.	Atlas-SNP
ORAI1	84876	hgsc.bcm.edu	hg19	12	122064777	122064777	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ORAI1	NM_032790	exon1	c.C130G	p.P44A	GCCCCGCCACCGC	.	13.0	5.0	6.0	0.0	.	66	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124323027	124323027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon28	c.C4573A	p.P1525T	AAAGACCCCGTGA	.	50.0	19.0	72.0	0.0	.	888	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124354958	124354958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH10	NM_207437	exon43	c.A7211G	p.N2404S	AACGGAATCAATG	.	65.0	4.0	78.0	0.0	.	888	.	.	Atlas-SNP
FBRSL1	57666	hgsc.bcm.edu	hg19	12	133102379	133102379	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBRSL1	NM_001142641	exon3	c.A549G	p.E183E	CCTCGAAGCCACC	.	74.0	4.0	101.0	0.0	.	47	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23907453	23907453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SACS	NM_014363	exon10	c.T10562C	p.L3521P	CTTTCCAGTTTTT	.	87.0	4.0	125.0	0.0	.	871	.	.	Atlas-SNP
USP12	219333	hgsc.bcm.edu	hg19	13	27664255	27664255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP12	NM_182488	exon5	c.A614G	p.D205G	TCCACGTCAACAG	.	118.0	5.0	130.0	0.0	.	35	.	.	Atlas-SNP
USP12	219333	hgsc.bcm.edu	hg19	13	27679961	27679961	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP12	NM_182488	exon3	c.T250C	p.L84L	CTGCTAAGCATGT	.	54.0	4.0	60.0	0.0	.	35	.	.	Atlas-SNP
PAN3	255967	hgsc.bcm.edu	hg19	13	28854573	28854573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAN3	NM_175854	exon16	c.G2214C	p.R738S	AAACAGGATGCGA	.	73.0	48.0	75.0	0.0	.	123	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38211176	38211176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRPC4	NM_003306	exon11	c.A2813G	p.E938G	ACCTTCTCTGACT	.	125.0	5.0	183.0	0.0	.	389	.	.	Atlas-SNP
ALG11	440138	hgsc.bcm.edu	hg19	13	52602568	52602568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALG11	NM_001004127	exon4	c.A1321G	p.S441G	GCTGAGAGTGAAG	.	99.0	4.0	115.0	0.0	.	39	.	.	Atlas-SNP
NEK3	4752	hgsc.bcm.edu	hg19	13	52707932	52707932	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK3	NM_002498	exon15	c.A1329G	p.K443K	GGGGCCTTTCAAG	.	60.0	4.0	84.0	0.0	.	41	.	.	Atlas-SNP
PCDH8	5100	hgsc.bcm.edu	hg19	13	53418699	53418699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDH8	NM_002590	exon3	c.T3209C	p.V1070A	GATTACACATTTT	.	95.0	4.0	123.0	0.0	.	95	.	.	Atlas-SNP
DIS3	22894	hgsc.bcm.edu	hg19	13	73342977	73342977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DIS3	NM_014953	exon14	c.T1829C	p.L610P	CCACGGAGACTAG	.	170.0	7.0	214.0	0.0	.	103	.	.	Atlas-SNP
GPC5	2262	hgsc.bcm.edu	hg19	13	92345688	92345688	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC5	NM_004466	exon3	c.A573G	p.S191S	ATACTCAGAATGC	.	74.0	5.0	85.0	0.0	.	140	.	.	Atlas-SNP
TPP2	7174	hgsc.bcm.edu	hg19	13	103268804	103268804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPP2	NM_003291	exon4	c.G449T	p.C150F	AAGCCTGTAGAAA	.	73.0	38.0	58.0	0.0	.	124	.	.	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111919988	111919988	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF7	NM_001113511	exon10	c.T1107C	p.P369P	TCACCCTTCTGCA	.	96.0	4.0	90.0	0.0	.	157	.	.	Atlas-SNP
TUBGCP3	10426	hgsc.bcm.edu	hg19	13	113170854	113170854	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUBGCP3	NM_006322	exon17	c.A1986G	p.R662R	AAATACTCTTAGG	.	95.0	4.0	87.0	0.0	.	74	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24807655	24807655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIPK3	NM_006871	exon4	c.A590G	p.K197R	GAGGCCTTCCGGT	.	72.0	4.0	47.0	0.0	.	43	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31576779	31576779	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HECTD1	NM_015382	exon37	c.T6612C	p.S2204S	GTGACGAGATTCA	.	54.0	4.0	55.0	0.0	.	159	.	.	Atlas-SNP
NUBPL	80224	hgsc.bcm.edu	hg19	14	32142559	32142559	+	Splice_Site	SNP	A	A	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUBPL	NM_025152	exon5	c.383-2A>C	.	TTTTCCAGGCAAC	.	60.0	4.0	51.0	0.0	.	21	.	.	Atlas-SNP
PAX9	5083	hgsc.bcm.edu	hg19	14	37132384	37132384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAX9	NM_006194	exon3	c.G287A	p.G96D	ACCCCGGCATCTT	.	184.0	11.0	112.0	0.0	.	34	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64494280	64494280	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYNE2	NM_182914	exon43	c.A6483T	p.L2161L	AGAACTAAAGAAG	.	145.0	6.0	125.0	0.0	.	577	.	.	Atlas-SNP
GSTZ1	2954	hgsc.bcm.edu	hg19	14	77797449	77797449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GSTZ1	NM_145870	exon9	c.T562C	p.S188P	ATCAGCTCCATCA	.	136.0	6.0	114.0	0.0	.	35	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89206909	89206909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML5	NM_183387	exon5	c.G533A	p.S178N	CATAAACTCCAGA	.	121.0	6.0	116.0	0.0	.	141	.	.	Atlas-SNP
TDP1	55775	hgsc.bcm.edu	hg19	14	90446955	90446955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TDP1	NM_018319	exon8	c.A863G	p.D288G	ATGCTGACTGGCA	.	88.0	4.0	70.0	0.0	.	47	.	.	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	hg19	14	93022212	93022212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIN3	NM_024832	exon2	c.A161G	p.E54G	TCCTGGAGAAGCT	.	88.0	4.0	81.0	0.0	.	81	.	.	Atlas-SNP
KLC1	3831	hgsc.bcm.edu	hg19	14	104143836	104143836	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLC1	NM_182923	exon12	c.A1464G	p.E488E	AGAAGAAGCTGCT	.	82.0	4.0	43.0	0.0	.	54	.	.	Atlas-SNP
AKT1	207	hgsc.bcm.edu	hg19	14	105246536	105246536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKT1	NM_005163	exon3	c.T64C	p.W22R	GCCGCCAGGTCTT	.	153.0	7.0	127.0	0.0	.	379	.	.	Atlas-SNP
BRF1	2972	hgsc.bcm.edu	hg19	14	105676904	105676904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRF1	NM_001519	exon18	c.A2018G	p.E673G	TCGTCCTCATCGC	.	108.0	5.0	87.0	0.0	.	102	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34018695	34018695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RYR3	NM_001243996	exon46	c.T7021C	p.S2341P	CTGCCCTCCCTCA	.	108.0	6.0	79.0	0.0	.	760	.	.	Atlas-SNP
KATNBL1	79768	hgsc.bcm.edu	hg19	15	34455865	34455865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_024713	exon2	c.A13G	p.T5A	TGTGGGTTTCTGA	.	82.0	4.0	61.0	0.0	.	.	.	.	Atlas-SNP
FSIP1	161835	hgsc.bcm.edu	hg19	15	40031895	40031895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FSIP1	NM_152597	exon7	c.A751G	p.N251D	CCTGGTTGTGTTT	.	118.0	5.0	119.0	0.0	.	53	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	hg19	15	40914323	40914323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASC5	NM_170589	exon11	c.G1939A	p.E647K	CGTAATGAACCAT	.	97.0	4.0	95.0	0.0	.	269	.	.	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	hg19	15	41826958	41826958	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPAP1	NM_015540	exon6	c.T717C	p.A239A	CTCAGGAGCCATG	.	122.0	6.0	98.0	0.0	.	111	.	.	Atlas-SNP
CCNDBP1	23582	hgsc.bcm.edu	hg19	15	43483239	43483239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCNDBP1	NM_012142	exon7	c.A578G	p.Q193R	TGGAGCAGGTGAG	.	93.0	7.0	104.0	0.0	.	22	.	.	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45707941	45707941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA5L1	NM_024063	exon5	c.A1801G	p.T601A	CTTAAGACAATAG	.	79.0	4.0	64.0	0.0	.	40	.	.	Atlas-SNP
HDC	3067	hgsc.bcm.edu	hg19	15	50534669	50534669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDC	NM_002112	exon12	c.A1777G	p.S593G	GAGCACTCACTGG	.	104.0	6.0	101.0	0.0	.	86	.	.	Atlas-SNP
AP4E1	23431	hgsc.bcm.edu	hg19	15	51285814	51285814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AP4E1	NM_007347	exon17	c.A2338G	p.I780V	AGTACAATCAACC	.	84.0	4.0	75.0	0.0	.	78	.	.	Atlas-SNP
MNS1	55329	hgsc.bcm.edu	hg19	15	56723587	56723587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MNS1	NM_018365	exon9	c.T1379C	p.L460P	TAGCCTAGTAAGT	.	204.0	9.0	162.0	0.0	.	39	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62283910	62283910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS13C	NM_020821	exon17	c.A1445G	p.E482G	TTAGACTCTTTCT	.	147.0	6.0	143.0	0.0	.	506	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65676554	65676554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGDCC4	NM_020962	exon20	c.G3546T	p.R1182S	CAACTCCCTGTCC	.	178.0	62.0	143.0	0.0	.	95	.	.	Atlas-SNP
LRRC49	54839	hgsc.bcm.edu	hg19	15	71188254	71188254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC49	NM_001199017	exon3	c.A187G	p.R63G	CTTGAAAGAAACT	.	90.0	4.0	59.0	0.0	.	73	.	.	Atlas-SNP
ANKRD34C	390616	hgsc.bcm.edu	hg19	15	79586088	79586088	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD34C	NM_001146341	exon2	c.A462G	p.T154T	AACAACAGATAAA	.	124.0	5.0	110.0	0.0	.	29	.	.	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	hg19	15	84539614	84539614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTSL3	NM_207517	exon9	c.T863C	p.V288A	CCGGCGTCTTTCT	.	31.0	6.0	40.0	0.0	.	290	.	.	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	hg19	15	85400767	85400767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALPK3	NM_020778	exon6	c.A3404G	p.E1135G	GCAGTGAGGGGGC	.	97.0	4.0	96.0	0.0	.	289	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86207943	86207943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKAP13	NM_006738	exon13	c.A4961G	p.D1654G	AAGAGGATCTGGA	.	94.0	4.0	81.0	0.0	.	394	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93547897	93547897	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD2	NM_001271	exon34	c.T4329C	p.G1443G	TCAGGGTCCTGTC	.	104.0	5.0	100.0	0.0	.	280	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99434602	99434602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGF1R	NM_000875	exon3	c.G689A	p.C230Y	ATGAGTGCTGCCA	.	93.0	4.0	50.0	0.0	.	147	.	.	Atlas-SNP
TSR3	115939	hgsc.bcm.edu	hg19	16	1400082	1400082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001001410	exon4	c.A680G	p.E227G	GGGCTCTCCTTGG	.	129.0	6.0	70.0	0.0	.	.	.	.	Atlas-SNP
UNKL	64718	hgsc.bcm.edu	hg19	16	1449385	1449385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNKL	NM_001193388	exon5	c.T724C	p.F242L	ACTGGAACCGCCG	.	91.0	4.0	75.0	0.0	.	46	.	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	hg19	16	1719148	1719148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRAMP1L	NM_020825	exon18	c.T3481C	p.S1161P	GACTCCTCGCTCA	.	79.0	4.0	90.0	0.0	.	60	.	.	Atlas-SNP
ZNF598	90850	hgsc.bcm.edu	hg19	16	2048327	2048327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF598	NM_178167	exon14	c.T2621C	p.L874P	TGCGCGAGCACCT	.	75.0	4.0	96.0	0.0	.	55	.	.	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3085376	3085376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC64B	NM_001103175	exon1	c.G122T	p.G41V	CCTGGGCCCCCTC	.	134.0	7.0	97.0	0.0	.	19	.	.	Atlas-SNP
GLIS2	84662	hgsc.bcm.edu	hg19	16	4385330	4385330	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLIS2	NM_032575	exon5	c.T711C	p.C237C	CCGCTGTCCGACC	.	162.0	7.0	153.0	0.0	.	29	.	.	Atlas-SNP
VASN	114990	hgsc.bcm.edu	hg19	16	4432163	4432163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VASN	NM_138440	exon2	c.G1285A	p.A429T	CACCTGGCGTGCT	.	80.0	4.0	124.0	0.0	.	21	.	.	Atlas-SNP
CDR2	1039	hgsc.bcm.edu	hg19	16	22376296	22376296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDR2	NM_001802	exon2	c.A119G	p.D40G	TTCCGATCCAGTA	.	137.0	6.0	138.0	0.0	.	34	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27503691	27503691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GTF3C1	NM_001520	exon19	c.A3119G	p.D1040G	TGCAGGTCAAACC	.	170.0	8.0	115.0	0.0	.	210	.	.	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	hg19	16	31089058	31089058	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ZNF646,NS,carcinoma,0,1	ZNF646	NM_014699	exon2	c.T1413C	p.G471G	GTGTGGTCGTGCT	.	109.0	5.0	94.0	0.0	.	133	.	.	Atlas-SNP
PRSS36	146547	hgsc.bcm.edu	hg19	16	31152016	31152016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRSS36	NM_001258291	exon13	c.T1964C	p.L655P	TGTGGGAGGGAGC	.	194.0	9.0	133.0	0.0	.	50	.	.	Atlas-SNP
CETP	1071	hgsc.bcm.edu	hg19	16	57005938	57005938	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CETP	NM_000078	exon8	c.C693T	p.D231D	GGTGGACATTTCC	.	122.0	35.0	131.0	0.0	.	50	.	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	hg19	16	57063748	57063748	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRC5	NM_032206	exon8	c.A2307G	p.L769L	TCACCTACCACGG	.	100.0	4.0	106.0	0.0	.	186	.	.	Atlas-SNP
CTRL	1506	hgsc.bcm.edu	hg19	16	67963841	67963841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CTRL	NM_001907	exon7	c.A791G	p.N264S	GCTCAGTTGTAGG	.	97.0	4.0	92.0	0.0	.	11	.	.	Atlas-SNP
SLC12A4	6560	hgsc.bcm.edu	hg19	16	67985797	67985797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC12A4	NM_001145962	exon7	c.A1067G	p.D356G	TAGGGGTCACAGG	.	167.0	7.0	136.0	0.0	.	81	.	.	Atlas-SNP
NOB1	28987	hgsc.bcm.edu	hg19	16	69788569	69788569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOB1	NM_014062	exon2	c.A124G	p.T42A	TGCGTGTGGCCTT	.	104.0	5.0	63.0	0.0	.	24	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72829897	72829897	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFHX3	NM_006885	exon9	c.C6684G	p.P2228P	CGAAGGGGGCCGG	.	173.0	68.0	143.0	0.0	.	404	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88494980	88494980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF469	NM_001127464	exon1	c.T1102C	p.F368L	AGACCCTTCTCTG	.	111.0	5.0	74.0	0.0	.	121	.	.	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	hg19	16	88786816	88786816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIEZO1	NM_001142864	exon41	c.A5926G	p.I1976V	CAAAAATGATGAT	.	96.0	4.0	81.0	0.0	.	79	.	.	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	hg19	16	89294115	89294115	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF778	NM_001201407	exon7	c.A1419G	p.G473G	CACTGGAGAGAAA	.	59.0	5.0	53.0	0.0	.	67	.	.	Atlas-SNP
TCF25	22980	hgsc.bcm.edu	hg19	16	89972662	89972662	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCF25	NM_014972	exon15	c.G1689A	p.E563E	CTCTGAGATCAAG	.	92.0	4.0	103.0	0.0	.	61	.	.	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	hg19	17	1383903	1383903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	MYO1C	NM_001080779	exon7	c.T824C	p.V275A	GAGGAGACTTTGG	.	79.0	4.0	93.0	0.0	.	57	.	.	Atlas-SNP
TSR1	55720	hgsc.bcm.edu	hg19	17	2228075	2228075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSR1	NM_018128	exon13	c.A2069G	p.D690G	ATTCTGTCTGGAT	.	138.0	6.0	124.0	0.0	.	57	.	.	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2604059	2604059	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_015229	exon8	c.C972T	p.A324A	CTGGGGGGCTGTC	.	71.0	4.0	65.0	0.0	.	.	.	.	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	hg19	17	3854948	3854948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP2A3	NM_174956	exon4	c.C251G	p.T84S	GTCGTGGTCTCCT	.	167.0	103.0	222.0	0.0	.	148	.	.	Atlas-SNP
DVL2	1856	hgsc.bcm.edu	hg19	17	7132947	7132947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DVL2	NM_004422	exon6	c.A707G	p.H236R	CGCCGGTGGCGCT	.	81.0	4.0	89.0	0.0	.	49	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577557	7577557	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TP53_ENST00000545858,caecum,carcinoma,0,1	TP53	NM_000546	exon7	c.T724A	p.C242S	CCATGCAGGAACT	.	129.0	81.0	224.0	0.0	.	33396	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7809999	7809999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD3	NM_001005271	exon29	c.C4664A	p.S1555Y	TCATGTCTCTCGT	.	78.0	48.0	105.0	0.0	.	169	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11686973	11686973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH9	NM_001372	exon40	c.A7729G	p.S2577G	GATCGGAGCAAGC	.	109.0	5.0	84.0	0.0	.	695	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319360	21319360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	KCNJ12,NS,carcinoma,0,1	.	NM_001194958	exon3	c.C706T	p.R236W	AAGCCGCGGGTCA	.	236.0	23.0	190.0	1.0	.	.	.	.	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28407894	28407894	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EFCAB5	NM_198529	exon17	c.T3321C	p.P1107P	TCTGCCTCTTCAA	.	144.0	6.0	101.0	0.0	.	122	.	.	Atlas-SNP
MYO1D	4642	hgsc.bcm.edu	hg19	17	30965824	30965824	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO1D	NM_015194	exon20	c.A2625G	p.R875R	AATTGCTCTGTCT	.	184.0	8.0	164.0	0.0	.	93	.	.	Atlas-SNP
HNF1B	6928	hgsc.bcm.edu	hg19	17	36104535	36104535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNF1B	NM_001165923	exon1	c.T341C	p.L114P	TACCTGAGCATCC	.	61.0	4.0	47.0	0.0	.	61	.	.	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37868282	37868282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERBB2	NM_004448	exon8	c.A1003G	p.S335G	AAGTGCAGCAAGC	.	89.0	4.0	92.0	0.0	.	429	.	.	Atlas-SNP
ATP6V0A1	535	hgsc.bcm.edu	hg19	17	40635054	40635054	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP6V0A1	NM_001130021	exon9	c.717-2A>G	.	TATTCCAGGTTCC	.	80.0	4.0	67.0	0.0	.	67	.	.	Atlas-SNP
ADAM11	4185	hgsc.bcm.edu	hg19	17	42854589	42854589	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM11	NM_002390	exon21	c.G1737C	p.G579G	GCGTGGGAGCTGT	.	69.0	19.0	68.0	0.0	.	118	.	.	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	hg19	17	44109416	44109416	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001193466	exon14	c.A3087G	p.E1029E	TACCTGTTCATCC	.	79.0	4.0	82.0	0.0	.	.	.	.	Atlas-SNP
PHB	5245	hgsc.bcm.edu	hg19	17	47486764	47486764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHB	NM_002634	exon4	c.A322G	p.T108A	TGCTGGTGAAGAT	.	97.0	5.0	60.0	0.0	.	25	.	.	Atlas-SNP
PHB	5245	hgsc.bcm.edu	hg19	17	47489105	47489105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHB	NM_002634	exon3	c.A185G	p.Q62R	GGTTTCTGTACCC	.	89.0	26.0	84.0	0.0	.	25	.	.	Atlas-SNP
ACSF2	80221	hgsc.bcm.edu	hg19	17	48541615	48541615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACSF2	NM_025149	exon10	c.T1175C	p.I392T	AGTTGATCCGAGC	.	131.0	6.0	93.0	0.0	.	46	.	.	Atlas-SNP
MYCBPAP	84073	hgsc.bcm.edu	hg19	17	48598485	48598485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYCBPAP	NM_032133	exon8	c.A1060G	p.R354G	GCCCAGAGGGACG	.	57.0	4.0	51.0	0.0	.	135	.	.	Atlas-SNP
ANKFN1	162282	hgsc.bcm.edu	hg19	17	54428175	54428175	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKFN1	NM_153228	exon4	c.T246C	p.C82C	TCTCTGTCAGTCA	.	106.0	5.0	102.0	0.0	.	115	.	.	Atlas-SNP
OR4D2	124538	hgsc.bcm.edu	hg19	17	56247313	56247313	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR4D2	NM_001004707	exon1	c.T297C	p.G99G	CATGGGTCAGATC	.	100.0	4.0	46.0	0.0	.	48	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60028243	60028243	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MED13	NM_005121	exon28	c.T6234C	p.P2078P	CCAGTCAGGTAAT	.	84.0	4.0	66.0	0.0	.	181	.	.	Atlas-SNP
KPNA2	3838	hgsc.bcm.edu	hg19	17	66038453	66038453	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KPNA2	NM_002266	exon5	c.T555C	p.A185A	CTGGGCTCTAGGA	.	71.0	4.0	62.0	0.0	.	55	.	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67092459	67092459	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCA6	NM_080284	exon25	c.C3330T	p.V1110V	GAAGAAGACAAGA	.	104.0	5.0	64.0	0.0	.	210	.	.	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	hg19	17	72350520	72350520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF19	NM_153209	exon18	c.A2528G	p.E843G	CCAGTGAGGACAA	.	60.0	5.0	94.0	0.0	.	102	.	.	Atlas-SNP
C17orf77	146723	hgsc.bcm.edu	hg19	17	72588775	72588775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C17orf77	NM_152460	exon3	c.T590C	p.L197P	CAGGACTCACACC	.	124.0	6.0	103.0	0.0	.	31	.	.	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74383312	74383312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPHK1	NM_182965	exon6	c.A1058G	p.H353R	ACTCGCACCTGGG	.	132.0	6.0	62.0	0.0	.	24	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78261894	78261894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF213	NM_001256071	exon4	c.A542G	p.E181G	TGGGAGAGGCAGG	.	104.0	5.0	69.0	0.0	.	766	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8085685	8085685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRM	NM_001105244	exon10	c.T1568C	p.V523A	AAGCAGTCAGTTC	.	147.0	6.0	106.0	0.0	.	185	.	.	Atlas-SNP
DSC3	1825	hgsc.bcm.edu	hg19	18	28604328	28604328	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSC3	NM_024423	exon6	c.A762G	p.E254E	ACTACTTTCCAAA	.	53.0	5.0	40.0	0.0	.	225	.	.	Atlas-SNP
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29432603	29432603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRAPPC8	NM_014939	exon23	c.A3457G	p.K1153E	TTCCCTTCTCCCT	.	69.0	4.0	68.0	0.0	.	126	.	.	Atlas-SNP
MBD1	4152	hgsc.bcm.edu	hg19	18	47801526	47801526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD1	NM_001204137	exon10	c.A957G	p.P319P	CTGTGATGGGGGT	.	95.0	36.0	85.0	0.0	.	228	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56018257	56018257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEDD4L	NM_001144967	exon18	c.G1688A	p.R563Q	ATGGCCGAACGTT	.	96.0	7.0	60.0	0.0	.	126	.	.	Atlas-SNP
TMX3	54495	hgsc.bcm.edu	hg19	18	66377317	66377317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMX3	NM_019022	exon4	c.A206G	p.E69G	TTCATCTCAAGAC	.	114.0	5.0	83.0	0.0	.	44	.	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	hg19	19	5258114	5258114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRS	NM_002850	exon8	c.A620G	p.E207G	GTTTCCTCACTGC	.	137.0	6.0	149.0	0.0	.	169	.	.	Atlas-SNP
TRIP10	9322	hgsc.bcm.edu	hg19	19	6751209	6751209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIP10	NM_004240	exon14	c.T1625C	p.V542A	TCCGAGTCACGCT	.	134.0	6.0	110.0	0.0	.	104	.	.	Atlas-SNP
INSR	3643	hgsc.bcm.edu	hg19	19	7152932	7152932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INSR	NM_000208	exon10	c.A2036G	p.K679R	GGCAGCTTCAGCC	.	67.0	4.0	58.0	0.0	.	265	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9089471	9089471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon1	c.C2344G	p.P782A	TTTCAGGACTTGT	.	158.0	66.0	111.0	0.0	.	4315	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11099991	11099991	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA4	NM_003072	exon7	c.1119-2A>G	.	GCTCCCAGGCTGC	.	123.0	5.0	103.0	0.0	.	502	.	.	Atlas-SNP
ZNF44	51710	hgsc.bcm.edu	hg19	19	12383437	12383437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF44	NM_001164276	exon5	c.T1777C	p.S593P	GGAAAGAGGGCCA	.	76.0	4.0	59.0	0.0	.	55	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13394203	13394203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA1A	NM_001127221	exon22	c.C3703T	p.R1235C	ACAGGCGGCGAAG	.	236.0	76.0	179.0	0.0	.	715	.	.	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14023137	14023137	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CC2D1A	NM_017721	exon3	c.T198C	p.G66G	GCCAGGTCCCTTG	.	81.0	4.0	62.0	0.0	.	67	.	.	Atlas-SNP
OR10H2	26538	hgsc.bcm.edu	hg19	19	15838973	15838973	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	OR10H2,NS,carcinoma,0,1	OR10H2	NM_013939	exon1	c.G120A	p.L40L	GCTGCTGGGCAAC	.	363.0	0.0	277.0	0.0	.	59	.	.	Atlas-SNP
EPS15L1	58513	hgsc.bcm.edu	hg19	19	16524615	16524615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPS15L1	NM_021235	exon13	c.A1235G	p.E412G	ATTGCCTCTTCCT	.	212.0	9.0	214.0	0.0	.	81	.	.	Atlas-SNP
FCHO1	23149	hgsc.bcm.edu	hg19	19	17897403	17897403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FCHO1	NM_001161358	exon26	c.T2447C	p.L816P	AGCGGCTCACTTG	.	89.0	4.0	49.0	0.0	.	69	.	.	Atlas-SNP
ZNF675	171392	hgsc.bcm.edu	hg19	19	23837367	23837367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF675	NM_138330	exon4	c.A368G	p.K123R	TGCAACTTACATT	.	123.0	5.0	102.0	0.0	.	88	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36252918	36252918	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C19orf55	NM_001039887	exon4	c.312-2A>G	.	GTTCACAGGTATA	.	79.0	5.0	70.0	0.0	.	39	.	.	Atlas-SNP
C19orf55	148137	hgsc.bcm.edu	hg19	19	36258938	36258938	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,11	C19orf55	NM_001039887	exon9	c.1190+1G>A	.	TGCCCAGGGCCGC	.	26.0	4.0	16.0	0.0	.	39	.	.	Atlas-SNP
ZNF607	84775	hgsc.bcm.edu	hg19	19	38190282	38190282	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF607	NM_032689	exon5	c.G750A	p.E250E	GGGCTTCTCACCA	.	116.0	5.0	83.0	0.0	.	82	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38384513	38384513	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR87	NM_031951	exon4	c.A1713T	p.T571T	AAAGGATGTGATG	.	79.0	4.0	61.0	0.0	.	191	.	.	Atlas-SNP
ZNF780A	284323	hgsc.bcm.edu	hg19	19	40589113	40589113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF780A	NM_001142579	exon5	c.A89G	p.D30G	GAGAAGTCAATGG	.	135.0	7.0	104.0	0.0	.	156	.	.	Atlas-SNP
EGLN2	112398	hgsc.bcm.edu	hg19	19	41306911	41306911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EGLN2	NM_053046	exon2	c.A434G	p.E145G	AGGCAGAGCGGGA	.	203.0	11.0	179.0	0.0	.	31	.	.	Atlas-SNP
CXCL17	284340	hgsc.bcm.edu	hg19	19	42937936	42937936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CXCL17	NM_198477	exon2	c.A152G	p.E51G	TTGCACTCACATT	.	111.0	5.0	99.0	0.0	.	8	.	.	Atlas-SNP
ZNF230	7773	hgsc.bcm.edu	hg19	19	44511161	44511161	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF230	.	.	.	.	TTTTCCAGGCACA	.	121.0	6.0	125.0	0.0	.	44	.	.	Atlas-SNP
ZNF284	342909	hgsc.bcm.edu	hg19	19	44590888	44590888	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF284	NM_001037813	exon5	c.A1257G	p.R419R	TCAGAGAGCCTAT	.	117.0	6.0	119.0	0.0	.	38	.	.	Atlas-SNP
PVRL2	5819	hgsc.bcm.edu	hg19	19	45375206	45375206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PVRL2	NM_002856	exon3	c.C575T	p.A192V	CACCTGCCCGGAT	.	112.0	15.0	102.0	0.0	.	58	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	hg19	19	48305864	48305864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPRX1	NM_198479	exon2	c.T404C	p.I135T	CCTGGGATTGGGG	.	136.0	6.0	108.0	0.0	.	46	.	.	Atlas-SNP
LIG1	3978	hgsc.bcm.edu	hg19	19	48665558	48665558	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIG1	NM_000234	exon3	c.A68G	p.E23G	GATGCCTCCTTCT	.	102.0	5.0	90.0	0.0	.	151	.	.	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	hg19	19	50148321	50148321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCAF1	NM_021228	exon2	c.A38G	p.E13G	CAGAGGAGTCGGG	.	85.0	6.0	60.0	0.0	.	78	.	.	Atlas-SNP
CEACAM18	729767	hgsc.bcm.edu	hg19	19	51981947	51981947	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CEACAM18_ENST00000451626,NS,chondrosarcoma,0,1	CEACAM18	NM_001080405	exon2	c.G234C	p.M78I	CCTCATGGGTAAG	.	72.0	0.0	40.0	0.0	.	96	.	.	Atlas-SNP
KIR2DL3	3804	hgsc.bcm.edu	hg19	19	55263169	55263169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIR2DL3	NM_015868	exon6	c.T784C	p.F262L	CTCCTCTTCTTTC	.	116.0	5.0	48.0	0.0	.	68	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55508725	55508725	+	Missense_Mutation	SNP	C	C	A	rs61735074	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NLRP2	NM_017852	exon12	c.C2920A	p.L974I	GAAGACCTCTGCT	.	316.0	156.0	232.0	0.0	.	161	.	C|0.981;G|0.019	Atlas-SNP
ZNF446	55663	hgsc.bcm.edu	hg19	19	58989035	58989035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF446	NM_017908	exon3	c.T374C	p.L125P	AGGTGCTCCCTGC	.	135.0	6.0	106.0	0.0	.	22	.	.	Atlas-SNP
C20orf194	25943	hgsc.bcm.edu	hg19	20	3285095	3285095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C20orf194	NM_001009984	exon21	c.T1774C	p.Y592H	CATCATAGAAGGA	.	98.0	4.0	69.0	0.0	.	83	.	.	Atlas-SNP
RASSF2	9770	hgsc.bcm.edu	hg19	20	4776514	4776514	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RASSF2	NM_014737	exon5	c.A234G	p.R78R	AGGGGGTCGAATG	.	121.0	5.0	73.0	0.0	.	75	.	.	Atlas-SNP
ANKEF1	63926	hgsc.bcm.edu	hg19	20	10032309	10032309	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_022096	exon8	c.1644-2A>G	.	TTTTACAGAGCTA	.	98.0	6.0	87.0	0.0	.	.	.	.	Atlas-SNP
ZNF133	7692	hgsc.bcm.edu	hg19	20	18296753	18296753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF133	NM_001083330	exon4	c.A1255G	p.S419G	AGCTTCAGCCAGA	.	81.0	4.0	70.0	0.0	.	63	.	.	Atlas-SNP
NAPB	63908	hgsc.bcm.edu	hg19	20	23383704	23383704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAPB	NM_022080	exon2	c.A104G	p.N35S	CTTGTGTTTCCTC	.	92.0	4.0	68.0	0.0	.	22	.	.	Atlas-SNP
CBFA2T2	9139	hgsc.bcm.edu	hg19	20	32212691	32212691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CBFA2T2	NM_005093	exon7	c.G841T	p.G281W	AATCCCGGGGGCC	.	151.0	7.0	106.0	0.0	.	93	.	.	Atlas-SNP
GSS	2937	hgsc.bcm.edu	hg19	20	33530430	33530430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GSS	NM_000178	exon5	c.A352G	p.T118A	ACACAGTCTGTGG	.	116.0	5.0	79.0	0.0	.	33	.	.	Atlas-SNP
CDH22	64405	hgsc.bcm.edu	hg19	20	44839091	44839091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH22	NM_021248	exon7	c.G1141A	p.V381M	CGCGCACGATCGC	.	128.0	58.0	89.0	0.0	.	112	.	.	Atlas-SNP
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51872669	51872669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSHZ2	NM_173485	exon2	c.T2672C	p.L891P	CGGGACTCTCAAT	.	98.0	4.0	92.0	0.0	.	209	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52193705	52193705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF217	NM_006526	exon3	c.T1598C	p.V533A	TTCTTGACTTCAG	.	93.0	4.0	75.0	0.0	.	227	.	.	Atlas-SNP
OSBPL2	9885	hgsc.bcm.edu	hg19	20	60861769	60861769	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL2	NM_144498	exon11	c.1125+2T>C	.	CCCAGGTCTGTGT	.	76.0	4.0	58.0	0.0	.	51	.	.	Atlas-SNP
PRPF6	24148	hgsc.bcm.edu	hg19	20	62614445	62614445	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PRPF6	NM_012469	exon2	c.T117C	p.D39D	CCGTGATGCAAAT	.	117.0	5.0	89.0	0.0	.	88	.	.	Atlas-SNP
APP	351	hgsc.bcm.edu	hg19	21	27354754	27354754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	APP,NS,carcinoma,0,1	APP	NM_000484	exon9	c.A1127G	p.D376G	TACTTGTCAACGG	.	94.0	4.0	91.0	0.0	.	90	.	.	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	hg19	21	41151128	41151128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF5	NM_001080444	exon5	c.T830C	p.L277P	TGCTTCTGACGCC	.	94.0	4.0	103.0	0.0	.	62	.	.	Atlas-SNP
C2CD2	25966	hgsc.bcm.edu	hg19	21	43362260	43362260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2CD2	NM_015500	exon2	c.A374G	p.E125G	ACCTTCTCCTCCG	.	111.0	6.0	161.0	0.0	.	47	.	.	Atlas-SNP
WDR4	10785	hgsc.bcm.edu	hg19	21	44282502	44282502	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR4	NM_018669	exon5	c.T456C	p.A152A	ACTCACAGCCTGC	.	43.0	4.0	41.0	0.0	.	35	.	.	Atlas-SNP
NDUFV3	4731	hgsc.bcm.edu	hg19	21	44323563	44323563	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDUFV3	NM_021075	exon3	c.A441G	p.K147K	TCGGAAAGTGACG	.	91.0	4.0	109.0	0.0	.	23	.	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46899863	46899863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL18A1	NM_030582	exon9	c.T1836C	p.G612G	CGTAGGTCCCAAG	.	60.0	4.0	67.0	0.0	.	129	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47685325	47685325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCM3AP	NM_003906	exon12	c.A3144G	p.A1048A	GGTCAGTGCCAGG	.	66.0	4.0	78.0	0.0	.	146	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19217362	19217362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLTCL1	NM_001835	exon11	c.A1781G	p.Q594R	CTGACCTGGGGTG	.	93.0	4.0	66.0	0.0	.	115	.	.	Atlas-SNP
ARVCF	421	hgsc.bcm.edu	hg19	22	19959474	19959474	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARVCF	NM_001670	exon18	c.C2716A	p.R906R	CCCTCCGGTCCAC	.	88.0	6.0	47.0	0.0	.	54	.	.	Atlas-SNP
AIFM3	150209	hgsc.bcm.edu	hg19	22	21328152	21328152	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIFM3	NM_001146288	exon4	c.G369T	p.V123V	CCTGGTGAAAGGT	.	113.0	34.0	63.0	0.0	.	49	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22842944	22842944	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF280B	NM_080764	exon4	c.A780T	p.A260A	TGTTTTTGCCAAT	.	100.0	17.0	81.0	0.0	.	67	.	.	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24726381	24726381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPECC1L	NM_001145468	exon7	c.A2378G	p.E793G	AATTGGAGGAAAT	.	82.0	4.0	67.0	0.0	.	85	.	.	Atlas-SNP
MTMR3	8897	hgsc.bcm.edu	hg19	22	30387534	30387534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTMR3	NM_021090	exon7	c.A335G	p.K112R	GGCTGAAGAGACT	.	79.0	5.0	68.0	0.0	.	106	.	.	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31334114	31334114	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MORC2	NM_014941	exon14	c.C966T	p.I322I	GTTGTAGATGAAC	.	155.0	7.0	137.0	0.0	.	78	.	.	Atlas-SNP
C22orf28	51493	hgsc.bcm.edu	hg19	22	32789991	32789991	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C22orf28	NM_014306	exon11	c.1180-2A>G	.	GTGAGCTGAGGAT	.	75.0	4.0	56.0	0.0	.	43	.	.	Atlas-SNP
BPIFC	254240	hgsc.bcm.edu	hg19	22	32811918	32811918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_174932	exon14	c.A1385G	p.D462G	TCAATATCTGAAT	.	99.0	4.0	68.0	0.0	.	.	.	.	Atlas-SNP
SSTR3	6753	hgsc.bcm.edu	hg19	22	37602587	37602587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SSTR3	NM_001051	exon2	c.A1256G	p.X419W	AGGCCCTACAGGT	.	60.0	5.0	58.0	0.0	.	42	.	.	Atlas-SNP
CYTH4	27128	hgsc.bcm.edu	hg19	22	37709517	37709517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYTH4	NM_013385	exon13	c.T1150C	p.S384P	CTGGTCTCTACTC	.	146.0	6.0	129.0	0.0	.	51	.	.	Atlas-SNP
RANGAP1	5905	hgsc.bcm.edu	hg19	22	41645369	41645369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RANGAP1	NM_002883	exon15	c.G1659T	p.K553N	AAGGGCCTTGGGG	.	99.0	17.0	91.0	0.0	.	47	.	.	Atlas-SNP
POLDIP3	84271	hgsc.bcm.edu	hg19	22	42991558	42991558	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLDIP3	NM_032311	exon6	c.T876C	p.T292T	CTCCTCAGTGACT	.	170.0	7.0	146.0	0.0	.	58	.	.	Atlas-SNP
PARVG	64098	hgsc.bcm.edu	hg19	22	44587943	44587943	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PARVG,NS,carcinoma,0,1	PARVG	NM_001137606	exon8	c.T519C	p.G173G	AAGTGGTCTGAAG	.	82.0	4.0	53.0	0.0	.	41	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46777807	46777807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CELSR1	NM_014246	exon21	c.A7024G	p.I2342V	AAATGATGACCAG	.	88.0	4.0	80.0	0.0	.	242	.	.	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	hg19	22	50187702	50187702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	BRD1_ENST00000342989,NS,carcinoma,0,2	BRD1	NM_014577	exon6	c.G2339T	p.G780V	TCCGGCCCCAGCG	.	58.0	43.0	67.0	0.0	.	144	.	.	Atlas-SNP
BRD1	23774	hgsc.bcm.edu	hg19	22	50187703	50187703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRD1	NM_014577	exon6	c.G2338T	p.G780W	CCGGCCCCAGCGC	.	57.0	42.0	67.0	0.0	.	144	.	.	Atlas-SNP
MAPK12	6300	hgsc.bcm.edu	hg19	22	50695539	50695539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAPK12	NM_002969	exon4	c.T398C	p.L133P	TACACGAGGAACT	.	71.0	4.0	98.0	0.0	.	43	.	.	Atlas-SNP
MIOX	55586	hgsc.bcm.edu	hg19	22	50928027	50928027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	MIOX,colon,carcinoma,0,1	MIOX	NM_017584	exon9	c.T703A	p.C235S	CAGCTGTGCAGCC	.	128.0	0.0	124.0	0.0	.	21	.	.	Atlas-SNP
SHROOM2	357	hgsc.bcm.edu	hg19	X	9900715	9900715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHROOM2	NM_001649	exon6	c.T3392C	p.V1131A	CCACTGTCTGTGA	.	88.0	4.0	70.0	0.0	.	139	.	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	hg19	X	18593549	18593549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKL5	NM_003159	exon5	c.A221G	p.E74G	TTGTGGAGTTGAA	.	97.0	5.0	105.0	0.0	.	124	.	.	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23411677	23411677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTCHD1	NM_173495	exon3	c.T2042C	p.V681A	TCATCGTCTTCAA	.	113.0	5.0	74.0	0.0	.	213	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	hg19	X	24741325	24741325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLA1	NM_016937	exon11	c.A1123G	p.S375G	CATGTGAGCTGTT	.	178.0	8.0	139.0	0.0	.	117	.	.	Atlas-SNP
POLA1	5422	hgsc.bcm.edu	hg19	X	24844595	24844595	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLA1	NM_016937	exon32	c.C3595T	p.Q1199X	CAGCTGCAGAAAC	.	73.0	4.0	77.0	0.0	.	117	.	.	Atlas-SNP
XK	7504	hgsc.bcm.edu	hg19	X	37553772	37553772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XK	NM_021083	exon2	c.T479C	p.V160A	TAAGTGTCATGCA	.	115.0	5.0	100.0	0.0	.	48	.	.	Atlas-SNP
ZNF674	641339	hgsc.bcm.edu	hg19	X	46401522	46401522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF674	NM_001146291	exon3	c.A1G	p.M1V	TGGCCATCTTGTT	.	78.0	4.0	38.0	0.0	.	3	.	.	Atlas-SNP
ZNF41	7592	hgsc.bcm.edu	hg19	X	47307869	47307869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF41	NM_007130	exon5	c.A1300G	p.T434A	CTCCCGTGTGGAT	.	63.0	4.0	54.0	0.0	.	71	.	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53264288	53264288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IQSEC2	NM_001111125	exon15	c.A3580G	p.S1194G	TCTGGCTCTTGTA	.	68.0	4.0	47.0	0.0	.	195	.	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54263832	54263832	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WNK3	NM_020922	exon20	c.T4167C	p.N1389N	TTTTGGATTTTGT	.	41.0	4.0	49.0	0.0	.	218	.	.	Atlas-SNP
USP51	158880	hgsc.bcm.edu	hg19	X	55514365	55514365	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP51	NM_201286	exon2	c.T1008C	p.C336C	TGTCTCACAGGTT	.	114.0	5.0	98.0	0.0	.	71	.	.	Atlas-SNP
GPR174	84636	hgsc.bcm.edu	hg19	X	78427231	78427231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR174	NM_032553	exon1	c.T727C	p.F243L	ATTTGCTTTGCAC	.	86.0	4.0	101.0	0.0	.	79	.	.	Atlas-SNP
CHM	1121	hgsc.bcm.edu	hg19	X	85282510	85282510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHM	NM_001145414	exon2	c.T101C	p.V34A	TGCAGAACTCTCC	.	124.0	5.0	92.0	0.0	.	57	.	.	Atlas-SNP
TAF7L	54457	hgsc.bcm.edu	hg19	X	100524209	100524209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAF7L	NM_024885	exon13	c.A1361G	p.E454G	AACTGTTCCTGTA	.	100.0	4.0	70.0	0.0	.	64	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	CCGTTGTCCCCTT	.	163.0	11.0	62.0	0.0	.	27	.	.	Atlas-SNP
TCEAL6	158931	hgsc.bcm.edu	hg19	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	TGTCCCCTTGGGC	.	155.0	17.0	60.0	0.0	.	27	.	.	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	hg19	X	107448673	107448673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL4A6	NM_001847	exon11	c.T686C	p.V229A	ACCTTGACTCCTT	.	99.0	5.0	59.0	0.0	.	270	.	.	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	hg19	X	114424452	114424452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RBMXL3	NM_001145346	exon1	c.C448T	p.R150C	AGGAAGCGCGGGC	.	10.0	8.0	14.0	0.0	.	83	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122336608	122336608	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRIA3	NM_001256743	exon3	c.C389G	p.A130G	GGCCCGCCAAAAC	.	82.0	5.0	51.0	0.0	.	386	.	.	Atlas-SNP
GPC4	2239	hgsc.bcm.edu	hg19	X	132438856	132438856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC4	NM_001448	exon7	c.A1189G	p.K397E	ATTTCTTGGCCTG	.	84.0	4.0	76.0	0.0	.	58	.	.	Atlas-SNP
ZNF449	203523	hgsc.bcm.edu	hg19	X	134481371	134481371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF449	NM_152695	exon2	c.A328G	p.R110G	TTACAGAGAGAAC	.	76.0	4.0	60.0	0.0	.	68	.	.	Atlas-SNP
HMGB3	3149	hgsc.bcm.edu	hg19	X	150155773	150155773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HMGB3	NM_005342	exon4	c.A463G	p.K155E	TATGAGAAGGTAA	.	83.0	4.0	54.0	0.0	.	27	.	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	hg19	X	154088732	154088732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	F8	NM_000132	exon25	c.T6875C	p.L2292P	AAAAAGAGAGTCC	.	77.0	4.0	72.0	0.0	.	646	.	.	Atlas-SNP
F8	2157	hgsc.bcm.edu	hg19	X	154157276	154157276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	F8	NM_000132	exon14	c.G4789A	p.E1597K	ACTCTTCTTTTGG	.	136.0	7.0	116.0	0.0	.	646	.	.	Atlas-SNP
ATP8	0	hgsc.bcm.edu	hg19	MT	8430	8430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	ENST00000361851	exon1	c.T65C	p.L22P	TATTCCTCATCAC	.	7.0	7.0	69.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13595	13595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	ENST00000361567	exon1	c.G1259A	p.S420N	TGACAAGCGCCTA	.	17.0	12.0	92.0	0.0	.	.	.	.	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	hg19	22	45789663	45789663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMC1B	NM_148674	exon9	c.1397delC	p.T466fs	.	.	183.0	14.0	122.0	0.0	.	215	.	.	Atlas-INDEL
OR8A1	390275	hgsc.bcm.edu	hg19	11	124440280	124440280	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR8A1	NM_001005194	exon1	c.315delG	p.E105fs	.	.	190.0	13.0	123.0	0.0	.	61	.	.	Atlas-INDEL
GZMM	3004	hgsc.bcm.edu	hg19	19	549133	549133	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GZMM	NM_005317	exon4	c.559delT	p.S187fs	.	.	154.0	10.0	137.0	0.0	.	11	.	.	Atlas-INDEL
OR7C2	26658	hgsc.bcm.edu	hg19	19	15052711	15052711	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR7C2	NM_012377	exon1	c.410delA	p.N137fs	.	.	202.0	14.0	190.0	0.0	.	50	.	.	Atlas-INDEL
ARNT	405	hgsc.bcm.edu	hg19	1	150789283	150789283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARNT	NM_001668	exon18	c.1784delG	p.R595fs	.	.	213.0	14.0	123.0	0.0	.	68	.	.	Atlas-INDEL
PPP3CB	5532	hgsc.bcm.edu	hg19	10	75230481	75230481	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PPP3CB,caecum,carcinoma,0,1	PPP3CB	NM_001142354	exon8	c.947delC	p.S316fs	.	.	165.0	10.0	127.0	0.0	.	68	.	.	Atlas-INDEL
SF3A3	10946	hgsc.bcm.edu	hg19	1	38442595	38442595	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SF3A3	NM_006802	exon12	c.967delC	p.L323X	.	.	209.0	14.0	170.0	0.0	.	37	.	.	Atlas-INDEL
RXRB	6257	hgsc.bcm.edu	hg19	6	33166144	33166144	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RXRB	NM_021976	exon3	c.582delT	p.P194fs	.	.	137.0	11.0	101.0	0.0	.	34	.	.	Atlas-INDEL
FBXO28	23219	hgsc.bcm.edu	hg19	1	224345442	224345442	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO28	NM_015176	exon5	c.1100delG	p.R367fs	.	.	124.0	10.0	47.0	0.0	.	34	.	.	Atlas-INDEL
ADAMTS8	11095	hgsc.bcm.edu	hg19	11	130297563	130297563	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS8	NM_007037	exon1	c.620delC	p.A207fs	.	.	166.0	10.0	83.0	0.0	.	172	.	.	Atlas-INDEL
NAPSA	9476	hgsc.bcm.edu	hg19	19	50868809	50868809	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAPSA	NM_004851	exon1	c.71delC	p.A24fs	.	.	170.0	13.0	71.0	0.0	.	38	.	.	Atlas-INDEL
SUPT7L	9913	hgsc.bcm.edu	hg19	2	27883855	27883855	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUPT7L	NM_014860	exon3	c.416delA	p.Y139fs	.	.	157.0	10.0	175.0	0.0	.	36	.	.	Atlas-INDEL
GLB1L3	112937	hgsc.bcm.edu	hg19	11	134152001	134152001	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLB1L3	NM_001080407	exon5	c.513delC	p.L171fs	.	.	202.0	14.0	142.0	0.0	.	102	.	.	Atlas-INDEL
RCOR2	283248	hgsc.bcm.edu	hg19	11	63679557	63679557	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCOR2	NM_173587	exon12	c.1353delG	p.P451fs	.	.	153.0	10.0	142.0	0.0	.	43	.	.	Atlas-INDEL
MRPL16	54948	hgsc.bcm.edu	hg19	11	59575183	59575183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MRPL16	NM_017840	exon3	c.262delG	p.A88fs	.	.	216.0	13.0	170.0	0.0	.	25	.	.	Atlas-INDEL
DNM3	26052	hgsc.bcm.edu	hg19	1	172356459	172356459	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNM3	NM_015569	exon19	c.2244delA	p.A748fs	.	.	143.0	12.0	100.0	0.0	.	85	.	.	Atlas-INDEL
PCDHB5	26167	hgsc.bcm.edu	hg19	5	140515047	140515047	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDHB5	NM_015669	exon1	c.30delG	p.Q10fs	.	.	229.0	14.0	200.0	0.0	.	184	.	.	Atlas-INDEL
RLTPR	146206	hgsc.bcm.edu	hg19	16	67688777	67688777	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RLTPR	NM_001013838	exon32	c.3678delC	p.S1226fs	.	.	141.0	13.0	121.0	0.0	.	124	.	.	Atlas-INDEL
KIF15	56992	hgsc.bcm.edu	hg19	3	44882704	44882704	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF15	NM_020242	exon29	c.3558delC	p.V1186fs	.	.	127.0	11.0	94.0	0.0	.	103	.	.	Atlas-INDEL
UGDH	7358	hgsc.bcm.edu	hg19	4	39515764	39515764	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UGDH	NM_001184700	exon3	c.204delT	p.N68fs	.	.	155.0	10.0	134.0	0.0	.	52	.	.	Atlas-INDEL
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65351025	65351025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EHBP1L1	NM_001099409	exon9	c.2881delG	p.V961fs	.	.	190.0	13.0	115.0	0.0	.	64	.	.	Atlas-INDEL
ROS1	6098	hgsc.bcm.edu	hg19	6	117683915	117683915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ROS1	NM_002944	exon21	c.3233delT	p.V1078fs	.	.	165.0	10.0	131.0	0.0	.	728	.	.	Atlas-INDEL
RPF1	80135	hgsc.bcm.edu	hg19	1	84945079	84945079	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPF1	NM_025065	exon1	c.114delC	p.N38fs	.	.	155.0	10.0	136.0	0.0	.	31	.	.	Atlas-INDEL
MCHR2	84539	hgsc.bcm.edu	hg19	6	100395834	100395834	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCHR2	NM_001040179	exon3	c.197delC	p.T66fs	.	.	184.0	13.0	149.0	0.0	.	97	.	.	Atlas-INDEL
GLI3	2737	hgsc.bcm.edu	hg19	7	42006102	42006102	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLI3	NM_000168	exon15	c.2570delC	p.A857fs	.	.	154.0	10.0	145.0	0.0	.	312	.	.	Atlas-INDEL
AIM1	202	hgsc.bcm.edu	hg19	6	106967727	106967727	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIM1	NM_001624	exon2	c.1419delT	p.P473fs	.	.	183.0	11.0	134.0	0.0	.	161	.	.	Atlas-INDEL
ERCC1	2067	hgsc.bcm.edu	hg19	19	45916842	45916842	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ERCC1	NM_202001	exon8	c.937delG	p.E313fs	.	.	166.0	10.0	132.0	0.0	.	46	.	.	Atlas-INDEL
DMBX1	127343	hgsc.bcm.edu	hg19	1	46976722	46976722	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMBX1	NM_147192	exon3	c.463delG	p.A155fs	.	.	198.0	14.0	165.0	0.0	.	50	.	.	Atlas-INDEL
SMYD5	10322	hgsc.bcm.edu	hg19	2	73452036	73452036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMYD5	NM_006062	exon11	c.982delG	p.E328fs	.	.	133.0	11.0	131.0	0.0	.	58	.	.	Atlas-INDEL
USP13	8975	hgsc.bcm.edu	hg19	3	179501906	179501906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP13	NM_003940	exon21	c.2568delC	p.Y856fs	.	.	166.0	10.0	179.0	0.0	.	117	.	.	Atlas-INDEL
MAPK11	5600	hgsc.bcm.edu	hg19	22	50704089	50704089	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAPK11	NM_002751	exon10	c.764delC	p.A255fs	.	.	148.0	10.0	135.0	0.0	.	23	.	.	Atlas-INDEL
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120346091	120346091	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF12	NM_015313	exon33	c.3151delC	p.Q1051fs	.	.	228.0	14.0	126.0	0.0	.	133	.	.	Atlas-INDEL
ADORA1	134	hgsc.bcm.edu	hg19	1	203134406	203134406	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADORA1	NM_001048230	exon3	c.358delA	p.T120fs	.	.	146.0	10.0	65.0	0.0	.	62	.	.	Atlas-INDEL
SNX24	28966	hgsc.bcm.edu	hg19	5	122272475	122272475	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNX24	NM_014035	exon2	c.106delG	p.E36fs	.	.	180.0	13.0	142.0	0.0	.	14	.	.	Atlas-INDEL
SLC25A13	10165	hgsc.bcm.edu	hg19	7	95906607	95906607	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC25A13	NM_001160210	exon3	c.114delT	p.N38fs	.	.	151.0	10.0	76.0	0.0	.	131	.	.	Atlas-INDEL
FZD6	8323	hgsc.bcm.edu	hg19	8	104330820	104330820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FZD6	NM_003506	exon3	c.179delA	p.H60fs	.	.	125.0	11.0	87.0	0.0	.	61	.	.	Atlas-INDEL
KIF15	56992	hgsc.bcm.edu	hg19	3	44879844	44879844	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	KIF15,NS,carcinoma,0,1	KIF15	NM_020242	exon27	c.3248delC	p.S1083fs	.	.	159.0	10.0	153.0	0.0	.	103	.	.	Atlas-INDEL
GPR63	81491	hgsc.bcm.edu	hg19	6	97246738	97246738	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR63	NM_030784	exon2	c.871delC	p.L291fs	.	.	124.0	10.0	102.0	0.0	.	60	.	.	Atlas-INDEL
SCG5	6447	hgsc.bcm.edu	hg19	15	32936003	32936003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCG5	NM_003020	exon2	c.209delG	p.G70fs	.	.	152.0	11.0	141.0	0.0	.	13	.	.	Atlas-INDEL
TENM1	10178	hgsc.bcm.edu	hg19	X	123697625	123697625	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001163278	exon14	c.2264-2T>-	.	.	.	193.0	15.0	144.0	0.0	.	.	.	.	Atlas-INDEL
CAMSAP3	57662	hgsc.bcm.edu	hg19	19	7672746	7672746	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CAMSAP3	NM_001080429	exon6	c.693delA	p.K231fs	.	.	306.0	19.0	253.0	0.0	.	131	.	.	Atlas-INDEL
FAM186A	121006	hgsc.bcm.edu	hg19	12	50747194	50747194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM186A	NM_001145475	exon4	c.3422delA	p.Q1141fs	.	.	146.0	11.0	105.0	0.0	.	181	.	.	Atlas-INDEL
PYROXD2	84795	hgsc.bcm.edu	hg19	10	100152700	100152700	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PYROXD2	NM_032709	exon9	c.927delG	p.K309fs	.	.	156.0	10.0	218.0	0.0	.	43	.	.	Atlas-INDEL
KRCC1	51315	hgsc.bcm.edu	hg19	2	88327573	88327573	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRCC1	NM_016618	exon4	c.511delT	p.S171fs	.	.	354.0	24.0	238.0	0.0	.	25	.	.	Atlas-INDEL
OPN3	23596	hgsc.bcm.edu	hg19	1	241757938	241757938	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OPN3	NM_014322	exon4	c.1002delT	p.P334fs	.	.	175.0	11.0	115.0	0.0	.	28	.	.	Atlas-INDEL
PDP1	54704	hgsc.bcm.edu	hg19	8	94934597	94934597	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDP1	NM_001161780	exon3	c.384delC	p.G128fs	.	.	200.0	13.0	144.0	0.0	.	97	.	.	Atlas-INDEL
C2orf71	388939	hgsc.bcm.edu	hg19	2	29294038	29294038	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf71	NM_001029883	exon1	c.3091delA	p.S1031fs	.	.	232.0	14.0	213.0	0.0	.	146	.	.	Atlas-INDEL
PIK3C3	5289	hgsc.bcm.edu	hg19	18	39593452	39593452	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3C3	NM_002647	exon11	c.1216delG	p.E406fs	.	.	256.0	16.0	215.0	0.0	.	138	.	.	Atlas-INDEL
GMPPA	29926	hgsc.bcm.edu	hg19	2	220369963	220369963	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GMPPA	NM_205847	exon8	c.633delA	p.P211fs	.	.	165.0	11.0	144.0	0.0	.	50	.	.	Atlas-INDEL
BCL11A	53335	hgsc.bcm.edu	hg19	2	60688969	60688969	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BCL11A	NM_022893	exon4	c.1079delT	p.L360fs	.	.	191.0	13.0	141.0	0.0	.	298	.	.	Atlas-INDEL
DNAH17	8632	hgsc.bcm.edu	hg19	17	76482378	76482378	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH17	NM_173628	exon45	c.7030delA	p.R2344fs	.	.	181.0	11.0	84.0	0.0	.	347	.	.	Atlas-INDEL
MAP7D3	79649	hgsc.bcm.edu	hg19	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP7D3	NM_024597	exon8	c.923delA	p.Q308fs	.	.	135.0	11.0	130.0	0.0	.	102	.	.	Atlas-INDEL
ITGAM	3684	hgsc.bcm.edu	hg19	16	31308914	31308914	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGAM	NM_000632	exon13	c.1435delG	p.A479fs	.	.	208.0	13.0	149.0	0.0	.	137	.	.	Atlas-INDEL
FKBP4	2288	hgsc.bcm.edu	hg19	12	2907011	2907011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FKBP4	NM_002014	exon3	c.366delT	p.I122fs	.	.	154.0	11.0	154.0	0.0	.	29	.	.	Atlas-INDEL
GIMAP2	26157	hgsc.bcm.edu	hg19	7	150390266	150390266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GIMAP2	NM_015660	exon3	c.891delG	p.L297fs	.	.	155.0	10.0	79.0	0.0	.	39	.	.	Atlas-INDEL
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128649751	128649751	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA1	NM_139035	exon5	c.544delC	p.P182fs	.	.	212.0	13.0	153.0	0.0	.	126	.	.	Atlas-INDEL
TULP2	7288	hgsc.bcm.edu	hg19	19	49400644	49400644	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TULP2	NM_003323	exon3	c.43delC	p.H15fs	.	.	153.0	10.0	124.0	0.0	.	60	.	.	Atlas-INDEL
HDDC2	51020	hgsc.bcm.edu	hg19	6	125621689	125621689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDDC2	NM_016063	exon2	c.202delG	p.D68fs	.	.	178.0	11.0	154.0	0.0	.	21	.	.	Atlas-INDEL
SDCCAG3	10807	hgsc.bcm.edu	hg19	9	139303504	139303504	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SDCCAG3	NM_001039707	exon3	c.237delG	p.K79fs	.	.	151.0	10.0	127.0	0.0	.	41	.	.	Atlas-INDEL
RAB6A	5870	hgsc.bcm.edu	hg19	11	73431914	73431914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAB6A	NM_002869	exon3	c.161delC	p.T54fs	.	.	160.0	12.0	74.0	0.0	.	17	.	.	Atlas-INDEL
REST	5978	hgsc.bcm.edu	hg19	4	57798156	57798156	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	REST,right_lower_lobe,carcinoma,0,1	REST	NM_001193508	exon4	c.3131delG	p.R1044fs	.	.	166.0	10.0	145.0	0.0	.	104	.	.	Atlas-INDEL
KIAA1919	91749	hgsc.bcm.edu	hg19	6	111587466	111587466	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1919	NM_153369	exon4	c.700delC	p.L234fs	.	.	176.0	11.0	129.0	0.0	.	54	.	.	Atlas-INDEL
PYGM	5837	hgsc.bcm.edu	hg19	11	64521090	64521090	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PYGM	NM_005609	exon11	c.1305delC	p.G435fs	.	.	150.0	10.0	116.0	0.0	.	77	.	.	Atlas-INDEL
WAPAL	23063	hgsc.bcm.edu	hg19	10	88232474	88232474	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WAPAL	NM_015045	exon6	c.1789delA	p.K597fs	.	.	130.0	12.0	141.0	0.0	.	81	.	.	Atlas-INDEL
FGD6	55785	hgsc.bcm.edu	hg19	12	95501402	95501402	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FGD6	NM_018351	exon12	c.3271delC	p.L1091fs	.	.	126.0	13.0	109.0	0.0	.	127	.	.	Atlas-INDEL
LRRC36	55282	hgsc.bcm.edu	hg19	16	67360810	67360810	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC36	NM_018296	exon1	c.44delT	p.L15fs	.	.	109.0	11.0	96.0	0.0	.	68	.	.	Atlas-INDEL
DSG3	1830	hgsc.bcm.edu	hg19	18	29054359	29054359	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSG3	NM_001944	exon15	c.2376delC	p.Y792fs	.	.	142.0	10.0	134.0	0.0	.	172	.	.	Atlas-INDEL
CHPT1	56994	hgsc.bcm.edu	hg19	12	102107976	102107976	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHPT1	NM_020244	exon2	c.381delA	p.L127fs	.	.	175.0	11.0	125.0	0.0	.	27	.	.	Atlas-INDEL
CARD9	64170	hgsc.bcm.edu	hg19	9	139266450	139266450	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CARD9	NM_052813	exon2	c.82delT	p.S28fs	.	.	174.0	11.0	146.0	0.0	.	47	.	.	Atlas-INDEL
DOCK7	85440	hgsc.bcm.edu	hg19	1	63114152	63114152	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK7	NM_001272002	exon5	c.454delG	p.G152fs	.	.	160.0	10.0	145.0	0.0	.	184	.	.	Atlas-INDEL
DDX18	8886	hgsc.bcm.edu	hg19	2	118579744	118579744	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX18	NM_006773	exon7	c.972delT	p.Y324X	.	.	229.0	14.0	177.0	0.0	.	79	.	.	Atlas-INDEL
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32929175	32929176	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGAP11A	NM_014783	exon12	c.2200_2201del	p.734_734del	.	.	63.0	11.0	47.0	0.0	.	84	.	.	Atlas-INDEL
SLC28A1	9154	hgsc.bcm.edu	hg19	15	85431063	85431063	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC28A1	NM_004213	exon3	c.71delT	p.M24fs	.	.	190.0	12.0	161.0	0.0	.	118	.	.	Atlas-INDEL
LMNB2	84823	hgsc.bcm.edu	hg19	19	2432473	2432473	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LMNB2	NM_032737	exon9	c.1532delA	p.E511fs	.	.	165.0	10.0	124.0	0.0	.	40	.	.	Atlas-INDEL
ANO2	57101	hgsc.bcm.edu	hg19	12	5721863	5721863	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANO2	NM_020373	exon20	c.2047delA	p.K683fs	.	.	161.0	11.0	114.0	0.0	.	309	.	.	Atlas-INDEL
SLC16A5	9121	hgsc.bcm.edu	hg19	17	73094135	73094135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC16A5	NM_001271765	exon4	c.201delG	p.G67fs	.	.	225.0	15.0	147.0	0.0	.	80	.	.	Atlas-INDEL
ITFG1	81533	hgsc.bcm.edu	hg19	16	47347686	47347686	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITFG1	NM_030790	exon9	c.852delT	p.N284fs	.	.	146.0	10.0	93.0	0.0	.	49	.	.	Atlas-INDEL
RGL3	57139	hgsc.bcm.edu	hg19	19	11526663	11526663	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGL3	NM_001035223	exon5	c.588delG	p.L196fs	.	.	155.0	11.0	118.0	0.0	.	100	.	.	Atlas-INDEL
ANXA13	312	hgsc.bcm.edu	hg19	8	124748069	124748069	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANXA13	NM_001003954	exon2	c.65delA	p.D22fs	.	.	142.0	11.0	147.0	0.0	.	38	.	.	Atlas-INDEL
MICALL1	85377	hgsc.bcm.edu	hg19	22	38321985	38321985	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MICALL1	NM_033386	exon8	c.1399delA	p.T467fs	.	.	237.0	16.0	212.0	0.0	.	53	.	.	Atlas-INDEL
OSBPL8	114882	hgsc.bcm.edu	hg19	12	76780366	76780366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL8	NM_020841	exon13	c.1428delG	p.K476fs	.	.	229.0	16.0	143.0	0.0	.	86	.	.	Atlas-INDEL
NCSTN	23385	hgsc.bcm.edu	hg19	1	160318871	160318871	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NCSTN	NM_015331	exon3	c.272delA	p.N91fs	.	.	268.0	17.0	145.0	0.0	.	64	.	.	Atlas-INDEL
ARMC9	80210	hgsc.bcm.edu	hg19	2	232123766	232123766	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARMC9	NM_025139	exon11	c.976delA	p.I326fs	.	.	185.0	13.0	157.0	0.0	.	129	.	.	Atlas-INDEL
HEATR3	55027	hgsc.bcm.edu	hg19	16	50106592	50106592	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEATR3	NM_182922	exon5	c.588delG	p.R196fs	.	.	153.0	11.0	157.0	0.0	.	59	.	.	Atlas-INDEL
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21181509	21181509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G3	NM_001198801	exon24	c.3336delA	p.G1112fs	.	.	103.0	10.0	90.0	0.0	.	300	.	.	Atlas-INDEL
IAH1	285148	hgsc.bcm.edu	hg19	2	9628363	9628363	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IAH1	NM_001039613	exon6	c.651delG	p.E217fs	.	.	159.0	10.0	152.0	0.0	.	12	.	.	Atlas-INDEL
BMPR2	659	hgsc.bcm.edu	hg19	2	203407121	203407121	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BMPR2	NM_001204	exon10	c.1363delA	p.R455fs	.	.	162.0	10.0	138.0	0.0	.	142	.	.	Atlas-INDEL
SYT14	255928	hgsc.bcm.edu	hg19	1	210329212	210329212	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYT14	NM_001146264	exon8	c.1445delT	p.I482fs	.	.	253.0	16.0	132.0	0.0	.	89	.	.	Atlas-INDEL
MCM3	4172	hgsc.bcm.edu	hg19	6	52147525	52147525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MCM3	NM_002388	exon3	c.462delG	p.K154fs	.	.	162.0	10.0	132.0	0.0	.	63	.	.	Atlas-INDEL
PTPRT	11122	hgsc.bcm.edu	hg19	20	41306553	41306553	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRT	NM_007050	exon7	c.1107delT	p.G369fs	.	.	177.0	12.0	125.0	0.0	.	372	.	.	Atlas-INDEL
UST	10090	hgsc.bcm.edu	hg19	6	149340329	149340329	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UST	NM_005715	exon6	c.735delA	p.L245fs	.	.	174.0	11.0	125.0	0.0	.	42	.	.	Atlas-INDEL
NRXN2	9379	hgsc.bcm.edu	hg19	11	64375286	64375286	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,3	NRXN2	NM_015080	exon23	c.4522delA	p.T1508fs	.	.	145.0	12.0	102.0	0.0	.	247	.	.	Atlas-INDEL
KRTAP25-1	100131902	hgsc.bcm.edu	hg19	21	31661691	31661691	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRTAP25-1	NM_001128598	exon1	c.119delC	p.S40fs	.	.	154.0	12.0	183.0	0.0	.	13	.	.	Atlas-INDEL
NEXN	91624	hgsc.bcm.edu	hg19	1	78408251	78408251	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEXN	NM_144573	exon13	c.1764delT	p.L588fs	.	.	138.0	10.0	120.0	0.0	.	77	.	.	Atlas-INDEL
CRISP2	7180	hgsc.bcm.edu	hg19	6	49660494	49660494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CRISP2	NM_001142408	exon10	c.725delT	p.I242fs	.	.	136.0	10.0	97.0	0.0	.	53	.	.	Atlas-INDEL
FBXO4	26272	hgsc.bcm.edu	hg19	5	41927229	41927229	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXO4	NM_033484	exon2	c.303delC	p.Y101fs	.	.	192.0	12.0	134.0	0.0	.	42	.	.	Atlas-INDEL
ATAD3A	55210	hgsc.bcm.edu	hg19	1	1463179	1463179	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATAD3A	NM_018188	exon14	c.1585delC	p.R529fs	.	.	166.0	10.0	219.0	0.0	.	35	.	.	Atlas-INDEL
TRPM8	79054	hgsc.bcm.edu	hg19	2	234879010	234879010	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,2	TRPM8	NM_024080	exon17	c.2294delA	p.H765fs	.	.	242.0	15.0	189.0	0.0	.	146	.	.	Atlas-INDEL
DNAH12	201625	hgsc.bcm.edu	hg19	3	57357612	57357612	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH12	NM_178504	exon48	c.7411delC	p.L2471X	.	.	161.0	10.0	119.0	0.0	.	182	.	.	Atlas-INDEL
DNAH7	56171	hgsc.bcm.edu	hg19	2	196673531	196673531	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon53	c.9959delG	p.C3320fs	.	.	138.0	12.0	120.0	0.0	.	512	.	.	Atlas-INDEL
TMEM59	9528	hgsc.bcm.edu	hg19	1	54506473	54506473	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM59	NM_004872	exon6	c.664delC	p.L222fs	.	.	190.0	13.0	186.0	0.0	.	28	.	.	Atlas-INDEL
UNK	85451	hgsc.bcm.edu	hg19	17	73808634	73808634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNK	NM_001080419	exon4	c.589delG	p.E197fs	.	.	155.0	11.0	84.0	0.0	.	87	.	.	Atlas-INDEL
DSG3	1830	hgsc.bcm.edu	hg19	18	29055783	29055783	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DSG3	NM_001944	exon16	c.2559delT	p.F853fs	.	.	192.0	12.0	165.0	0.0	.	172	.	.	Atlas-INDEL
C2orf43	60526	hgsc.bcm.edu	hg19	2	20901391	20901391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C2orf43	NM_021925	exon6	c.726delC	p.G242fs	.	.	176.0	11.0	158.0	0.0	.	28	.	.	Atlas-INDEL
FSTL4	23105	hgsc.bcm.edu	hg19	5	132553042	132553042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FSTL4	NM_015082	exon13	c.1488delT	p.N496fs	.	.	167.0	11.0	150.0	0.0	.	74	.	.	Atlas-INDEL
TOP3B	8940	hgsc.bcm.edu	hg19	22	22318323	22318323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TOP3B	NM_003935	exon11	c.1177delA	p.M393X	.	.	139.0	10.0	103.0	0.0	.	107	.	.	Atlas-INDEL
GRAMD1C	54762	hgsc.bcm.edu	hg19	3	113595052	113595052	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRAMD1C	NM_017577	exon5	c.403delG	p.E135fs	.	.	196.0	12.0	164.0	0.0	.	71	.	.	Atlas-INDEL
PIK3R1	5295	hgsc.bcm.edu	hg19	5	67575562	67575565	+	Frame_Shift_Del	DEL	GTTT	GTTT	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	GTTT	GTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3R1	NM_181523	exon5	c.634_634del	p.212_212del	.	.	159.0	34.0	127.0	0.0	.	869	.	.	Atlas-Indel,Pindel
NEK8	284086	hgsc.bcm.edu	hg19	17	27064915	27064915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK8	NM_178170	exon7	c.967delA	p.T323fs	.	.	116.0	10.0	80.0	0.0	.	76	.	.	Atlas-INDEL
EPHA10	284656	hgsc.bcm.edu	hg19	1	38185112	38185112	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA10	NM_001099439	exon15	c.2731delA	p.K911fs	.	.	216.0	13.0	186.0	0.0	.	120	.	.	Atlas-INDEL
RARS2	57038	hgsc.bcm.edu	hg19	6	88279277	88279277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RARS2	NM_020320	exon2	c.69delC	p.N23fs	.	.	161.0	10.0	139.0	0.0	.	61	.	.	Atlas-INDEL
ALG10B	144245	hgsc.bcm.edu	hg19	12	38714025	38714025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALG10B	NM_001013620	exon3	c.431delA	p.Y144fs	.	.	405.0	25.0	317.0	0.0	.	58	.	.	Atlas-INDEL
ADCK4	79934	hgsc.bcm.edu	hg19	19	41220518	41220518	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADCK4	NM_001142555	exon2	c.21delC	p.G7fs	.	.	169.0	12.0	155.0	0.0	.	92	.	.	Atlas-INDEL
RNF145	153830	hgsc.bcm.edu	hg19	5	158585835	158585835	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF145	NM_001199380	exon11	c.1926delA	p.P642fs	.	.	210.0	15.0	168.0	0.0	.	110	.	.	Atlas-INDEL
UBQLN3	50613	hgsc.bcm.edu	hg19	11	5529234	5529234	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBQLN3	NM_017481	exon2	c.1556delG	p.R519fs	.	.	180.0	11.0	128.0	0.0	.	107	.	.	Atlas-INDEL
CHD1	1105	hgsc.bcm.edu	hg19	5	98207855	98207855	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHD1	NM_001270	exon27	c.3762delC	p.G1254fs	.	.	181.0	11.0	128.0	0.0	.	137	.	.	Atlas-INDEL
PIGA	5277	hgsc.bcm.edu	hg19	X	15339659	15339659	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIGA	NM_002641	exon6	c.1425delT	p.G475fs	.	.	176.0	12.0	138.0	0.0	.	34	.	.	Atlas-INDEL
HNRPDL	9987	hgsc.bcm.edu	hg19	4	83348625	83348625	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNRPDL	NM_031372	exon4	c.868delT	p.L290fs	.	.	183.0	12.0	121.0	0.0	.	35	.	.	Atlas-INDEL
PLCG2	5336	hgsc.bcm.edu	hg19	16	81939079	81939079	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCG2	NM_002661	exon15	c.1433delA	p.Q478fs	.	.	235.0	16.0	172.0	0.0	.	276	.	.	Atlas-INDEL
PREX1	57580	hgsc.bcm.edu	hg19	20	47256419	47256419	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PREX1	NM_020820	exon30	c.3790delG	p.E1264fs	.	.	183.0	11.0	131.0	0.0	.	441	.	.	Atlas-INDEL
MYO6	4646	hgsc.bcm.edu	hg19	6	76558143	76558143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO6	NM_004999	exon11	c.972delG	p.M324fs	.	.	178.0	11.0	141.0	0.0	.	124	.	.	Atlas-INDEL
ITIH5	80760	hgsc.bcm.edu	hg19	10	7605064	7605064	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITIH5	NM_030569	exon15	c.2811delA	p.G937fs	.	.	172.0	11.0	172.0	0.0	.	343	.	.	Atlas-INDEL
PHOX2A	401	hgsc.bcm.edu	hg19	11	71950817	71950817	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHOX2A	NM_005169	exon3	c.832delG	p.A278fs	.	.	181.0	14.0	108.0	0.0	.	14	.	.	Atlas-INDEL
PUM1	9698	hgsc.bcm.edu	hg19	1	31532353	31532353	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PUM1	NM_014676	exon2	c.62delA	p.H21fs	.	.	129.0	11.0	97.0	0.0	.	107	.	.	Atlas-INDEL
ZNF562	54811	hgsc.bcm.edu	hg19	19	9767254	9767254	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF562	NM_001130032	exon5	c.318delG	p.L106fs	.	.	228.0	14.0	168.0	0.0	.	72	.	.	Atlas-INDEL
CDKL2	8999	hgsc.bcm.edu	hg19	4	76523281	76523281	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CDKL2,NS,carcinoma,0,1	CDKL2	NM_003948	exon8	c.1001delG	p.R334fs	.	.	173.0	11.0	118.0	0.0	.	58	.	.	Atlas-INDEL
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74930365	74930365	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001199327	exon24	c.2470delG	p.E824fs	.	.	120.0	10.0	105.0	0.0	.	.	.	.	Atlas-INDEL
EML5	161436	hgsc.bcm.edu	hg19	14	89087164	89087164	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML5	NM_183387	exon38	c.5310delA	p.L1770fs	.	.	201.0	14.0	171.0	0.0	.	141	.	.	Atlas-INDEL
HDLBP	3069	hgsc.bcm.edu	hg19	2	242194991	242194991	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDLBP	NM_005336	exon8	c.879delG	p.K293fs	.	.	207.0	13.0	115.0	0.0	.	118	.	.	Atlas-INDEL
CELF5	60680	hgsc.bcm.edu	hg19	19	3290263	3290263	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CELF5	NM_021938	exon11	c.1220delT	p.L407fs	.	.	315.0	19.0	268.0	0.0	.	32	.	.	Atlas-INDEL
PTK7	5754	hgsc.bcm.edu	hg19	6	43100230	43100230	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTK7	NM_001270398	exon7	c.1056delT	p.L352fs	.	.	166.0	15.0	155.0	0.0	.	101	.	.	Atlas-INDEL
USH2A	7399	hgsc.bcm.edu	hg19	1	216062051	216062051	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USH2A	NM_206933	exon41	c.7941delT	p.P2647fs	.	.	171.0	11.0	99.0	0.0	.	1168	.	.	Atlas-INDEL
AHDC1	27245	hgsc.bcm.edu	hg19	1	27876439	27876439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHDC1	NM_001029882	exon6	c.2189delA	p.E730fs	.	.	249.0	18.0	238.0	0.0	.	98	.	.	Atlas-INDEL
TRAPPC11	60684	hgsc.bcm.edu	hg19	4	184596365	184596365	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_021942	exon7	c.708delG	p.L236fs	.	.	131.0	11.0	155.0	0.0	.	.	.	.	Atlas-INDEL
KIF13A	63971	hgsc.bcm.edu	hg19	6	17852235	17852235	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF13A	NM_001105567	exon7	c.534delG	p.L178fs	.	.	184.0	16.0	128.0	0.0	.	276	.	.	Atlas-INDEL
SPATS2	65244	hgsc.bcm.edu	hg19	12	49878388	49878388	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATS2	NM_023071	exon4	c.40delA	p.I14fs	.	.	165.0	14.0	151.0	0.0	.	43	.	.	Atlas-INDEL
EML3	256364	hgsc.bcm.edu	hg19	11	62379012	62379012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EML3	NM_153265	exon2	c.80delA	p.E27fs	.	.	256.0	17.0	119.0	0.0	.	61	.	.	Atlas-INDEL
GARNL3	84253	hgsc.bcm.edu	hg19	9	130107748	130107748	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GARNL3	NM_032293	exon16	c.1422delT	p.C474X	.	.	162.0	13.0	140.0	0.0	.	83	.	.	Atlas-INDEL
TMEM2	23670	hgsc.bcm.edu	hg19	9	74327107	74327107	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM2	NM_013390	exon16	c.2662delT	p.Y888fs	.	.	197.0	12.0	185.0	0.0	.	112	.	.	Atlas-INDEL
PARP14	54625	hgsc.bcm.edu	hg19	3	122399784	122399784	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PARP14	NM_017554	exon1	c.53delA	p.D18fs	.	.	141.0	10.0	137.0	0.0	.	242	.	.	Atlas-INDEL
CCDC138	165055	hgsc.bcm.edu	hg19	2	109492664	109492664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC138	NM_144978	exon15	c.1952delT	p.L651fs	.	.	199.0	12.0	157.0	0.0	.	49	.	.	Atlas-INDEL
LCN15	389812	hgsc.bcm.edu	hg19	9	139656669	139656669	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LCN15	NM_203347	exon5	c.492delG	p.K164fs	.	.	226.0	14.0	167.0	0.0	.	11	.	.	Atlas-INDEL
TBC1D17	79735	hgsc.bcm.edu	hg19	19	50386052	50386052	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D17	NM_024682	exon8	c.829delC	p.R277fs	.	.	181.0	11.0	143.0	0.0	.	39	.	.	Atlas-INDEL
MDK	4192	hgsc.bcm.edu	hg19	11	46404272	46404272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MDK	NM_001012333	exon4	c.379delA	p.T127fs	.	.	289.0	19.0	252.0	0.0	.	4	.	.	Atlas-INDEL
KDM1A	23028	hgsc.bcm.edu	hg19	1	23376988	23376988	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM1A	NM_001009999	exon4	c.685delG	p.V229fs	.	.	146.0	13.0	117.0	0.0	.	49	.	.	Atlas-INDEL
CAP2	10486	hgsc.bcm.edu	hg19	6	17543332	17543332	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CAP2	NM_006366	exon11	c.1166delT	p.V389fs	.	.	173.0	12.0	138.0	0.0	.	61	.	.	Atlas-INDEL
EHBP1	23301	hgsc.bcm.edu	hg19	2	63176136	63176136	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EHBP1	NM_015252	exon14	c.2259delC	p.I753fs	.	.	177.0	12.0	163.0	0.0	.	127	.	.	Atlas-INDEL
ATP13A2	23400	hgsc.bcm.edu	hg19	1	17312998	17312998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP13A2	NM_022089	exon28	c.3366delT	p.G1122fs	.	.	170.0	11.0	165.0	0.0	.	85	.	.	Atlas-INDEL
ABHD3	171586	hgsc.bcm.edu	hg19	18	19263929	19263929	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABHD3	NM_138340	exon5	c.510-2T>-	.	.	.	213.0	13.0	181.0	0.0	.	32	.	.	Atlas-INDEL
TNS3	64759	hgsc.bcm.edu	hg19	7	47333390	47333390	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNS3	NM_022748	exon25	c.3714delG	p.L1238fs	.	.	108.0	10.0	92.0	0.0	.	140	.	.	Atlas-INDEL
TTC1	7265	hgsc.bcm.edu	hg19	5	159476629	159476629	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC1	NM_003314	exon6	c.649delG	p.E217fs	.	.	139.0	12.0	96.0	0.0	.	26	.	.	Atlas-INDEL
DNAH7	56171	hgsc.bcm.edu	hg19	2	196799425	196799426	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAH7	NM_018897	exon21	c.3361_3362del	p.1121_1121del	.	.	221.0	48.0	208.0	0.0	.	512	.	.	Atlas-Indel,Pindel
SYNE2	23224	hgsc.bcm.edu	hg19	14	64518666	64518666	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYNE2	NM_182914	exon48	c.8034delA	p.G2678fs	.	.	186.0	12.0	153.0	0.0	.	577	.	.	Atlas-INDEL
APC	324	hgsc.bcm.edu	hg19	5	112176345	112176345	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APC	NM_001127510	exon17	c.5053delG	p.E1685fs	.	.	114.0	11.0	104.0	0.0	.	4158	.	.	Atlas-INDEL
VIPR1	7433	hgsc.bcm.edu	hg19	3	42576497	42576497	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VIPR1	NM_004624	exon11	c.1040delT	p.I347fs	.	.	198.0	14.0	179.0	0.0	.	45	.	.	Atlas-INDEL
FBXL18	80028	hgsc.bcm.edu	hg19	7	5540757	5540757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXL18	NM_024963	exon3	c.1144delT	p.C382fs	.	.	153.0	10.0	170.0	0.0	.	99	.	.	Atlas-INDEL
ZNF148	7707	hgsc.bcm.edu	hg19	3	124952718	124952718	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF148	NM_021964	exon9	c.853delC	p.L285X	.	.	130.0	10.0	100.0	0.0	.	84	.	.	Atlas-INDEL
CKM	1158	hgsc.bcm.edu	hg19	19	45811713	45811713	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	CKM	NM_001824	exon6	c.732delC	p.G244fs	.	.	162.0	12.0	104.0	0.0	.	40	.	.	Atlas-INDEL
EFHC1	114327	hgsc.bcm.edu	hg19	6	52343943	52343943	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EFHC1	NM_018100	exon8	c.1386delT	p.I462fs	.	.	151.0	12.0	131.0	0.0	.	68	.	.	Atlas-INDEL
TMEM87A	25963	hgsc.bcm.edu	hg19	15	42512286	42512286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM87A	NM_015497	exon16	c.1452delG	p.K484fs	.	.	198.0	12.0	141.0	0.0	.	56	.	.	Atlas-INDEL
CTU2	348180	hgsc.bcm.edu	hg19	16	88780815	88780815	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CTU2	NM_001012759	exon11	c.1121delG	p.G374fs	.	.	192.0	12.0	162.0	0.0	.	66	.	.	Atlas-INDEL
PPOX	5498	hgsc.bcm.edu	hg19	1	161140731	161140731	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPOX	NM_001122764	exon12	c.1282delC	p.Q428fs	.	.	129.0	10.0	92.0	0.0	.	34	.	.	Atlas-INDEL
MUTYH	4595	hgsc.bcm.edu	hg19	1	45797094	45797094	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUTYH	NM_001128425	exon13	c.1322delA	p.E441fs	.	.	159.0	12.0	140.0	0.0	.	38	.	.	Atlas-INDEL
SMPD4	55627	hgsc.bcm.edu	hg19	2	130910956	130910956	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMPD4	NM_017951	exon18	c.2079delG	p.K693fs	.	.	194.0	12.0	156.0	0.0	.	67	.	.	Atlas-INDEL
SCN7A	6332	hgsc.bcm.edu	hg19	2	167313428	167313428	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN7A	NM_002976	exon10	c.1243delT	p.F415fs	.	.	194.0	12.0	169.0	0.0	.	410	.	.	Atlas-INDEL
RNF44	22838	hgsc.bcm.edu	hg19	5	175956599	175956599	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF44	NM_014901	exon9	c.1062delT	p.G354fs	.	.	181.0	11.0	164.0	0.0	.	33	.	.	Atlas-INDEL
ACSBG2	81616	hgsc.bcm.edu	hg19	19	6183239	6183239	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACSBG2	NM_030924	exon10	c.1277delC	p.S426fs	.	.	170.0	11.0	138.0	0.0	.	83	.	.	Atlas-INDEL
SPATA7	55812	hgsc.bcm.edu	hg19	14	88883150	88883150	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA7	NM_018418	exon5	c.333delT	p.Y111X	.	.	163.0	10.0	174.0	0.0	.	58	.	.	Atlas-INDEL
INPP5J	27124	hgsc.bcm.edu	hg19	22	31524051	31524051	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INPP5J	NM_001002837	exon7	c.795+2G>-	.	.	.	154.0	11.0	122.0	0.0	.	94	.	.	Atlas-INDEL
ASUN	55726	hgsc.bcm.edu	hg19	12	27067353	27067353	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_018164	exon12	c.1408delA	p.N470fs	.	.	173.0	12.0	131.0	0.0	.	.	.	.	Atlas-INDEL
GATAD2A	54815	hgsc.bcm.edu	hg19	19	19609429	19609429	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GATAD2A	NM_017660	exon8	c.1101delG	p.K367fs	.	.	279.0	17.0	210.0	0.0	.	81	.	.	Atlas-INDEL
ATP5A1	498	hgsc.bcm.edu	hg19	18	43666170	43666170	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP5A1	NM_004046	exon10	c.1339delG	p.A447fs	.	.	209.0	13.0	141.0	0.0	.	52	.	.	Atlas-INDEL
LGALS4	3960	hgsc.bcm.edu	hg19	19	39294528	39294528	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LGALS4	NM_006149	exon5	c.483delG	p.P161fs	.	.	129.0	10.0	93.0	0.0	.	39	.	.	Atlas-INDEL
NUB1	51667	hgsc.bcm.edu	hg19	7	151052912	151052912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUB1	NM_016118	exon6	c.545delT	p.L182fs	.	.	176.0	11.0	113.0	0.0	.	31	.	.	Atlas-INDEL
AIRE	326	hgsc.bcm.edu	hg19	21	45707420	45707420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AIRE	NM_000383	exon4	c.483delG	p.K161fs	.	.	263.0	17.0	347.0	0.0	.	61	.	.	Atlas-INDEL
ZNF516	9658	hgsc.bcm.edu	hg19	18	74153203	74153203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF516	NM_014643	exon3	c.1809delA	p.P603fs	.	.	134.0	10.0	106.0	0.0	.	102	.	.	Atlas-INDEL
ATP9A	10079	hgsc.bcm.edu	hg19	20	50307291	50307291	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP9A	NM_006045	exon8	c.711delA	p.G237fs	.	.	156.0	11.0	120.0	0.0	.	135	.	.	Atlas-INDEL
PSMD12	5718	hgsc.bcm.edu	hg19	17	65340878	65340878	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSMD12	NM_002816	exon9	c.928delA	p.T310fs	.	.	258.0	16.0	215.0	0.0	.	32	.	.	Atlas-INDEL
UFSP1	402682	hgsc.bcm.edu	hg19	7	100486590	100486590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UFSP1	NM_001015072	exon1	c.304delA	p.S102fs	.	.	171.0	11.0	131.0	0.0	.	8	.	.	Atlas-INDEL
WFDC3	140686	hgsc.bcm.edu	hg19	20	44416474	44416474	+	Splice_Site	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WFDC3	NM_080614	exon5	c.358+2G>-	.	.	.	217.0	14.0	197.0	0.0	.	18	.	.	Atlas-INDEL
NCOA6	23054	hgsc.bcm.edu	hg19	20	33329681	33329681	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NCOA6	NM_014071	exon11	c.4380delG	p.K1460fs	.	.	197.0	12.0	166.0	0.0	.	219	.	.	Atlas-INDEL
AHSA1	10598	hgsc.bcm.edu	hg19	14	77929054	77929054	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHSA1	NM_012111	exon4	c.423delG	p.V141fs	.	.	157.0	10.0	120.0	0.0	.	24	.	.	Atlas-INDEL
PATZ1	23598	hgsc.bcm.edu	hg19	22	31723029	31723029	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PATZ1	NM_014323	exon5	c.1913delA	p.D638fs	.	.	183.0	13.0	126.0	0.0	.	24	.	.	Atlas-INDEL
PLOD2	5352	hgsc.bcm.edu	hg19	3	145806385	145806385	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLOD2	NM_182943	exon9	c.994delA	p.I332fs	.	.	162.0	12.0	110.0	0.0	.	81	.	.	Atlas-INDEL
AMN	81693	hgsc.bcm.edu	hg19	14	103390126	103390126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AMN	NM_030943	exon2	c.121delA	p.T41fs	.	.	150.0	11.0	104.0	0.0	.	13	.	.	Atlas-INDEL
B3GALT4	8705	hgsc.bcm.edu	hg19	6	33245843	33245843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	B3GALT4	NM_003782	exon1	c.646delG	p.V216fs	.	.	154.0	10.0	135.0	0.0	.	30	.	.	Atlas-INDEL
LAMA5	3911	hgsc.bcm.edu	hg19	20	60928262	60928262	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA5	NM_005560	exon3	c.497delG	p.R166fs	.	.	178.0	11.0	137.0	0.0	.	268	.	.	Atlas-INDEL
PAFAH1B1	5048	hgsc.bcm.edu	hg19	17	2569341	2569341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PAFAH1B1	NM_000430	exon4	c.148delC	p.L50fs	.	.	112.0	12.0	123.0	0.0	.	26	.	.	Atlas-INDEL
IGSF1	3547	hgsc.bcm.edu	hg19	X	130417076	130417076	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF1	NM_001555	exon6	c.831delT	p.N277fs	.	.	249.0	16.0	226.0	0.0	.	231	.	.	Atlas-INDEL
CASKIN1	57524	hgsc.bcm.edu	hg19	16	2239271	2239271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CASKIN1	NM_020764	exon5	c.455delT	p.L152fs	.	.	165.0	11.0	98.0	0.0	.	130	.	.	Atlas-INDEL
DHX33	56919	hgsc.bcm.edu	hg19	17	5353579	5353579	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHX33	NM_020162	exon10	c.1673delA	p.D558fs	.	.	147.0	11.0	173.0	0.0	.	41	.	.	Atlas-INDEL
TLE3	7090	hgsc.bcm.edu	hg19	15	70358457	70358457	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TLE3	NM_001105192	exon7	c.474delA	p.P158fs	.	.	226.0	14.0	161.0	0.0	.	104	.	.	Atlas-INDEL
IGSF22	283284	hgsc.bcm.edu	hg19	11	18741308	18741308	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IGSF22	NM_173588	exon7	c.652delC	p.L218fs	.	.	191.0	13.0	141.0	0.0	.	211	.	.	Atlas-INDEL
ILDR1	286676	hgsc.bcm.edu	hg19	3	121712685	121712685	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ILDR1_ENST00000344209,NS,carcinoma,0,2	ILDR1	NM_001199799	exon7	c.912delT	p.P304fs	.	.	155.0	11.0	128.0	0.0	.	120	.	.	Atlas-INDEL
DMTF1	9988	hgsc.bcm.edu	hg19	7	86813845	86813845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMTF1	NM_001142327	exon11	c.952delG	p.E318fs	.	.	193.0	12.0	74.0	0.0	.	48	.	.	Atlas-INDEL
MYH15	22989	hgsc.bcm.edu	hg19	3	108205276	108205276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYH15	NM_014981	exon11	c.1030delA	p.T344fs	.	.	159.0	10.0	162.0	0.0	.	223	.	.	Atlas-INDEL
PM20D2	135293	hgsc.bcm.edu	hg19	6	89864571	89864571	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PM20D2	NM_001010853	exon4	c.861delC	p.T287fs	.	.	213.0	13.0	178.0	0.0	.	30	.	.	Atlas-INDEL
T	6862	hgsc.bcm.edu	hg19	6	166579270	166579270	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	T	NM_001270484	exon4	c.531delT	p.G177fs	.	.	154.0	10.0	192.0	0.0	.	77	.	.	Atlas-INDEL
UACA	55075	hgsc.bcm.edu	hg19	15	70959454	70959454	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UACA	NM_018003	exon16	c.3570delG	p.K1190fs	.	.	156.0	10.0	136.0	0.0	.	235	.	.	Atlas-INDEL
WDR46	9277	hgsc.bcm.edu	hg19	6	33247088	33247088	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR46	NM_005452	exon15	c.1799delC	p.A600fs	.	.	159.0	10.0	139.0	0.0	.	43	.	.	Atlas-INDEL
SEC16B	89866	hgsc.bcm.edu	hg19	1	177901668	177901668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC16B	NM_033127	exon24	c.2970delA	p.G990fs	.	.	213.0	13.0	117.0	0.0	.	92	.	.	Atlas-INDEL
NLRC4	58484	hgsc.bcm.edu	hg19	2	32449804	32449804	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	NLRC4_ENST00000404025,NS,carcinoma,0,1	NLRC4	NM_001199139	exon9	c.2814delC	p.N938fs	.	.	102.0	11.0	77.0	0.0	.	165	.	.	Atlas-INDEL
KCNQ5	56479	hgsc.bcm.edu	hg19	6	73787512	73787512	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNQ5	NM_001160132	exon5	c.819delA	p.G273fs	.	.	140.0	11.0	107.0	0.0	.	153	.	.	Atlas-INDEL
DDX46	9879	hgsc.bcm.edu	hg19	5	134109494	134109494	+	Frame_Shift_Del	DEL	A	A	-	rs35026423		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX46	NM_014829	exon5	c.555delG	p.L185fs	.	.	172.0	12.0	118.0	0.0	.	77	.	.	Atlas-INDEL
C1orf74	148304	hgsc.bcm.edu	hg19	1	209956336	209956336	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C1orf74	NM_152485	exon2	c.645delA	p.P215fs	.	.	175.0	11.0	101.0	0.0	.	30	.	.	Atlas-INDEL
PBRM1	55193	hgsc.bcm.edu	hg19	3	52712558	52712558	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PBRM1	NM_018313	exon3	c.195delC	p.G65fs	.	.	149.0	10.0	130.0	0.0	.	1252	.	.	Atlas-INDEL
COL8A1	1295	hgsc.bcm.edu	hg19	3	99513597	99513597	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL8A1	NM_001850	exon5	c.851delG	p.G284fs	.	.	89.0	10.0	56.0	0.0	.	68	.	.	Atlas-INDEL
HERC6	55008	hgsc.bcm.edu	hg19	4	89326115	89326115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HERC6	NM_017912	exon9	c.1179delG	p.V393fs	.	.	166.0	10.0	129.0	0.0	.	104	.	.	Atlas-INDEL
FAM186A	121006	hgsc.bcm.edu	hg19	12	50746097	50746097	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM186A	NM_001145475	exon4	c.4519delC	p.L1507fs	.	.	171.0	11.0	125.0	0.0	.	181	.	.	Atlas-INDEL
ASH1L	55870	hgsc.bcm.edu	hg19	1	155408163	155408163	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASH1L	NM_018489	exon5	c.5784delG	p.K1928fs	.	.	164.0	12.0	84.0	0.0	.	279	.	.	Atlas-INDEL
HES1	3280	hgsc.bcm.edu	hg19	3	193854479	193854479	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HES1	NM_005524	exon2	c.181delA	p.I61fs	.	.	220.0	14.0	155.0	0.0	.	23	.	.	Atlas-INDEL
LRRFIP1	9208	hgsc.bcm.edu	hg19	2	238647924	238647924	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRFIP1	NM_001137550	exon11	c.604delA	p.R202fs	.	.	166.0	11.0	121.0	0.0	.	171	.	.	Atlas-INDEL
LPIN3	64900	hgsc.bcm.edu	hg19	20	39977799	39977799	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LPIN3	NM_022896	exon5	c.624delG	p.W208fs	.	.	158.0	10.0	130.0	0.0	.	69	.	.	Atlas-INDEL
PSRC1	84722	hgsc.bcm.edu	hg19	1	109824582	109824582	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PSRC1	NM_001032291	exon4	c.179delA	p.Q60fs	.	.	168.0	11.0	105.0	0.0	.	12	.	.	Atlas-INDEL
UBA3	9039	hgsc.bcm.edu	hg19	3	69117114	69117114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBA3	NM_003968	exon6	c.394delC	p.L132X	.	.	208.0	13.0	167.0	0.0	.	43	.	.	Atlas-INDEL
HERC5	51191	hgsc.bcm.edu	hg19	4	89407334	89407334	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HERC5	NM_016323	exon14	c.1805delA	p.N602fs	.	.	163.0	15.0	130.0	0.0	.	114	.	.	Atlas-INDEL
ATP12A	479	hgsc.bcm.edu	hg19	13	25280558	25280558	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP12A	NM_001185085	exon15	c.2143delT	p.S715fs	.	.	190.0	12.0	222.0	0.0	.	172	.	.	Atlas-INDEL
SCN10A	6336	hgsc.bcm.edu	hg19	3	38739704	38739704	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN10A	NM_006514	exon27	c.5008delA	p.I1670fs	.	.	186.0	13.0	162.0	0.0	.	359	.	.	Atlas-INDEL
CCDC93	54520	hgsc.bcm.edu	hg19	2	118735578	118735578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC93	NM_019044	exon8	c.650delT	p.M217fs	.	.	147.0	10.0	145.0	0.0	.	70	.	.	Atlas-INDEL
ENTPD6	955	hgsc.bcm.edu	hg19	20	25187773	25187773	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENTPD6	NM_001247	exon3	c.115delC	p.R39fs	.	.	129.0	10.0	100.0	0.0	.	57	.	.	Atlas-INDEL
C6orf1	221491	hgsc.bcm.edu	hg19	6	34214570	34214570	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf1	NM_001008704	exon5	c.202delT	p.L68fs	.	.	153.0	10.0	116.0	0.0	.	6	.	.	Atlas-INDEL
MIR556	693141	hgsc.bcm.edu	hg19	1	162312409	162312409	+	RNA	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	176.0	13.0	103.0	0.0	.	.	.	.	Atlas-INDEL
SRRT	51593	hgsc.bcm.edu	hg19	7	100485681	100485681	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SRRT	NM_015908	exon18	c.2344delA	p.T782fs	.	.	165.0	10.0	137.0	0.0	.	108	.	.	Atlas-INDEL
SPINK6	404203	hgsc.bcm.edu	hg19	5	147593496	147593496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPINK6	NM_205841	exon3	c.104delA	p.D35fs	.	.	159.0	10.0	149.0	0.0	.	8	.	.	Atlas-INDEL
FAM221B	392307	hgsc.bcm.edu	hg19	9	35825746	35825746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM221B	NM_001012446	exon2	c.414delA	p.P138fs	.	.	140.0	11.0	109.0	0.0	.	38	.	.	Atlas-INDEL
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153847453	153847453	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF26	NM_015595	exon4	c.1213delG	p.E405fs	.	.	232.0	17.0	182.0	0.0	.	158	.	.	Atlas-INDEL
ZNF324B	388569	hgsc.bcm.edu	hg19	19	58967548	58967548	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF324B	NM_207395	exon4	c.1236delC	p.L412fs	.	.	226.0	14.0	139.0	0.0	.	58	.	.	Atlas-INDEL
RIT2	6014	hgsc.bcm.edu	hg19	18	40323632	40323632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	RIT2	NM_002930	exon5	c.481delG	p.E161fs	.	.	116.0	10.0	101.0	0.0	.	56	.	.	Atlas-INDEL
TFIP11	24144	hgsc.bcm.edu	hg19	22	26902743	26902743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TFIP11	NM_001008697	exon6	c.362delC	p.T121fs	.	.	140.0	10.0	103.0	0.0	.	72	.	.	Atlas-INDEL
FER1L6	654463	hgsc.bcm.edu	hg19	8	125029888	125029888	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FER1L6	NM_001039112	exon16	c.1942delG	p.E648fs	.	.	101.0	11.0	104.0	0.0	.	268	.	.	Atlas-INDEL
DHX36	170506	hgsc.bcm.edu	hg19	3	154010423	154010423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHX36	NM_020865	exon15	c.1732delG	p.D578fs	.	.	203.0	13.0	196.0	0.0	.	98	.	.	Atlas-INDEL
INO80D	54891	hgsc.bcm.edu	hg19	2	206892990	206892990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INO80D	NM_017759	exon6	c.1144delT	p.Y382fs	.	.	132.0	10.0	116.0	0.0	.	134	.	.	Atlas-INDEL
SNORD12B	100113393	hgsc.bcm.edu	hg19	20	47896879	47896879	+	RNA	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	213.0	13.0	214.0	0.0	.	.	.	.	Atlas-INDEL
RGPD5	84220	hgsc.bcm.edu	hg19	2	111292773	111292773	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGPD5	NM_005054	exon20	c.3191delT	p.V1064fs	.	.	132.0	10.0	99.0	0.0	.	1	.	.	Atlas-INDEL
ADCY10	55811	hgsc.bcm.edu	hg19	1	167806547	167806547	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADCY10	NM_018417	exon22	c.3018delG	p.K1006fs	.	.	181.0	11.0	98.0	0.0	.	175	.	.	Atlas-INDEL
OR4K17	390436	hgsc.bcm.edu	hg19	14	20586015	20586015	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR4K17	NM_001004715	exon1	c.449delC	p.A150fs	.	.	176.0	11.0	146.0	0.0	.	58	.	.	Atlas-INDEL
VWA5A	4013	hgsc.bcm.edu	hg19	11	123994945	123994945	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VWA5A	NM_014622	exon10	c.1165delC	p.L389fs	.	.	230.0	14.0	121.0	0.0	.	102	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179614678	179614678	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_133379	exon46	c.12450delG	p.L4150fs	.	.	220.0	14.0	196.0	0.0	.	18412	.	.	Atlas-INDEL
KIF19	124602	hgsc.bcm.edu	hg19	17	72338849	72338849	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF19	NM_153209	exon4	c.311delG	p.G104fs	.	.	163.0	10.0	132.0	0.0	.	102	.	.	Atlas-INDEL
SERPINA9	327657	hgsc.bcm.edu	hg19	14	94933604	94933604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SERPINA9	NM_175739	exon3	c.799delG	p.G267fs	.	.	165.0	13.0	114.0	0.0	.	105	.	.	Atlas-INDEL
KIF2A	3796	hgsc.bcm.edu	hg19	5	61643927	61643927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF2A	NM_001243953	exon3	c.211delG	p.E71fs	.	.	170.0	11.0	123.0	0.0	.	69	.	.	Atlas-INDEL
ZC3H18	124245	hgsc.bcm.edu	hg19	16	88691079	88691079	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZC3H18	NM_144604	exon12	c.1967delT	p.V656fs	.	.	209.0	14.0	123.0	0.0	.	90	.	.	Atlas-INDEL
MYO15A	51168	hgsc.bcm.edu	hg19	17	18051452	18051452	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO15A	NM_016239	exon30	c.6618delA	p.L2206fs	.	.	202.0	13.0	148.0	0.0	.	268	.	.	Atlas-INDEL
CHEK2	11200	hgsc.bcm.edu	hg19	22	29099532	29099532	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHEK2	NM_001005735	exon9	c.999delC	p.N333fs	.	.	131.0	10.0	84.0	0.0	.	438	.	.	Atlas-INDEL
MACROD1	28992	hgsc.bcm.edu	hg19	11	63767024	63767024	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACROD1	NM_014067	exon7	c.796delT	p.C266fs	.	.	154.0	11.0	92.0	0.0	.	17	.	.	Atlas-INDEL
WHSC1	7468	hgsc.bcm.edu	hg19	4	1957786	1957786	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WHSC1	NM_133335	exon15	c.2751delA	p.E917fs	.	.	169.0	11.0	129.0	0.0	.	180	.	.	Atlas-INDEL
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48704048	48704048	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CACNA1G	NM_018896	exon38	c.7069delT	p.S2357fs	.	.	156.0	12.0	151.0	0.0	.	659	.	.	Atlas-INDEL
OAS3	4940	hgsc.bcm.edu	hg19	12	113402157	113402157	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OAS3	NM_006187	exon11	c.2346delA	p.S782fs	.	.	180.0	12.0	172.0	0.0	.	63	.	.	Atlas-INDEL
ANKFY1	51479	hgsc.bcm.edu	hg19	17	4076695	4076695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKFY1	NM_001257999	exon21	c.3095delT	p.V1032fs	.	.	151.0	11.0	150.0	0.0	.	81	.	.	Atlas-INDEL
TRRAP	8295	hgsc.bcm.edu	hg19	7	98575870	98575870	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRRAP	NM_001244580	exon56	c.8400delC	p.A2800fs	.	.	258.0	17.0	127.0	0.0	.	863	.	.	Atlas-INDEL
PLEKHA7	144100	hgsc.bcm.edu	hg19	11	16816462	16816462	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLEKHA7	NM_175058	exon18	c.2514delT	p.N838fs	.	.	140.0	10.0	121.0	0.0	.	120	.	.	Atlas-INDEL
CEBPZ	10153	hgsc.bcm.edu	hg19	2	37455194	37455194	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEBPZ	NM_005760	exon2	c.1143delG	p.K381fs	.	.	159.0	10.0	105.0	0.0	.	68	.	.	Atlas-INDEL
PCDHB12	56124	hgsc.bcm.edu	hg19	5	140588664	140588664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PCDHB12,caecum,carcinoma,0,2	PCDHB12	NM_018932	exon1	c.184delC	p.R62fs	.	.	162.0	11.0	115.0	0.0	.	179	.	.	Atlas-INDEL
AGTR1	185	hgsc.bcm.edu	hg19	3	148459417	148459417	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGTR1	NM_031850	exon4	c.699delC	p.T233fs	.	.	164.0	11.0	136.0	0.0	.	63	.	.	Atlas-INDEL
BCAR3	8412	hgsc.bcm.edu	hg19	1	94140264	94140264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BCAR3	NM_001261409	exon2	c.224delA	p.H75fs	.	.	156.0	10.0	120.0	0.0	.	62	.	.	Atlas-INDEL
STT3B	201595	hgsc.bcm.edu	hg19	3	31661295	31661295	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	STT3B	NM_178862	exon9	c.1299delC	p.I433fs	.	.	159.0	10.0	129.0	0.0	.	52	.	.	Atlas-INDEL
HFM1	164045	hgsc.bcm.edu	hg19	1	91844032	91844032	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HFM1	NM_001017975	exon10	c.1165delT	p.W389fs	.	.	187.0	12.0	129.0	0.0	.	188	.	.	Atlas-INDEL
MYBPHL	343263	hgsc.bcm.edu	hg19	1	109837772	109837772	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYBPHL	NM_001010985	exon7	c.1016delT	p.L339fs	.	.	205.0	15.0	184.0	0.0	.	28	.	.	Atlas-INDEL
AXL	558	hgsc.bcm.edu	hg19	19	41725374	41725374	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AXL	NM_021913	exon1	c.76delG	p.A26fs	.	.	222.0	14.0	279.0	0.0	.	126	.	.	Atlas-INDEL
CBFA2T2	9139	hgsc.bcm.edu	hg19	20	32207380	32207380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CBFA2T2	NM_005093	exon5	c.504delT	p.F168fs	.	.	143.0	10.0	95.0	0.0	.	93	.	.	Atlas-INDEL
USP34	9736	hgsc.bcm.edu	hg19	2	61507429	61507429	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP34	NM_014709	exon39	c.5207delG	p.W1736fs	.	.	195.0	13.0	176.0	0.0	.	334	.	.	Atlas-INDEL
SF1	7536	hgsc.bcm.edu	hg19	11	64540917	64540917	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SF1	NM_001178030	exon3	c.597delT	p.P199fs	.	.	166.0	10.0	93.0	0.0	.	124	.	.	Atlas-INDEL
ADHFE1	137872	hgsc.bcm.edu	hg19	8	67359569	67359569	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADHFE1	NM_144650	exon7	c.620delT	p.V207fs	.	.	151.0	10.0	138.0	0.0	.	83	.	.	Atlas-INDEL
RADIL	55698	hgsc.bcm.edu	hg19	7	4841575	4841575	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RADIL	NM_018059	exon12	c.2552delT	p.L851fs	.	.	128.0	10.0	87.0	0.0	.	110	.	.	Atlas-INDEL
PHF3	23469	hgsc.bcm.edu	hg19	6	64395267	64395267	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHF3	NM_015153	exon3	c.1643delG	p.R548fs	.	.	182.0	11.0	162.0	0.0	.	191	.	.	Atlas-INDEL
EFCAB7	84455	hgsc.bcm.edu	hg19	1	64034025	64034025	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EFCAB7	NM_032437	exon12	c.1541delC	p.P514fs	.	.	143.0	10.0	100.0	0.0	.	45	.	.	Atlas-INDEL
NUCB2	4925	hgsc.bcm.edu	hg19	11	17332420	17332420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUCB2	NM_005013	exon7	c.531delT	p.F177fs	.	.	157.0	11.0	130.0	0.0	.	31	.	.	Atlas-INDEL
WWP1	11059	hgsc.bcm.edu	hg19	8	87454970	87454970	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WWP1	NM_007013	exon18	c.1960delC	p.L654fs	.	.	165.0	12.0	143.0	0.0	.	97	.	.	Atlas-INDEL
MB21D1	115004	hgsc.bcm.edu	hg19	6	74161746	74161746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MB21D1	NM_138441	exon1	c.160delG	p.A54fs	.	.	179.0	12.0	145.0	0.0	.	33	.	.	Atlas-INDEL
CCDC59	29080	hgsc.bcm.edu	hg19	12	82746994	82746994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC59	NM_014167	exon4	c.663delG	p.K221fs	.	.	190.0	12.0	163.0	0.0	.	17	.	.	Atlas-INDEL
WDSUB1	151525	hgsc.bcm.edu	hg19	2	160092653	160092653	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDSUB1	NM_152528	exon11	c.1323delG	p.K441fs	.	.	148.0	11.0	110.0	0.0	.	39	.	.	Atlas-INDEL
KANSL1L	151050	hgsc.bcm.edu	hg19	2	211018375	211018375	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152519	exon2	c.933delT	p.N311fs	.	.	257.0	16.0	205.0	0.0	.	.	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179483342	179483342	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon251	c.46936delG	p.A15646fs	.	.	129.0	12.0	83.0	0.0	.	18412	.	.	Atlas-INDEL
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184039824	184039824	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G1	NM_001194947	exon10	c.1472delT	p.L491fs	.	.	224.0	16.0	177.0	0.0	.	151	.	.	Atlas-INDEL
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37508625	37508625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD30A	NM_052997	exon34	c.3816delC	p.S1272fs	.	.	199.0	12.0	135.0	0.0	.	448	.	.	Atlas-INDEL
AK7	122481	hgsc.bcm.edu	hg19	14	96937927	96937927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AK7	NM_152327	exon13	c.1469delC	p.A490fs	.	.	162.0	13.0	107.0	0.0	.	69	.	.	Atlas-INDEL
SUGP2	10147	hgsc.bcm.edu	hg19	19	19136181	19136181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUGP2	NM_014884	exon3	c.977delC	p.S326X	.	.	159.0	10.0	102.0	0.0	.	107	.	.	Atlas-INDEL
TOP3A	7156	hgsc.bcm.edu	hg19	17	18217965	18217965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TOP3A	NM_004618	exon1	c.129delC	p.N43fs	.	.	216.0	15.0	151.0	0.0	.	85	.	.	Atlas-INDEL
FANCM	57697	hgsc.bcm.edu	hg19	14	45654537	45654537	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FANCM	NM_020937	exon18	c.4632delC	p.D1544fs	.	.	188.0	13.0	153.0	0.0	.	225	.	.	Atlas-INDEL
C11orf30	56946	hgsc.bcm.edu	hg19	11	76162945	76162945	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C11orf30	NM_020193	exon3	c.113delA	p.Q38fs	.	.	173.0	12.0	88.0	0.0	.	123	.	.	Atlas-INDEL
NUP205	23165	hgsc.bcm.edu	hg19	7	135311045	135311045	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP205	NM_015135	exon33	c.4728delA	p.S1576fs	.	.	129.0	10.0	91.0	0.0	.	198	.	.	Atlas-INDEL
NDRG3	57446	hgsc.bcm.edu	hg19	20	35310974	35310974	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NDRG3	NM_032013	exon7	c.392delG	p.S131fs	.	.	211.0	16.0	135.0	0.0	.	32	.	.	Atlas-INDEL
RPGR	6103	hgsc.bcm.edu	hg19	X	38146456	38146456	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPGR	NM_001034853	exon15	c.1797delT	p.N599fs	.	.	181.0	11.0	116.0	0.0	.	175	.	.	Atlas-INDEL
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139905676	139905676	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ANKHD1-EIF4EBP3,colon,carcinoma,0,2	ANKHD1	NM_017747	exon26	c.4587delG	p.G1529fs	.	.	134.0	10.0	111.0	0.0	.	233	.	.	Atlas-INDEL
GOSR1	9527	hgsc.bcm.edu	hg19	17	28849276	28849276	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GOSR1	NM_004871	exon9	c.632delG	p.R211fs	.	.	177.0	12.0	147.0	0.0	.	25	.	.	Atlas-INDEL
SLFN12L	100506736	hgsc.bcm.edu	hg19	17	33806378	33806378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLFN12L	NM_001195790	exon2	c.852delT	p.N284fs	.	.	189.0	12.0	121.0	0.0	.	140	.	.	Atlas-INDEL
SCG2	7857	hgsc.bcm.edu	hg19	2	224462280	224462280	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCG2	NM_003469	exon2	c.1722delG	p.P574fs	.	.	249.0	15.0	187.0	0.0	.	99	.	.	Atlas-INDEL
SLC44A3	126969	hgsc.bcm.edu	hg19	1	95356749	95356749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC44A3	NM_001114106	exon13	c.1545delC	p.F515fs	.	.	189.0	12.0	150.0	0.0	.	109	.	.	Atlas-INDEL
ZNF366	167465	hgsc.bcm.edu	hg19	5	71739993	71739993	+	Frame_Shift_Del	DEL	C	C	-	rs34417316		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF366	NM_152625	exon5	c.1826delA	p.E609fs	.	.	141.0	10.0	122.0	0.0	.	108	.	.	Atlas-INDEL
GPC5	2262	hgsc.bcm.edu	hg19	13	92345489	92345489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPC5	NM_004466	exon3	c.373delC	p.L125fs	.	.	166.0	10.0	162.0	0.0	.	140	.	.	Atlas-INDEL
REL	5966	hgsc.bcm.edu	hg19	2	61147771	61147771	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	REL	NM_002908	exon10	c.1080delC	p.F360fs	.	.	213.0	13.0	153.0	0.0	.	48	.	.	Atlas-INDEL
EXD3	54932	hgsc.bcm.edu	hg19	9	140268006	140268006	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXD3	NM_017820	exon4	c.167delT	p.L56fs	.	.	183.0	11.0	151.0	0.0	.	86	.	.	Atlas-INDEL
CDH23	64072	hgsc.bcm.edu	hg19	10	73326586	73326586	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH23	NM_052836	exon7	c.516delG	p.Q172fs	.	.	120.0	10.0	128.0	0.0	.	365	.	.	Atlas-INDEL
EPHA10	284656	hgsc.bcm.edu	hg19	1	38184055	38184055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA10	NM_001099439	exon17	c.3017delT	p.V1006fs	.	.	230.0	15.0	169.0	0.0	.	120	.	.	Atlas-INDEL
CEP76	79959	hgsc.bcm.edu	hg19	18	12678387	12678387	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CEP76	NM_024899	exon10	c.1345delC	p.P449fs	.	.	154.0	10.0	134.0	0.0	.	45	.	.	Atlas-INDEL
APC	324	hgsc.bcm.edu	hg19	5	112164604	112164604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	APC	NM_001127510	exon15	c.1677delT	p.S559fs	.	.	239.0	16.0	203.0	0.0	.	4158	.	.	Atlas-INDEL
SLC3A1	6519	hgsc.bcm.edu	hg19	2	44502687	44502687	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC3A1	NM_000341	exon1	c.12delT	p.D4fs	.	.	246.0	15.0	169.0	0.0	.	62	.	.	Atlas-INDEL
SCAF11	9169	hgsc.bcm.edu	hg19	12	46328022	46328022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCAF11	NM_004719	exon8	c.570delC	p.F190fs	.	.	171.0	11.0	118.0	0.0	.	145	.	.	Atlas-INDEL
LOC100873065	0	hgsc.bcm.edu	hg19	X	23020376	23020376	+	RNA	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	229.0	14.0	188.0	0.0	.	.	.	.	Atlas-INDEL
TRAF5	7188	hgsc.bcm.edu	hg19	1	211526743	211526743	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRAF5	NM_001033910	exon2	c.161delA	p.N54fs	.	.	158.0	10.0	82.0	0.0	.	64	.	.	Atlas-INDEL
UBAC1	10422	hgsc.bcm.edu	hg19	9	138845578	138845578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBAC1	NM_016172	exon3	c.282delG	p.K94fs	.	.	120.0	10.0	116.0	0.0	.	40	.	.	Atlas-INDEL
MAN2B1	4125	hgsc.bcm.edu	hg19	19	12760238	12760238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAN2B1	NM_000528	exon19	c.2273delA	p.D758fs	.	.	216.0	18.0	152.0	0.0	.	91	.	.	Atlas-INDEL
RALGAPA2	57186	hgsc.bcm.edu	hg19	20	20493319	20493319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RALGAPA2	NM_020343	exon32	c.4695delG	p.L1565fs	.	.	187.0	13.0	148.0	0.0	.	274	.	.	Atlas-INDEL
PFAS	5198	hgsc.bcm.edu	hg19	17	8172524	8172524	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PFAS	NM_012393	exon28	c.3958delT	p.S1320fs	.	.	114.0	11.0	144.0	0.0	.	91	.	.	Atlas-INDEL
FZD8	8325	hgsc.bcm.edu	hg19	10	35929138	35929138	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FZD8	NM_031866	exon1	c.1221delC	p.G407fs	.	.	117.0	10.0	61.0	0.0	.	41	.	.	Atlas-INDEL
LAMA3	3909	hgsc.bcm.edu	hg19	18	21399914	21399914	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA3	NM_001127717	exon19	c.2256delA	p.A752fs	.	.	312.0	20.0	199.0	0.0	.	397	.	.	Atlas-INDEL
CCDC38	120935	hgsc.bcm.edu	hg19	12	96292465	96292465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC38	NM_182496	exon6	c.415delG	p.D139fs	.	.	313.0	19.0	285.0	0.0	.	45	.	.	Atlas-INDEL
TRIP10	9322	hgsc.bcm.edu	hg19	19	6750606	6750606	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRIP10	NM_004240	exon13	c.1450delT	p.S484fs	.	.	216.0	15.0	189.0	0.0	.	104	.	.	Atlas-INDEL
ACTN1	87	hgsc.bcm.edu	hg19	14	69345708	69345708	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACTN1	NM_001102	exon19	c.2360delA	p.Q787fs	.	.	176.0	11.0	147.0	0.0	.	77	.	.	Atlas-INDEL
CREBRF	153222	hgsc.bcm.edu	hg19	5	172537584	172537584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_153607	exon6	c.1476delT	p.P492fs	.	.	161.0	10.0	143.0	0.0	.	.	.	.	Atlas-INDEL
MYT1L	23040	hgsc.bcm.edu	hg19	2	1795691	1795691	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYT1L	NM_015025	exon25	c.3504delT	p.N1168fs	.	.	160.0	11.0	126.0	0.0	.	241	.	.	Atlas-INDEL
IL1R2	7850	hgsc.bcm.edu	hg19	2	102636130	102636130	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IL1R2	NM_004633	exon5	c.543delG	p.E181fs	.	.	178.0	11.0	129.0	0.0	.	58	.	.	Atlas-INDEL
ESF1	51575	hgsc.bcm.edu	hg19	20	13695562	13695562	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESF1	NM_001276380	exon14	c.2516delC	p.T839fs	.	.	149.0	10.0	96.0	0.0	.	77	.	.	Atlas-INDEL
TMEM173	340061	hgsc.bcm.edu	hg19	5	138857961	138857961	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM173	NM_198282	exon6	c.654delC	p.N218fs	.	.	151.0	43.0	170.0	0.0	.	19	.	.	Atlas-Indel,Pindel
COL9A3	1299	hgsc.bcm.edu	hg19	20	61458146	61458146	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL9A3	NM_001853	exon15	c.765delT	p.P255fs	.	.	134.0	10.0	85.0	0.0	.	70	.	.	Atlas-INDEL
CPO	130749	hgsc.bcm.edu	hg19	2	207833909	207833909	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPO	NM_173077	exon9	c.873delA	p.S291fs	.	.	148.0	10.0	119.0	0.0	.	42	.	.	Atlas-INDEL
SEC14L4	284904	hgsc.bcm.edu	hg19	22	30887947	30887947	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC14L4	NM_001161368	exon10	c.786delT	p.G262fs	.	.	158.0	10.0	118.0	0.0	.	43	.	.	Atlas-INDEL
MYOM3	127294	hgsc.bcm.edu	hg19	1	24394840	24394840	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM3	NM_152372	exon26	c.3169delG	p.D1057fs	.	.	165.0	10.0	147.0	0.0	.	131	.	.	Atlas-INDEL
HAGHL	84264	hgsc.bcm.edu	hg19	16	777988	777988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HAGHL	NM_032304	exon2	c.128delA	p.E43fs	.	.	246.0	15.0	217.0	0.0	.	18	.	.	Atlas-INDEL
ZNF195	7748	hgsc.bcm.edu	hg19	11	3392251	3392251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF195	NM_001256824	exon4	c.193delG	p.E65fs	.	.	125.0	10.0	88.0	0.0	.	77	.	.	Atlas-INDEL
TK1	7083	hgsc.bcm.edu	hg19	17	76170874	76170874	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TK1	NM_003258	exon7	c.672delA	p.P224fs	.	.	173.0	11.0	116.0	0.0	.	23	.	.	Atlas-INDEL
MTRF1L	54516	hgsc.bcm.edu	hg19	6	153315778	153315778	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTRF1L	NM_019041	exon4	c.558delT	p.G186fs	.	.	121.0	10.0	123.0	0.0	.	21	.	.	Atlas-INDEL
CDC23	8697	hgsc.bcm.edu	hg19	5	137537124	137537124	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC23	NM_004661	exon5	c.430delG	p.G144fs	.	.	147.0	10.0	108.0	0.0	.	46	.	.	Atlas-INDEL
DOCK1	1793	hgsc.bcm.edu	hg19	10	129242484	129242484	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK1	NM_001380	exon50	c.5290delT	p.S1764fs	.	.	139.0	10.0	99.0	0.0	.	188	.	.	Atlas-INDEL
ADAR	103	hgsc.bcm.edu	hg19	1	154561054	154561054	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAR	NM_001111	exon10	c.2859delG	p.K953fs	.	.	156.0	10.0	59.0	0.0	.	113	.	.	Atlas-INDEL
TEP1	7011	hgsc.bcm.edu	hg19	14	20846338	20846338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEP1	NM_007110	exon39	c.5567delT	p.V1856fs	.	.	174.0	13.0	154.0	0.0	.	224	.	.	Atlas-INDEL
NUP155	9631	hgsc.bcm.edu	hg19	5	37309279	37309279	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP155	NM_153485	exon24	c.2720delT	p.I907fs	.	.	150.0	11.0	166.0	0.0	.	116	.	.	Atlas-INDEL
KDM1B	221656	hgsc.bcm.edu	hg19	6	18197380	18197380	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM1B	NM_153042	exon9	c.665delA	p.Y222fs	.	.	159.0	10.0	196.0	0.0	.	58	.	.	Atlas-INDEL
ZFHX3	463	hgsc.bcm.edu	hg19	16	72993684	72993684	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFHX3	NM_006885	exon2	c.362delA	p.D121fs	.	.	179.0	14.0	166.0	0.0	.	404	.	.	Atlas-INDEL
CKAP2L	150468	hgsc.bcm.edu	hg19	2	113520086	113520086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CKAP2L	NM_152515	exon2	c.99delC	p.N33fs	.	.	156.0	10.0	83.0	0.0	.	54	.	.	Atlas-INDEL
ADAM33	80332	hgsc.bcm.edu	hg19	20	3650236	3650236	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAM33	NM_025220	exon20	c.2290delA	p.M764fs	.	.	161.0	10.0	120.0	0.0	.	76	.	.	Atlas-INDEL
LEPR	3953	hgsc.bcm.edu	hg19	1	66064394	66064394	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LEPR	NM_002303	exon8	c.900delT	p.P300fs	.	.	205.0	15.0	179.0	0.0	.	284	.	.	Atlas-INDEL
CAPN3	825	hgsc.bcm.edu	hg19	15	42698130	42698130	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	CAPN3	NM_000070	exon15	c.1788delG	p.K596fs	.	.	156.0	11.0	110.0	0.0	.	172	.	.	Atlas-INDEL
ANXA8	653145	hgsc.bcm.edu	hg19	10	47169805	47169805	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANXA8	NM_001271702	exon2	c.95delA	p.K32fs	.	.	17.0	10.0	1.0	0.0	.	3	.	.	Atlas-INDEL
ZFP106	64397	hgsc.bcm.edu	hg19	15	42742679	42742679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFP106	NM_022473	exon2	c.1723delG	p.G575fs	.	.	155.0	10.0	128.0	0.0	.	117	.	.	Atlas-INDEL
FAM200B	285550	hgsc.bcm.edu	hg19	4	15689819	15689819	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM200B	NM_001145191	exon2	c.1218delC	p.H406fs	.	.	153.0	10.0	136.0	0.0	.	56	.	.	Atlas-INDEL
MBD5	55777	hgsc.bcm.edu	hg19	2	149247480	149247480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	MBD5	NM_018328	exon12	c.3579delC	p.S1193fs	.	.	166.0	11.0	121.0	0.0	.	164	.	.	Atlas-INDEL
FTSJ2	29960	hgsc.bcm.edu	hg19	7	2274931	2274931	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FTSJ2	NM_013393	exon3	c.568delA	p.T190fs	.	.	179.0	17.0	154.0	0.0	.	22	.	.	Atlas-INDEL
PIGN	23556	hgsc.bcm.edu	hg19	18	59752471	59752471	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIGN	NM_176787	exon26	c.2398delG	p.G800fs	.	.	190.0	12.0	154.0	0.0	.	62	.	.	Atlas-INDEL
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37505286	37505286	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD30A	NM_052997	exon32	c.2878delC	p.Q960fs	.	.	363.0	25.0	277.0	0.0	.	448	.	.	Atlas-INDEL
KRTAP5-2	440021	hgsc.bcm.edu	hg19	11	1619161	1619161	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KRTAP5-2	NM_001004325	exon1	c.321delC	p.G107fs	.	.	238.0	15.0	180.0	0.0	.	38	.	.	Atlas-INDEL
PTPRN2	5799	hgsc.bcm.edu	hg19	7	157926551	157926551	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTPRN2	NM_130843	exon9	c.1375delC	p.Q459fs	.	.	128.0	10.0	97.0	0.0	.	243	.	.	Atlas-INDEL
SLC14A1	6563	hgsc.bcm.edu	hg19	18	43329808	43329808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC14A1	NM_001146037	exon9	c.1229delC	p.T410fs	.	.	248.0	15.0	198.0	0.0	.	84	.	.	Atlas-INDEL
CHFR	55743	hgsc.bcm.edu	hg19	12	133418144	133418144	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CHFR	NM_001161344	exon18	c.1992delC	p.N664fs	.	.	123.0	10.0	160.0	0.0	.	83	.	.	Atlas-INDEL
POLG	5428	hgsc.bcm.edu	hg19	15	89860003	89860003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLG	NM_001126131	exon23	c.3700delC	p.R1234fs	.	.	168.0	11.0	192.0	0.0	.	75	.	.	Atlas-INDEL
CKMT2	1160	hgsc.bcm.edu	hg19	5	80552810	80552810	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CKMT2	NM_001825	exon7	c.745delA	p.R249fs	.	.	206.0	15.0	185.0	0.0	.	44	.	.	Atlas-INDEL
SH2D2A	9047	hgsc.bcm.edu	hg19	1	156786488	156786488	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SH2D2A	NM_003975	exon1	c.14delT	p.L5fs	.	.	156.0	10.0	83.0	0.0	.	78	.	.	Atlas-INDEL
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77798633	77798633	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYCBP2	NM_015057	exon20	c.2893delG	p.G965fs	.	.	157.0	11.0	218.0	0.0	.	1029	.	.	Atlas-INDEL
RAB11FIP3	9727	hgsc.bcm.edu	hg19	16	538888	538888	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAB11FIP3	NM_014700	exon5	c.1152delC	p.I384fs	.	.	140.0	12.0	117.0	0.0	.	31	.	.	Atlas-INDEL
SHOX2	6474	hgsc.bcm.edu	hg19	3	157820545	157820545	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SHOX2	NM_003030	exon3	c.550delG	p.D184fs	.	.	230.0	14.0	212.0	0.0	.	84	.	.	Atlas-INDEL
ZCWPW1	55063	hgsc.bcm.edu	hg19	7	99998706	99998706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZCWPW1	NM_017984	exon18	c.1879delC	p.Q627fs	.	.	207.0	13.0	95.0	0.0	.	41	.	.	Atlas-INDEL
LACE1	246269	hgsc.bcm.edu	hg19	6	108668193	108668193	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	LACE1	NM_145315	exon3	c.364delC	p.L122fs	.	.	142.0	10.0	124.0	0.0	.	30	.	.	Atlas-INDEL
ZFP64	55734	hgsc.bcm.edu	hg19	20	50713933	50713933	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZFP64	NM_199427	exon7	c.956delG	p.R319fs	.	.	179.0	11.0	131.0	0.0	.	240	.	.	Atlas-INDEL
PNPLA7	375775	hgsc.bcm.edu	hg19	9	140356679	140356679	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNPLA7	NM_001098537	exon31	c.3598delA	p.I1200fs	.	.	166.0	10.0	165.0	0.0	.	124	.	.	Atlas-INDEL
EIF4G3	8672	hgsc.bcm.edu	hg19	1	21306905	21306905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EIF4G3	NM_001198803	exon10	c.281delA	p.Q94fs	.	.	192.0	12.0	117.0	0.0	.	300	.	.	Atlas-INDEL
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140214086	140214086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCDHA7	NM_031852	exon1	c.117delT	p.A39fs	.	.	182.0	11.0	155.0	0.0	.	367	.	.	Atlas-INDEL
UTP15	84135	hgsc.bcm.edu	hg19	5	72874641	72874641	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP15	NM_032175	exon10	c.1109delA	p.H370fs	.	.	147.0	10.0	128.0	0.0	.	30	.	.	Atlas-INDEL
ATG4C	84938	hgsc.bcm.edu	hg19	1	63284957	63284957	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATG4C	NM_178221	exon5	c.675delG	p.G225fs	.	.	177.0	11.0	157.0	0.0	.	96	.	.	Atlas-INDEL
SARDH	1757	hgsc.bcm.edu	hg19	9	136559454	136559454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SARDH	NM_001134707	exon15	c.1848delC	p.G616fs	.	.	273.0	17.0	225.0	0.0	.	112	.	.	Atlas-INDEL
DYNC1LI1	51143	hgsc.bcm.edu	hg19	3	32611883	32611883	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYNC1LI1	NM_016141	exon2	c.176delG	p.R59fs	.	.	180.0	11.0	135.0	0.0	.	23	.	.	Atlas-INDEL
UTP11L	51118	hgsc.bcm.edu	hg19	1	38483393	38483393	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP11L	NM_016037	exon3	c.178delG	p.E60fs	.	.	188.0	15.0	136.0	0.0	.	17	.	.	Atlas-INDEL
OR2L5	81466	hgsc.bcm.edu	hg19	1	248186140	248186140	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001258284	exon1	c.890delT	p.M297fs	.	.	162.0	12.0	108.0	0.0	.	.	.	.	Atlas-INDEL
CLIP4	79745	hgsc.bcm.edu	hg19	2	29383293	29383293	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLIP4	NM_024692	exon12	c.1493delT	p.L498fs	.	.	166.0	11.0	133.0	0.0	.	69	.	.	Atlas-INDEL
JAKMIP2	9832	hgsc.bcm.edu	hg19	5	147021317	147021317	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	JAKMIP2	NM_001270934	exon8	c.1236delG	p.K412fs	.	.	175.0	12.0	148.0	0.0	.	154	.	.	Atlas-INDEL
RPRD1B	58490	hgsc.bcm.edu	hg19	20	36676769	36676769	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RPRD1B	NM_021215	exon3	c.300delT	p.C100X	.	.	155.0	12.0	157.0	0.0	.	25	.	.	Atlas-INDEL
DEPDC7	91614	hgsc.bcm.edu	hg19	11	33050250	33050250	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DEPDC7	NM_001077242	exon4	c.693delT	p.P231fs	.	.	166.0	10.0	132.0	0.0	.	94	.	.	Atlas-INDEL
ESYT1	23344	hgsc.bcm.edu	hg19	12	56525317	56525317	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ESYT1	NM_015292	exon6	c.770delT	p.V257fs	.	.	193.0	12.0	168.0	0.0	.	84	.	.	Atlas-INDEL
PGAP1	80055	hgsc.bcm.edu	hg19	2	197737220	197737220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PGAP1	NM_024989	exon18	c.1674delC	p.N558fs	.	.	171.0	11.0	138.0	0.0	.	84	.	.	Atlas-INDEL
CD97	976	hgsc.bcm.edu	hg19	19	14508727	14508727	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD97	NM_078481	exon8	c.798delG	p.P266fs	.	.	197.0	13.0	149.0	0.0	.	86	.	.	Atlas-INDEL
MLKL	197259	hgsc.bcm.edu	hg19	16	74725195	74725195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MLKL	NM_152649	exon4	c.703delC	p.L235fs	.	.	161.0	12.0	139.0	0.0	.	51	.	.	Atlas-INDEL
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100585744	100585744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABI3BP	NM_015429	exon10	c.989delT	p.I330fs	.	.	147.0	11.0	136.0	0.0	.	305	.	.	Atlas-INDEL
EPHA3	2042	hgsc.bcm.edu	hg19	3	89259454	89259454	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA3	NM_005233	exon3	c.597delC	p.F199fs	.	.	283.0	17.0	202.0	0.0	.	501	.	.	Atlas-INDEL
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193002803	193002803	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP13A5	NM_198505	exon27	c.3127delG	p.E1043fs	.	.	190.0	12.0	153.0	0.0	.	171	.	.	Atlas-INDEL
SLC43A1	8501	hgsc.bcm.edu	hg19	11	57259093	57259093	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC43A1	NM_001198810	exon10	c.1026delT	p.N342fs	.	.	161.0	10.0	130.0	0.0	.	48	.	.	Atlas-INDEL
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204419065	204419065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIK3C2B	NM_002646	exon14	c.2148delA	p.P716fs	.	.	214.0	14.0	122.0	0.0	.	142	.	.	Atlas-INDEL
PARVA	55742	hgsc.bcm.edu	hg19	11	12499491	12499491	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PARVA	NM_018222	exon4	c.514delC	p.L172fs	.	.	173.0	11.0	133.0	0.0	.	27	.	.	Atlas-INDEL
JPH4	84502	hgsc.bcm.edu	hg19	14	24040276	24040276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	JPH4	NM_001146028	exon5	c.1665delG	p.P555fs	.	.	167.0	11.0	127.0	0.0	.	64	.	.	Atlas-INDEL
UBR2	23304	hgsc.bcm.edu	hg19	6	42637938	42637938	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UBR2	NM_015255	exon35	c.3989delT	p.I1330fs	.	.	155.0	10.0	136.0	0.0	.	134	.	.	Atlas-INDEL
PHYH	5264	hgsc.bcm.edu	hg19	10	13336580	13336580	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHYH	NM_006214	exon4	c.263delT	p.I88fs	.	.	166.0	10.0	157.0	0.0	.	50	.	.	Atlas-INDEL
TUB	7275	hgsc.bcm.edu	hg19	11	8117161	8117161	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUB	NM_003320	exon6	c.678delT	p.G226fs	.	.	216.0	13.0	174.0	0.0	.	71	.	.	Atlas-INDEL
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112917159	112917159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YTHDC2	NM_022828	exon25	c.3399delA	p.L1133fs	.	.	246.0	15.0	178.0	0.0	.	118	.	.	Atlas-INDEL
VASH2	79805	hgsc.bcm.edu	hg19	1	213146180	213146180	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VASH2	NM_024749	exon4	c.623delT	p.V208fs	.	.	243.0	17.0	153.0	0.0	.	55	.	.	Atlas-INDEL
RGS11	8786	hgsc.bcm.edu	hg19	16	323531	323531	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS11	NM_183337	exon8	c.533delA	p.D178fs	.	.	197.0	13.0	201.0	0.0	.	29	.	.	Atlas-INDEL
SENP7	57337	hgsc.bcm.edu	hg19	3	101090875	101090875	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SENP7	NM_020654	exon7	c.774delA	p.L258fs	.	.	166.0	10.0	109.0	0.0	.	170	.	.	Atlas-INDEL
ZNF330	27309	hgsc.bcm.edu	hg19	4	142154925	142154925	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF330	NM_014487	exon10	c.744delT	p.S248fs	.	.	161.0	12.0	199.0	0.0	.	31	.	.	Atlas-INDEL
GPCPD1	56261	hgsc.bcm.edu	hg19	20	5550794	5550794	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPCPD1	NM_019593	exon12	c.1149delG	p.K383fs	.	.	280.0	17.0	128.0	0.0	.	52	.	.	Atlas-INDEL
DDX12P	440081	hgsc.bcm.edu	hg19	12	9574420	9574420	+	RNA	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	258.0	16.0	222.0	0.0	.	.	.	.	Atlas-INDEL
RGS6	9628	hgsc.bcm.edu	hg19	14	72985093	72985093	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RGS6	NM_001204424	exon15	c.1125delA	p.Q375fs	.	.	171.0	14.0	110.0	0.0	.	92	.	.	Atlas-INDEL
ENTPD5	957	hgsc.bcm.edu	hg19	14	74443074	74443074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ENTPD5	NM_001249	exon9	c.596delA	p.D199fs	.	.	147.0	10.0	109.0	0.0	.	26	.	.	Atlas-INDEL
PTS	5805	hgsc.bcm.edu	hg19	11	112101391	112101391	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTS	NM_000317	exon4	c.228delC	p.L76fs	.	.	136.0	10.0	82.0	0.0	.	7	.	.	Atlas-INDEL
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103158325	103158325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYNC2H1	NM_001080463	exon76	c.11106delT	p.C3702X	.	.	230.0	15.0	185.0	0.0	.	246	.	.	Atlas-INDEL
INF2	64423	hgsc.bcm.edu	hg19	14	105174185	105174185	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	INF2	NM_001031714	exon8	c.1580delG	p.S527fs	.	.	144.0	13.0	128.0	0.0	.	148	.	.	Atlas-Indel,Pindel
DMXL1	1657	hgsc.bcm.edu	hg19	5	118450216	118450216	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon6	c.543delA	p.E181fs	.	.	275.0	17.0	220.0	0.0	.	268	.	.	Atlas-INDEL
NPR1	4881	hgsc.bcm.edu	hg19	1	153654991	153654991	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NPR1	NM_000906	exon5	c.1188delG	p.L396fs	.	.	182.0	11.0	77.0	0.0	.	104	.	.	Atlas-INDEL
SPEM1	374768	hgsc.bcm.edu	hg19	17	7324238	7324238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPEM1	NM_199339	exon3	c.243delG	p.Q81fs	.	.	119.0	11.0	165.0	0.0	.	41	.	.	Atlas-INDEL
RTTN	25914	hgsc.bcm.edu	hg19	18	67801730	67801730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RTTN	NM_173630	exon23	c.2934delG	p.L978fs	.	.	142.0	10.0	119.0	0.0	.	184	.	.	Atlas-INDEL
HGS	9146	hgsc.bcm.edu	hg19	17	79660963	79660963	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HGS	NM_004712	exon11	c.903delG	p.A301fs	.	.	158.0	10.0	117.0	0.0	.	54	.	.	Atlas-INDEL
CUL3	8452	hgsc.bcm.edu	hg19	2	225368413	225368413	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CUL3	NM_001257198	exon9	c.1352delG	p.S451fs	.	.	154.0	10.0	128.0	0.0	.	96	.	.	Atlas-INDEL
PLCB1	23236	hgsc.bcm.edu	hg19	20	8130989	8130989	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCB1	NM_015192	exon2	c.147delG	p.L49fs	.	.	181.0	11.0	124.0	0.0	.	394	.	.	Atlas-INDEL
EPB41L4A	64097	hgsc.bcm.edu	hg19	5	111545590	111545590	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPB41L4A	NM_022140	exon13	c.1178delG	p.S393fs	.	.	152.0	10.0	89.0	0.0	.	130	.	.	Atlas-INDEL
UTP23	84294	hgsc.bcm.edu	hg19	8	117783923	117783923	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP23	NM_032334	exon3	c.591delG	p.K197fs	.	.	151.0	10.0	129.0	0.0	.	38	.	.	Atlas-INDEL
DGKE	8526	hgsc.bcm.edu	hg19	17	54926133	54926133	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DGKE	NM_003647	exon6	c.964delT	p.W322fs	.	.	193.0	12.0	158.0	0.0	.	47	.	.	Atlas-INDEL
SENP5	205564	hgsc.bcm.edu	hg19	3	196626588	196626588	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SENP5	NM_152699	exon3	c.1564delG	p.E522fs	.	.	175.0	11.0	190.0	0.0	.	68	.	.	Atlas-INDEL
LIMK1	3984	hgsc.bcm.edu	hg19	7	73523283	73523283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIMK1	NM_002314	exon10	c.1200delC	p.I400fs	.	.	211.0	14.0	85.0	0.0	.	55	.	.	Atlas-INDEL
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42050249	42050249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIVEP3	NM_024503	exon4	c.221delC	p.T74fs	.	.	179.0	12.0	126.0	0.0	.	235	.	.	Atlas-INDEL
OAF	220323	hgsc.bcm.edu	hg19	11	120097608	120097608	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OAF	NM_178507	exon3	c.449delA	p.Q150fs	.	.	146.0	11.0	75.0	0.0	.	12	.	.	Atlas-INDEL
MBD5	55777	hgsc.bcm.edu	hg19	2	149243489	149243489	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MBD5	NM_018328	exon11	c.3023delA	p.N1008fs	.	.	204.0	13.0	155.0	0.0	.	164	.	.	Atlas-INDEL
SNTB1	6641	hgsc.bcm.edu	hg19	8	121823695	121823695	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNTB1	NM_021021	exon1	c.390delC	p.G130fs	.	.	243.0	15.0	166.0	0.0	.	54	.	.	Atlas-INDEL
PLSCR5	389158	hgsc.bcm.edu	hg19	3	146311885	146311885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLSCR5	NM_001085420	exon4	c.276delC	p.N92fs	.	.	138.0	10.0	111.0	0.0	.	35	.	.	Atlas-INDEL
ANKRD7	56311	hgsc.bcm.edu	hg19	7	117876139	117876139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD7	NM_019644	exon4	c.512delC	p.P171fs	.	.	159.0	11.0	110.0	0.0	.	44	.	.	Atlas-INDEL
PIDD	55367	hgsc.bcm.edu	hg19	11	799358	799358	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIDD	NM_145886	exon16	c.2683delG	p.A895fs	.	.	208.0	13.0	204.0	0.0	.	76	.	.	Atlas-INDEL
UNC80	285175	hgsc.bcm.edu	hg19	2	210682639	210682639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC80	NM_032504	exon11	c.1655delA	p.D552fs	.	.	152.0	10.0	108.0	0.0	.	280	.	.	Atlas-INDEL
FBXL12	54850	hgsc.bcm.edu	hg19	19	9922291	9922291	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FBXL12	NM_017703	exon3	c.263delA	p.Q88fs	.	.	175.0	11.0	120.0	0.0	.	17	.	.	Atlas-INDEL
PCSK2	5126	hgsc.bcm.edu	hg19	20	17208071	17208071	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCSK2	NM_002594	exon1	c.120delA	p.K40fs	.	.	205.0	14.0	186.0	0.0	.	112	.	.	Atlas-INDEL
HIAT1	64645	hgsc.bcm.edu	hg19	1	100542770	100542770	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIAT1	NM_033055	exon9	c.940delA	p.I314fs	.	.	194.0	12.0	131.0	0.0	.	46	.	.	Atlas-INDEL
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25505341	25505341	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNMT3A	NM_175629	exon4	c.418delA	p.K140fs	.	.	158.0	12.0	121.0	0.0	.	1807	.	.	Atlas-INDEL
HDLBP	3069	hgsc.bcm.edu	hg19	2	242170362	242170362	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HDLBP	NM_005336	exon26	c.3289-2T>-	.	.	.	149.0	11.0	118.0	0.0	.	118	.	.	Atlas-INDEL
KIF21A	55605	hgsc.bcm.edu	hg19	12	39688246	39688246	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF21A	NM_001173464	exon38	c.5006delA	p.E1669fs	.	.	193.0	13.0	199.0	0.0	.	238	.	.	Atlas-INDEL
FASTKD1	79675	hgsc.bcm.edu	hg19	2	170387133	170387133	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FASTKD1	NM_024622	exon14	c.2407delC	p.R803fs	.	.	285.0	20.0	230.0	0.0	.	86	.	.	Atlas-INDEL
TDG	6996	hgsc.bcm.edu	hg19	12	104370720	104370720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TDG	NM_003211	exon2	c.47delC	p.A16fs	.	.	195.0	12.0	160.0	0.0	.	43	.	.	Atlas-INDEL
ASH1L	55870	hgsc.bcm.edu	hg19	1	155450361	155450361	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASH1L	NM_018489	exon3	c.2301delT	p.P767fs	.	.	282.0	17.0	141.0	0.0	.	279	.	.	Atlas-INDEL
TBC1D1	23216	hgsc.bcm.edu	hg19	4	38097556	38097556	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D1	NM_001253912	exon16	c.2524delG	p.E842fs	.	.	102.0	10.0	88.0	0.0	.	94	.	.	Atlas-INDEL
SAMD4A	23034	hgsc.bcm.edu	hg19	14	55231225	55231225	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SAMD4A	NM_015589	exon7	c.1562delA	p.Y521fs	.	.	121.0	10.0	81.0	0.0	.	68	.	.	Atlas-INDEL
SUPT5H	6829	hgsc.bcm.edu	hg19	19	39955533	39955533	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SUPT5H	NM_003169	exon10	c.719delA	p.E240fs	.	.	194.0	12.0	141.0	0.0	.	119	.	.	Atlas-INDEL
UNC80	285175	hgsc.bcm.edu	hg19	2	210837002	210837002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC80	NM_032504	exon54	c.8135delT	p.L2712X	.	.	315.0	19.0	279.0	0.0	.	280	.	.	Atlas-INDEL
IQCC	55721	hgsc.bcm.edu	hg19	1	32671421	32671421	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IQCC	NM_001160042	exon1	c.138delT	p.S46fs	.	.	221.0	15.0	164.0	0.0	.	46	.	.	Atlas-INDEL
MFAP3	4238	hgsc.bcm.edu	hg19	5	153432802	153432802	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MFAP3	NM_005927	exon3	c.617delT	p.I206fs	.	.	136.0	10.0	119.0	0.0	.	20	.	.	Atlas-INDEL
SLMAP	7871	hgsc.bcm.edu	hg19	3	57902753	57902753	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLMAP	NM_007159	exon19	c.2156delT	p.L719X	.	.	246.0	15.0	219.0	0.0	.	46	.	.	Atlas-INDEL
ZNF273	10793	hgsc.bcm.edu	hg19	7	64388426	64388426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF273	NM_021148	exon4	c.719delG	p.G240fs	.	.	183.0	11.0	73.0	0.0	.	45	.	.	Atlas-INDEL
NEK10	152110	hgsc.bcm.edu	hg19	3	27332187	27332187	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK10	NM_199347	exon20	c.1665delA	p.P555fs	.	.	141.0	11.0	89.0	0.0	.	271	.	.	Atlas-INDEL
C2orf57	165100	hgsc.bcm.edu	hg19	2	232457732	232457732	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	C2orf57,NS,carcinoma,0,1	C2orf57	NM_152614	exon1	c.69delG	p.E23fs	.	.	159.0	10.0	117.0	0.0	.	35	.	.	Atlas-INDEL
ITSN2	50618	hgsc.bcm.edu	hg19	2	24516590	24516590	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITSN2	NM_147152	exon15	c.1691delG	p.R564fs	.	.	196.0	14.0	161.0	0.0	.	224	.	.	Atlas-INDEL
TNXB	7148	hgsc.bcm.edu	hg19	6	32062950	32062950	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNXB	NM_019105	exon4	c.2262delC	p.G754fs	.	.	157.0	10.0	118.0	0.0	.	553	.	.	Atlas-INDEL
RCCD1	91433	hgsc.bcm.edu	hg19	15	91500927	91500927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RCCD1	NM_001017919	exon4	c.650delC	p.A217fs	.	.	226.0	16.0	153.0	0.0	.	9	.	.	Atlas-INDEL
MDN1	23195	hgsc.bcm.edu	hg19	6	90382309	90382309	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MDN1	NM_014611	exon81	c.13588delG	p.A4530fs	.	.	164.0	11.0	95.0	0.0	.	478	.	.	Atlas-INDEL
PPP2R5D	5528	hgsc.bcm.edu	hg19	6	42975751	42975751	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPP2R5D	NM_006245	exon7	c.804delG	p.K268fs	.	.	190.0	12.0	140.0	0.0	.	47	.	.	Atlas-INDEL
ANKRD32	84250	hgsc.bcm.edu	hg19	5	93989080	93989080	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD32	NM_032290	exon8	c.985delG	p.E329fs	.	.	213.0	16.0	133.0	0.0	.	117	.	.	Atlas-INDEL
KIAA0355	9710	hgsc.bcm.edu	hg19	19	34832365	34832365	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA0355	NM_014686	exon10	c.1525delA	p.R509fs	.	.	200.0	12.0	160.0	0.0	.	105	.	.	Atlas-INDEL
PKN2	5586	hgsc.bcm.edu	hg19	1	89206728	89206728	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PKN2	NM_006256	exon2	c.105delC	p.D35fs	.	.	135.0	11.0	108.0	0.0	.	109	.	.	Atlas-INDEL
BRPF3	27154	hgsc.bcm.edu	hg19	6	36179276	36179276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRPF3	NM_015695	exon7	c.2420delA	p.Q807fs	.	.	140.0	10.0	141.0	0.0	.	93	.	.	Atlas-INDEL
ANKRD42	338699	hgsc.bcm.edu	hg19	11	82938845	82938845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ANKRD42,NS,carcinoma,0,1	ANKRD42	NM_182603	exon7	c.759delG	p.K253fs	.	.	153.0	11.0	64.0	0.0	.	38	.	.	Atlas-INDEL
ARMC8	25852	hgsc.bcm.edu	hg19	3	137982594	137982594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARMC8	NM_015396	exon14	c.1105delG	p.E369fs	.	.	211.0	13.0	155.0	0.0	.	79	.	.	Atlas-INDEL
BET3L	100128327	hgsc.bcm.edu	hg19	6	116818120	116818120	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,2	BET3L	NM_001139444	exon5	c.544delT	p.X182E	.	.	135.0	12.0	104.0	0.0	.	18	.	.	Atlas-INDEL
LAMA4	3910	hgsc.bcm.edu	hg19	6	112450166	112450166	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA4	NM_001105206	exon31	c.4246delG	p.G1416fs	.	.	158.0	11.0	129.0	0.0	.	227	.	.	Atlas-INDEL
NOP16	51491	hgsc.bcm.edu	hg19	5	175812233	175812233	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOP16	NM_016391	exon4	c.383delA	p.E128fs	.	.	136.0	11.0	101.0	0.0	.	26	.	.	Atlas-INDEL
SMAP1	60682	hgsc.bcm.edu	hg19	6	71566736	71566736	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMAP1	NM_001044305	exon9	c.961+2A>-	.	.	.	135.0	10.0	128.0	0.0	.	77	.	.	Atlas-INDEL
C11orf73	51501	hgsc.bcm.edu	hg19	11	86056631	86056631	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C11orf73	NM_016401	exon5	c.544delG	p.E182fs	.	.	125.0	10.0	58.0	0.0	.	9	.	.	Atlas-INDEL
SNTB2	6645	hgsc.bcm.edu	hg19	16	69333538	69333538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNTB2	NM_006750	exon6	c.1390delG	p.E464fs	.	.	148.0	14.0	108.0	0.0	.	22	.	.	Atlas-INDEL
CCDC85C	317762	hgsc.bcm.edu	hg19	14	99983523	99983523	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC85C	NM_001144995	exon5	c.976-2C>-	.	.	.	140.0	12.0	120.0	0.0	.	3	.	.	Atlas-INDEL
SCN1A	6323	hgsc.bcm.edu	hg19	2	166903448	166903448	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN1A	NM_001165964	exon9	c.1210delG	p.V404fs	.	.	183.0	13.0	131.0	0.0	.	641	.	.	Atlas-Indel,Pindel
ARID2	196528	hgsc.bcm.edu	hg19	12	46243493	46243493	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARID2	NM_152641	exon14	c.1845delA	p.Q615fs	.	.	180.0	11.0	175.0	0.0	.	311	.	.	Atlas-INDEL
ARSJ	79642	hgsc.bcm.edu	hg19	4	114899693	114899693	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARSJ	NM_024590	exon1	c.299delC	p.T100fs	.	.	154.0	10.0	175.0	0.0	.	55	.	.	Atlas-INDEL
ZNF148	7707	hgsc.bcm.edu	hg19	3	125007010	125007010	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ZNF148,NS,carcinoma,+1,1	ZNF148	NM_021964	exon5	c.397delC	p.Q133fs	.	.	126.0	10.0	105.0	0.0	.	84	.	.	Atlas-INDEL
GAMT	2593	hgsc.bcm.edu	hg19	19	1398959	1398959	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GAMT	NM_138924	exon5	c.527delA	p.E176fs	.	.	285.0	20.0	197.0	0.0	.	39	.	.	Atlas-INDEL
DICER1	23405	hgsc.bcm.edu	hg19	14	95562262	95562262	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DICER1	NM_001271282	exon23	c.4996delT	p.F1666fs	.	.	166.0	11.0	139.0	0.0	.	181	.	.	Atlas-INDEL
RAB1A	5861	hgsc.bcm.edu	hg19	2	65316146	65316146	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAB1A	NM_004161	exon5	c.348delT	p.N116fs	.	.	153.0	10.0	122.0	0.0	.	15	.	.	Atlas-INDEL
CLDN2	9075	hgsc.bcm.edu	hg19	X	106171549	106171549	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLDN2	NM_001171092	exon2	c.90delG	p.W30X	.	.	116.0	10.0	93.0	0.0	.	22	.	.	Atlas-INDEL
GLRX2	51022	hgsc.bcm.edu	hg19	1	193066820	193066820	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLRX2	NM_016066	exon3	c.258delG	p.K86fs	.	.	187.0	12.0	113.0	0.0	.	9	.	.	Atlas-INDEL
PIAS2	9063	hgsc.bcm.edu	hg19	18	44444168	44444168	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PIAS2	NM_173206	exon3	c.544delG	p.A182fs	.	.	146.0	10.0	102.0	0.0	.	85	.	.	Atlas-INDEL
TPRN	286262	hgsc.bcm.edu	hg19	9	140087119	140087119	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPRN	NM_001128228	exon2	c.1751delG	p.S584fs	.	.	164.0	12.0	122.0	0.0	.	28	.	.	Atlas-INDEL
NR1H3	10062	hgsc.bcm.edu	hg19	11	47283563	47283563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR1H3	NM_001251934	exon7	c.999delC	p.A333fs	.	.	162.0	10.0	95.0	0.0	.	52	.	.	Atlas-INDEL
TEX13B	56156	hgsc.bcm.edu	hg19	X	107224619	107224619	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TEX13B	NM_031273	exon3	c.631delG	p.A211fs	.	.	170.0	11.0	134.0	0.0	.	40	.	.	Atlas-INDEL
NUMB	8650	hgsc.bcm.edu	hg19	14	73753987	73753987	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUMB	NM_001005744	exon9	c.487delG	p.A163fs	.	.	164.0	10.0	147.0	0.0	.	56	.	.	Atlas-INDEL
C6orf170	221322	hgsc.bcm.edu	hg19	6	121624805	121624805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf170	NM_152730	exon9	c.1039delG	p.A347fs	.	.	131.0	10.0	112.0	0.0	.	146	.	.	Atlas-INDEL
UNC45A	55898	hgsc.bcm.edu	hg19	15	91488144	91488144	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC45A	NM_018671	exon9	c.1049delT	p.V350fs	.	.	178.0	11.0	142.0	0.0	.	57	.	.	Atlas-INDEL
AP4M1	9179	hgsc.bcm.edu	hg19	7	99701731	99701731	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AP4M1	NM_004722	exon7	c.559delG	p.V187fs	.	.	171.0	11.0	81.0	0.0	.	39	.	.	Atlas-INDEL
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9275668	9275668	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD12	NM_001083625	exon10	c.5838+2A>-	.	.	.	160.0	10.0	168.0	0.0	.	167	.	.	Atlas-INDEL
AK7	122481	hgsc.bcm.edu	hg19	14	96916175	96916175	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AK7	NM_152327	exon9	c.906delG	p.Q302fs	.	.	157.0	13.0	92.0	0.0	.	69	.	.	Atlas-INDEL
NT5DC3	51559	hgsc.bcm.edu	hg19	12	104208851	104208851	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NT5DC3	NM_001031701	exon2	c.258delC	p.F86fs	.	.	148.0	12.0	136.0	0.0	.	113	.	.	Atlas-INDEL
ADAMTS1	9510	hgsc.bcm.edu	hg19	21	28210011	28210011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS1	NM_006988	exon9	c.2792delG	p.R931fs	.	.	204.0	14.0	257.0	0.0	.	131	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179528765	179528765	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTN	NM_001267550	exon169	c.36342delG	p.K12114fs	.	.	215.0	13.0	186.0	0.0	.	18412	.	.	Atlas-INDEL
RAD51AP2	729475	hgsc.bcm.edu	hg19	2	17698475	17698475	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAD51AP2	NM_001099218	exon1	c.1209delG	p.L403fs	.	.	180.0	14.0	131.0	0.0	.	134	.	.	Atlas-INDEL
SERPINF1	5176	hgsc.bcm.edu	hg19	17	1680585	1680585	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SERPINF1	NM_002615	exon8	c.1101delT	p.D367fs	.	.	163.0	10.0	239.0	0.0	.	31	.	.	Atlas-INDEL
SMEK2	57223	hgsc.bcm.edu	hg19	2	55791450	55791450	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMEK2	NM_001122964	exon15	c.2260delG	p.A754fs	.	.	178.0	11.0	128.0	0.0	.	86	.	.	Atlas-INDEL
TMPRSS11D	9407	hgsc.bcm.edu	hg19	4	68725283	68725283	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMPRSS11D	NM_004262	exon2	c.123delA	p.L41fs	.	.	144.0	10.0	112.0	0.0	.	68	.	.	Atlas-INDEL
NEK4	6787	hgsc.bcm.edu	hg19	3	52745814	52745814	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NEK4	NM_003157	exon16	c.2506delG	p.E836fs	.	.	163.0	12.0	176.0	0.0	.	51	.	.	Atlas-INDEL
BLZF1	8548	hgsc.bcm.edu	hg19	1	169351458	169351458	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	BLZF1	NM_003666	exon6	c.955delC	p.Q319fs	.	.	170.0	12.0	65.0	0.0	.	57	.	.	Atlas-INDEL
KDM2B	84678	hgsc.bcm.edu	hg19	12	121880092	121880092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KDM2B	NM_032590	exon19	c.3153delG	p.P1051fs	.	.	205.0	21.0	157.0	0.0	.	218	.	.	Atlas-INDEL
ZKSCAN7	55888	hgsc.bcm.edu	hg19	3	44606986	44606986	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_018651	exon3	c.430delG	p.A144fs	.	.	164.0	11.0	123.0	0.0	.	.	.	.	Atlas-INDEL
KANSL1L	151050	hgsc.bcm.edu	hg19	2	210887743	210887743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_152519	exon15	c.2895delG	p.K965fs	.	.	241.0	15.0	178.0	0.0	.	.	.	.	Atlas-INDEL
TUBA8	51807	hgsc.bcm.edu	hg19	22	18609172	18609172	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUBA8	NM_018943	exon4	c.426delT	p.G142fs	.	.	169.0	11.0	134.0	0.0	.	36	.	.	Atlas-INDEL
ITGB6	3694	hgsc.bcm.edu	hg19	2	160958277	160958277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGB6	NM_000888	exon15	c.2338delC	p.Q780fs	.	.	162.0	11.0	135.0	0.0	.	68	.	.	Atlas-INDEL
FHAD1	114827	hgsc.bcm.edu	hg19	1	15615974	15615974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	FHAD1	NM_052929	exon4	c.379delG	p.A127fs	.	.	158.0	11.0	162.0	0.0	.	78	.	.	Atlas-INDEL
CCDC13	152206	hgsc.bcm.edu	hg19	3	42754657	42754657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC13	NM_144719	exon14	c.1871delC	p.T624fs	.	.	170.0	11.0	124.0	0.0	.	71	.	.	Atlas-INDEL
FARP2	9855	hgsc.bcm.edu	hg19	2	242373660	242373660	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FARP2	NM_014808	exon10	c.954delC	p.T318fs	.	.	170.0	12.0	119.0	0.0	.	92	.	.	Atlas-INDEL
IFI44L	10964	hgsc.bcm.edu	hg19	1	79101136	79101136	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IFI44L	NM_006820	exon5	c.837delT	p.I279fs	.	.	132.0	10.0	103.0	0.0	.	93	.	.	Atlas-INDEL
MAGI3	260425	hgsc.bcm.edu	hg19	1	114162410	114162410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAGI3	NM_152900	exon8	c.1128delG	p.R376fs	.	.	213.0	14.0	184.0	0.0	.	181	.	.	Atlas-INDEL
RAD51D	5892	hgsc.bcm.edu	hg19	17	33434027	33434027	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAD51D	NM_001142571	exon5	c.521delC	p.T174fs	.	.	122.0	10.0	103.0	0.0	.	53	.	.	Atlas-INDEL
SULF1	23213	hgsc.bcm.edu	hg19	8	70550813	70550813	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SULF1	NM_001128205	exon20	c.2360delA	p.N787fs	.	.	177.0	11.0	120.0	0.0	.	153	.	.	Atlas-INDEL
TTC13	79573	hgsc.bcm.edu	hg19	1	231044702	231044702	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC13	NM_024525	exon21	c.2375delT	p.I792fs	.	.	214.0	13.0	145.0	0.0	.	74	.	.	Atlas-INDEL
MACROD2	140733	hgsc.bcm.edu	hg19	20	13976431	13976431	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MACROD2	NM_080676	exon1	c.21delG	p.K7fs	.	.	160.0	10.0	130.0	0.0	.	34	.	.	Atlas-INDEL
DFNB59	494513	hgsc.bcm.edu	hg19	2	179325894	179325894	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DFNB59	NM_001042702	exon7	c.951delC	p.F317fs	.	.	152.0	10.0	114.0	0.0	.	37	.	.	Atlas-INDEL
AGRN	375790	hgsc.bcm.edu	hg19	1	987127	987127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGRN	NM_198576	exon33	c.5582delC	p.A1861fs	.	.	152.0	12.0	232.0	0.0	.	110	.	.	Atlas-INDEL
SPPL3	121665	hgsc.bcm.edu	hg19	12	121222293	121222293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_139015	exon4	c.295delA	p.T99fs	.	.	165.0	12.0	106.0	0.0	.	.	.	.	Atlas-INDEL
OSBPL8	114882	hgsc.bcm.edu	hg19	12	76749732	76749732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OSBPL8	NM_020841	exon24	c.2608delG	p.D870fs	.	.	147.0	12.0	119.0	0.0	.	86	.	.	Atlas-INDEL
SEPT2	4735	hgsc.bcm.edu	hg19	2	242275390	242275390	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEPT2	NM_006155	exon5	c.218-1A>-	.	.	.	153.0	14.0	86.0	0.0	.	33	.	.	Atlas-INDEL
CXorf40A	91966	hgsc.bcm.edu	hg19	X	148627384	148627384	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CXorf40A	NM_178124	exon4	c.207delG	p.Q69fs	.	.	201.0	16.0	163.0	0.0	.	15	.	.	Atlas-INDEL
TMEM108	66000	hgsc.bcm.edu	hg19	3	133099911	133099911	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM108	NM_023943	exon4	c.1355delA	p.E452fs	.	.	226.0	14.0	210.0	0.0	.	67	.	.	Atlas-INDEL
ADRM1	11047	hgsc.bcm.edu	hg19	20	60882434	60882434	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADRM1	NM_175573	exon6	c.548delT	p.L183fs	.	.	159.0	10.0	115.0	0.0	.	28	.	.	Atlas-INDEL
GARNL3	84253	hgsc.bcm.edu	hg19	9	130116628	130116628	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GARNL3	NM_032293	exon19	c.1697delA	p.E566fs	.	.	155.0	10.0	126.0	0.0	.	83	.	.	Atlas-INDEL
ZNF385C	201181	hgsc.bcm.edu	hg19	17	40189831	40189831	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF385C	NM_001242704	exon2	c.87delG	p.P29fs	.	.	154.0	10.0	151.0	0.0	.	7	.	.	Atlas-INDEL
PDHX	8050	hgsc.bcm.edu	hg19	11	34953022	34953022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDHX	NM_003477	exon2	c.231delG	p.L77fs	.	.	211.0	14.0	184.0	0.0	.	40	.	.	Atlas-INDEL
SVIL	6840	hgsc.bcm.edu	hg19	10	29822101	29822101	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SVIL	NM_021738	exon8	c.1196delA	p.Q399fs	.	.	197.0	13.0	168.0	0.0	.	226	.	.	Atlas-INDEL
KCNQ2	3785	hgsc.bcm.edu	hg19	20	62059777	62059777	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	KCNQ2,rectum,carcinoma,0,1	KCNQ2	NM_172106	exon10	c.1161delG	p.P387fs	.	.	195.0	13.0	143.0	0.0	.	201	.	.	Atlas-INDEL
PPAT	5471	hgsc.bcm.edu	hg19	4	57272752	57272752	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPAT	NM_002703	exon3	c.312delT	p.N104fs	.	.	164.0	12.0	136.0	0.0	.	41	.	.	Atlas-INDEL
FHOD3	80206	hgsc.bcm.edu	hg19	18	34335198	34335198	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FHOD3	NM_025135	exon22	c.3823delG	p.E1275fs	.	.	154.0	10.0	133.0	0.0	.	210	.	.	Atlas-INDEL
USP47	55031	hgsc.bcm.edu	hg19	11	11977603	11977603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	USP47	NM_017944	exon27	c.3744delG	p.M1248fs	.	.	150.0	11.0	137.0	0.0	.	91	.	.	Atlas-INDEL
RARS	5917	hgsc.bcm.edu	hg19	5	167937675	167937675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RARS	NM_002887	exon12	c.1435delG	p.E479fs	.	.	149.0	10.0	144.0	0.0	.	58	.	.	Atlas-INDEL
EPHA7	2045	hgsc.bcm.edu	hg19	6	94120235	94120235	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EPHA7	NM_004440	exon3	c.817delG	p.G273fs	.	.	166.0	13.0	142.0	0.0	.	251	.	.	Atlas-INDEL
SEC14L1	6397	hgsc.bcm.edu	hg19	17	75192380	75192380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC14L1	NM_001204408	exon10	c.805delA	p.T269fs	.	.	179.0	11.0	101.0	0.0	.	81	.	.	Atlas-INDEL
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112926912	112926912	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YTHDC2	NM_022828	exon27	c.3999delA	p.V1333fs	.	.	162.0	11.0	127.0	0.0	.	118	.	.	Atlas-INDEL
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127514330	127514330	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	SLC12A2,NS,carcinoma,0,1	SLC12A2	NM_001046	exon22	c.3048delG	p.Q1016fs	.	.	212.0	13.0	158.0	0.0	.	119	.	.	Atlas-INDEL
HCFC2	29915	hgsc.bcm.edu	hg19	12	104490206	104490206	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HCFC2	NM_013320	exon12	c.1734delG	p.P578fs	.	.	155.0	10.0	173.0	0.0	.	94	.	.	Atlas-INDEL
ZMPSTE24	10269	hgsc.bcm.edu	hg19	1	40751681	40751681	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ZMPSTE24,NS,carcinoma,0,1	ZMPSTE24	NM_005857	exon8	c.1038delC	p.V346fs	.	.	260.0	16.0	210.0	0.0	.	50	.	.	Atlas-INDEL
WIPF1	7456	hgsc.bcm.edu	hg19	2	175436765	175436765	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WIPF1	NM_003387	exon5	c.769delA	p.S257fs	.	.	194.0	12.0	135.0	0.0	.	88	.	.	Atlas-INDEL
MAGEE1	57692	hgsc.bcm.edu	hg19	X	75650522	75650522	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAGEE1	NM_020932	exon1	c.2198delC	p.S733X	.	.	164.0	10.0	124.0	0.0	.	236	.	.	Atlas-INDEL
ITGA9	3680	hgsc.bcm.edu	hg19	3	37845344	37845344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ITGA9	NM_002207	exon27	c.2919delG	p.E973fs	.	.	233.0	17.0	187.0	0.0	.	98	.	.	Atlas-INDEL
TM9SF2	9375	hgsc.bcm.edu	hg19	13	100191778	100191778	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TM9SF2	NM_004800	exon7	c.794delT	p.I265fs	.	.	131.0	12.0	152.0	0.0	.	52	.	.	Atlas-INDEL
XYLT2	64132	hgsc.bcm.edu	hg19	17	48435819	48435819	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	XYLT2	NM_022167	exon10	c.2192delT	p.L731fs	.	.	151.0	10.0	139.0	0.0	.	51	.	.	Atlas-INDEL
TMEM171	134285	hgsc.bcm.edu	hg19	5	72424240	72424240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM171	NM_001161342	exon3	c.663delA	p.P221fs	.	.	220.0	15.0	196.0	0.0	.	41	.	.	Atlas-INDEL
GLS2	27165	hgsc.bcm.edu	hg19	12	56867277	56867277	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GLS2	NM_013267	exon13	c.1327delA	p.N443fs	.	.	115.0	10.0	70.0	0.0	.	42	.	.	Atlas-INDEL
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61304238	61304238	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIAA1841	NM_032506	exon6	c.614delT	p.I205fs	.	.	183.0	11.0	145.0	0.0	.	95	.	.	Atlas-INDEL
CDC42EP4	23580	hgsc.bcm.edu	hg19	17	71281984	71281984	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDC42EP4	NM_012121	exon2	c.657delT	p.G219fs	.	.	173.0	11.0	177.0	0.0	.	19	.	.	Atlas-INDEL
MGA	23269	hgsc.bcm.edu	hg19	15	42057143	42057143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MGA	NM_001164273	exon23	c.7803delA	p.Q2601fs	.	.	194.0	12.0	146.0	0.0	.	264	.	.	Atlas-INDEL
NOS3	4846	hgsc.bcm.edu	hg19	7	150693569	150693569	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOS3	NM_001160111	exon3	c.347delG	p.G116fs	.	.	257.0	17.0	148.0	0.0	.	131	.	.	Atlas-INDEL
AGFG1	3267	hgsc.bcm.edu	hg19	2	228389615	228389615	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGFG1	NM_001135187	exon5	c.677delA	p.H226fs	.	.	214.0	13.0	175.0	0.0	.	80	.	.	Atlas-INDEL
ZNF354C	30832	hgsc.bcm.edu	hg19	5	178507066	178507066	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354C	NM_014594	exon5	c.1632delA	p.R544fs	.	.	183.0	12.0	139.0	0.0	.	77	.	.	Atlas-INDEL
ABCB9	23457	hgsc.bcm.edu	hg19	12	123416813	123416813	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCB9	NM_019625	exon11	c.1967delC	p.A656fs	.	.	141.0	10.0	120.0	0.0	.	50	.	.	Atlas-INDEL
SFXN2	118980	hgsc.bcm.edu	hg19	10	104486829	104486829	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SFXN2	NM_178858	exon3	c.246delT	p.T82fs	.	.	161.0	11.0	210.0	0.0	.	40	.	.	Atlas-INDEL
RNF144A	9781	hgsc.bcm.edu	hg19	2	7137130	7137130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNF144A	NM_014746	exon3	c.72delT	p.L24fs	.	.	187.0	12.0	143.0	0.0	.	38	.	.	Atlas-INDEL
MUT	4594	hgsc.bcm.edu	hg19	6	49416619	49416619	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUT	NM_000255	exon7	c.1355delT	p.M452fs	.	.	162.0	11.0	116.0	0.0	.	70	.	.	Atlas-INDEL
VPS4B	9525	hgsc.bcm.edu	hg19	18	61067829	61067829	+	Frame_Shift_Del	DEL	A	A	-	rs369884834		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS4B	NM_004869	exon6	c.593delC	p.S198X	.	.	150.0	10.0	151.0	0.0	.	33	.	.	Atlas-INDEL
MFSD9	84804	hgsc.bcm.edu	hg19	2	103334977	103334978	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MFSD9	NM_032718	exon6	c.1327_1328insC	p.S443fs	.	.	133.0	23.0	106.0	0.0	.	56	.	.	Atlas-Indel,Pindel
RAD9A	5883	hgsc.bcm.edu	hg19	11	67164988	67164988	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAD9A	NM_004584	exon11	c.1133delG	p.G378fs	.	.	257.0	16.0	146.0	0.0	.	15	.	.	Atlas-INDEL
COBL	23242	hgsc.bcm.edu	hg19	7	51287562	51287562	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	COBL	NM_015198	exon2	c.122delA	p.H41fs	.	.	169.0	16.0	146.0	0.0	.	167	.	.	Atlas-INDEL
GPR114	221188	hgsc.bcm.edu	hg19	16	57597883	57597883	+	Frame_Shift_Del	DEL	T	T	-	rs35837636		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPR114	NM_153837	exon5	c.420delC	p.H140fs	.	.	173.0	13.0	130.0	0.0	.	52	.	.	Atlas-INDEL
NUP210L	91181	hgsc.bcm.edu	hg19	1	154031143	154031143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NUP210L	NM_001159484	exon21	c.2878delA	p.T960fs	.	.	149.0	10.0	82.0	0.0	.	181	.	.	Atlas-INDEL
BRWD3	254065	hgsc.bcm.edu	hg19	X	79938011	79938011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BRWD3	NM_153252	exon38	c.4351delC	p.R1451fs	.	.	149.0	10.0	163.0	0.0	.	251	.	.	Atlas-INDEL
ATF3	467	hgsc.bcm.edu	hg19	1	212788594	212788594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATF3	NM_001030287	exon2	c.230delC	p.T77fs	.	.	164.0	11.0	78.0	0.0	.	22	.	.	Atlas-INDEL
TUBGCP4	27229	hgsc.bcm.edu	hg19	15	43675520	43675520	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TUBGCP4	NM_014444	exon7	c.540delT	p.H180fs	.	.	150.0	10.0	159.0	0.0	.	48	.	.	Atlas-INDEL
ABCC8	6833	hgsc.bcm.edu	hg19	11	17449417	17449417	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC8	NM_000352	exon15	c.2114delG	p.R705fs	.	.	210.0	13.0	176.0	0.0	.	170	.	.	Atlas-INDEL
PHF21A	51317	hgsc.bcm.edu	hg19	11	45957241	45957241	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHF21A	NM_001101802	exon17	c.1732delC	p.Q578fs	.	.	145.0	10.0	161.0	0.0	.	107	.	.	Atlas-INDEL
ZNF805	390980	hgsc.bcm.edu	hg19	19	57766049	57766049	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF805	NM_001023563	exon4	c.1861delA	p.T621fs	.	.	205.0	13.0	129.0	0.0	.	30	.	.	Atlas-INDEL
DST	667	hgsc.bcm.edu	hg19	6	56336022	56336022	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DST	NM_015548	exon76	c.14335delT	p.Y4779fs	.	.	158.0	11.0	142.0	0.0	.	1427	.	.	Atlas-INDEL
KLRC4-KLRK1	0	hgsc.bcm.edu	hg19	12	10539504	10539504	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001199805	exon8	c.147delT	p.N49fs	.	.	183.0	11.0	121.0	0.0	.	.	.	.	Atlas-INDEL
NBPF16	728936	hgsc.bcm.edu	hg19	1	148744584	148744584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NBPF16	NM_001102663	exon6	c.730delT	p.S244fs	.	.	160.0	11.0	74.0	0.0	.	7	.	.	Atlas-INDEL
ANGPT1	284	hgsc.bcm.edu	hg19	8	108348381	108348381	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANGPT1	NM_001199859	exon3	c.573delC	p.N191fs	.	.	175.0	12.0	107.0	0.0	.	111	.	.	Atlas-INDEL
SYT3	84258	hgsc.bcm.edu	hg19	19	51133356	51133356	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYT3	NM_032298	exon3	c.748delC	p.P250fs	.	.	145.0	10.0	106.0	0.0	.	85	.	.	Atlas-INDEL
PNMA5	114824	hgsc.bcm.edu	hg19	X	152159005	152159005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNMA5	NM_001103150	exon2	c.1139delA	p.Q380fs	.	.	144.0	10.0	93.0	0.0	.	63	.	.	Atlas-INDEL
TIFAB	497189	hgsc.bcm.edu	hg19	5	134785335	134785335	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TIFAB	NM_001099221	exon2	c.296delT	p.L99fs	.	.	168.0	11.0	129.0	0.0	.	23	.	.	Atlas-INDEL
CAT	847	hgsc.bcm.edu	hg19	11	34470817	34470817	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CAT	NM_001752	exon2	c.144delG	p.G48fs	.	.	164.0	10.0	106.0	0.0	.	42	.	.	Atlas-INDEL
PPAP2B	8613	hgsc.bcm.edu	hg19	1	56990119	56990119	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPAP2B	NM_003713	exon3	c.406delG	p.G136fs	.	.	151.0	10.0	109.0	0.0	.	30	.	.	Atlas-INDEL
PLCB3	5331	hgsc.bcm.edu	hg19	11	64031017	64031017	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLCB3	NM_000932	exon20	c.2402delA	p.E801fs	.	.	169.0	11.0	79.0	0.0	.	103	.	.	Atlas-INDEL
SCAF1	58506	hgsc.bcm.edu	hg19	19	50156035	50156035	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCAF1	NM_021228	exon7	c.2388delG	p.R796fs	.	.	159.0	13.0	113.0	0.0	.	78	.	.	Atlas-INDEL
SYT11	23208	hgsc.bcm.edu	hg19	1	155851197	155851197	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SYT11	NM_152280	exon4	c.1193delT	p.L398fs	.	.	258.0	17.0	132.0	0.0	.	55	.	.	Atlas-INDEL
HRG	3273	hgsc.bcm.edu	hg19	3	186392941	186392941	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	HRG,rectum,carcinoma,+1,1	HRG	NM_000412	exon6	c.702delG	p.P234fs	.	.	249.0	17.0	164.0	0.0	.	81	.	.	Atlas-INDEL
TBC1D23	55773	hgsc.bcm.edu	hg19	3	100002490	100002490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TBC1D23	NM_018309	exon4	c.310delC	p.L104fs	.	.	139.0	11.0	122.0	0.0	.	133	.	.	Atlas-INDEL
MYO3A	53904	hgsc.bcm.edu	hg19	10	26359089	26359089	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO3A	NM_017433	exon13	c.1219delA	p.I407fs	.	.	174.0	11.0	149.0	0.0	.	371	.	.	Atlas-INDEL
TMEM139	135932	hgsc.bcm.edu	hg19	7	142983605	142983605	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM139	NM_001242773	exon4	c.333delA	p.P111fs	.	.	163.0	11.0	101.0	0.0	.	18	.	.	Atlas-INDEL
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39329068	39329068	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HNRNPL	NM_001533	exon10	c.1527delG	p.P509fs	.	.	150.0	10.0	139.0	0.0	.	67	.	.	Atlas-INDEL
CD82	3732	hgsc.bcm.edu	hg19	11	44639810	44639810	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD82	NM_002231	exon8	c.536delA	p.K179fs	.	.	163.0	10.0	129.0	0.0	.	27	.	.	Atlas-INDEL
SP100	6672	hgsc.bcm.edu	hg19	2	231339124	231339124	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SP100	NM_001206701	exon17	c.1561delG	p.E521fs	.	.	229.0	18.0	166.0	0.0	.	167	.	.	Atlas-INDEL
ARHGEF35	445328	hgsc.bcm.edu	hg19	7	143884040	143884040	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARHGEF35	NM_001003702	exon2	c.1438delC	p.L480fs	.	.	201.0	14.0	103.0	0.0	.	11	.	.	Atlas-INDEL
AGTPBP1	23287	hgsc.bcm.edu	hg19	9	88204546	88204546	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	AGTPBP1,NS,carcinoma,0,1	AGTPBP1	NM_015239	exon20	c.2500delC	p.R834fs	.	.	142.0	10.0	93.0	0.0	.	128	.	.	Atlas-INDEL
PHGDH	26227	hgsc.bcm.edu	hg19	1	120266001	120266001	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PHGDH	NM_006623	exon3	c.292delA	p.T98fs	.	.	239.0	16.0	209.0	0.0	.	51	.	.	Atlas-INDEL
FILIP1	27145	hgsc.bcm.edu	hg19	6	76124421	76124421	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FILIP1	NM_015687	exon2	c.269delA	p.E90fs	.	.	143.0	10.0	112.0	0.0	.	173	.	.	Atlas-INDEL
PCSK9	255738	hgsc.bcm.edu	hg19	1	55523861	55523861	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCSK9	NM_174936	exon8	c.1332delG	p.L444fs	.	.	171.0	12.0	168.0	0.0	.	76	.	.	Atlas-INDEL
NRG3	10718	hgsc.bcm.edu	hg19	10	84711320	84711320	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NRG3	NM_001010848	exon5	c.1149delC	p.F383fs	.	.	212.0	13.0	232.0	0.0	.	301	.	.	Atlas-INDEL
TRABD	80305	hgsc.bcm.edu	hg19	22	50632890	50632890	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TRABD	NM_025204	exon4	c.233delT	p.V78fs	.	.	161.0	10.0	184.0	0.0	.	21	.	.	Atlas-INDEL
MGA	23269	hgsc.bcm.edu	hg19	15	41961559	41961559	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MGA	NM_001080541	exon2	c.466delG	p.V156fs	.	.	203.0	15.0	171.0	0.0	.	264	.	.	Atlas-INDEL
C2CD5	9847	hgsc.bcm.edu	hg19	12	22666279	22666279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_014802	exon9	c.988delC	p.P330fs	.	.	142.0	10.0	115.0	0.0	.	.	.	.	Atlas-INDEL
RYR1	6261	hgsc.bcm.edu	hg19	19	39025415	39025415	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	RYR1	NM_000540	exon79	c.11314delC	p.R3772fs	.	.	194.0	12.0	132.0	0.0	.	708	.	.	Atlas-INDEL
PPIL1	51645	hgsc.bcm.edu	hg19	6	36823778	36823778	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PPIL1,caecum,carcinoma,0,1	PPIL1	NM_016059	exon4	c.313delC	p.P105fs	.	.	161.0	11.0	132.0	0.0	.	6	.	.	Atlas-INDEL
CYTH4	27128	hgsc.bcm.edu	hg19	22	37707049	37707049	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYTH4	NM_013385	exon10	c.828delG	p.W276X	.	.	178.0	13.0	140.0	0.0	.	51	.	.	Atlas-INDEL
POLQ	10721	hgsc.bcm.edu	hg19	3	121238748	121238748	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	POLQ	NM_199420	exon9	c.1439delG	p.R480fs	.	.	169.0	11.0	116.0	0.0	.	273	.	.	Atlas-INDEL
LINGO2	158038	hgsc.bcm.edu	hg19	9	27950495	27950495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LINGO2	NM_152570	exon7	c.176delC	p.T59fs	.	.	232.0	15.0	352.0	0.0	.	244	.	.	Atlas-INDEL
EXOC7	23265	hgsc.bcm.edu	hg19	17	74099763	74099763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EXOC7	NM_001145298	exon1	c.12delA	p.P4fs	.	.	170.0	12.0	104.0	0.0	.	47	.	.	Atlas-INDEL
ASTE1	28990	hgsc.bcm.edu	hg19	3	130743653	130743653	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ASTE1	NM_014065	exon3	c.499delG	p.D167fs	.	.	172.0	11.0	121.0	0.0	.	67	.	.	Atlas-INDEL
OTOF	9381	hgsc.bcm.edu	hg19	2	26724640	26724640	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OTOF	NM_194248	exon8	c.748delC	p.R250fs	.	.	195.0	12.0	144.0	0.0	.	524	.	.	Atlas-INDEL
RRH	10692	hgsc.bcm.edu	hg19	4	110754368	110754368	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RRH	NM_006583	exon2	c.179delC	p.T60fs	.	.	154.0	10.0	190.0	0.0	.	24	.	.	Atlas-INDEL
ANKRD17	26057	hgsc.bcm.edu	hg19	4	73985933	73985933	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKRD17	NM_032217	exon21	c.3972delA	p.L1324fs	.	.	162.0	10.0	145.0	0.0	.	214	.	.	Atlas-INDEL
FASTKD3	79072	hgsc.bcm.edu	hg19	5	7867769	7867769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,2	FASTKD3	NM_024091	exon2	c.429delG	p.K143fs	.	.	226.0	14.0	198.0	0.0	.	88	.	.	Atlas-INDEL
HCN1	348980	hgsc.bcm.edu	hg19	5	45262631	45262631	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HCN1	NM_021072	exon8	c.2066delA	p.Q689fs	.	.	182.0	11.0	158.0	0.0	.	298	.	.	Atlas-INDEL
YJEFN3	374887	hgsc.bcm.edu	hg19	19	19645920	19645920	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YJEFN3	NM_198537	exon4	c.395delT	p.V132fs	.	.	146.0	13.0	102.0	0.0	.	10	.	.	Atlas-INDEL
NR4A2	4929	hgsc.bcm.edu	hg19	2	157184439	157184439	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NR4A2	NM_006186	exon5	c.1083delG	p.P361fs	.	.	200.0	12.0	138.0	0.0	.	82	.	.	Atlas-INDEL
SP2	6668	hgsc.bcm.edu	hg19	17	45994350	45994350	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SP2	NM_003110	exon3	c.912delG	p.V304fs	.	.	166.0	10.0	124.0	0.0	.	38	.	.	Atlas-INDEL
ATP1B4	23439	hgsc.bcm.edu	hg19	X	119509268	119509268	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATP1B4	NM_001142447	exon5	c.603delT	p.C201fs	.	.	170.0	13.0	138.0	0.0	.	61	.	.	Atlas-INDEL
PCNX	22990	hgsc.bcm.edu	hg19	14	71522272	71522272	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PCNX	NM_014982	exon25	c.4628delG	p.R1543fs	.	.	192.0	12.0	171.0	0.0	.	198	.	.	Atlas-INDEL
COG2	22796	hgsc.bcm.edu	hg19	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COG2	NM_007357	exon5	c.430delG	p.E144fs	.	.	153.0	12.0	77.0	0.0	.	61	.	.	Atlas-INDEL
RBFOX1	54715	hgsc.bcm.edu	hg19	16	7680656	7680656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	RBFOX1_ENST00000550418,colon,carcinoma,0,3	RBFOX1	NM_145891	exon8	c.787delG	p.A263fs	.	.	213.0	15.0	154.0	0.0	.	341	.	.	Atlas-INDEL
ZNF17	7565	hgsc.bcm.edu	hg19	19	57932806	57932806	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF17	NM_006959	exon3	c.1945delC	p.Q649fs	.	.	177.0	11.0	120.0	0.0	.	49	.	.	Atlas-INDEL
KCNU1	157855	hgsc.bcm.edu	hg19	8	36793121	36793121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KCNU1	NM_001031836	exon27	c.3132delT	p.Y1044X	.	.	180.0	15.0	132.0	0.0	.	359	.	.	Atlas-INDEL
LOC100132707	0	hgsc.bcm.edu	hg19	7	154720408	154720408	+	RNA	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	213.0	13.0	157.0	0.0	.	.	.	.	Atlas-INDEL
MTRR	4552	hgsc.bcm.edu	hg19	5	7900115	7900115	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTRR	NM_024010	exon15	c.2121delG	p.M707fs	.	.	132.0	10.0	150.0	0.0	.	74	.	.	Atlas-INDEL
MIR147B	100126311	hgsc.bcm.edu	hg19	15	45725320	45725320	+	RNA	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	.	.	.	.	.	.	203.0	13.0	186.0	0.0	.	.	.	.	Atlas-INDEL
EZH2	2146	hgsc.bcm.edu	hg19	7	148515025	148515025	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	EZH2	NM_004456	exon10	c.1185delA	p.G395fs	.	.	336.0	23.0	190.0	0.0	.	823	.	.	Atlas-INDEL
TNFRSF14	8764	hgsc.bcm.edu	hg19	1	2492097	2492097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNFRSF14	NM_003820	exon5	c.494delG	p.C165fs	.	.	154.0	11.0	146.0	0.0	.	89	.	.	Atlas-INDEL
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42162009	42162009	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	L3MBTL1	NM_032107	exon13	c.1397delA	p.H466fs	.	.	148.0	10.0	97.0	0.0	.	105	.	.	Atlas-INDEL
PA2G4	5036	hgsc.bcm.edu	hg19	12	56498590	56498590	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PA2G4	NM_006191	exon1	c.68delT	p.M23fs	.	.	164.0	11.0	166.0	0.0	.	24	.	.	Atlas-INDEL
HELZ2	85441	hgsc.bcm.edu	hg19	20	62193204	62193204	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001037335	exon12	c.6664delT	p.S2222fs	.	.	139.0	11.0	109.0	0.0	.	.	.	.	Atlas-INDEL
DDX20	11218	hgsc.bcm.edu	hg19	1	112309341	112309341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DDX20	NM_007204	exon11	c.2294delG	p.S765fs	.	.	198.0	12.0	140.0	0.0	.	50	.	.	Atlas-INDEL
ZCCHC24	219654	hgsc.bcm.edu	hg19	10	81154153	81154153	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZCCHC24	NM_153367	exon3	c.492delG	p.K164fs	.	.	166.0	11.0	196.0	0.0	.	22	.	.	Atlas-INDEL
HEBP1	50865	hgsc.bcm.edu	hg19	12	13142225	13142225	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HEBP1	NM_015987	exon2	c.204delC	p.G68fs	.	.	275.0	17.0	199.0	0.0	.	16	.	.	Atlas-INDEL
TEK	7010	hgsc.bcm.edu	hg19	9	27157926	27157926	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TEK_ENST00000380036,caecum,carcinoma,0,1	TEK	NM_000459	exon2	c.149delG	p.R50fs	.	.	133.0	10.0	184.0	0.0	.	250	.	.	Atlas-INDEL
AKT1	207	hgsc.bcm.edu	hg19	14	105240253	105240253	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AKT1	NM_001014432	exon9	c.699delC	p.G233fs	.	.	173.0	11.0	168.0	0.0	.	379	.	.	Atlas-INDEL
RAPGEF2	9693	hgsc.bcm.edu	hg19	4	160273871	160273871	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPGEF2	NM_014247	exon21	c.3416delA	p.N1139fs	.	.	179.0	12.0	218.0	0.0	.	171	.	.	Atlas-INDEL
CHEK1	1111	hgsc.bcm.edu	hg19	11	125505404	125505404	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	CHEK1	NM_001114122	exon7	c.693delG	p.W231X	.	.	129.0	10.0	99.0	0.0	.	44	.	.	Atlas-INDEL
ANO1	55107	hgsc.bcm.edu	hg19	11	70017033	70017033	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANO1	NM_018043	exon22	c.2237delT	p.F746fs	.	.	244.0	15.0	135.0	0.0	.	156	.	.	Atlas-INDEL
PPM1F	9647	hgsc.bcm.edu	hg19	22	22277539	22277539	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PPM1F	NM_014634	exon8	c.1292delA	p.Q431fs	.	.	182.0	11.0	128.0	0.0	.	34	.	.	Atlas-INDEL
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24087705	24087705	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ATAD2B	NM_017552	exon11	c.1279delG	p.E427fs	.	.	163.0	13.0	107.0	0.0	.	110	.	.	Atlas-INDEL
PTTG1	9232	hgsc.bcm.edu	hg19	5	159854837	159854837	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTTG1	NM_004219	exon5	c.485delG	p.G162fs	.	.	164.0	10.0	131.0	0.0	.	15	.	.	Atlas-INDEL
BFSP2	8419	hgsc.bcm.edu	hg19	3	133119111	133119111	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BFSP2	NM_003571	exon1	c.183delA	p.A61fs	.	.	153.0	11.0	188.0	0.0	.	48	.	.	Atlas-INDEL
COL11A2	1302	hgsc.bcm.edu	hg19	6	33152022	33152022	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL11A2	NM_080680	exon8	c.1020delT	p.P340fs	.	.	102.0	11.0	72.0	0.0	.	124	.	.	Atlas-INDEL
SIL1	64374	hgsc.bcm.edu	hg19	5	138286953	138286953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SIL1	NM_022464	exon9	c.937delC	p.L313fs	.	.	183.0	11.0	144.0	0.0	.	31	.	.	Atlas-INDEL
RAPH1	65059	hgsc.bcm.edu	hg19	2	204305064	204305064	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RAPH1	NM_213589	exon14	c.2850delT	p.P950fs	.	.	152.0	10.0	98.0	0.0	.	118	.	.	Atlas-INDEL
NOP56	10528	hgsc.bcm.edu	hg19	20	2634016	2634016	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NOP56	NM_006392	exon3	c.184delG	p.E62fs	.	.	250.0	16.0	201.0	0.0	.	73	.	.	Atlas-INDEL
CFHR5	81494	hgsc.bcm.edu	hg19	1	196953169	196953169	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CFHR5,right_upper_lobe,carcinoma,0,1	CFHR5	NM_030787	exon3	c.331delC	p.Q111fs	.	.	194.0	12.0	103.0	0.0	.	150	.	.	Atlas-INDEL
FAM170A	340069	hgsc.bcm.edu	hg19	5	118969957	118969957	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM170A	NM_182761	exon3	c.513delT	p.T171fs	.	.	145.0	10.0	132.0	0.0	.	47	.	.	Atlas-INDEL
ABCC6	368	hgsc.bcm.edu	hg19	16	16292011	16292011	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCC6	NM_001171	exon10	c.1206delG	p.K402fs	.	.	155.0	12.0	149.0	0.0	.	110	.	.	Atlas-INDEL
ZNF354B	117608	hgsc.bcm.edu	hg19	5	178311121	178311121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354B	NM_058230	exon5	c.1667delG	p.G556fs	.	.	127.0	31.0	107.0	0.0	.	67	.	.	Atlas-Indel,Pindel
ADAMTS14	140766	hgsc.bcm.edu	hg19	10	72496514	72496514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAMTS14	NM_139155	exon10	c.1572delG	p.G524fs	.	.	147.0	10.0	152.0	0.0	.	148	.	.	Atlas-INDEL
COL7A1	1294	hgsc.bcm.edu	hg19	3	48610625	48610625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	COL7A1	NM_000094	exon84	c.6697delG	p.G2233fs	.	.	129.0	10.0	83.0	0.0	.	320	.	.	Atlas-INDEL
ARID3C	138715	hgsc.bcm.edu	hg19	9	34625744	34625744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARID3C	NM_001017363	exon2	c.387delG	p.K129fs	.	.	163.0	10.0	144.0	0.0	.	33	.	.	Atlas-INDEL
BIRC2	329	hgsc.bcm.edu	hg19	11	102239232	102239232	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BIRC2	NM_001256163	exon6	c.1318delG	p.E440fs	.	.	150.0	10.0	97.0	0.0	.	51	.	.	Atlas-INDEL
WDR72	256764	hgsc.bcm.edu	hg19	15	54004983	54004983	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR72	NM_182758	exon7	c.698delC	p.S233fs	.	.	229.0	14.0	203.0	0.0	.	177	.	.	Atlas-INDEL
FARSA	2193	hgsc.bcm.edu	hg19	19	13033615	13033615	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FARSA	NM_004461	exon13	c.1475delT	p.L492fs	.	.	169.0	11.0	113.0	0.0	.	46	.	.	Atlas-INDEL
SCN10A	6336	hgsc.bcm.edu	hg19	3	38793887	38793887	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SCN10A	NM_006514	exon11	c.1579delC	p.P527fs	.	.	151.0	10.0	121.0	0.0	.	359	.	.	Atlas-INDEL
SMARCA5	8467	hgsc.bcm.edu	hg19	4	144442631	144442631	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SMARCA5	NM_003601	exon3	c.301delC	p.L101fs	.	.	106.0	12.0	125.0	0.0	.	73	.	.	Atlas-INDEL
ZNF416	55659	hgsc.bcm.edu	hg19	19	58084579	58084579	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF416	NM_017879	exon4	c.694delC	p.H232fs	.	.	199.0	13.0	117.0	0.0	.	50	.	.	Atlas-INDEL
NIM1	0	hgsc.bcm.edu	hg19	5	43245927	43245927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_153361	exon2	c.49delG	p.A17fs	.	.	170.0	11.0	170.0	0.0	.	.	.	.	Atlas-INDEL
MYO10	4651	hgsc.bcm.edu	hg19	5	16763789	16763789	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO10	NM_012334	exon13	c.1403delC	p.S468fs	.	.	232.0	14.0	211.0	0.0	.	198	.	.	Atlas-INDEL
LRRC40	55631	hgsc.bcm.edu	hg19	1	70618181	70618181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRRC40	NM_017768	exon12	c.1375delA	p.N459fs	.	.	237.0	16.0	189.0	0.0	.	66	.	.	Atlas-INDEL
SPATA22	84690	hgsc.bcm.edu	hg19	17	3352342	3352342	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SPATA22	NM_032598	exon6	c.432delT	p.N144fs	.	.	138.0	11.0	158.0	0.0	.	49	.	.	Atlas-INDEL
MAMDC4	158056	hgsc.bcm.edu	hg19	9	139753286	139753286	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAMDC4	NM_206920	exon23	c.2936delT	p.M979fs	.	.	110.0	10.0	112.0	0.0	.	117	.	.	Atlas-INDEL
MYOM1	8736	hgsc.bcm.edu	hg19	18	3129514	3129514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYOM1	NM_003803	exon18	c.2511delA	p.G837fs	.	.	233.0	15.0	182.0	0.0	.	192	.	.	Atlas-INDEL
LRP4	4038	hgsc.bcm.edu	hg19	11	46903431	46903431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LRP4	NM_002334	exon20	c.2637delT	p.G879fs	.	.	157.0	10.0	129.0	0.0	.	160	.	.	Atlas-INDEL
SNAP91	9892	hgsc.bcm.edu	hg19	6	84368767	84368767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SNAP91	NM_001242794	exon6	c.498delG	p.K166fs	.	.	129.0	10.0	118.0	0.0	.	199	.	.	Atlas-INDEL
NAALAD2	10003	hgsc.bcm.edu	hg19	11	89911108	89911108	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NAALAD2	NM_005467	exon16	c.1680delT	p.F560fs	.	.	243.0	18.0	162.0	0.0	.	113	.	.	Atlas-INDEL
ACAN	176	hgsc.bcm.edu	hg19	15	89398305	89398305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACAN	NM_001135	exon12	c.2488delT	p.S830fs	.	.	184.0	12.0	129.0	0.0	.	220	.	.	Atlas-INDEL
CD55	1604	hgsc.bcm.edu	hg19	1	207510725	207510725	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CD55	NM_001114752	exon8	c.1030delA	p.T344fs	.	.	261.0	17.0	161.0	0.0	.	55	.	.	Atlas-INDEL
OR56B1	387748	hgsc.bcm.edu	hg19	11	5758619	5758619	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OR56B1	NM_001005180	exon1	c.872delT	p.I291fs	.	.	146.0	10.0	120.0	0.0	.	38	.	.	Atlas-INDEL
SLC11A2	4891	hgsc.bcm.edu	hg19	12	51386667	51386667	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC11A2	NM_001174125	exon12	c.1211delG	p.W404fs	.	.	152.0	10.0	110.0	0.0	.	51	.	.	Atlas-INDEL
KIF5B	3799	hgsc.bcm.edu	hg19	10	32320045	32320045	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KIF5B	NM_004521	exon14	c.1538delC	p.T513fs	.	.	145.0	11.0	121.0	0.0	.	81	.	.	Atlas-INDEL
INTS2	57508	hgsc.bcm.edu	hg19	17	59946495	59946495	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	INTS2	NM_020748	exon23	c.3169delG	p.A1057fs	.	.	160.0	10.0	133.0	0.0	.	89	.	.	Atlas-INDEL
IL21R	50615	hgsc.bcm.edu	hg19	16	27441412	27441412	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IL21R	NM_181079	exon3	c.85delG	p.A29fs	.	.	135.0	10.0	144.0	0.0	.	95	.	.	Atlas-INDEL
ARL2BP	23568	hgsc.bcm.edu	hg19	16	57282542	57282542	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ARL2BP	NM_012106	exon3	c.193delA	p.I65fs	.	.	163.0	10.0	105.0	0.0	.	20	.	.	Atlas-INDEL
SMG1	23049	hgsc.bcm.edu	hg19	16	18865999	18865999	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	SMG1,colon,carcinoma,0,1	SMG1	NM_015092	exon30	c.4463delC	p.T1488fs	.	.	196.0	13.0	158.0	0.0	.	401	.	.	Atlas-INDEL
HAUS6	54801	hgsc.bcm.edu	hg19	9	19094365	19094365	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HAUS6	NM_017645	exon3	c.254delG	p.S85fs	.	.	211.0	13.0	279.0	0.0	.	66	.	.	Atlas-INDEL
OVCH2	341277	hgsc.bcm.edu	hg19	11	7721868	7721868	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OVCH2	NM_198185	exon7	c.877delT	p.W293fs	.	.	208.0	13.0	184.0	0.0	.	47	.	.	Atlas-INDEL
CPA4	51200	hgsc.bcm.edu	hg19	7	129944394	129944394	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPA4	NM_016352	exon5	c.460delG	p.E154fs	.	.	188.0	12.0	169.0	0.0	.	47	.	.	Atlas-INDEL
TAC3	6866	hgsc.bcm.edu	hg19	12	57406176	57406176	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAC3	NM_013251	exon6	c.354delG	p.P118fs	.	.	146.0	10.0	104.0	0.0	.	11	.	.	Atlas-INDEL
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72363374	72363374	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	SLC4A4_ENST00000425175,caecum,carcinoma,0,2	SLC4A4	NM_001134742	exon16	c.2130delG	p.L710fs	.	.	132.0	11.0	101.0	0.0	.	269	.	.	Atlas-INDEL
DMPK	1760	hgsc.bcm.edu	hg19	19	46283130	46283130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMPK	NM_001081563	exon1	c.189delA	p.P63fs	.	.	107.0	10.0	70.0	0.0	.	74	.	.	Atlas-INDEL
TMEM69	51249	hgsc.bcm.edu	hg19	1	46158890	46158890	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM69	NM_016486	exon3	c.56delC	p.S19fs	.	.	165.0	10.0	136.0	0.0	.	20	.	.	Atlas-INDEL
CPEB4	80315	hgsc.bcm.edu	hg19	5	173317577	173317577	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CPEB4	NM_030627	exon1	c.840delA	p.K280fs	.	.	140.0	11.0	92.0	0.0	.	54	.	.	Atlas-INDEL
CGNL1	84952	hgsc.bcm.edu	hg19	15	57743740	57743740	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CGNL1	NM_001252335	exon6	c.1845delG	p.Q615fs	.	.	179.0	11.0	154.0	0.0	.	125	.	.	Atlas-INDEL
NXPE4	54827	hgsc.bcm.edu	hg19	11	114450944	114450944	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001077639	exon5	c.1010delT	p.M337fs	.	.	293.0	18.0	254.0	0.0	.	.	.	.	Atlas-INDEL
RUFY2	55680	hgsc.bcm.edu	hg19	10	70139221	70139221	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RUFY2	NM_017987	exon12	c.1271delC	p.T424fs	.	.	151.0	11.0	125.0	0.0	.	58	.	.	Atlas-INDEL
ABCG5	64240	hgsc.bcm.edu	hg19	2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCG5	NM_022436	exon11	c.1529delA	p.H510fs	.	.	150.0	10.0	148.0	0.0	.	72	.	.	Atlas-INDEL
CDKAL1	54901	hgsc.bcm.edu	hg19	6	21108646	21108646	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDKAL1	NM_017774	exon13	c.1250delC	p.T417fs	.	.	139.0	11.0	106.0	0.0	.	55	.	.	Atlas-INDEL
GPC5	2262	hgsc.bcm.edu	hg19	13	92797194	92797194	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	GPC5,NS,carcinoma,0,1	GPC5	NM_004466	exon7	c.1512delC	p.C504fs	.	.	160.0	10.0	169.0	0.0	.	140	.	.	Atlas-INDEL
YLPM1	56252	hgsc.bcm.edu	hg19	14	75264632	75264632	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	YLPM1	NM_019589	exon5	c.2631delT	p.F877fs	.	.	194.0	12.0	146.0	0.0	.	298	.	.	Atlas-INDEL
DCAF16	54876	hgsc.bcm.edu	hg19	4	17805674	17805674	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DCAF16	NM_017741	exon3	c.92delA	p.E31fs	.	.	146.0	10.0	105.0	0.0	.	19	.	.	Atlas-INDEL
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84465717	84465717	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AGPAT9	NM_032717	exon2	c.169delA	p.T57fs	.	.	166.0	11.0	117.0	0.0	.	41	.	.	Atlas-INDEL
STAT6	6778	hgsc.bcm.edu	hg19	12	57499025	57499025	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STAT6	NM_003153	exon9	c.911delC	p.A304fs	.	.	133.0	10.0	98.0	0.0	.	69	.	.	Atlas-INDEL
UTP15	84135	hgsc.bcm.edu	hg19	5	72864105	72864105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UTP15	NM_032175	exon3	c.135delC	p.D45fs	.	.	249.0	17.0	171.0	0.0	.	30	.	.	Atlas-INDEL
SETD1A	9739	hgsc.bcm.edu	hg19	16	30990582	30990582	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETD1A	NM_014712	exon14	c.3474delG	p.L1158fs	.	.	246.0	18.0	212.0	0.0	.	143	.	.	Atlas-INDEL
TESK1	7016	hgsc.bcm.edu	hg19	9	35607647	35607647	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TESK1	NM_006285	exon6	c.688delC	p.R230fs	.	.	119.0	11.0	125.0	0.0	.	46	.	.	Atlas-INDEL
GRIA3	2892	hgsc.bcm.edu	hg19	X	122528855	122528855	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GRIA3	NM_000828	exon6	c.786delT	p.H262fs	.	.	200.0	12.0	155.0	0.0	.	386	.	.	Atlas-INDEL
TSPAN18	90139	hgsc.bcm.edu	hg19	11	44931375	44931375	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSPAN18	NM_130783	exon4	c.182delT	p.M61fs	.	.	149.0	11.0	110.0	0.0	.	38	.	.	Atlas-INDEL
ABCB7	22	hgsc.bcm.edu	hg19	X	74282215	74282215	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ABCB7	NM_004299	exon14	c.1887delA	p.P629fs	.	.	166.0	13.0	126.0	0.0	.	69	.	.	Atlas-Indel,Pindel
AQR	9716	hgsc.bcm.edu	hg19	15	35182501	35182501	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AQR	NM_014691	exon24	c.2597delT	p.I866fs	.	.	152.0	10.0	145.0	0.0	.	139	.	.	Atlas-INDEL
ZNF493	284443	hgsc.bcm.edu	hg19	19	21588652	21588652	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF493	NM_145326	exon3	c.249delA	p.K83fs	.	.	103.0	11.0	74.0	0.0	.	178	.	.	Atlas-INDEL
PKN1	5585	hgsc.bcm.edu	hg19	19	14561143	14561143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PKN1	NM_213560	exon5	c.641delT	p.L214fs	.	.	227.0	16.0	219.0	0.0	.	99	.	.	Atlas-INDEL
GPKOW	27238	hgsc.bcm.edu	hg19	X	48970804	48970804	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPKOW	NM_015698	exon10	c.1284delA	p.P428fs	.	.	156.0	10.0	103.0	0.0	.	38	.	.	Atlas-INDEL
RMND5A	64795	hgsc.bcm.edu	hg19	2	86992185	86992185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RMND5A	NM_022780	exon5	c.556delC	p.Q186fs	.	.	214.0	13.0	173.0	0.0	.	33	.	.	Atlas-INDEL
SETX	23064	hgsc.bcm.edu	hg19	9	135173586	135173586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SETX	NM_015046	exon13	c.5663delG	p.R1888fs	.	.	174.0	11.0	155.0	0.0	.	234	.	.	Atlas-INDEL
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94642030	94642030	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PLXNC1	NM_005761	exon14	c.2619delC	p.S873fs	.	.	148.0	10.0	131.0	0.0	.	135	.	.	Atlas-INDEL
VIPR2	7434	hgsc.bcm.edu	hg19	7	158902515	158902515	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VIPR2	NM_003382	exon3	c.248delA	p.Y83fs	.	.	145.0	11.0	75.0	0.0	.	53	.	.	Atlas-INDEL
WDR17	116966	hgsc.bcm.edu	hg19	4	177052791	177052791	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	WDR17	NM_170710	exon8	c.1071delA	p.A357fs	.	.	173.0	12.0	223.0	0.0	.	198	.	.	Atlas-INDEL
PLEKHG4	25894	hgsc.bcm.edu	hg19	16	67316441	67316441	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	PLEKHG4,NS,carcinoma,0,1	PLEKHG4	NM_001129729	exon10	c.1288delC	p.R430fs	.	.	156.0	10.0	110.0	0.0	.	94	.	.	Atlas-INDEL
FCER1A	2205	hgsc.bcm.edu	hg19	1	159275825	159275825	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FCER1A	NM_002001	exon5	c.378delG	p.Q126fs	.	.	199.0	12.0	123.0	0.0	.	74	.	.	Atlas-INDEL
RIPK1	8737	hgsc.bcm.edu	hg19	6	3077159	3077159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RIPK1	NM_003804	exon1	c.101delG	p.C34fs	.	.	181.0	11.0	129.0	0.0	.	56	.	.	Atlas-INDEL
DHTKD1	55526	hgsc.bcm.edu	hg19	10	12154919	12154919	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DHTKD1	NM_018706	exon13	c.2174delA	p.E725fs	.	.	154.0	12.0	111.0	0.0	.	104	.	.	Atlas-INDEL
CFH	3075	hgsc.bcm.edu	hg19	1	196706674	196706674	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CFH	NM_000186	exon17	c.2665delG	p.E889fs	.	.	171.0	11.0	104.0	0.0	.	251	.	.	Atlas-INDEL
LBR	3930	hgsc.bcm.edu	hg19	1	225607149	225607149	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LBR	NM_194442	exon5	c.457delT	p.F153fs	.	.	159.0	10.0	80.0	0.0	.	54	.	.	Atlas-INDEL
PLAU	5328	hgsc.bcm.edu	hg19	10	75673438	75673438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	PLAU	NM_002658	exon7	c.601delC	p.R201fs	.	.	264.0	16.0	189.0	0.0	.	47	.	.	Atlas-INDEL
DMXL1	1657	hgsc.bcm.edu	hg19	5	118483090	118483090	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DMXL1	NM_005509	exon17	c.2835delG	p.L945fs	.	.	216.0	14.0	167.0	0.0	.	268	.	.	Atlas-INDEL
TMEM108	66000	hgsc.bcm.edu	hg19	3	133098904	133098904	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TMEM108	NM_023943	exon4	c.348delG	p.G116fs	.	.	181.0	11.0	153.0	0.0	.	67	.	.	Atlas-INDEL
DNAJC2	27000	hgsc.bcm.edu	hg19	7	102953447	102953447	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DNAJC2	NM_014377	exon16	c.1739delT	p.I580fs	.	.	176.0	12.0	152.0	0.0	.	46	.	.	Atlas-INDEL
HDC	3067	hgsc.bcm.edu	hg19	15	50549687	50549687	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	HDC,NS,carcinoma,0,1	HDC	NM_002112	exon4	c.377delT	p.M126fs	.	.	164.0	16.0	108.0	0.0	.	86	.	.	Atlas-INDEL
HTR6	3362	hgsc.bcm.edu	hg19	1	19992674	19992674	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HTR6	NM_000871	exon1	c.427delG	p.A143fs	.	.	192.0	13.0	185.0	0.0	.	38	.	.	Atlas-INDEL
ACTR8	93973	hgsc.bcm.edu	hg19	3	53902877	53902877	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACTR8	NM_022899	exon13	c.1745delG	p.R582fs	.	.	163.0	10.0	123.0	0.0	.	56	.	.	Atlas-INDEL
ANKRD20A3	441425	hgsc.bcm.edu	hg19	9	42380200	42380200	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_001012419	exon6	c.786delG	p.E262fs	.	.	156.0	10.0	129.0	0.0	.	.	.	.	Atlas-INDEL
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171527040	171527040	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_015172	exon19	c.5782delG	p.A1928fs	.	.	279.0	19.0	186.0	0.0	.	.	.	.	Atlas-INDEL
FOXI1	2299	hgsc.bcm.edu	hg19	5	169533034	169533034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXI1	NM_012188	exon1	c.72delG	p.E24fs	.	.	294.0	18.0	296.0	0.0	.	70	.	.	Atlas-INDEL
ZNF8	7554	hgsc.bcm.edu	hg19	19	58806805	58806805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF8	NM_021089	exon4	c.1630delC	p.Q544fs	.	.	117.0	10.0	90.0	0.0	.	60	.	.	Atlas-INDEL
ZNF813	126017	hgsc.bcm.edu	hg19	19	53995078	53995078	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF813	NM_001004301	exon4	c.1591delG	p.V531fs	.	.	164.0	11.0	108.0	0.0	.	81	.	.	Atlas-INDEL
GPCPD1	56261	hgsc.bcm.edu	hg19	20	5560674	5560674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GPCPD1	NM_019593	exon7	c.454delT	p.L152X	.	.	202.0	13.0	104.0	0.0	.	52	.	.	Atlas-INDEL
CYP2B6	1555	hgsc.bcm.edu	hg19	19	41510031	41510031	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CYP2B6,NS,malignant_melanoma,0,1	CYP2B6	NM_000767	exon2	c.296delG	p.G99fs	.	.	147.0	10.0	120.0	0.0	.	79	.	.	Atlas-INDEL
FOXN4	121643	hgsc.bcm.edu	hg19	12	109725737	109725737	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FOXN4	NM_213596	exon5	c.381delC	p.G127fs	.	.	182.0	11.0	139.0	0.0	.	74	.	.	Atlas-INDEL
TNPO2	30000	hgsc.bcm.edu	hg19	19	12825735	12825735	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TNPO2	NM_013433	exon9	c.791delA	p.Q264fs	.	.	148.0	10.0	152.0	0.0	.	108	.	.	Atlas-INDEL
LETM1	3954	hgsc.bcm.edu	hg19	4	1818594	1818594	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LETM1	NM_012318	exon12	c.1792delT	p.Y598fs	.	.	316.0	20.0	258.0	0.0	.	48	.	.	Atlas-INDEL
DTX3L	151636	hgsc.bcm.edu	hg19	3	122284754	122284754	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	DTX3L,colon,carcinoma,0,2	DTX3L	NM_138287	exon2	c.235delG	p.E79fs	.	.	149.0	13.0	135.0	0.0	.	59	.	.	Atlas-INDEL
TAS2R13	50838	hgsc.bcm.edu	hg19	12	11061232	11061232	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TAS2R13	NM_023920	exon1	c.667delA	p.R223fs	.	.	216.0	14.0	171.0	0.0	.	29	.	.	Atlas-INDEL
LAMA3	3909	hgsc.bcm.edu	hg19	18	21425024	21425024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LAMA3	NM_001127717	exon30	c.3654delC	p.H1218fs	.	.	166.0	10.0	126.0	0.0	.	397	.	.	Atlas-INDEL
VPS13D	55187	hgsc.bcm.edu	hg19	1	12439636	12439636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	VPS13D	NM_015378	exon57	c.11175delT	p.H3725fs	.	.	155.0	10.0	133.0	0.0	.	316	.	.	Atlas-INDEL
SELENBP1	8991	hgsc.bcm.edu	hg19	1	151341939	151341939	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SELENBP1	NM_001258289	exon3	c.280delA	p.K94fs	.	.	214.0	13.0	102.0	0.0	.	44	.	.	Atlas-INDEL
STOML1	9399	hgsc.bcm.edu	hg19	15	74284520	74284520	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STOML1	NM_004809	exon1	c.46delG	p.D16fs	.	.	155.0	11.0	188.0	0.0	.	22	.	.	Atlas-INDEL
FAM194A	131831	hgsc.bcm.edu	hg19	3	150421477	150421477	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM194A	NM_152394	exon1	c.210delT	p.P70fs	.	.	183.0	11.0	175.0	0.0	.	91	.	.	Atlas-INDEL
FKBP5	2289	hgsc.bcm.edu	hg19	6	35587912	35587912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	FKBP5_ENST00000542713,NS,carcinoma,0,2	FKBP5	NM_001145775	exon5	c.391delG	p.E131fs	.	.	139.0	11.0	105.0	0.0	.	64	.	.	Atlas-INDEL
AMIGO2	347902	hgsc.bcm.edu	hg19	12	47471280	47471280	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AMIGO2	NM_181847	exon2	c.1507delA	p.K503fs	.	.	173.0	11.0	133.0	0.0	.	50	.	.	Atlas-INDEL
STEAP1B	256227	hgsc.bcm.edu	hg19	7	22533027	22533027	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STEAP1B	NM_001164460	exon3	c.514delG	p.A172fs	.	.	225.0	17.0	177.0	0.0	.	22	.	.	Atlas-INDEL
RINL	126432	hgsc.bcm.edu	hg19	19	39359906	39359906	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RINL	NM_001195833	exon11	c.1620delG	p.K540fs	.	.	156.0	10.0	157.0	0.0	.	32	.	.	Atlas-INDEL
CNTN3	5067	hgsc.bcm.edu	hg19	3	74413707	74413707	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	CNTN3,NS,carcinoma,0,1	CNTN3	NM_020872	exon9	c.1125delC	p.N375fs	.	.	179.0	12.0	130.0	0.0	.	174	.	.	Atlas-INDEL
CYLD	1540	hgsc.bcm.edu	hg19	16	50785567	50785567	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CYLD	NM_001042355	exon4	c.556delC	p.L186fs	.	.	142.0	10.0	116.0	0.0	.	150	.	.	Atlas-INDEL
PABPC3	5042	hgsc.bcm.edu	hg19	13	25670906	25670906	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PABPC3	NM_030979	exon1	c.569delT	p.F190fs	.	.	110.0	10.0	164.0	0.0	.	129	.	.	Atlas-INDEL
TTC3	7267	hgsc.bcm.edu	hg19	21	38494152	38494152	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTC3	NM_001001894	exon12	c.935delT	p.L312fs	.	.	187.0	12.0	204.0	0.0	.	182	.	.	Atlas-INDEL
DRAP1	10589	hgsc.bcm.edu	hg19	11	65688853	65688853	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DRAP1	NM_006442	exon7	c.564delG	p.A188fs	.	.	378.0	23.0	218.0	0.0	.	18	.	.	Atlas-INDEL
LIG3	3980	hgsc.bcm.edu	hg19	17	33323630	33323630	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	LIG3	NM_013975	exon11	c.1780delG	p.V594fs	.	.	167.0	11.0	127.0	0.0	.	164	.	.	Atlas-INDEL
FAM161A	84140	hgsc.bcm.edu	hg19	2	62067256	62067256	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FAM161A	NM_032180	exon3	c.884delT	p.L295fs	.	.	156.0	11.0	155.0	0.0	.	200	.	.	Atlas-INDEL
MAP1S	55201	hgsc.bcm.edu	hg19	19	17836717	17836717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP1S	NM_018174	exon5	c.523delT	p.W175fs	.	.	171.0	12.0	208.0	0.0	.	74	.	.	Atlas-INDEL
RNPS1	10921	hgsc.bcm.edu	hg19	16	2314622	2314622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RNPS1	NM_006711	exon2	c.24delG	p.K8fs	.	.	126.0	11.0	90.0	0.0	.	18	.	.	Atlas-INDEL
DYNC1LI1	51143	hgsc.bcm.edu	hg19	3	32570036	32570036	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DYNC1LI1	NM_016141	exon12	c.1365delG	p.K455fs	.	.	116.0	10.0	101.0	0.0	.	23	.	.	Atlas-INDEL
PDYN	5173	hgsc.bcm.edu	hg19	20	1961108	1961108	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDYN	NM_001190898	exon4	c.627delC	p.G209fs	.	.	219.0	16.0	189.0	0.0	.	74	.	.	Atlas-INDEL
ANKS1B	56899	hgsc.bcm.edu	hg19	12	100166806	100166806	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ANKS1B	NM_152788	exon8	c.1023delG	p.K341fs	.	.	234.0	15.0	212.0	0.0	.	180	.	.	Atlas-INDEL
STK32B	55351	hgsc.bcm.edu	hg19	4	5053615	5053615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	STK32B	NM_018401	exon1	c.24delG	p.K8fs	.	.	166.0	14.0	145.0	0.0	.	87	.	.	Atlas-INDEL
ZNF248	57209	hgsc.bcm.edu	hg19	10	38121237	38121237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF248	NM_021045	exon6	c.1047delA	p.G349fs	.	.	243.0	15.0	172.0	0.0	.	61	.	.	Atlas-INDEL
CCDC73	493860	hgsc.bcm.edu	hg19	11	32663555	32663555	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CCDC73	NM_001008391	exon13	c.1014delT	p.T338fs	.	.	161.0	10.0	172.0	0.0	.	136	.	.	Atlas-INDEL
KLK6	5653	hgsc.bcm.edu	hg19	19	51470427	51470427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLK6	NM_001012964	exon3	c.196delC	p.P66fs	.	.	190.0	13.0	104.0	0.0	.	35	.	.	Atlas-INDEL
BPIFB3	359710	hgsc.bcm.edu	hg19	20	31656746	31656746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_182658	exon10	c.1115delA	p.K372fs	.	.	155.0	11.0	150.0	0.0	.	.	.	.	Atlas-INDEL
PNN	5411	hgsc.bcm.edu	hg19	14	39648419	39648419	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PNN	NM_002687	exon7	c.622delC	p.L208fs	.	.	145.0	11.0	106.0	0.0	.	67	.	.	Atlas-INDEL
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122680077	122680077	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEMA5B	NM_001256347	exon2	c.197delA	p.H66fs	.	.	204.0	14.0	151.0	0.0	.	303	.	.	Atlas-INDEL
ZNF518B	85460	hgsc.bcm.edu	hg19	4	10445202	10445202	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF518B	NM_053042	exon3	c.2752delC	p.Q918fs	.	.	158.0	10.0	141.0	0.0	.	116	.	.	Atlas-INDEL
KHSRP	8570	hgsc.bcm.edu	hg19	19	6415893	6415893	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KHSRP	NM_003685	exon16	c.1614delT	p.P538fs	.	.	193.0	12.0	154.0	0.0	.	51	.	.	Atlas-INDEL
SPATA31A1	647060	hgsc.bcm.edu	hg19	9	39890582	39890582	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	.	NM_001085452	exon4	c.3568delC	p.Q1190fs	.	.	187.0	14.0	153.0	0.0	.	.	.	.	Atlas-INDEL
TTLL12	23170	hgsc.bcm.edu	hg19	22	43572405	43572405	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TTLL12	NM_015140	exon7	c.841-2T>-	.	.	.	190.0	13.0	143.0	0.0	.	50	.	.	Atlas-INDEL
MTFMT	123263	hgsc.bcm.edu	hg19	15	65295429	65295429	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MTFMT	NM_139242	exon9	c.1142delC	p.T381fs	.	.	115.0	10.0	76.0	0.0	.	28	.	.	Atlas-INDEL
IQCC	55721	hgsc.bcm.edu	hg19	1	32673443	32673443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	IQCC	NM_001160042	exon5	c.1400delT	p.L467fs	.	.	187.0	13.0	135.0	0.0	.	46	.	.	Atlas-INDEL
TSHR	7253	hgsc.bcm.edu	hg19	14	81610522	81610522	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	TSHR,NS,carcinoma,0,1	TSHR	NM_000369	exon10	c.2119delC	p.R707fs	.	.	200.0	13.0	152.0	0.0	.	462	.	.	Atlas-INDEL
TSPYL5	85453	hgsc.bcm.edu	hg19	8	98289664	98289664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TSPYL5	NM_033512	exon1	c.410delG	p.R137fs	.	.	187.0	13.0	178.0	0.0	.	48	.	.	Atlas-INDEL
PXDN	7837	hgsc.bcm.edu	hg19	2	1670061	1670061	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PXDN	NM_012293	exon10	c.1217delA	p.D406fs	.	.	287.0	18.0	257.0	0.0	.	255	.	.	Atlas-INDEL
CDH20	28316	hgsc.bcm.edu	hg19	18	59195338	59195338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CDH20	NM_031891	exon6	c.1155delG	p.E385fs	.	.	281.0	17.0	227.0	0.0	.	117	.	.	Atlas-INDEL
AFF3	3899	hgsc.bcm.edu	hg19	2	100170975	100170975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AFF3	NM_001025108	exon23	c.3433delA	p.M1145fs	.	.	103.0	10.0	70.0	0.0	.	164	.	.	Atlas-INDEL
FKBP15	23307	hgsc.bcm.edu	hg19	9	115931867	115931867	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	FKBP15	NM_015258	exon26	c.3123delG	p.P1041fs	.	.	202.0	13.0	146.0	0.0	.	128	.	.	Atlas-INDEL
ZNF354A	6940	hgsc.bcm.edu	hg19	5	178139937	178139937	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF354A	NM_005649	exon5	c.943delA	p.I315fs	.	.	158.0	12.0	104.0	0.0	.	74	.	.	Atlas-INDEL
RACGAP1	29127	hgsc.bcm.edu	hg19	12	50399098	50399098	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RACGAP1	NM_013277	exon6	c.367delT	p.S123fs	.	.	144.0	10.0	143.0	0.0	.	36	.	.	Atlas-INDEL
KLHDC8B	200942	hgsc.bcm.edu	hg19	3	49210244	49210244	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	KLHDC8B	NM_173546	exon2	c.41delT	p.F14fs	.	.	145.0	10.0	128.0	0.0	.	28	.	.	Atlas-INDEL
NFAT5	10725	hgsc.bcm.edu	hg19	16	69727260	69727260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NFAT5	NM_138713	exon13	c.3531delA	p.A1177fs	.	.	206.0	15.0	112.0	0.0	.	184	.	.	Atlas-INDEL
DEFB131	644414	hgsc.bcm.edu	hg19	4	9446272	9446272	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	DEFB131	NM_001040448	exon1	c.12delG	p.L4fs	.	.	213.0	14.0	208.0	0.0	.	12	.	.	Atlas-INDEL
ZBTB12	221527	hgsc.bcm.edu	hg19	6	31868583	31868583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZBTB12	NM_181842	exon2	c.501delA	p.P167fs	.	.	164.0	12.0	59.0	0.0	.	25	.	.	Atlas-INDEL
MAPK14	1432	hgsc.bcm.edu	hg19	6	36063826	36063826	+	Frame_Shift_Del	DEL	A	A	-	rs150174370		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	MAPK14_ENST00000229794,NS,carcinoma,0,1	MAPK14	NM_139014	exon9	c.744delG	p.K248fs	.	.	118.0	10.0	118.0	0.0	.	75	.	.	Atlas-INDEL
HIRA	7290	hgsc.bcm.edu	hg19	22	19346949	19346949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HIRA	NM_003325	exon18	c.2145delC	p.G715fs	.	.	154.0	10.0	112.0	0.0	.	100	.	.	Atlas-INDEL
GNPAT	8443	hgsc.bcm.edu	hg19	1	231403484	231403484	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GNPAT	NM_014236	exon9	c.1113delC	p.Y371X	.	.	146.0	10.0	73.0	0.0	.	73	.	.	Atlas-INDEL
DOCK5	80005	hgsc.bcm.edu	hg19	8	25136115	25136115	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DOCK5	NM_024940	exon5	c.254delT	p.L85fs	.	.	198.0	12.0	215.0	0.0	.	167	.	.	Atlas-INDEL
ALS2CR12	130540	hgsc.bcm.edu	hg19	2	202164026	202164026	+	Splice_Site	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ALS2CR12	NM_001127391	exon13	c.880-2T>-	.	.	.	145.0	13.0	117.0	0.0	.	54	.	.	Atlas-INDEL
ZNF385B	151126	hgsc.bcm.edu	hg19	2	180634453	180634453	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF385B	NM_152520	exon3	c.31delG	p.E11fs	.	.	146.0	10.0	118.0	0.0	.	68	.	.	Atlas-INDEL
AP1G2	8906	hgsc.bcm.edu	hg19	14	24032654	24032654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	AP1G2	NM_003917	exon14	c.1346delC	p.A449fs	.	.	249.0	15.0	163.0	0.0	.	75	.	.	Atlas-INDEL
MYO18B	84700	hgsc.bcm.edu	hg19	22	26164836	26164836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MYO18B	NM_032608	exon4	c.952delT	p.W318fs	.	.	127.0	11.0	99.0	0.0	.	322	.	.	Atlas-INDEL
DCST2	127579	hgsc.bcm.edu	hg19	1	155001838	155001838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	DCST2	NM_144622	exon8	c.1214delA	p.Y405fs	.	.	209.0	13.0	93.0	0.0	.	80	.	.	Atlas-INDEL
SLC35D3	340146	hgsc.bcm.edu	hg19	6	137243900	137243900	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC35D3	NM_001008783	exon1	c.333delG	p.L111fs	.	.	218.0	19.0	252.0	0.0	.	33	.	.	Atlas-INDEL
SLC35D2	11046	hgsc.bcm.edu	hg19	9	99099002	99099002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC35D2	NM_007001	exon9	c.750delG	p.L250fs	.	.	149.0	10.0	115.0	0.0	.	20	.	.	Atlas-INDEL
TPCN1	53373	hgsc.bcm.edu	hg19	12	113704017	113704017	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	TPCN1	NM_001143819	exon5	c.485delA	p.H162fs	.	.	149.0	10.0	179.0	0.0	.	109	.	.	Atlas-INDEL
SEC31A	22872	hgsc.bcm.edu	hg19	4	83763594	83763594	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SEC31A	NM_001077207	exon22	c.2668delT	p.S890fs	.	.	151.0	12.0	127.0	0.0	.	227	.	.	Atlas-INDEL
IRAK1	3654	hgsc.bcm.edu	hg19	X	153278528	153278528	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	IRAK1	NM_001569	exon12	c.1897delA	p.S633fs	.	.	123.0	10.0	85.0	0.0	.	107	.	.	Atlas-INDEL
CLDN8	9073	hgsc.bcm.edu	hg19	21	31587622	31587622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CLDN8	NM_199328	exon1	c.623delG	p.S208fs	.	.	182.0	12.0	207.0	0.0	.	40	.	.	Atlas-INDEL
PCED1B	91523	hgsc.bcm.edu	hg19	12	47630043	47630043	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_138371	exon2	c.1196delG	p.G399fs	.	.	186.0	12.0	127.0	0.0	.	.	.	.	Atlas-INDEL
NFATC1	4772	hgsc.bcm.edu	hg19	18	77227633	77227633	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	NFATC1	NM_172390	exon8	c.2142delC	p.C714fs	.	.	149.0	10.0	76.0	0.0	.	105	.	.	Atlas-INDEL
GABRQ	55879	hgsc.bcm.edu	hg19	X	151820189	151820189	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GABRQ	NM_018558	exon8	c.1101delA	p.R367fs	.	.	105.0	11.0	78.0	0.0	.	131	.	.	Atlas-INDEL
JAZF1	221895	hgsc.bcm.edu	hg19	7	28220144	28220144	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	JAZF1	NM_175061	exon1	c.54delC	p.G18fs	.	.	187.0	12.0	113.0	0.0	.	13	.	.	Atlas-INDEL
N4BP1	9683	hgsc.bcm.edu	hg19	16	48596002	48596002	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	N4BP1	NM_153029	exon2	c.553delG	p.E185fs	.	.	128.0	11.0	121.0	0.0	.	121	.	.	Atlas-INDEL
HSP90B1	7184	hgsc.bcm.edu	hg19	12	104340586	104340586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HSP90B1	NM_003299	exon16	c.2128delG	p.V710fs	.	.	189.0	13.0	123.0	0.0	.	72	.	.	Atlas-INDEL
C6orf89	221477	hgsc.bcm.edu	hg19	6	36870160	36870160	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	C6orf89	NM_152734	exon3	c.373delG	p.E125fs	.	.	155.0	10.0	135.0	0.0	.	39	.	.	Atlas-INDEL
MAP1A	4130	hgsc.bcm.edu	hg19	15	43816721	43816721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MAP1A	NM_002373	exon4	c.3049delG	p.E1017fs	.	.	123.0	10.0	108.0	0.0	.	189	.	.	Atlas-INDEL
SREK1IP1	285672	hgsc.bcm.edu	hg19	5	64050152	64050152	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SREK1IP1	NM_173829	exon2	c.52delT	p.C18fs	.	.	243.0	17.0	175.0	0.0	.	28	.	.	Atlas-INDEL
RUFY4	285180	hgsc.bcm.edu	hg19	2	218938584	218938584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	RUFY4	NM_198483	exon8	c.575delG	p.R192fs	.	.	153.0	11.0	131.0	0.0	.	59	.	.	Atlas-INDEL
ENTPD5	957	hgsc.bcm.edu	hg19	14	74453565	74453565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.,1	ENTPD5	NM_001249	exon5	c.250delG	p.D84fs	.	.	201.0	13.0	162.0	0.0	.	26	.	.	Atlas-INDEL
UNC79	57578	hgsc.bcm.edu	hg19	14	94100954	94100954	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	UNC79	NM_020818	exon32	c.5272delG	p.A1758fs	.	.	207.0	15.0	196.0	0.0	.	366	.	.	Atlas-INDEL
GAS2L3	283431	hgsc.bcm.edu	hg19	12	101017470	101017470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	GAS2L3	NM_174942	exon10	c.886delC	p.Q296fs	.	.	183.0	11.0	149.0	0.0	.	76	.	.	Atlas-INDEL
OCSTAMP	128506	hgsc.bcm.edu	hg19	20	45170221	45170221	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	OCSTAMP	NM_080721	exon3	c.1394delA	p.D465fs	.	.	178.0	11.0	128.0	0.0	.	34	.	.	Atlas-INDEL
ACTR6	64431	hgsc.bcm.edu	hg19	12	100599500	100599500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ACTR6	NM_022496	exon3	c.232delC	p.L78fs	.	.	175.0	13.0	110.0	0.0	.	29	.	.	Atlas-INDEL
CORO2A	7464	hgsc.bcm.edu	hg19	9	100889088	100889088	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	CORO2A	NM_003389	exon11	c.1190delT	p.L397fs	.	.	120.0	10.0	80.0	0.0	.	54	.	.	Atlas-INDEL
ZNF286A	57335	hgsc.bcm.edu	hg19	17	15619756	15619756	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	ZNF286A,NS,carcinoma,0,1	ZNF286A	NM_020652	exon6	c.717delG	p.E239fs	.	.	228.0	14.0	177.0	0.0	.	58	.	.	Atlas-INDEL
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55146491	55146491	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PDGFRA	NM_006206	exon16	c.2164delA	p.I722fs	.	.	185.0	12.0	174.0	0.0	.	1583	.	.	Atlas-INDEL
ADAP1	11033	hgsc.bcm.edu	hg19	7	939058	939058	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ADAP1	NM_006869	exon9	c.866delT	p.L289fs	.	.	254.0	16.0	202.0	0.0	.	23	.	.	Atlas-INDEL
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85279291	85279291	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	SLC6A15	NM_018057	exon4	c.498delG	p.L166fs	.	.	155.0	10.0	145.0	0.0	.	159	.	.	Atlas-INDEL
PTGR1	22949	hgsc.bcm.edu	hg19	9	114355220	114355220	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	PTGR1	NM_001146108	exon4	c.196delC	p.Q66fs	.	.	208.0	15.0	134.0	0.0	.	23	.	.	Atlas-INDEL
HCFC2	29915	hgsc.bcm.edu	hg19	12	104495863	104495863	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	HCFC2	NM_013320	exon14	c.1995delC	p.S665fs	.	.	164.0	11.0	162.0	0.0	.	94	.	.	Atlas-INDEL
MUC16	94025	hgsc.bcm.edu	hg19	19	9066715	9066715	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	MUC16	NM_024690	exon3	c.20732delC	p.T6911fs	.	.	196.0	13.0	164.0	0.0	.	4315	.	.	Atlas-INDEL
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105412200	105412200	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	AHNAK2	NM_138420	exon7	c.9589delT	p.S3197fs	.	.	254.0	11.0	166.0	0.0	.	719	.	.	Pindel
ZNF443	10224	hgsc.bcm.edu	hg19	19	12541062	12541062	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF443	NM_005815	exon4	c.1925delC	p.T642fs	.	.	277.0	14.0	219.0	0.0	.	63	.	.	Pindel
TRMT13	54482	hgsc.bcm.edu	hg19	1	100613582	100613582	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	.	NM_019083	exon10	c.949delG	p.E317fs	.	.	201.0	10.0	183.0	0.0	.	.	.	.	Pindel
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56393388	56393388	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	BZRAP1	NM_004758	exon16	c.2095delG	p.E699fs	.	.	232.0	11.0	202.0	0.0	.	287	.	.	Pindel
ZNF311	282890	hgsc.bcm.edu	hg19	6	28963809	28963809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A0-01A-11D-A20W-10	TCGA-DD-A3A0-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	148ae891-9087-42b8-afa7-4365f5f6f571	e13dd465-5367-4faa-82bf-be30550c67b3	.	ZNF311	NM_001010877	exon7	c.971delC	p.T324fs	.	.	204.0	10.0	165.0	0.0	.	59	.	.	Pindel
