Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7797597	7797597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CAMTA1	NM_015215	exon15	c.A3625G	p.K1209E	ATACCCAAGGGAG	.	86.0	4.0	113.0	0.0	.	226	.	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10179596	10179596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UBE4B	NM_001105562	exon9	c.A1364G	p.Q455R	TCAGCCAGCTTCT	.	74.0	4.0	91.0	0.0	.	233	.	.	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	hg19	1	11301615	11301615	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTOR	NM_004958	exon10	c.A1536G	p.G512G	CCTTAGTCCCACT	.	133.0	7.0	170.0	0.0	.	327	.	.	Atlas-SNP
PADI1	29943	hgsc.bcm.edu	hg19	1	17550123	17550123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PADI1	NM_013358	exon3	c.T281C	p.V94A	TGAGGGTCTCCTA	.	67.0	4.0	82.0	0.0	.	77	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22180832	22180832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HSPG2	NM_005529	exon50	c.A6293G	p.H2098R	GAGCCGTGCACCT	.	62.0	4.0	67.0	0.0	.	311	.	.	Atlas-SNP
LUZP1	7798	hgsc.bcm.edu	hg19	1	23420185	23420185	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LUZP1	NM_033631	exon4	c.T570C	p.T190T	GCTCAGAGTTAAT	.	74.0	4.0	99.0	0.0	.	83	.	.	Atlas-SNP
PAQR7	164091	hgsc.bcm.edu	hg19	1	26189417	26189417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PAQR7	NM_178422	exon2	c.A914C	p.E305A	AGAGGCTCATAGA	.	246.0	150.0	304.0	0.0	.	23	.	.	Atlas-SNP
SLC9A1	6548	hgsc.bcm.edu	hg19	1	27480593	27480593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC9A1	NM_003047	exon1	c.T233C	p.V78A	TCAGTGACGGAAT	.	71.0	4.0	104.0	0.0	.	68	.	.	Atlas-SNP
KIAA1522	57648	hgsc.bcm.edu	hg19	1	33235850	33235850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA1522	NM_020888	exon6	c.A1070G	p.H357R	TTCCACATGCTGT	.	97.0	4.0	109.0	0.0	.	68	.	.	Atlas-SNP
ZMYM6	9204	hgsc.bcm.edu	hg19	1	35477608	35477608	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZMYM6	NM_007167	exon9	c.947-2A>G	.	GACACCTTGGTGA	.	74.0	4.0	71.0	0.0	.	110	.	.	Atlas-SNP
AGO4	192670	hgsc.bcm.edu	hg19	1	36298069	36298069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_017629	exon11	c.T1277C	p.V426A	AGGGTGTCTGGGA	.	86.0	4.0	48.0	0.0	.	.	.	.	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	hg19	1	38281195	38281195	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTF1	NM_005955	exon11	c.C1875T	p.I625I	TTTGATGATGATC	.	235.0	113.0	173.0	0.0	.	67	.	.	Atlas-SNP
TIE1	7075	hgsc.bcm.edu	hg19	1	43782874	43782874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TIE1	NM_005424	exon15	c.A2414G	p.E805G	AGGGCGAGGAGAC	.	140.0	7.0	95.0	0.0	.	132	.	.	Atlas-SNP
GPBP1L1	60313	hgsc.bcm.edu	hg19	1	46120863	46120863	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPBP1L1	NM_021639	exon5	c.A189G	p.G63G	CTCACCTCCTGCA	.	122.0	5.0	103.0	0.0	.	43	.	.	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46501154	46501154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MAST2	NM_015112	exon29	c.T4813C	p.S1605P	GGTCAGTCTGGAG	.	174.0	7.0	89.0	0.0	.	136	.	.	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	hg19	1	53716471	53716471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP8	NM_004631	exon17	c.C2567A	p.T856N	CTTTTGGTGTTCT	.	206.0	111.0	199.0	0.0	.	58	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62456035	62456035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	INADL	NM_176877	exon28	c.A3866G	p.E1289G	TCTTAGAGGTGAG	.	120.0	5.0	89.0	0.0	.	179	.	.	Atlas-SNP
SLC35D1	23169	hgsc.bcm.edu	hg19	1	67518481	67518481	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC35D1	NM_015139	exon3	c.T297C	p.P99P	AAGGTCAGGAAAC	.	124.0	5.0	68.0	0.0	.	22	.	.	Atlas-SNP
DNTTIP2	30836	hgsc.bcm.edu	hg19	1	94341250	94341250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNTTIP2	NM_014597	exon3	c.A1757G	p.Q586R	TTAGACTGTAGTT	.	108.0	5.0	90.0	0.0	.	59	.	.	Atlas-SNP
SASS6	163786	hgsc.bcm.edu	hg19	1	100571335	100571335	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SASS6	NM_194292	exon13	c.T1533C	p.P511P	CAGGTTAGGAGAA	.	141.0	6.0	128.0	0.0	.	61	.	.	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	hg19	1	145534216	145534216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITGA10	NM_003637	exon14	c.A1721G	p.E574G	CTCTGGAAGATGG	.	191.0	50.0	154.0	0.0	.	131	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152277969	152277969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FLG	NM_002016	exon3	c.T9393G	p.D3131E	AGAGCTATCTACC	.	441.0	111.0	341.0	0.0	.	900	.	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156496391	156496391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	IQGAP3,NS,carcinoma,0,2	IQGAP3	NM_178229	exon38	c.G4783T	p.D1595Y	GGAGATCCTAGGA	.	78.0	21.0	69.0	0.0	.	146	.	.	Atlas-SNP
ETV3	2117	hgsc.bcm.edu	hg19	1	157095521	157095521	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ETV3	NM_001145312	exon5	c.A651G	p.G217G	CCCTCCTCCACCA	.	144.0	6.0	84.0	0.0	.	50	.	.	Atlas-SNP
PYHIN1	149628	hgsc.bcm.edu	hg19	1	158908887	158908887	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PYHIN1	NM_152501	exon4	c.T429A	p.S143S	ACCATCTGAAGAA	.	149.0	50.0	130.0	0.0	.	208	.	.	Atlas-SNP
KLHL20	27252	hgsc.bcm.edu	hg19	1	173754356	173754356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KLHL20	NM_014458	exon12	c.A1801G	p.M601V	ATTAAAATGACAC	.	81.0	4.0	81.0	0.0	.	54	.	.	Atlas-SNP
TOR1AIP1	26092	hgsc.bcm.edu	hg19	1	179887172	179887172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TOR1AIP1	NM_001267578	exon10	c.A1553G	p.E518G	AGGAAGAGACACT	.	196.0	8.0	141.0	0.0	.	58	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	hg19	1	183095398	183095398	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LAMC1	NM_002293	exon16	c.2944+1G>T	.	GCAAACGTAAGGG	.	284.0	140.0	140.0	0.0	.	176	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204955096	204955096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NFASC	NM_001160331	exon21	c.A2678G	p.Q893R	AGAGACAGCAAGC	.	183.0	8.0	106.0	0.0	.	396	.	.	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205031113	205031113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNTN2	NM_005076	exon9	c.A1094G	p.E365G	ACGGGGAGCCTCT	.	145.0	6.0	85.0	0.0	.	116	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208270080	208270080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLXNA2	NM_025179	exon7	c.A1880G	p.D627G	CCTTGATCCAGCG	.	123.0	5.0	70.0	0.0	.	178	.	.	Atlas-SNP
INTS7	25896	hgsc.bcm.edu	hg19	1	212141249	212141249	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	INTS7	NM_015434	exon15	c.T2085C	p.A695A	TGAGTCAGCATCA	.	69.0	4.0	45.0	0.0	.	68	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237823324	237823324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RYR2	NM_001035	exon55	c.T8248C	p.S2750P	TCAGACTCTTCTA	.	114.0	6.0	90.0	0.0	.	1273	.	.	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	hg19	1	240978079	240978079	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RGS7	NM_002924	exon13	c.784-2A>G	.	TTTATCTGAAAAG	.	85.0	24.0	47.0	0.0	.	308	.	.	Atlas-SNP
TAF1B	9014	hgsc.bcm.edu	hg19	2	10045015	10045015	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	TAF1B,NS,carcinoma,0,1	TAF1B	NM_005680	exon9	c.A835T	p.K279X	ATCTACAAAAAAA	.	45.0	0.0	58.0	0.0	.	62	.	.	Atlas-SNP
SMC6	79677	hgsc.bcm.edu	hg19	2	17898050	17898050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMC6	NM_001142286	exon14	c.A1304G	p.Q435R	GCTTGCTGAAACT	.	142.0	6.0	190.0	0.0	.	102	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28855824	28855824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLB1	NM_153021	exon56	c.A4016G	p.D1339G	ACACTGACCTCAC	.	141.0	7.0	125.0	0.0	.	255	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32640568	32640568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BIRC6	NM_016252	exon10	c.A2209G	p.T737A	TCAATAACTCCTT	.	99.0	4.0	96.0	0.0	.	838	.	.	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	hg19	2	48010412	48010412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MSH6	NM_000179	exon1	c.T40C	p.S14P	CCCAAGTCTCCGG	.	93.0	4.0	83.0	0.0	.	341	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54850714	54850714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SPTBN1	NM_003128	exon10	c.T1163G	p.L388R	GGAAGCTCATCTC	.	126.0	56.0	137.0	0.0	.	378	.	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	hg19	2	55054765	55054765	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EML6	NM_001039753	exon5	c.T588C	p.D196D	AGGGGATCTTCAG	.	113.0	7.0	101.0	0.0	.	85	.	.	Atlas-SNP
EFEMP1	2202	hgsc.bcm.edu	hg19	2	56149567	56149567	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFEMP1	NM_001039349	exon2	c.A9G	p.K3K	AAGGGCTTTCAAC	.	124.0	5.0	91.0	0.0	.	81	.	.	Atlas-SNP
EHBP1	23301	hgsc.bcm.edu	hg19	2	63086343	63086343	+	Missense_Mutation	SNP	A	A	G	rs145562120	bycluster;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EHBP1	NM_015252	exon9	c.A779G	p.K260R	CAGAAAAGGACTT	.	89.0	4.0	99.0	0.0	.	127	.	A|1.000;C|0.000	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	hg19	2	67632364	67632364	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ETAA1	NM_019002	exon5	c.A2550G	p.T850T	AATTACACAGGGT	.	132.0	7.0	125.0	0.0	.	88	.	.	Atlas-SNP
NAGK	55577	hgsc.bcm.edu	hg19	2	71297898	71297898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NAGK	NM_017567	exon3	c.A280G	p.R94G	GTGGAGAGGATCA	.	107.0	5.0	100.0	0.0	.	34	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71908171	71908171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	DYSF_ENST00000410020,colon,carcinoma,0,2	DYSF	NM_001130987	exon54	c.A6104G	p.E2035G	AGAGTGAGCATGA	.	92.0	4.0	70.0	0.0	.	536	.	.	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	hg19	2	74600056	74600056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCTN1	NM_004082	exon7	c.A452G	p.K151R	CTCACCTTGGGTC	.	90.0	4.0	97.0	0.0	.	110	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84822906	84822906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH6	NM_001370	exon18	c.A2861G	p.K954R	AAATGAAAGAAAA	.	27.0	4.0	33.0	0.0	.	194	.	.	Atlas-SNP
PCDP1	0	hgsc.bcm.edu	hg19	2	120366133	120366133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001271049	exon12	c.G1189A	p.E397K	CTTACTGAAGAGT	.	100.0	4.0	84.0	0.0	.	.	.	.	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	hg19	2	128075251	128075251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MAP3K2	NM_006609	exon13	c.A1280G	p.D427G	TGGGGATCCCTCA	.	60.0	4.0	73.0	0.0	.	78	.	.	Atlas-SNP
GPR17	2840	hgsc.bcm.edu	hg19	2	128408877	128408877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR17	NM_005291	exon3	c.T652C	p.S218P	AAGGCCTCCCACC	.	112.0	5.0	77.0	0.0	.	56	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141457981	141457981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP1B	NM_018557	exon41	c.A6637G	p.R2213G	ATGGCCTTATTGG	.	93.0	5.0	119.0	0.0	.	1315	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162821621	162821621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC4A10	NM_001178015	exon23	c.A3097G	p.S1033G	GAACTCAGCTGGT	.	88.0	4.0	86.0	0.0	.	309	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168104144	168104144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XIRP2	NM_152381	exon9	c.G6242A	p.R2081K	TGAGCAGACAATT	.	158.0	71.0	155.0	0.0	.	914	.	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	hg19	2	179197376	179197376	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OSBPL6	NM_001201482	exon7	c.A381G	p.K127K	TCAGAAAGGAAAG	.	113.0	5.0	108.0	0.0	.	178	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185800820	185800820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF804A	NM_194250	exon4	c.T697C	p.F233L	GCAGCCTTCTCTG	.	120.0	5.0	115.0	0.0	.	322	.	.	Atlas-SNP
TFPI	7035	hgsc.bcm.edu	hg19	2	188348910	188348910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TFPI	NM_001032281	exon6	c.A569G	p.Q190R	TTGAGCTGGGTTC	.	91.0	4.0	81.0	0.0	.	66	.	.	Atlas-SNP
GTF3C3	9330	hgsc.bcm.edu	hg19	2	197664287	197664287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GTF3C3	NM_001206774	exon1	c.T49C	p.S17P	CAAAGGAGATTTT	.	100.0	4.0	94.0	0.0	.	96	.	.	Atlas-SNP
MPP4	58538	hgsc.bcm.edu	hg19	2	202514868	202514868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MPP4	NM_033066	exon19	c.A1402G	p.S468G	CGTAACTCTTTTT	.	93.0	4.0	77.0	0.0	.	93	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211523326	211523326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CPS1	NM_001122633	exon32	c.A3688G	p.K1230E	CAGGTGAAGGATG	.	91.0	4.0	61.0	0.0	.	485	.	.	Atlas-SNP
SLC23A3	151295	hgsc.bcm.edu	hg19	2	220028989	220028989	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC23A3	NM_001144890	exon9	c.T1263C	p.A421A	GAGCTGAGCCAAC	.	118.0	5.0	117.0	0.0	.	60	.	.	Atlas-SNP
TUBA4A	7277	hgsc.bcm.edu	hg19	2	220115976	220115976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TUBA4A	NM_006000	exon4	c.T445C	p.F149L	AGGTGAAGCCAGA	.	82.0	4.0	82.0	0.0	.	96	.	.	Atlas-SNP
GRM7	2917	hgsc.bcm.edu	hg19	3	7494418	7494418	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	GRM7,NS,carcinoma,0,1	GRM7	NM_000844	exon6	c.C1299T	p.Y433Y	TGACTACCGGGGT	.	109.0	0.0	114.0	0.0	.	223	.	.	Atlas-SNP
IL17RC	84818	hgsc.bcm.edu	hg19	3	9972089	9972089	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL17RC	NM_153461	exon15	c.A1497G	p.A499A	GAGGGCAGCTCGC	.	159.0	7.0	153.0	0.0	.	55	.	.	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12875342	12875342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CAND2	NM_001162499	exon15	c.T3572C	p.I1191T	TGACCATCCCCGA	.	140.0	7.0	124.0	0.0	.	138	.	.	Atlas-SNP
HACL1	26061	hgsc.bcm.edu	hg19	3	15613278	15613278	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.,1	HACL1	NM_012260	exon13	c.994-2A>G	.	AAAAGCTTAAAAA	.	39.0	3.0	31.0	0.0	.	33	.	.	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	hg19	3	31712394	31712394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	OSBPL10_ENST00000396556,extremity,malignant_melanoma,0,6	OSBPL10	NM_017784	exon9	c.C1808A	p.P603Q	ACCCACGGGATGG	.	176.0	0.0	175.0	0.0	.	160	.	.	Atlas-SNP
MAP4	4134	hgsc.bcm.edu	hg19	3	47960309	47960309	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MAP4	NM_001134364	exon6	c.T552C	p.A184A	TACAACAGCTGTG	.	107.0	5.0	90.0	0.0	.	176	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48628195	48628195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COL7A1	NM_000094	exon13	c.A1691G	p.D564G	TGAACGTCATCCA	.	124.0	5.0	108.0	0.0	.	320	.	.	Atlas-SNP
DCP1A	55802	hgsc.bcm.edu	hg19	3	53326495	53326495	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCP1A	NM_018403	exon7	c.A987T	p.A329A	AACCTGTGCAGTA	.	431.0	164.0	464.0	0.0	.	30	.	.	Atlas-SNP
IL17RB	55540	hgsc.bcm.edu	hg19	3	53899048	53899048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL17RB	NM_018725	exon11	c.T1222C	p.C408R	GGTACCTGTGGCA	.	114.0	5.0	121.0	0.0	.	27	.	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	hg19	3	99567249	99567249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	FILIP1L_ENST00000354552,NS,lymphoid_neoplasm,0,2	FILIP1L	NM_182909	exon5	c.C3271T	p.R1091X	GAGTTCGGTTATC	.	502.0	27.0	553.0	0.0	.	154	.	.	Atlas-SNP
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100569517	100569517	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABI3BP	NM_015429	exon14	c.A1287G	p.P429P	TGCCCTTGGCTGT	.	77.0	5.0	88.0	0.0	.	305	.	.	Atlas-SNP
TAGLN3	29114	hgsc.bcm.edu	hg19	3	111718279	111718279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TAGLN3	NM_001008272	exon2	c.A10G	p.R4G	GCTAACAGGGGCC	.	117.0	5.0	95.0	0.0	.	44	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113723571	113723571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA1407	NM_020817	exon11	c.A1891G	p.T631A	CTTCAGTCCCAGG	.	95.0	4.0	73.0	0.0	.	80	.	.	Atlas-SNP
ZNF80	7634	hgsc.bcm.edu	hg19	3	113955213	113955213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF80	NM_007136	exon1	c.A709G	p.R237G	GACTCCTTGTATG	.	97.0	4.0	106.0	0.0	.	75	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120976155	120976155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STXBP5L	NM_014980	exon17	c.A1807G	p.T603A	GGAGTAACAAAGG	.	91.0	4.0	94.0	0.0	.	159	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121413392	121413392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	GOLGB1,NS,carcinoma,0,1	GOLGB1	NM_001256486	exon13	c.A5978G	p.K1993R	TATTCCTTTCGTA	.	68.0	3.0	88.0	0.0	.	319	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122642473	122642473	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SEMA5B	NM_001256347	exon10	c.C1425T	p.P475P	GAAATTGGGGATG	.	93.0	5.0	82.0	0.0	.	303	.	.	Atlas-SNP
ZNF148	7707	hgsc.bcm.edu	hg19	3	124996586	124996586	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF148	NM_021964	exon7	c.T651C	p.H217H	CTTCTCATGTCTC	.	96.0	4.0	106.0	0.0	.	84	.	.	Atlas-SNP
DNAJB8	165721	hgsc.bcm.edu	hg19	3	128181700	128181700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJB8	NM_153330	exon3	c.T389C	p.L130P	CCCCTCAGGCCAT	.	86.0	4.0	70.0	0.0	.	34	.	.	Atlas-SNP
RPN1	6184	hgsc.bcm.edu	hg19	3	128356928	128356928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RPN1	NM_002950	exon3	c.A347G	p.K116R	GGGAGCTTGACTG	.	97.0	4.0	102.0	0.0	.	39	.	.	Atlas-SNP
U2SURP	23350	hgsc.bcm.edu	hg19	3	142733211	142733211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	U2SURP,rectum,carcinoma,0,1	U2SURP	NM_001080415	exon4	c.G281A	p.R94Q	CTAAGCGAACTTT	.	173.0	7.0	190.0	1.0	.	66	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	126.0	47.0	122.0	0.0	.	8460	.	.	Atlas-SNP
IGF2BP2	10644	hgsc.bcm.edu	hg19	3	185410534	185410534	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IGF2BP2	NM_001007225	exon5	c.A357G	p.E119E	GGCGGTTTCTGTG	.	113.0	5.0	115.0	0.0	.	69	.	.	Atlas-SNP
TNIP2	79155	hgsc.bcm.edu	hg19	4	2746449	2746449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNIP2	NM_024309	exon4	c.A881G	p.E294G	ACCCGCTCCAACG	.	60.0	4.0	39.0	0.0	.	28	.	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7730078	7730078	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SORCS2	NM_020777	exon22	c.T2871C	p.D957D	TCCAGATCAATTT	.	107.0	5.0	92.0	0.0	.	98	.	.	Atlas-SNP
NCAPG	64151	hgsc.bcm.edu	hg19	4	17839331	17839331	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NCAPG	NM_022346	exon16	c.T2373C	p.A791A	TTTAGCTGAAATT	.	80.0	4.0	68.0	0.0	.	76	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20547710	20547710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLIT2	NM_004787	exon22	c.A2333G	p.H778R	ACAAACATTTAAC	.	95.0	4.0	85.0	0.0	.	290	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22425934	22425934	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR125	NM_145290	exon11	c.G1485A	p.L495L	ATCAGCCAACATG	.	213.0	88.0	239.0	0.0	.	118	.	.	Atlas-SNP
GPR125	166647	hgsc.bcm.edu	hg19	4	22439915	22439915	+	Missense_Mutation	SNP	G	G	C	rs147843055	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	GPR125,colon,carcinoma,0,2	GPR125	NM_145290	exon8	c.C1049G	p.P350R	TCTGGAGGACAGT	.	221.0	0.0	252.0	0.0	.	118	.	.	Atlas-SNP
PI4K2B	55300	hgsc.bcm.edu	hg19	4	25256736	25256736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PI4K2B,NS,carcinoma,0,1	PI4K2B	NM_018323	exon3	c.T473C	p.L158P	GTCAACTCAATCC	.	94.0	4.0	71.0	1.0	.	42	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54256722	54256722	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FIP1L1	NM_030917	exon7	c.T432C	p.P144P	TGCACCTGGAAGC	.	88.0	4.0	101.0	0.0	.	60	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55565812	55565812	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIT	NM_000222	exon4	c.T636C	p.P212P	TGTGCCTGTTGTG	.	104.0	5.0	83.0	0.0	.	7396	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74277806	74277806	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ALB	NM_000477	exon7	c.C807T	p.C269C	GGAATGCTGCCAT	.	123.0	5.0	109.0	0.0	.	132	.	.	Atlas-SNP
MTHFD2L	441024	hgsc.bcm.edu	hg19	4	75147266	75147266	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MTHFD2L	NM_001144978	exon7	c.A930G	p.E310E	CTTCGAAGGTAAT	.	84.0	4.0	72.0	0.0	.	41	.	.	Atlas-SNP
CNOT6L	246175	hgsc.bcm.edu	hg19	4	78697513	78697513	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNOT6L	NM_144571	exon2	c.T39C	p.P13P	ATCTGGAGGATCA	.	125.0	5.0	97.0	0.0	.	57	.	.	Atlas-SNP
HNRNPD	3184	hgsc.bcm.edu	hg19	4	83280683	83280683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HNRNPD	NM_031370	exon3	c.A400G	p.T134A	GCCCTGTGATAGG	.	100.0	4.0	110.0	0.0	.	23	.	.	Atlas-SNP
FAM13A	10144	hgsc.bcm.edu	hg19	4	89652508	89652508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM13A	NM_014883	exon23	c.T2915G	p.F972C	TCTTCAAAATCCC	.	25.0	8.0	39.0	0.0	.	181	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90170622	90170622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPRIN3	NM_198281	exon2	c.T640C	p.S214P	CAGGAGAGGATGA	.	78.0	5.0	73.0	0.0	.	90	.	.	Atlas-SNP
RAP1GDS1	5910	hgsc.bcm.edu	hg19	4	99342470	99342470	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAP1GDS1	NM_001100426	exon12	c.A1368G	p.E456E	GTGTGAAGCCAAA	.	96.0	4.0	104.0	0.0	.	61	.	.	Atlas-SNP
PPP3CA	5530	hgsc.bcm.edu	hg19	4	101953446	101953446	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP3CA	NM_000944	exon12	c.A1317G	p.G439G	CTTCCCTCCAGAA	.	172.0	7.0	113.0	0.0	.	51	.	.	Atlas-SNP
BANK1	55024	hgsc.bcm.edu	hg19	4	102751252	102751252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BANK1	NM_017935	exon2	c.A358G	p.S120G	GTGAAGAGTTCAG	.	81.0	4.0	92.0	0.0	.	95	.	.	Atlas-SNP
COL25A1	84570	hgsc.bcm.edu	hg19	4	109895542	109895542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	COL25A1_ENST00000399126,NS,carcinoma,0,2	COL25A1	NM_198721	exon7	c.A473G	p.Q158R	TCACCTTGTTCTC	.	68.0	3.0	109.0	0.0	.	178	.	.	Atlas-SNP
CASP6	839	hgsc.bcm.edu	hg19	4	110617568	110617568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CASP6	NM_001226	exon4	c.A305G	p.E102G	CTACCCTCATGAA	.	54.0	4.0	65.0	0.0	.	25	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115858629	115858629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NDST4	NM_022569	exon5	c.G1252T	p.A418S	CCACAGCATAGCC	.	267.0	96.0	254.0	0.0	.	193	.	.	Atlas-SNP
LARP1B	55132	hgsc.bcm.edu	hg19	4	129028308	129028308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LARP1B	NM_032239	exon9	c.C828A	p.S276R	GGATAGCACAGAA	.	111.0	47.0	123.0	0.0	.	120	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	167020635	167020635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TLL1	NM_012464	exon20	c.C2863G	p.L955V	GATGGTCTTGATT	.	290.0	104.0	266.0	0.0	.	194	.	.	Atlas-SNP
MED10	84246	hgsc.bcm.edu	hg19	5	6374436	6374436	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED10	NM_032286	exon4	c.309+1G>A	.	GTCTTACCTTCAT	.	264.0	58.0	186.0	0.0	.	7	.	.	Atlas-SNP
IL7R	3575	hgsc.bcm.edu	hg19	5	35867499	35867499	+	Missense_Mutation	SNP	A	A	G	rs199742437	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL7R	NM_002185	exon3	c.A313G	p.S105G	GGAAAGAGCAATA	.	100.0	26.0	70.0	0.0	.	200	.	.	Atlas-SNP
PLCXD3	345557	hgsc.bcm.edu	hg19	5	41382499	41382499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLCXD3	NM_001005473	exon2	c.A241G	p.T81A	TCATTGTCTGAGT	.	121.0	5.0	70.0	0.0	.	86	.	.	Atlas-SNP
GHR	2690	hgsc.bcm.edu	hg19	5	42713594	42713594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GHR	NM_001242399	exon8	c.T869C	p.F290S	TGCTATTTGTATT	.	88.0	4.0	56.0	0.0	.	94	.	.	Atlas-SNP
CCDC125	202243	hgsc.bcm.edu	hg19	5	68578778	68578778	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC125	NM_176816	exon11	c.T1314C	p.A438A	GTTTGAAGCAGTG	.	117.0	6.0	91.0	0.0	.	41	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134121198	134121198	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DDX46	NM_014829	exon11	c.T1386A	p.T462T	GATTACTAAAGAG	.	167.0	34.0	156.0	0.0	.	77	.	.	Atlas-SNP
PKD2L2	27039	hgsc.bcm.edu	hg19	5	137257346	137257346	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PKD2L2	NM_014386	exon9	c.T1350C	p.V450V	AATTGTTCTTGGA	.	121.0	5.0	114.0	0.0	.	68	.	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	hg19	5	137727543	137727543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KDM3B	NM_016604	exon8	c.T2222C	p.L741P	CAACTCTCTCCTC	.	89.0	4.0	52.0	0.0	.	177	.	.	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140627100	140627100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PCDHB15	NM_018935	exon1	c.C1954T	p.R652C	CCTCCGCGCTCGG	.	95.0	4.0	65.0	0.0	.	138	.	.	Atlas-SNP
G3BP1	10146	hgsc.bcm.edu	hg19	5	151179526	151179526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	G3BP1,rectum,carcinoma,0,1	G3BP1	NM_005754	exon9	c.G920A	p.R307Q	AACAACGAATAAA	.	158.0	9.0	105.0	1.0	.	53	.	.	Atlas-SNP
GABRB2	2561	hgsc.bcm.edu	hg19	5	160763717	160763717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GABRB2	NM_021911	exon7	c.G601A	p.G201R	TTACTCCTGTTAC	.	78.0	4.0	70.0	0.0	.	161	.	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	hg19	5	172752906	172752906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STC2	NM_003714	exon2	c.A259G	p.T87A	GAAAAGTCATGCA	.	131.0	6.0	73.0	0.0	.	59	.	.	Atlas-SNP
CANX	821	hgsc.bcm.edu	hg19	5	179133285	179133285	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CANX	NM_001746	exon3	c.A198G	p.T66T	TCCAACAGGGGAA	.	64.0	4.0	60.0	0.0	.	47	.	.	Atlas-SNP
MAML1	9794	hgsc.bcm.edu	hg19	5	179193646	179193646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MAML1	NM_014757	exon2	c.G1635T	p.Q545H	TCCCCAGCAGCTG	.	83.0	4.0	76.0	0.0	.	118	.	.	Atlas-SNP
FAM8A1	51439	hgsc.bcm.edu	hg19	6	17601073	17601073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM8A1	NM_016255	exon1	c.C433T	p.Q145X	AGCCCCCAGCCCT	.	70.0	28.0	44.0	0.0	.	26	.	.	Atlas-SNP
KDM1B	221656	hgsc.bcm.edu	hg19	6	18166515	18166515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KDM1B	NM_153042	exon6	c.A323G	p.D108G	GATATGACAAATA	.	87.0	5.0	87.0	0.0	.	58	.	.	Atlas-SNP
ZNF322	79692	hgsc.bcm.edu	hg19	6	26638586	26638586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001242797	exon5	c.A196G	p.T66A	CCCCAGTATGGGT	.	397.0	92.0	390.0	0.0	.	.	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32188846	32188846	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NOTCH4	NM_004557	exon4	c.A708G	p.G236G	GCAGGGTCCTGCC	.	92.0	4.0	76.0	0.0	.	201	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33141808	33141808	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COL11A2	NM_080680	exon33	c.C2509A	p.R837R	CTCCCCGAGGCCC	.	187.0	67.0	158.0	0.0	.	124	.	.	Atlas-SNP
C6orf89	221477	hgsc.bcm.edu	hg19	6	36882066	36882066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C6orf89	NM_152734	exon4	c.A431G	p.D144G	ACTTTGACCCCTG	.	88.0	4.0	80.0	0.0	.	39	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38874140	38874140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH8	NM_001206927	exon63	c.A9305G	p.E3102G	AAGATGAGGCATT	.	147.0	6.0	169.0	0.0	.	1239	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46661339	46661339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	TDRD6,NS,carcinoma,+1,1	TDRD6	NM_001168359	exon1	c.A5474G	p.E1825G	CTAATGAAACAAA	.	41.0	2.0	34.0	0.0	.	205	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	70065719	70065719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BAI3	NM_001704	exon28	c.T3562C	p.F1188L	ACAGACTTTGAAA	.	60.0	4.0	74.0	0.0	.	451	.	.	Atlas-SNP
GABRR1	2569	hgsc.bcm.edu	hg19	6	89890138	89890138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GABRR1	NM_002042	exon9	c.A1019G	p.Y340C	TTGATGTAGGAGA	.	93.0	4.0	106.0	0.0	.	63	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90513153	90513153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MDN1	NM_014611	exon2	c.A223G	p.R75G	CATTCCTTTCCAG	.	58.0	4.0	100.0	0.0	.	478	.	.	Atlas-SNP
OSTM1	28962	hgsc.bcm.edu	hg19	6	108375753	108375753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	OSTM1,NS,carcinoma,0,1	OSTM1	NM_014028	exon3	c.A556G	p.T186A	ATACTGTGCTGTT	.	30.0	2.0	49.0	0.0	.	22	.	.	Atlas-SNP
TSPYL4	23270	hgsc.bcm.edu	hg19	6	116574326	116574326	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TSPYL4	NM_021648	exon1	c.G846A	p.L282L	CACCTCCAAATTG	.	69.0	4.0	112.0	0.0	.	18	.	.	Atlas-SNP
BET3L	100128327	hgsc.bcm.edu	hg19	6	116818183	116818183	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BET3L	NM_001139444	exon5	c.T480C	p.S160S	TGTCACACTGTCA	.	68.0	4.0	127.0	0.0	.	18	.	.	Atlas-SNP
RFX6	222546	hgsc.bcm.edu	hg19	6	117198525	117198525	+	Silent	SNP	T	T	C	rs368582780		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RFX6	NM_173560	exon1	c.T87C	p.C29C	CTGCTGTGTGCAG	.	91.0	5.0	91.0	0.0	.	141	.	.	Atlas-SNP
NCOA7	135112	hgsc.bcm.edu	hg19	6	126203615	126203615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NCOA7	NM_001199619	exon8	c.T617C	p.V206A	AAAGAGTCTTATC	.	50.0	5.0	57.0	0.0	.	92	.	.	Atlas-SNP
MAP3K5	4217	hgsc.bcm.edu	hg19	6	136878915	136878915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MAP3K5	NM_005923	exon30	c.T4106C	p.F1369S	TTTCGAAAGTCAA	.	71.0	4.0	93.0	0.0	.	136	.	.	Atlas-SNP
RAB32	10981	hgsc.bcm.edu	hg19	6	146875606	146875606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAB32	NM_006834	exon3	c.A543G	p.I181M	AAACATAGAGGAA	.	62.0	37.0	86.0	0.0	.	16	.	.	Atlas-SNP
NUP43	348995	hgsc.bcm.edu	hg19	6	150059861	150059861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NUP43	NM_198887	exon5	c.A556G	p.I186V	TAAGAATCTCAGG	.	58.0	4.0	72.0	0.0	.	32	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151144808	151144808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLEKHG1	NM_001029884	exon15	c.A1466G	p.Q489R	ACATCCAAAAGGT	.	31.0	16.0	54.0	0.0	.	97	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151152053	151152053	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PLEKHG1	NM_001029884	exon16	c.T1806C	p.G602G	CTCTGGTCACAGG	.	55.0	4.0	76.0	0.0	.	97	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	161016501	161016501	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LPA	NM_005577	exon22	c.T3354C	p.D1118D	ACTGGGATCCATG	.	86.0	4.0	151.0	0.0	.	237	.	.	Atlas-SNP
SMOC2	64094	hgsc.bcm.edu	hg19	6	168944304	168944304	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	SMOC2,NS,carcinoma,0,1	SMOC2	NM_022138	exon5	c.464-1G>T	.	CTTTTAGGTTCCG	.	28.0	2.0	61.0	0.0	.	57	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11446083	11446083	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THSD7A	NM_015204	exon21	c.G4081C	p.G1361R	TGGTCCCTTCTCC	.	242.0	84.0	193.0	0.0	.	219	.	.	Atlas-SNP
HIBADH	11112	hgsc.bcm.edu	hg19	7	27672029	27672029	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HIBADH	NM_152740	exon3	c.T288C	p.A96A	TCTGTCAGCTTTT	.	82.0	4.0	69.0	0.0	.	28	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38431545	38431545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AMPH	NM_001635	exon19	c.T1682C	p.I561T	GCACCTATAGTTA	.	106.0	5.0	107.0	0.0	.	157	.	.	Atlas-SNP
POLM	27434	hgsc.bcm.edu	hg19	7	44119318	44119318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	POLM,NS,carcinoma,0,1	POLM	NM_013284	exon4	c.A494G	p.E165G	GCTGCCTCGGCCA	.	68.0	3.0	47.0	0.0	.	50	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48318670	48318670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ABCA13	NM_152701	exon18	c.C7879A	p.Q2627K	ATGAACCAATCTA	.	54.0	20.0	63.0	0.0	.	1192	.	.	Atlas-SNP
ZNF679	168417	hgsc.bcm.edu	hg19	7	63727165	63727165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF679	NM_153363	exon5	c.G1154A	p.C385Y	AAGAATGTGACAA	.	40.0	4.0	38.0	0.0	.	80	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75174427	75174427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HIP1	NM_005338	exon26	c.C2619G	p.I873M	GGCTGAGATAAGT	.	60.0	24.0	78.0	0.0	.	91	.	.	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	hg19	7	76866342	76866342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC146	NM_020879	exon3	c.A235G	p.M79V	GCCGTGATGAGGT	.	98.0	4.0	102.0	0.0	.	87	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77551975	77551975	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PHTF2	NM_001127359	exon9	c.A897G	p.E299E	TGATGAAGTCTCC	.	90.0	4.0	92.0	0.0	.	104	.	.	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	hg19	7	92123943	92123943	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PEX1	NM_000466	exon18	c.A2784G	p.R928R	CTGTGCTCTGGGA	.	83.0	4.0	84.0	0.0	.	102	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94056343	94056343	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COL1A2	NM_000089	exon47	c.T3129C	p.A1043A	AGGTGCTCCTGGC	.	91.0	5.0	88.0	0.0	.	240	.	.	Atlas-SNP
CASD1	64921	hgsc.bcm.edu	hg19	7	94164818	94164818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CASD1	NM_022900	exon8	c.G826C	p.E276Q	CTTCCTGAATCGA	.	192.0	77.0	190.0	0.0	.	70	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99091412	99091412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF394	NM_032164	exon3	c.A1426G	p.K476E	AGCTCTTCTCGCA	.	219.0	68.0	187.0	0.0	.	48	.	.	Atlas-SNP
TRIM4	89122	hgsc.bcm.edu	hg19	7	99500933	99500933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIM4	NM_033017	exon6	c.A827G	p.E276G	TGGATCTCACTCC	.	85.0	4.0	89.0	0.0	.	33	.	.	Atlas-SNP
TAF6	6878	hgsc.bcm.edu	hg19	7	99711537	99711537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TAF6	NM_001190415	exon3	c.T308C	p.L103P	GTGGTGAGCTTCT	.	147.0	6.0	152.0	0.0	.	55	.	.	Atlas-SNP
STAG3	10734	hgsc.bcm.edu	hg19	7	99808723	99808723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STAG3	NM_012447	exon30	c.T3328C	p.S1110P	CTCACCTCCACAG	.	113.0	7.0	86.0	0.0	.	121	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100680430	100680430	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MUC17	NM_001040105	exon3	c.T5733C	p.A1911A	AACTGCTGACGGT	.	97.0	4.0	130.0	0.0	.	804	.	.	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	hg19	7	101840321	101840321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CUX1	NM_001202543	exon15	c.A1663G	p.S555G	GCTGGGAGCGTCT	.	80.0	4.0	50.0	0.0	.	253	.	.	Atlas-SNP
DNAJC2	27000	hgsc.bcm.edu	hg19	7	102957429	102957429	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJC2	NM_014377	exon13	c.G1275A	p.E425E	CTCTTTCTCTTTT	.	232.0	89.0	280.0	1.0	.	46	.	.	Atlas-SNP
PRRT4	401399	hgsc.bcm.edu	hg19	7	127991409	127991409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRRT4	NM_001174164	exon6	c.A2201G	p.E734G	AGGGCCTCCTCGA	.	86.0	4.0	56.0	0.0	.	31	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128445476	128445476	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC136	NM_001201372	exon7	c.T960C	p.S320S	AGAGTCTCAGACT	.	86.0	4.0	70.0	0.0	.	170	.	.	Atlas-SNP
CPA5	93979	hgsc.bcm.edu	hg19	7	130007288	130007288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CPA5	NM_080385	exon11	c.C914T	p.A305V	TGGCTGCCATAGT	.	299.0	91.0	269.0	0.0	.	61	.	.	Atlas-SNP
WDR91	29062	hgsc.bcm.edu	hg19	7	134870994	134870994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	WDR91	NM_014149	exon15	c.A2153G	p.D718G	CTCCAGTCCACGG	.	117.0	5.0	98.0	0.0	.	82	.	.	Atlas-SNP
CREB3L2	64764	hgsc.bcm.edu	hg19	7	137586166	137586166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CREB3L2	NM_194071	exon8	c.T977C	p.V326A	GACTCCACTCTAC	.	89.0	5.0	77.0	0.0	.	62	.	.	Atlas-SNP
UBN2	254048	hgsc.bcm.edu	hg19	7	138944069	138944069	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UBN2	NM_173569	exon5	c.A858G	p.E286E	AGAGGAAGGGGAA	.	86.0	5.0	100.0	0.0	.	90	.	.	Atlas-SNP
GIMAP4	55303	hgsc.bcm.edu	hg19	7	150269812	150269812	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GIMAP4	NM_018326	exon3	c.A654G	p.E218E	CAAGGAAGGCTGC	.	134.0	7.0	90.0	0.0	.	61	.	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	hg19	7	150704003	150704003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NOS3	NM_000603	exon16	c.T1847C	p.I616T	ACAGCATCTCCTG	.	207.0	9.0	189.0	0.0	.	131	.	.	Atlas-SNP
CHPF2	54480	hgsc.bcm.edu	hg19	7	150935431	150935431	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHPF2	NM_019015	exon4	c.G1983C	p.G661G	TATAGGGGGGAGA	.	88.0	4.0	71.0	0.0	.	52	.	.	Atlas-SNP
SMARCD3	6604	hgsc.bcm.edu	hg19	7	150939255	150939255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMARCD3	NM_001003801	exon6	c.G643A	p.D215N	AAAGATCTTTGTC	.	124.0	5.0	99.0	0.0	.	92	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151919143	151919143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MLL3	NM_170606	exon22	c.T3442C	p.S1148P	AGTCTGAGGAAGG	.	63.0	4.0	76.0	0.0	.	1564	.	.	Atlas-SNP
DEFA4	1669	hgsc.bcm.edu	hg19	8	6794324	6794324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DEFA4	NM_001925	exon2	c.A98G	p.E33G	CGCTGCTCCTGGC	.	118.0	5.0	74.0	0.0	.	19	.	.	Atlas-SNP
XPO7	23039	hgsc.bcm.edu	hg19	8	21848320	21848320	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XPO7	NM_015024	exon18	c.1933-2A>G	.	TTCAATAGAGCGA	.	112.0	5.0	56.0	0.0	.	79	.	.	Atlas-SNP
NEFM	4741	hgsc.bcm.edu	hg19	8	24775101	24775101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NEFM	NM_005382	exon3	c.A1733G	p.E578G	AAGGAGAGGAAGC	.	105.0	5.0	107.0	0.0	.	115	.	.	Atlas-SNP
NUGGC	389643	hgsc.bcm.edu	hg19	8	27887829	27887829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001010906	exon16	c.A2015G	p.E672G	CCACCTTCGTAAC	.	95.0	4.0	49.0	0.0	.	.	.	.	Atlas-SNP
ZNF395	55893	hgsc.bcm.edu	hg19	8	28210089	28210089	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF395	NM_018660	exon7	c.920+1G>A	.	CACATACCCCAGA	.	106.0	31.0	51.0	0.0	.	54	.	.	Atlas-SNP
FUT10	84750	hgsc.bcm.edu	hg19	8	33230111	33230111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FUT10	NM_032664	exon5	c.T1424C	p.L475P	AATACTAGGCCCC	.	140.0	6.0	121.0	0.0	.	62	.	.	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33358008	33358008	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001265581	exon7	c.A1260G	p.R420R	GGAAACTCTGGAA	.	92.0	6.0	70.0	0.0	.	.	.	.	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	hg19	8	39091581	39091581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ADAM32	NM_145004	exon16	c.T1798C	p.S600P	AATGGCTCTCAGT	.	81.0	4.0	69.0	0.0	.	70	.	.	Atlas-SNP
IDO2	169355	hgsc.bcm.edu	hg19	8	39836687	39836687	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IDO2	NM_194294	exon4	c.A336G	p.G112G	GGAAGGAGAGGCG	.	128.0	6.0	62.0	0.0	.	78	.	.	Atlas-SNP
CHRNA6	8973	hgsc.bcm.edu	hg19	8	42611844	42611844	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHRNA6	NM_004198	exon5	c.T498C	p.P166P	ATCAAAAGGGAAA	.	94.0	4.0	74.0	0.0	.	60	.	.	Atlas-SNP
THAP1	55145	hgsc.bcm.edu	hg19	8	42693397	42693397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	THAP1	NM_018105	exon3	c.G350T	p.G117V	AGTAATCCAATAG	.	124.0	66.0	135.0	0.0	.	18	.	.	Atlas-SNP
GDAP1	54332	hgsc.bcm.edu	hg19	8	75262703	75262703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	GDAP1,ear,malignant_melanoma,0,1	GDAP1	NM_018972	exon1	c.G7A	p.E3K	ATGGCTGAGAGGC	.	50.0	2.0	47.0	0.0	.	36	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617351	77617351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFHX4	NM_024721	exon2	c.C1028T	p.S343F	CCACTTCTGTTTA	.	64.0	5.0	57.0	0.0	.	878	.	.	Atlas-SNP
RAD54B	25788	hgsc.bcm.edu	hg19	8	95384468	95384468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAD54B	NM_012415	exon15	c.T2663C	p.F888S	TCAAGAAAAGGAT	.	92.0	4.0	76.0	0.0	.	88	.	.	Atlas-SNP
FSBP	100861412	hgsc.bcm.edu	hg19	8	95449096	95449096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FSBP	NM_001256141	exon1	c.A1G	p.M1V	CTACCATTGTTCT	.	189.0	50.0	143.0	0.0	.	1	.	.	Atlas-SNP
SPAG1	6674	hgsc.bcm.edu	hg19	8	101252681	101252681	+	Missense_Mutation	SNP	G	G	C	rs150966245	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	SPAG1,pharynx,carcinoma,0,1	SPAG1	NM_003114	exon18	c.G2331C	p.M777I	CTCCATGGGATGC	.	91.0	0.0	65.0	0.0	.	80	.	G|0.997;A|0.003	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	hg19	8	105503084	105503084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRP12	NM_013437	exon7	c.C2397T	p.A799A	ATCTGAGGCAAGA	.	159.0	37.0	131.0	0.0	.	124	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113585826	113585826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CSMD3_ENST00000343508,NS,carcinoma,0,2	CSMD3	NM_198123	exon24	c.C3946A	p.R1316S	GTCCGCGCATAGA	.	131.0	34.0	116.0	0.0	.	2325	.	.	Atlas-SNP
RNF139	11236	hgsc.bcm.edu	hg19	8	125498418	125498418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF139	NM_007218	exon2	c.G528T	p.E176D	CAGAGAGACTTTA	.	192.0	104.0	120.0	0.0	.	57	.	.	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	hg19	8	143996601	143996601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CYP11B2	NM_000498	exon3	c.G456C	p.K152N	CACGGCCTTGGGC	.	294.0	23.0	194.0	0.0	.	107	.	.	Atlas-SNP
COMMD5	28991	hgsc.bcm.edu	hg19	8	146076709	146076709	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	COMMD5,colon,carcinoma,0,2	COMMD5	NM_001081004	exon2	c.G15A	p.G5G	TGCAGCCCCCACA	.	386.0	0.0	249.0	0.0	.	18	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	334272	334272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK8	NM_203447	exon11	c.C1173G	p.C391W	CTTCTGCCAGCGT	.	118.0	5.0	86.0	0.0	.	401	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	713074	713074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KANK1	NM_001256876	exon7	c.T2308C	p.Y770H	GACAACTATCTGG	.	106.0	40.0	109.0	0.0	.	231	.	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	hg19	9	20620823	20620823	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MLLT3	NM_004529	exon2	c.A23C	p.Q8P	TTCACCTGCACGG	.	84.0	5.0	71.0	0.0	.	125	.	.	Atlas-SNP
DDX58	23586	hgsc.bcm.edu	hg19	9	32466317	32466317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DDX58	NM_014314	exon16	c.A2308G	p.T770A	CCCATGTCTGAAG	.	110.0	5.0	115.0	0.0	.	82	.	.	Atlas-SNP
FXN	2395	hgsc.bcm.edu	hg19	9	71661353	71661353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FXN	NM_000144	exon2	c.T218C	p.V73A	AGAGTGTCTATTT	.	115.0	5.0	105.0	0.0	.	9	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79321218	79321218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRUNE2	NM_015225	exon8	c.A5972G	p.E1991G	TGACCTTCATTAG	.	87.0	4.0	99.0	0.0	.	331	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79322807	79322807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRUNE2	NM_015225	exon8	c.G4383A	p.K1461K	AAGATCCTTTTCA	.	160.0	45.0	141.0	0.0	.	331	.	.	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	hg19	9	90501957	90501957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_178828	exon4	c.T2555C	p.L852P	CAGACCTCCAGTC	.	111.0	7.0	67.0	0.0	.	.	.	.	Atlas-SNP
NFIL3	4783	hgsc.bcm.edu	hg19	9	94171681	94171681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NFIL3	NM_005384	exon2	c.T1336C	p.S446P	TGAGTGAGACAAC	.	206.0	9.0	203.0	0.0	.	43	.	.	Atlas-SNP
SMC2	10592	hgsc.bcm.edu	hg19	9	106896730	106896730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMC2	NM_006444	exon23	c.T3143C	p.L1048P	CTACTCTTTTGCC	.	117.0	5.0	98.0	0.0	.	127	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114213757	114213757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0368	NM_001080398	exon4	c.T635C	p.L212P	GGAGGAAGGAATT	.	60.0	4.0	101.0	0.0	.	144	.	.	Atlas-SNP
DFNB31	25861	hgsc.bcm.edu	hg19	9	117186678	117186678	+	Missense_Mutation	SNP	C	C	G	rs117352600	bycluster;by1000genomes;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	DFNB31,NS,carcinoma,0,1	DFNB31	NM_001173425	exon6	c.G1352C	p.G451A	CTGCCACCACGGT	.	235.0	0.0	198.0	0.0	.	100	.	C|0.997;T|0.003	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	hg19	9	119976991	119976991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ASTN2,right_upper_lobe,carcinoma,+2,1	ASTN2	NM_014010	exon3	c.C661G	p.L221V	ACACCAGCAGCAG	.	83.0	4.0	61.0	0.0	.	307	.	.	Atlas-SNP
GOLGA2	2801	hgsc.bcm.edu	hg19	9	131022366	131022366	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GOLGA2	NM_004486	exon18	c.C1780T	p.L594L	CCTTCAGCTCGCT	.	40.0	8.0	33.0	0.0	.	69	.	.	Atlas-SNP
PPAPDC3	84814	hgsc.bcm.edu	hg19	9	134183331	134183331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPAPDC3	NM_032728	exon2	c.C473T	p.T158M	TCATGACGGTGGC	.	31.0	9.0	11.0	0.0	.	24	.	.	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134497361	134497361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAPGEF1	NM_198679	exon11	c.A1730G	p.E577G	TAGTCCTCCAGCA	.	215.0	9.0	167.0	0.0	.	126	.	.	Atlas-SNP
SOHLH1	402381	hgsc.bcm.edu	hg19	9	138590847	138590847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SOHLH1	NM_001012415	exon2	c.A191G	p.E64G	CTGCGCTCCCTCT	.	171.0	7.0	109.0	0.0	.	70	.	.	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	hg19	9	139232412	139232412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPSM1	NM_015597	exon6	c.A812G	p.Y271C	CCGAGTACTACAA	.	99.0	4.0	61.0	0.0	.	50	.	.	Atlas-SNP
NET1	10276	hgsc.bcm.edu	hg19	10	5496244	5496244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NET1	NM_001047160	exon9	c.C785T	p.A262V	TGAATGCCTACAG	.	82.0	4.0	108.0	0.0	.	82	.	.	Atlas-SNP
NSUN6	221078	hgsc.bcm.edu	hg19	10	18937549	18937549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NSUN6	NM_182543	exon2	c.A101G	p.E34G	TCTGCTTCTTGTT	.	97.0	4.0	111.0	0.0	.	46	.	.	Atlas-SNP
TMEM72	643236	hgsc.bcm.edu	hg19	10	45429185	45429185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMEM72	NM_001123376	exon4	c.T310C	p.F104L	GCCTGCTTCCTCC	.	142.0	6.0	108.0	0.0	.	25	.	.	Atlas-SNP
ZNF488	118738	hgsc.bcm.edu	hg19	10	48371474	48371474	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF488	NM_153034	exon2	c.A942G	p.E314E	GAGAGAAGAGGCC	.	95.0	4.0	55.0	0.0	.	38	.	.	Atlas-SNP
SGMS1	259230	hgsc.bcm.edu	hg19	10	52087035	52087035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SGMS1	NM_147156	exon8	c.T671C	p.L224P	CGATACAGGTACA	.	112.0	5.0	91.0	0.0	.	40	.	.	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	hg19	10	60549107	60549107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BICC1	NM_001080512	exon7	c.A686G	p.Q229R	CTATTCAGCATAT	.	175.0	8.0	202.0	0.0	.	121	.	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	hg19	10	73767842	73767842	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHST3	NM_004273	exon3	c.C1053T	p.S351S	CCTGTCCGCGGAG	.	39.0	19.0	28.0	0.0	.	36	.	.	Atlas-SNP
IFIT1B	439996	hgsc.bcm.edu	hg19	10	91144454	91144454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IFIT1B	NM_001010987	exon2	c.A1384G	p.R462G	TATGAGAGGGCTC	.	134.0	6.0	105.0	0.0	.	39	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91522426	91522426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIF20B	NM_016195	exon29	c.T4703C	p.V1568A	GTGAAGTGTCAAC	.	86.0	4.0	91.0	0.0	.	191	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91522431	91522431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIF20B	NM_016195	exon29	c.A4708G	p.T1570A	GTGTCAACAGAAA	.	91.0	4.0	95.0	0.0	.	191	.	.	Atlas-SNP
TNKS2	80351	hgsc.bcm.edu	hg19	10	93609348	93609348	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNKS2	NM_025235	exon20	c.A2691G	p.E897E	GAGAGAACAGGTG	.	71.0	4.0	104.0	0.0	.	103	.	.	Atlas-SNP
TLX1NB	100038246	hgsc.bcm.edu	hg19	10	102849600	102849600	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001085398	exon3	c.T63C	p.S21S	AAGGAGAGAGTGC	.	78.0	4.0	75.0	0.0	.	.	.	.	Atlas-SNP
USMG5	84833	hgsc.bcm.edu	hg19	10	105152185	105152185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USMG5	NM_001206427	exon3	c.C30A	p.Y10X	GAACTGGTATTGC	.	117.0	6.0	98.0	0.0	.	5	.	.	Atlas-SNP
CUZD1	50624	hgsc.bcm.edu	hg19	10	124593456	124593456	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CUZD1	NM_022034	exon8	c.A1383G	p.G461G	ACTACATCTGGAA	.	144.0	7.0	121.0	0.0	.	82	.	.	Atlas-SNP
PSTK	118672	hgsc.bcm.edu	hg19	10	124742793	124742793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PSTK,NS,lymphoid_neoplasm,0,1	PSTK	NM_153336	exon3	c.T514A	p.L172M	GATTCGTTGGGCT	.	96.0	0.0	109.0	0.0	.	34	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129899525	129899525	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MKI67	NM_002417	exon14	c.G9702A	p.K3234K	TACCTTCTTTGGA	.	103.0	5.0	77.0	0.0	.	363	.	.	Atlas-SNP
LRRC27	80313	hgsc.bcm.edu	hg19	10	134151182	134151182	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LRRC27	NM_001143757	exon3	c.T324C	p.S108S	TCCTTCTGGGATT	.	104.0	5.0	85.0	0.0	.	64	.	.	Atlas-SNP
BET1L	51272	hgsc.bcm.edu	hg19	11	205324	205324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BET1L	NM_001098787	exon4	c.T314C	p.F105S	GACAAGAAGTAGG	.	123.0	5.0	97.0	0.0	.	7	.	.	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	hg19	11	3249741	3249741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MRGPRE	NM_001039165	exon2	c.A289G	p.T97A	GGCTGGTCTGCAC	.	134.0	6.0	73.0	0.0	.	35	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6412065	6412065	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMPD1	NM_000543	exon1	c.G237A	p.R79R	GCCCCGGCTCCGA	.	89.0	23.0	88.0	0.0	.	108	.	.	Atlas-SNP
RBMXL2	27288	hgsc.bcm.edu	hg19	11	7111267	7111267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBMXL2	NM_014469	exon1	c.G916T	p.G306C	GGAGGAGGCCGCT	.	109.0	48.0	86.0	0.0	.	47	.	.	Atlas-SNP
SCUBE2	57758	hgsc.bcm.edu	hg19	11	9052315	9052315	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCUBE2	NM_020974	exon17	c.T2160C	p.C720C	GGTTTCACAGTCC	.	58.0	4.0	64.0	0.0	.	102	.	.	Atlas-SNP
SCUBE2	57758	hgsc.bcm.edu	hg19	11	9082018	9082018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCUBE2	NM_001170690	exon8	c.A904G	p.T302A	CACCTGTCGAAGT	.	87.0	6.0	72.0	0.0	.	102	.	.	Atlas-SNP
WEE1	7465	hgsc.bcm.edu	hg19	11	9598196	9598196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	WEE1	NM_003390	exon4	c.T1009C	p.S337P	GCGGGCTCTGTTG	.	149.0	6.0	157.0	0.0	.	54	.	.	Atlas-SNP
SWAP70	23075	hgsc.bcm.edu	hg19	11	9761767	9761767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SWAP70	NM_015055	exon9	c.T1228C	p.S410P	AAGTCCTCTGAAC	.	106.0	5.0	60.0	0.0	.	40	.	.	Atlas-SNP
KCNJ11	3767	hgsc.bcm.edu	hg19	11	17409184	17409184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCNJ11	NM_000525	exon1	c.A455G	p.Q152R	ATGTTCTGCACGA	.	84.0	4.0	63.0	0.0	.	39	.	.	Atlas-SNP
PRMT3	10196	hgsc.bcm.edu	hg19	11	20409581	20409581	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRMT3	NM_005788	exon2	c.G45T	p.V15V	CGCTGTGGAGAAT	.	212.0	76.0	185.0	0.0	.	50	.	.	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	hg19	11	22646565	22646565	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCF	NM_022725	exon1	c.T792C	p.T264T	GCGGCTAGTCACT	.	108.0	33.0	67.0	0.0	.	24	.	.	Atlas-SNP
BDNF	627	hgsc.bcm.edu	hg19	11	27695819	27695819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BDNF	NM_001143810	exon2	c.A13G	p.T5A	AACTGGTGGCTCC	.	94.0	4.0	91.0	0.0	.	63	.	.	Atlas-SNP
TTC17	55761	hgsc.bcm.edu	hg19	11	43411338	43411338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TTC17	NM_018259	exon3	c.G386C	p.G129A	ATGATGGCACATA	.	198.0	57.0	215.0	0.0	.	112	.	.	Atlas-SNP
ACCS	84680	hgsc.bcm.edu	hg19	11	44102738	44102738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ACCS	NM_032592	exon12	c.A979G	p.M327V	TTCGGGATGTCTG	.	140.0	6.0	101.0	0.0	.	64	.	.	Atlas-SNP
CKAP5	9793	hgsc.bcm.edu	hg19	11	46818446	46818446	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CKAP5	NM_001008938	exon12	c.A1383G	p.E461E	CAATGCTTCAAAT	.	145.0	6.0	142.0	0.0	.	134	.	.	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	hg19	11	47758184	47758184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FNBP4	NM_015308	exon9	c.A1565G	p.E522G	TGTTCTTCTTCTA	.	81.0	4.0	87.0	0.0	.	99	.	.	Atlas-SNP
OR4C15	81309	hgsc.bcm.edu	hg19	11	55322070	55322070	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR4C15	NM_001001920	exon1	c.A288G	p.L96L	CATGCTAATTGTA	.	77.0	4.0	59.0	0.0	.	145	.	.	Atlas-SNP
OR5F1	338674	hgsc.bcm.edu	hg19	11	55761365	55761365	+	Missense_Mutation	SNP	G	G	A	rs377087548	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5F1	NM_003697	exon1	c.C737T	p.T246I	ATGGCTGTCAGGT	.	84.0	34.0	92.0	0.0	.	116	.	.	Atlas-SNP
OR5T2	219464	hgsc.bcm.edu	hg19	11	56000212	56000212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR5T2	NM_001004746	exon1	c.A450T	p.E150D	AAAGCATTCTGTG	.	208.0	77.0	177.0	0.0	.	107	.	.	Atlas-SNP
FAM111B	374393	hgsc.bcm.edu	hg19	11	58892143	58892143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM111B	NM_198947	exon4	c.A573G	p.I191M	TGCTATAGGAAGG	.	125.0	5.0	119.0	0.0	.	84	.	.	Atlas-SNP
DAGLA	747	hgsc.bcm.edu	hg19	11	61502340	61502340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DAGLA	NM_006133	exon10	c.A994G	p.R332G	CCTGCGAGGCCGC	.	113.0	5.0	86.0	0.0	.	109	.	.	Atlas-SNP
SLC22A20	440044	hgsc.bcm.edu	hg19	11	64981537	64981537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC22A20	NM_001004326	exon1	c.C194T	p.S65L	ACGACTCGGGGGC	.	63.0	20.0	65.0	0.0	.	36	.	.	Atlas-SNP
LTBP3	4054	hgsc.bcm.edu	hg19	11	65306671	65306671	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LTBP3	NM_001130144	exon28	c.C3792A	p.R1264R	CAGCCCGCGCTGG	.	70.0	4.0	55.0	0.0	.	55	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65347712	65347712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EHBP1L1	NM_001099409	exon5	c.T473C	p.L158P	TGCTGCTGCGGGA	.	146.0	6.0	101.0	0.0	.	64	.	.	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	hg19	11	68835002	68835002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TPCN2	NM_139075	exon8	c.C758G	p.T253S	GGCTGACCTACTT	.	56.0	11.0	46.0	0.0	.	63	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78498080	78498080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ODZ4_ENST00000278550,NS,carcinoma,0,2	.	NM_001098816	exon16	c.C2228T	p.T743I	CGGCAGGTGCCCC	.	74.0	3.0	58.0	0.0	.	.	.	.	Atlas-SNP
SLC36A4	120103	hgsc.bcm.edu	hg19	11	92917643	92917643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC36A4	NM_152313	exon3	c.A223G	p.T75A	GGCCAGTTCCAAT	.	68.0	4.0	64.0	0.0	.	61	.	.	Atlas-SNP
KIAA1377	57562	hgsc.bcm.edu	hg19	11	101833708	101833708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA1377	NM_020802	exon6	c.T1942C	p.S648P	AGTCATTCACTGA	.	96.0	4.0	95.0	0.0	.	111	.	.	Atlas-SNP
IL18	3606	hgsc.bcm.edu	hg19	11	112020884	112020884	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IL18	NM_001562	exon4	c.C137G	p.S46X	ATGACTGATAATT	.	99.0	36.0	94.0	0.0	.	10	.	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	hg19	11	113105812	113105812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NCAM1	NM_001242607	exon16	c.T1829C	p.V610A	ACGCCGTAAGGCT	.	95.0	4.0	83.0	0.0	.	372	.	.	Atlas-SNP
USP28	57646	hgsc.bcm.edu	hg19	11	113683141	113683141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USP28	NM_020886	exon16	c.G1829A	p.R610Q	CTCTGTCGGGGTT	.	94.0	4.0	92.0	0.0	.	135	.	.	Atlas-SNP
SLC37A4	2542	hgsc.bcm.edu	hg19	11	118896697	118896697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC37A4	NM_001467	exon8	c.G964A	p.V322M	TGGTCACTGTTAC	.	139.0	6.0	121.0	0.0	.	19	.	.	Atlas-SNP
SRPR	6734	hgsc.bcm.edu	hg19	11	126135040	126135040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SRPR	NM_003139	exon11	c.T1339C	p.F447L	CACTGAAGCCATT	.	85.0	4.0	72.0	0.0	.	60	.	.	Atlas-SNP
ST3GAL4	6484	hgsc.bcm.edu	hg19	11	126279255	126279255	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ST3GAL4	NM_001254757	exon9	c.A720G	p.A240A	GATTGCAGCTGAC	.	119.0	7.0	114.0	0.0	.	25	.	.	Atlas-SNP
TP53AIP1	63970	hgsc.bcm.edu	hg19	11	128807456	128807456	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TP53AIP1	NM_001251964	exon2	c.A258G	p.T86T	AGATGCTGTCACT	.	108.0	5.0	51.0	0.0	.	12	.	.	Atlas-SNP
APLP2	334	hgsc.bcm.edu	hg19	11	130011950	130011950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	APLP2	NM_001642	exon17	c.T2171G	p.I724S	GCACCATCAGCCA	.	111.0	33.0	91.0	0.0	.	71	.	.	Atlas-SNP
NTM	50863	hgsc.bcm.edu	hg19	11	132184537	132184537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NTM	NM_001144059	exon6	c.A874G	p.N292D	TATGGGAACTACA	.	97.0	4.0	86.0	0.0	.	253	.	.	Atlas-SNP
FBXL14	144699	hgsc.bcm.edu	hg19	12	1702306	1702306	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FBXL14	NM_152441	exon1	c.T927C	p.S309S	GGAGAGAGACTTG	.	42.0	4.0	60.0	0.0	.	19	.	.	Atlas-SNP
CLEC9A	283420	hgsc.bcm.edu	hg19	12	10213810	10213810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CLEC9A	NM_207345	exon6	c.A257G	p.K86R	AATGGAAGAGAAG	.	82.0	4.0	101.0	0.0	.	41	.	.	Atlas-SNP
TMEM52B	120939	hgsc.bcm.edu	hg19	12	10342627	10342627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_153022	exon4	c.T380C	p.F127S	GTCGCTTCACAGT	.	99.0	4.0	110.0	0.0	.	.	.	.	Atlas-SNP
SLCO1B3	28234	hgsc.bcm.edu	hg19	12	21015742	21015742	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLCO1B3	NM_019844	exon8	c.A681G	p.G227G	ACTGGGATCTCTG	.	91.0	6.0	208.0	0.0	.	151	.	.	Atlas-SNP
BHLHE41	79365	hgsc.bcm.edu	hg19	12	26276611	26276611	+	Missense_Mutation	SNP	T	T	C	rs75677280	bycluster;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BHLHE41	NM_030762	exon4	c.A298G	p.T100A	AGGCGGTTAAAGC	.	81.0	4.0	102.0	0.0	.	20	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26811016	26811016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITPR2	NM_002223	exon17	c.T1934C	p.I645T	ACAGGGATAGCAG	.	73.0	4.0	110.0	0.0	.	270	.	.	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46320825	46320825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCAF11	NM_004719	exon11	c.A2659G	p.T887A	TAGAAGTTTCTCT	.	93.0	4.0	88.0	0.0	.	145	.	.	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46357973	46357973	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCAF11	.	.	.	.	GTTTCCTATAAGA	.	23.0	13.0	19.0	0.0	.	145	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50536965	50536965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_147190	exon3	c.A326G	p.E109G	AGGCCCTCCAGCC	.	130.0	6.0	94.0	0.0	.	.	.	.	Atlas-SNP
SLC4A8	9498	hgsc.bcm.edu	hg19	12	51856125	51856125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC4A8	NM_001039960	exon10	c.A1133G	p.E378G	CAAAAGAGCGAGA	.	102.0	5.0	92.0	0.0	.	292	.	.	Atlas-SNP
SP1	6667	hgsc.bcm.edu	hg19	12	53800445	53800445	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SP1	NM_138473	exon4	c.A1752G	p.E584E	AGAGGAAGGAGAA	.	86.0	4.0	75.0	0.0	.	57	.	.	Atlas-SNP
AMHR2	269	hgsc.bcm.edu	hg19	12	53823319	53823319	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AMHR2	NM_020547	exon8	c.A1050G	p.G350G	CATTGGAGACCTG	.	138.0	7.0	132.0	0.0	.	61	.	.	Atlas-SNP
OR6C1	390321	hgsc.bcm.edu	hg19	12	55714409	55714409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR6C1	NM_001005182	exon1	c.A26G	p.E9G	TAACAGAGTTTAT	.	74.0	4.0	86.0	0.0	.	58	.	.	Atlas-SNP
DNAJC14	85406	hgsc.bcm.edu	hg19	12	56222422	56222422	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJC14	NM_032364	exon2	c.A21G	p.G7G	TCTTTCTCCGGGG	.	91.0	4.0	104.0	0.0	.	52	.	.	Atlas-SNP
PRIM1	5557	hgsc.bcm.edu	hg19	12	57135246	57135246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRIM1	NM_000946	exon9	c.A955G	p.S319G	AAGGGCTCTTCAG	.	103.0	6.0	89.0	0.0	.	22	.	.	Atlas-SNP
MYO1A	4640	hgsc.bcm.edu	hg19	12	57437910	57437910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYO1A	NM_005379	exon9	c.T724C	p.S242P	AGCTGGAGGCGTC	.	202.0	9.0	157.0	0.0	.	122	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58123479	58123479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AGAP2	NM_001122772	exon13	c.A2500G	p.R834G	TCCTCCTCTGCTT	.	108.0	7.0	100.0	0.0	.	167	.	.	Atlas-SNP
C12orf56	115749	hgsc.bcm.edu	hg19	12	64664453	64664453	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C12orf56	NM_001170633	exon12	c.T1626C	p.G542G	TGAAAGACCCCTC	.	99.0	4.0	72.0	0.0	.	42	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	90015351	90015351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ATP2B1	NM_001001323	exon9	c.A1562G	p.N521S	GCACAATTCACAG	.	72.0	4.0	76.0	0.0	.	191	.	.	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	hg19	12	105424187	105424187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ALDH1L2,rectum,carcinoma,0,1	ALDH1L2	NM_001034173	exon21	c.G2431A	p.V811M	TGAACACGGTCGG	.	84.0	4.0	53.0	0.0	.	71	.	.	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109834370	109834370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYO1H	NM_001101421	exon3	c.T424C	p.S142P	CTGTTCTCCAACC	.	93.0	4.0	58.0	0.0	.	98	.	.	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	hg19	12	122826186	122826186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CLIP1	NM_001247997	exon11	c.G1565A	p.R522K	TGTACTCTCAATG	.	66.0	4.0	69.0	0.0	.	126	.	.	Atlas-SNP
ZCCHC8	55596	hgsc.bcm.edu	hg19	12	122958449	122958449	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZCCHC8	NM_017612	exon14	c.T1719C	p.S573S	CTTTTCAGATGTT	.	90.0	4.0	60.0	0.0	.	56	.	.	Atlas-SNP
RILPL1	353116	hgsc.bcm.edu	hg19	12	123983122	123983122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RILPL1	NM_178314	exon4	c.A770G	p.E257G	CTGTGCTCCCCCT	.	179.0	8.0	106.0	0.0	.	23	.	.	Atlas-SNP
POLE	5426	hgsc.bcm.edu	hg19	12	133219191	133219191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POLE	NM_006231	exon37	c.A4853G	p.N1618S	CCATAGTTGATCT	.	140.0	40.0	77.0	0.0	.	416	.	.	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25017789	25017789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PARP4	NM_006437	exon28	c.A3446G	p.E1149G	CAAACCTCATGAC	.	86.0	5.0	64.0	0.0	.	142	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25274939	25274939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ATP12A,colon,carcinoma,0,3	ATP12A	NM_001185085	exon13	c.A1778G	p.D593G	CATTTGACATAGA	.	140.0	60.0	134.0	0.0	.	172	.	.	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	hg19	13	25478135	25478135	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CENPJ	NM_018451	exon8	c.A2754G	p.E918E	AAACTTTTCTATT	.	110.0	5.0	110.0	0.0	.	116	.	.	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25745556	25745556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_152704	exon1	c.T202C	p.F68L	ATTTGAAGGCAGC	.	93.0	4.0	77.0	0.0	.	.	.	.	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	hg19	13	28588598	28588598	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FLT3	NM_004119	exon23	c.A2850G	p.A950A	TTCTTCTGCATCT	.	95.0	4.0	102.0	0.0	.	15525	.	.	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	hg19	13	38153044	38153044	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POSTN	NM_006475	exon15	c.A1899G	p.T633T	AACAGGTGTGTCT	.	77.0	4.0	97.0	0.0	.	161	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39343836	39343836	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FREM2	NM_207361	exon4	c.T5532C	p.D1844D	GAGTGATGGGGAG	.	302.0	115.0	257.0	0.0	.	385	.	.	Atlas-SNP
LACC1	144811	hgsc.bcm.edu	hg19	13	44455553	44455553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001128303	exon2	c.A432C	p.K144N	TTTTAAACAGTCC	.	84.0	4.0	79.0	0.0	.	.	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77740659	77740659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYCBP2	NM_015057	exon41	c.A6145G	p.T2049A	CGATTGTCATCCA	.	150.0	6.0	119.0	0.0	.	1029	.	.	Atlas-SNP
RNF219	79596	hgsc.bcm.edu	hg19	13	79213208	79213208	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RNF219	NM_024546	exon5	c.301-2A>G	.	TCGTCCTGAAAAA	.	89.0	4.0	111.0	0.0	.	94	.	.	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	hg19	13	99043122	99043122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FARP1	NM_005766	exon11	c.T1076C	p.V359A	AGAAGGTGCAGTT	.	91.0	4.0	99.0	0.0	.	207	.	.	Atlas-SNP
DOCK9	23348	hgsc.bcm.edu	hg19	13	99515318	99515318	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon32	c.G3537A	p.R1179R	ATTGATCCGCTGG	.	117.0	45.0	132.0	0.0	.	311	.	.	Atlas-SNP
PCID2	55795	hgsc.bcm.edu	hg19	13	113834473	113834473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PCID2	NM_001258212	exon11	c.A1021G	p.S341G	TCTACCTCACAGC	.	103.0	6.0	121.0	0.0	.	30	.	.	Atlas-SNP
OR4K2	390431	hgsc.bcm.edu	hg19	14	20345276	20345276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	OR4K2	NM_001005501	exon1	c.C850G	p.P284A	CTGAACCCAATAA	.	27.0	5.0	50.0	0.0	.	97	.	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24530141	24530141	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	LRRC16B,colon,carcinoma,0,1	LRRC16B	NM_138360	exon26	c.T2196C	p.F732F	GCTGTTTCCCAGC	.	112.0	5.0	124.0	1.0	.	120	.	.	Atlas-SNP
SCFD1	23256	hgsc.bcm.edu	hg19	14	31139491	31139491	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCFD1	NM_016106	exon11	c.A885G	p.E295E	TTTGGAAGAATCT	.	93.0	4.0	174.0	0.0	.	43	.	.	Atlas-SNP
FKBP3	2287	hgsc.bcm.edu	hg19	14	45590787	45590787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	FKBP3,colon,carcinoma,0,1	FKBP3	NM_002013	exon4	c.G355A	p.G119R	TATCTCCCTTTTT	.	48.0	2.0	95.0	0.0	.	21	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45653040	45653040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCM	NM_020937	exon17	c.T4450C	p.F1484L	GAAGACTTCAAGG	.	78.0	4.0	149.0	0.0	.	225	.	.	Atlas-SNP
POLE2	5427	hgsc.bcm.edu	hg19	14	50120709	50120709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POLE2	NM_001197331	exon15	c.A1210G	p.R404G	CTTACCTGCAAGG	.	88.0	4.0	119.0	0.0	.	36	.	.	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	hg19	14	58831470	58831470	+	Missense_Mutation	SNP	A	A	G	rs78751371	bycluster;by1000genomes;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ARID4A	NM_002892	exon20	c.A2663G	p.D888G	CCAGTGATTGTAT	.	53.0	4.0	84.0	0.0	.	222	.	A|0.999;T|0.001	Atlas-SNP
ATP6V1D	51382	hgsc.bcm.edu	hg19	14	67807190	67807190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ATP6V1D	NM_015994	exon8	c.A569G	p.E190G	TCCAGCTCTGTGA	.	58.0	4.0	78.0	0.0	.	21	.	.	Atlas-SNP
TMEM229B	161145	hgsc.bcm.edu	hg19	14	67940454	67940454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMEM229B	NM_182526	exon3	c.A187G	p.M63V	GGTACATGCGCTC	.	78.0	4.0	123.0	0.0	.	20	.	.	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70512763	70512763	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC8A3	NM_183002	exon8	c.T2685C	p.R895R	GCAGCCACGGGGG	.	85.0	4.0	124.0	0.0	.	234	.	.	Atlas-SNP
MAP3K9	4293	hgsc.bcm.edu	hg19	14	71201208	71201208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MAP3K9	NM_033141	exon10	c.T1921C	p.S641P	CCAGGGACTTGAG	.	78.0	4.0	84.0	0.0	.	109	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72176082	72176082	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SIPA1L1	NM_015556	exon15	c.T3972C	p.A1324A	CTCTGCTGACAGT	.	98.0	4.0	135.0	0.0	.	219	.	.	Atlas-SNP
RBM25	58517	hgsc.bcm.edu	hg19	14	73566448	73566448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBM25	NM_021239	exon9	c.A857G	p.D286G	TCAGAGACACACA	.	76.0	4.0	103.0	0.0	.	81	.	.	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	hg19	14	73743385	73743385	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NUMB	NM_001005743	exon13	c.G1857A	p.Q619Q	AGCCCACTGGGCT	.	90.0	4.0	143.0	0.0	.	56	.	.	Atlas-SNP
GTF2A1	2957	hgsc.bcm.edu	hg19	14	81662585	81662585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GTF2A1	NM_015859	exon6	c.G479A	p.G160D	AGCTGGCCTAAAG	.	68.0	4.0	94.0	0.0	.	34	.	.	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91386646	91386646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RPS6KA5	NM_182398	exon7	c.A710G	p.D237G	CACCAGTCAACTG	.	103.0	5.0	189.0	0.0	.	135	.	.	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	hg19	14	91792363	91792363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC88C	NM_001080414	exon11	c.A1088G	p.K363R	ATGGCCTTGGTTT	.	75.0	4.0	81.0	0.0	.	192	.	.	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	hg19	14	92466343	92466343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIP11	NM_004239	exon12	c.A4667G	p.K1556R	ATTTGTTTTTGTT	.	92.0	4.0	172.0	0.0	.	184	.	.	Atlas-SNP
CPSF2	53981	hgsc.bcm.edu	hg19	14	92609578	92609578	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CPSF2	NM_017437	exon9	c.T1080C	p.T360T	AACTACTCCTGGG	.	62.0	4.0	131.0	0.0	.	63	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94120353	94120353	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UNC79	NM_020818	exon38	c.T5850C	p.A1950A	CGCAGCTCTCAGT	.	81.0	6.0	127.0	0.0	.	366	.	.	Atlas-SNP
ASB2	51676	hgsc.bcm.edu	hg19	14	94404109	94404109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ASB2	NM_001202429	exon9	c.T1706C	p.L569P	GAGCAGAGCTGCA	.	93.0	4.0	125.0	0.0	.	71	.	.	Atlas-SNP
EML1	2009	hgsc.bcm.edu	hg19	14	100380523	100380523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EML1	NM_001008707	exon15	c.A1559G	p.E520G	TTCCAGAACAGTT	.	83.0	4.0	144.0	0.0	.	97	.	.	Atlas-SNP
MTA1	9112	hgsc.bcm.edu	hg19	14	105916421	105916421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	MTA1,NS,carcinoma,0,1	MTA1	NM_004689	exon5	c.C268T	p.P90S	GAGAACCCGGAAA	.	100.0	0.0	147.0	0.0	.	61	.	.	Atlas-SNP
CHRM5	1133	hgsc.bcm.edu	hg19	15	34355738	34355738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHRM5	NM_012125	exon3	c.T820C	p.S274P	TCATCCTCCCGCA	.	54.0	24.0	33.0	0.0	.	59	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	hg19	15	40897317	40897317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	CASC5_ENST00000346991,NS,carcinoma,0,2	CASC5	NM_144508	exon3	c.A45G	p.I15M	CAATATAGAGAGA	.	56.0	3.0	144.0	1.0	.	269	.	.	Atlas-SNP
UBR1	197131	hgsc.bcm.edu	hg19	15	43360145	43360145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UBR1	NM_174916	exon6	c.A749G	p.D250G	TCACAGTCAAGAG	.	78.0	4.0	102.0	0.0	.	124	.	.	Atlas-SNP
ZSCAN29	146050	hgsc.bcm.edu	hg19	15	43661910	43661910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZSCAN29	NM_152455	exon1	c.A202G	p.T68A	AGACGGTCAGGAA	.	93.0	4.0	113.0	0.0	.	57	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48738934	48738934	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FBN1	NM_000138	exon47	c.T5757C	p.G1919G	GATGAAACCATGA	.	61.0	4.0	64.0	0.0	.	310	.	.	Atlas-SNP
USP50	373509	hgsc.bcm.edu	hg19	15	50833322	50833322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USP50	NM_203494	exon4	c.A584G	p.E195G	CATTTCTCACACT	.	85.0	4.0	94.0	0.0	.	24	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50881855	50881855	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRPM7	NM_017672	exon28	c.4325-2A>G	.	GTGTCCTTTAATA	.	56.0	4.0	81.0	0.0	.	145	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	hg19	15	52697484	52697484	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYO5A	NM_000259	exon9	c.T1053C	p.P351P	ACTTACAGGTATT	.	88.0	5.0	67.0	0.0	.	145	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54590036	54590036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UNC13C	NM_001080534	exon10	c.C4016A	p.S1339Y	CTGTATCTGGGGC	.	304.0	104.0	340.0	0.0	.	674	.	.	Atlas-SNP
AQP9	366	hgsc.bcm.edu	hg19	15	58467128	58467128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	AQP9,NS,carcinoma,0,1	AQP9	NM_020980	exon4	c.T388C	p.S130P	CTTATGTCCTTTG	.	144.0	6.0	108.0	1.0	.	39	.	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	hg19	15	60768331	60768331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NARG2	NM_024611	exon3	c.T77C	p.F26S	CGAGAGAAAAATG	.	85.0	4.0	123.0	0.0	.	82	.	.	Atlas-SNP
PIF1	80119	hgsc.bcm.edu	hg19	15	65108548	65108548	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PIF1	NM_025049	exon13	c.A1875G	p.P625P	ATCATCTGGGGAC	.	96.0	4.0	90.0	0.0	.	43	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	65956954	65956954	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DENND4A	NM_001144823	exon31	c.A5463G	p.G1821G	CATTGGTCCATAG	.	149.0	7.0	169.0	0.0	.	217	.	.	Atlas-SNP
CELF6	60677	hgsc.bcm.edu	hg19	15	72581260	72581260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CELF6	NM_001172684	exon9	c.G1042T	p.G348C	CCACGCCGGGGCT	.	204.0	93.0	189.0	0.0	.	30	.	.	Atlas-SNP
HEXA	3073	hgsc.bcm.edu	hg19	15	72638893	72638893	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	HEXA,rectum,carcinoma,0,2	HEXA	NM_000520	exon11	c.C1305G	p.Y435X	CACTATGTAGAAA	.	133.0	0.0	92.0	0.0	.	48	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75969161	75969161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CSPG4	NM_001897	exon10	c.A5699G	p.D1900G	CCTGAATCCACAT	.	85.0	4.0	70.0	0.0	.	175	.	.	Atlas-SNP
TSPAN3	10099	hgsc.bcm.edu	hg19	15	77348564	77348564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TSPAN3	NM_198902	exon2	c.T97C	p.Y33H	AGACATAGGCTCC	.	97.0	4.0	94.0	0.0	.	21	.	.	Atlas-SNP
AGPHD1	123688	hgsc.bcm.edu	hg19	15	78825563	78825563	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	AGPHD1,brain,glioma,0,2	AGPHD1	NM_001013619	exon5	c.G673T	p.G225X	AATCACGGAGATC	.	139.0	0.0	125.0	0.0	.	22	.	.	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	hg19	15	90281279	90281279	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	WDR93	NM_020212	exon16	c.T1773C	p.Y591Y	AGACTATTCACAT	.	93.0	4.0	79.0	0.0	.	63	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99467825	99467825	+	Silent	SNP	G	G	A	rs146023463		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	IGF1R	NM_000875	exon13	c.G2694A	p.P898P	AAACCCGGGGAAC	.	195.0	72.0	198.0	0.0	.	147	.	G|1.000;A|0.000	Atlas-SNP
RHBDF1	64285	hgsc.bcm.edu	hg19	16	113173	113173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RHBDF1	NM_022450	exon5	c.A470G	p.D157G	AGGGGGTCTATGA	.	83.0	4.0	50.0	0.0	.	54	.	.	Atlas-SNP
SOLH	6650	hgsc.bcm.edu	hg19	16	599102	599102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SOLH	NM_005632	exon5	c.A1559G	p.E520G	CCCAGGAGATCAA	.	109.0	5.0	86.0	0.0	.	47	.	.	Atlas-SNP
TPSAB1	7177	hgsc.bcm.edu	hg19	16	1291189	1291189	+	Missense_Mutation	SNP	G	G	T	rs143010092	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	TPSAB1,NS,carcinoma,0,1	TPSAB1	NM_003294	exon3	c.G97T	p.G33W	ATCGTCGGGGGTC	.	231.0	0.0	153.0	0.0	.	24	.	G|1.000;A|0.000	Atlas-SNP
TSC2	7249	hgsc.bcm.edu	hg19	16	2103446	2103446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TSC2	NM_001114382	exon4	c.A329G	p.Q110R	TCGTGCAGGGGCA	.	93.0	4.0	63.0	0.0	.	364	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2813553	2813553	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SRRM2	NM_016333	exon11	c.T3024C	p.S1008S	GCCAAGTCTTTCT	.	98.0	4.0	107.0	0.0	.	263	.	.	Atlas-SNP
ZG16B	124220	hgsc.bcm.edu	hg19	16	2881993	2881993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZG16B	NM_145252	exon4	c.T460C	p.S154P	ATCTCCTCTGCCT	.	120.0	5.0	83.0	0.0	.	16	.	.	Atlas-SNP
TIGD7	91151	hgsc.bcm.edu	hg19	16	3349414	3349414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TIGD7	NM_033208	exon2	c.A1201G	p.N401D	GAAGATTTTCCCA	.	215.0	81.0	240.0	0.0	.	41	.	.	Atlas-SNP
SCNN1G	6340	hgsc.bcm.edu	hg19	16	23208690	23208690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCNN1G	NM_001039	exon6	c.T1019C	p.V340A	CCTTCGTCGAAGA	.	120.0	5.0	88.0	0.0	.	82	.	.	Atlas-SNP
CD2BP2	10421	hgsc.bcm.edu	hg19	16	30365247	30365247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CD2BP2	NM_006110	exon4	c.A350G	p.D117G	CAGCTGTCTCGGA	.	119.0	6.0	86.0	0.0	.	30	.	.	Atlas-SNP
ITGAL	3683	hgsc.bcm.edu	hg19	16	30490673	30490673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ITGAL	NM_002209	exon6	c.A467G	p.D156G	ACGTAGACCTGGT	.	73.0	4.0	62.0	0.0	.	149	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31927599	31927599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF267	NM_003414	exon4	c.A2029G	p.T677A	CTCACTACACATC	.	52.0	4.0	56.0	0.0	.	94	.	.	Atlas-SNP
SNX20	124460	hgsc.bcm.edu	hg19	16	50707345	50707345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SNX20	NM_182854	exon4	c.A923G	p.E308G	GTGAGCTCCTTCA	.	184.0	8.0	148.0	0.0	.	50	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51175352	51175352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SALL1	NM_002968	exon2	c.A781G	p.N261D	CTGCATTCTGAGA	.	98.0	4.0	109.0	0.0	.	301	.	.	Atlas-SNP
BBS2	583	hgsc.bcm.edu	hg19	16	56533696	56533696	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BBS2	NM_031885	exon12	c.A1521G	p.A507A	CCTCTGTGCCCGT	.	100.0	4.0	101.0	0.0	.	67	.	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	hg19	16	57060298	57060298	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	NLRC5	NM_032206	exon5	c.T1443C	p.A481A	TATTGCTCCACCC	.	146.0	6.0	124.0	0.0	.	186	.	.	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	hg19	16	58633211	58633211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNOT1	NM_206999	exon2	c.T31C	p.S11P	TTTGAGACAAGGC	.	100.0	4.0	115.0	0.0	.	359	.	.	Atlas-SNP
DYNC1LI2	1783	hgsc.bcm.edu	hg19	16	66783141	66783141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DYNC1LI2	NM_006141	exon3	c.T257C	p.L86P	TATTCTAGGCCTC	.	150.0	6.0	153.0	0.0	.	37	.	.	Atlas-SNP
CCDC79	283847	hgsc.bcm.edu	hg19	16	66820006	66820006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCDC79	NM_001136505	exon8	c.A488G	p.D163G	GACAAATCCAACT	.	96.0	4.0	87.0	0.0	.	32	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	hg19	16	67683061	67683061	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RLTPR	NM_001013838	exon18	c.C1674T	p.F558F	GAACTTCAACGTC	.	143.0	50.0	132.0	0.0	.	124	.	.	Atlas-SNP
SLC7A6OS	84138	hgsc.bcm.edu	hg19	16	68344764	68344764	+	Silent	SNP	A	A	G	rs147089863		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC7A6OS	NM_032178	exon1	c.T66C	p.A22A	CACAAGAGCCTCC	.	112.0	5.0	123.0	0.0	.	22	.	A|1.000;G|0.000	Atlas-SNP
CFDP1	10428	hgsc.bcm.edu	hg19	16	75338933	75338933	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CFDP1	NM_006324	exon6	c.A798G	p.R266R	TTTCCCTCGATTA	.	79.0	4.0	77.0	0.0	.	17	.	.	Atlas-SNP
SYCE1L	100130958	hgsc.bcm.edu	hg19	16	77245136	77245136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SYCE1L	NM_001129979	exon7	c.A386G	p.D129G	TGGAGGATCTGAT	.	211.0	84.0	189.0	0.0	.	10	.	.	Atlas-SNP
CENPN	55839	hgsc.bcm.edu	hg19	16	81066277	81066277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CENPN	NM_001100625	exon11	c.T1040C	p.V347A	TGTTTGTCCCATT	.	100.0	6.0	89.0	0.0	.	84	.	.	Atlas-SNP
CMIP	80790	hgsc.bcm.edu	hg19	16	81703808	81703808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CMIP	NM_198390	exon8	c.A887G	p.E296G	TGAACGAGCTCAA	.	106.0	5.0	91.0	0.0	.	37	.	.	Atlas-SNP
OSGIN1	29948	hgsc.bcm.edu	hg19	16	83994667	83994667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	OSGIN1,NS,carcinoma,0,1	OSGIN1	NM_182981	exon5	c.A478G	p.K160E	ATGCAGAAGAAGC	.	60.0	3.0	56.0	0.0	.	33	.	.	Atlas-SNP
KLHDC4	54758	hgsc.bcm.edu	hg19	16	87742992	87742992	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KLHDC4	NM_017566	exon10	c.G1326A	p.G442G	GAGCACCCCATGC	.	104.0	5.0	78.0	0.0	.	45	.	.	Atlas-SNP
CA5A	763	hgsc.bcm.edu	hg19	16	87960395	87960395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CA5A	NM_001739	exon2	c.A299G	p.Y100C	AAGAGGTAGCCAG	.	86.0	4.0	68.0	0.0	.	32	.	.	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	hg19	16	89849430	89849430	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FANCA	NM_000135	exon16	c.G1551A	p.R517R	GGCCAGCCGTGTC	.	393.0	157.0	326.0	0.0	.	99	.	.	Atlas-SNP
GAS8	2622	hgsc.bcm.edu	hg19	16	90106894	90106894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GAS8	NM_001481	exon9	c.A1198G	p.T400A	GCCCTGACGCTGG	.	64.0	4.0	42.0	0.0	.	29	.	.	Atlas-SNP
TUSC5	286753	hgsc.bcm.edu	hg19	17	1198888	1198888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TUSC5	NM_172367	exon2	c.T491C	p.I164T	TCATTATCATGGT	.	116.0	5.0	69.0	0.0	.	25	.	.	Atlas-SNP
ACADVL	37	hgsc.bcm.edu	hg19	17	7123814	7123814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ACADVL	NM_001270447	exon4	c.C239A	p.S80Y	ACCCCTCTGACGC	.	101.0	36.0	79.0	0.0	.	43	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7699846	7699846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH2	NM_020877	exon49	c.A7739G	p.E2580G	AGGAAGAGGTGAA	.	96.0	4.0	67.0	0.0	.	498	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7803881	7803881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHD3	NM_001005271	exon18	c.T2987C	p.L996S	GCAACTTGGAGGG	.	81.0	4.0	74.0	0.0	.	169	.	.	Atlas-SNP
CNTROB	116840	hgsc.bcm.edu	hg19	17	7851016	7851016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CNTROB	NM_001037144	exon14	c.G2121C	p.E707D	GCTGGAGGGCCTC	.	121.0	71.0	105.0	0.0	.	61	.	.	Atlas-SNP
PER1	5187	hgsc.bcm.edu	hg19	17	8051338	8051338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PER1	NM_002616	exon10	c.T1211C	p.L404P	AGCATGAGGGGTC	.	80.0	4.0	101.0	0.0	.	104	.	.	Atlas-SNP
VAMP2	6844	hgsc.bcm.edu	hg19	17	8064968	8064968	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	VAMP2,colon,carcinoma,0,1	VAMP2	NM_014232	exon3	c.C240T	p.S80S	GGCTGCGCTTGTT	.	130.0	13.0	138.0	0.0	.	5	.	.	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8393813	8393813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYH10	NM_001256012	exon35	c.A4729G	p.T1577A	GCTGGGTCCTCAT	.	182.0	8.0	179.0	0.0	.	148	.	.	Atlas-SNP
NT5M	56953	hgsc.bcm.edu	hg19	17	17250185	17250185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	NT5M,NS,carcinoma,0,1	NT5M	NM_020201	exon5	c.T611C	p.L204P	TGCAGCTGCAGCC	.	107.0	5.0	90.0	0.0	.	17	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26961916	26961916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0100	NM_014680	exon16	c.A2689G	p.M897V	CCTTCATCAGCTC	.	80.0	36.0	116.0	0.0	.	175	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26961957	26961957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0100	NM_014680	exon16	c.A2648G	p.D883G	ACATCATCCAAGA	.	69.0	5.0	87.0	0.0	.	175	.	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	hg19	17	39140493	39140493	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KRT40	NM_182497	exon3	c.T33C	p.S11S	CTCAGGAGAGCAG	.	102.0	5.0	60.0	0.0	.	27	.	.	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42964105	42964105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFTUD2	NM_004247	exon3	c.A119G	p.D40G	TCGTCGTCATCAT	.	121.0	6.0	105.0	0.0	.	85	.	.	Atlas-SNP
HEXIM1	10614	hgsc.bcm.edu	hg19	17	43227633	43227633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HEXIM1	NM_006460	exon1	c.A1076G	p.D359G	TTGGAGACTAGAC	.	85.0	4.0	70.0	0.0	.	25	.	.	Atlas-SNP
PHOSPHO1	162466	hgsc.bcm.edu	hg19	17	47304050	47304050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PHOSPHO1	NM_178500	exon2	c.A4G	p.S2G	AGCCACTCATTGT	.	115.0	5.0	54.0	0.0	.	7	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	hg19	17	56692692	56692692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TEX14	NM_001201457	exon8	c.G800A	p.G267E	CTGCTCCCATTCC	.	120.0	5.0	92.0	0.0	.	343	.	.	Atlas-SNP
CACNG4	27092	hgsc.bcm.edu	hg19	17	65026831	65026831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CACNG4	NM_014405	exon4	c.G695A	p.R232K	ATGCCAGGATGCC	.	173.0	68.0	149.0	0.0	.	44	.	.	Atlas-SNP
AMZ2	51321	hgsc.bcm.edu	hg19	17	66246396	66246396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	AMZ2	NM_001033574	exon2	c.T68C	p.V23A	TGCTTGTATCACA	.	90.0	4.0	80.0	0.0	.	15	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76472713	76472713	+	Nonsense_Mutation	SNP	C	C	A	rs116230343	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAH17	NM_173628	exon52	c.G8095T	p.E2699X	CTTTTTCGTCAAC	.	513.0	297.0	279.0	0.0	.	347	.	C|0.986;T|0.014	Atlas-SNP
CARD14	79092	hgsc.bcm.edu	hg19	17	78180851	78180851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CARD14	NM_024110	exon20	c.T2774C	p.V925A	TCCACGTCTCTGT	.	136.0	8.0	78.0	0.0	.	98	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2728514	2728514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SMCHD1	NM_015295	exon23	c.A2833G	p.T945A	AATGGAACAGCTT	.	65.0	4.0	74.0	0.0	.	88	.	.	Atlas-SNP
RBBP8	5932	hgsc.bcm.edu	hg19	18	20573440	20573440	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBBP8	NM_203292	exon11	c.A1650G	p.P550P	TTCCCCAGGGGAG	.	91.0	4.0	90.0	0.0	.	138	.	.	Atlas-SNP
GAREM	64762	hgsc.bcm.edu	hg19	18	29867200	29867200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_022751	exon4	c.G1360A	p.E454K	GCTCTTCGTAGGG	.	103.0	12.0	86.0	0.0	.	.	.	.	Atlas-SNP
DTNA	1837	hgsc.bcm.edu	hg19	18	32428290	32428290	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DTNA	NM_001390	exon13	c.A1296G	p.E432E	TGATGAAGAACAC	.	105.0	5.0	96.0	0.0	.	321	.	.	Atlas-SNP
ZNF24	7572	hgsc.bcm.edu	hg19	18	32920511	32920511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.A104G	p.E35G	CCCTCTTCGCCAT	.	60.0	22.0	45.0	0.0	.	40	.	.	Atlas-SNP
ZNF24	7572	hgsc.bcm.edu	hg19	18	32920512	32920512	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF24	NM_006965	exon2	c.G103T	p.E35X	CCTCTTCGCCATC	.	59.0	21.0	45.0	0.0	.	40	.	.	Atlas-SNP
FHOD3	80206	hgsc.bcm.edu	hg19	18	34182680	34182680	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FHOD3	NM_025135	exon8	c.A762G	p.K254K	GGAAAAAGATGGA	.	244.0	22.0	236.0	0.0	.	210	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43481064	43481064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EPG5	NM_020964	exon26	c.A4543G	p.T1515A	GCTTCGTCGGGTG	.	69.0	4.0	54.0	0.0	.	199	.	.	Atlas-SNP
C18orf25	147339	hgsc.bcm.edu	hg19	18	43820148	43820148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C18orf25	NM_145055	exon3	c.A893G	p.E298G	ATGCAGAGGCAGG	.	100.0	5.0	72.0	0.0	.	27	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44190737	44190737	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	LOXHD1	NM_144612	exon7	c.759+2T>C	.	GAACTCACCTGGG	.	73.0	4.0	69.0	0.0	.	367	.	.	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46798653	46798653	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DYM	NM_017653	exon11	c.T1146C	p.I382I	ATACAGAATCTCA	.	99.0	4.0	128.0	0.0	.	52	.	.	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	hg19	18	63525083	63525083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CDH7	NM_004361	exon8	c.A1267G	p.R423G	TTGGAGAGATACT	.	93.0	4.0	78.0	0.0	.	362	.	.	Atlas-SNP
APC2	10297	hgsc.bcm.edu	hg19	19	1469059	1469059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	APC2	NM_005883	exon15	c.A5759G	p.Q1920R	CGAAGCAGCACAA	.	52.0	4.0	25.0	0.0	.	50	.	.	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1791983	1791983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ATP8B3	NM_001178002	exon19	c.A2066G	p.E689G	TCCTGCTCCATCT	.	102.0	5.0	108.0	0.0	.	108	.	.	Atlas-SNP
ZFR2	23217	hgsc.bcm.edu	hg19	19	3821457	3821457	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFR2	NM_015174	exon10	c.T1512C	p.L504L	AATGGGAAGGTCC	.	95.0	4.0	74.0	0.0	.	63	.	.	Atlas-SNP
HOOK2	29911	hgsc.bcm.edu	hg19	19	12883615	12883615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HOOK2	NM_001100176	exon5	c.A367G	p.I123V	AACTGATGGCACA	.	66.0	4.0	58.0	0.0	.	73	.	.	Atlas-SNP
STX10	8677	hgsc.bcm.edu	hg19	19	13255480	13255480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STX10	NM_003765	exon7	c.T584C	p.L195P	GCATCCAGCATGC	.	98.0	4.0	74.0	0.0	.	12	.	.	Atlas-SNP
USHBP1	83878	hgsc.bcm.edu	hg19	19	17370230	17370230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USHBP1	NM_031941	exon7	c.A914G	p.E305G	AGCTTCTCAATGC	.	119.0	5.0	100.0	0.0	.	85	.	.	Atlas-SNP
FCHO1	23149	hgsc.bcm.edu	hg19	19	17881358	17881358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FCHO1	NM_001161358	exon7	c.A461G	p.E154G	GGAGGGAGAGTAC	.	68.0	6.0	55.0	0.0	.	69	.	.	Atlas-SNP
COMP	1311	hgsc.bcm.edu	hg19	19	18899995	18899995	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	COMP	NM_000095	exon5	c.C502T	p.L168L	AAGCCAGCCCCAC	.	81.0	31.0	86.0	0.0	.	62	.	.	Atlas-SNP
ATP13A1	57130	hgsc.bcm.edu	hg19	19	19764869	19764869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ATP13A1	NM_020410	exon14	c.T1898C	p.M633T	ACGGACATTCGCT	.	96.0	4.0	81.0	0.0	.	82	.	.	Atlas-SNP
ZNF682	91120	hgsc.bcm.edu	hg19	19	20116962	20116962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF682	NM_033196	exon4	c.T1349C	p.V450A	CGTTTGACGGCAG	.	63.0	5.0	53.0	0.0	.	51	.	.	Atlas-SNP
DPY19L3	147991	hgsc.bcm.edu	hg19	19	32944160	32944160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DPY19L3	NM_001172774	exon9	c.T965C	p.V322A	TTTCAGTATTCAT	.	83.0	4.0	157.0	0.0	.	70	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36352785	36352785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIRREL2	NM_199180	exon11	c.A1369G	p.S457G	CCAGAGAGCCGCG	.	132.0	6.0	112.0	0.0	.	170	.	.	Atlas-SNP
ZNF829	374899	hgsc.bcm.edu	hg19	19	37383232	37383232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF829	NM_001171979	exon6	c.A704G	p.K235R	CATGGTTTCTCTT	.	60.0	4.0	83.0	0.0	.	70	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38378513	38378513	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	WDR87	NM_031951	exon6	c.A5681C	p.K1894T	GTCAGCTTCTCCT	.	208.0	84.0	206.0	0.0	.	191	.	.	Atlas-SNP
CATSPERG	57828	hgsc.bcm.edu	hg19	19	38834967	38834967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CATSPERG	NM_021185	exon6	c.A628G	p.R210G	CTGAAGAGAGACC	.	149.0	6.0	108.0	0.0	.	121	.	.	Atlas-SNP
ZNF780B	163131	hgsc.bcm.edu	hg19	19	40541735	40541735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF780B	NM_001005851	exon5	c.T1031C	p.L344P	GTCAGAAGAGTAA	.	86.0	4.0	92.0	0.0	.	143	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41060447	41060447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SPTBN4	NM_020971	exon24	c.T4979C	p.L1660P	AGCTGCTCAAGAA	.	168.0	7.0	117.0	0.0	.	213	.	.	Atlas-SNP
ZNF226	7769	hgsc.bcm.edu	hg19	19	44680289	44680289	+	Missense_Mutation	SNP	A	A	G	rs200035894	alternate_allele	TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001032372	exon6	c.A874G	p.S292G	TGTTACAGCCCAG	.	148.0	6.0	140.0	0.0	.	.	.	A|0.999;T|0.001	Atlas-SNP
ZFP112	7771	hgsc.bcm.edu	hg19	19	44832241	44832241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP112	NM_001083335	exon5	c.A2087G	p.D696G	CACTCATCACATT	.	88.0	4.0	75.0	0.0	.	219	.	.	Atlas-SNP
ZNF180	7733	hgsc.bcm.edu	hg19	19	44988603	44988603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF180	NM_013256	exon3	c.A176G	p.E59G	GTGTCTTCTCCCT	.	80.0	4.0	72.0	0.0	.	103	.	.	Atlas-SNP
CBLC	23624	hgsc.bcm.edu	hg19	19	45285709	45285709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CBLC	NM_001130852	exon4	c.T740C	p.V247A	ATGAGGTCCAAGA	.	207.0	9.0	118.0	0.0	.	41	.	.	Atlas-SNP
RSPH6A	81492	hgsc.bcm.edu	hg19	19	46305378	46305378	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RSPH6A	NM_030785	exon4	c.G1798T	p.E600X	CCTTACCTGCATC	.	126.0	45.0	107.0	0.0	.	70	.	.	Atlas-SNP
MYPOP	339344	hgsc.bcm.edu	hg19	19	46393962	46393962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYPOP	NM_001012643	exon3	c.C1119T	p.L373L	CGGAGGGAGCGGG	.	75.0	25.0	64.0	0.0	.	23	.	.	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	hg19	19	47876048	47876048	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DHX34	NM_014681	exon8	c.C1830A	p.A610A	CGCAGCCGCACTT	.	156.0	105.0	185.0	0.0	.	98	.	.	Atlas-SNP
SLC17A7	57030	hgsc.bcm.edu	hg19	19	49937914	49937914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLC17A7	NM_020309	exon5	c.G582A	p.W194X	TTTGCTCCAGATC	.	85.0	4.0	102.0	0.0	.	57	.	.	Atlas-SNP
MED25	81857	hgsc.bcm.edu	hg19	19	50338357	50338357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED25	NM_030973	exon14	c.T1597C	p.F533L	AGCGGCTTCGTCA	.	122.0	5.0	150.0	0.0	.	98	.	.	Atlas-SNP
PPP2R1A	5518	hgsc.bcm.edu	hg19	19	52709237	52709237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	PPP2R1A,colon,carcinoma,0,3	PPP2R1A	NM_014225	exon3	c.A191G	p.E64G	AAGATGAGGTCCT	.	90.0	4.0	114.0	2.0	.	187	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53057563	53057563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF808	NM_001039886	exon5	c.C1394T	p.T465M	CTTTCACGTGTAA	.	52.0	4.0	102.0	0.0	.	81	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53058144	53058144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF808	NM_001039886	exon5	c.A1975G	p.T659A	GGGAAGACCTTCA	.	35.0	4.0	73.0	0.0	.	81	.	.	Atlas-SNP
ZNF765	91661	hgsc.bcm.edu	hg19	19	53911420	53911420	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF765	NM_001040185	exon4	c.A612G	p.Q204Q	CACACAAAAACAG	.	80.0	4.0	155.0	0.0	.	61	.	.	Atlas-SNP
ZNF331	55422	hgsc.bcm.edu	hg19	19	54081146	54081146	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	ZNF331_ENST00000253144,NS,carcinoma,0,1	ZNF331	NM_001253801	exon5	c.C1332T	p.C444C	GGAGTGCGGGAAG	.	40.0	2.0	49.0	0.0	.	66	.	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	hg19	19	57066068	57066068	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP28	NM_020828	exon8	c.C1914G	p.I638M	GAGAATCCATACT	.	109.0	31.0	77.0	0.0	.	99	.	.	Atlas-SNP
ZNF551	90233	hgsc.bcm.edu	hg19	19	58198344	58198344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZNF551	NM_138347	exon3	c.A701C	p.H234P	CAAGCCACAAACA	.	99.0	5.0	66.0	0.0	.	65	.	.	Atlas-SNP
SNAP25	6616	hgsc.bcm.edu	hg19	20	10277688	10277688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SNAP25	NM_003081	exon6	c.T397C	p.F133L	GGCGGCTTCATCC	.	104.0	5.0	106.0	0.0	.	79	.	.	Atlas-SNP
TTLL9	164395	hgsc.bcm.edu	hg19	20	30510809	30510809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TTLL9	NM_001008409	exon8	c.A617G	p.E206G	CCGTGGAGAACTA	.	124.0	6.0	84.0	0.0	.	95	.	.	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36874425	36874425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA1755	NM_001029864	exon2	c.T107C	p.L36P	GAGTCCAGGAGAC	.	88.0	4.0	86.0	0.0	.	145	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40052330	40052330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CHD6	NM_032221	exon30	c.A4357G	p.R1453G	GTTCTCTCCTAGT	.	119.0	5.0	142.0	0.0	.	312	.	.	Atlas-SNP
TOX2	84969	hgsc.bcm.edu	hg19	20	42694558	42694558	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	TOX2_ENST00000348077,colon,carcinoma,+2,14	TOX2	NM_001098797	exon7	c.C1167G	p.S389S	TGCGTCCCCGCCG	.	58.0	3.0	51.0	1.0	.	158	.	.	Atlas-SNP
KCNB1	3745	hgsc.bcm.edu	hg19	20	47990149	47990149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCNB1	NM_004975	exon2	c.T1948C	p.S650P	AACTAGAGTGCTG	.	64.0	5.0	49.0	0.0	.	142	.	.	Atlas-SNP
TMEM189	387521	hgsc.bcm.edu	hg19	20	48741638	48741638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TMEM189	NM_199129	exon6	c.A770G	p.K257R	CGAGGCTTCTCGC	.	100.0	4.0	82.0	0.0	.	15	.	.	Atlas-SNP
EDN3	1908	hgsc.bcm.edu	hg19	20	57896179	57896179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EDN3	NM_207034	exon3	c.G473T	p.R158L	ACTTGCGCTGCGC	.	187.0	66.0	127.0	0.0	.	83	.	.	Atlas-SNP
ZGPAT	84619	hgsc.bcm.edu	hg19	20	62340023	62340023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZGPAT	NM_032527	exon2	c.T91C	p.S31P	GATTCGTCTGAGC	.	122.0	5.0	89.0	0.0	.	57	.	.	Atlas-SNP
CCT8	10694	hgsc.bcm.edu	hg19	21	30439969	30439969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CCT8	NM_006585	exon4	c.G289A	p.V97I	CTCCAACTTCTTG	.	119.0	5.0	163.0	0.0	.	38	.	.	Atlas-SNP
KRTAP26-1	388818	hgsc.bcm.edu	hg19	21	31691918	31691918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KRTAP26-1	NM_203405	exon1	c.C436A	p.Q146K	AGAATTGGGGGCG	.	140.0	74.0	164.0	0.0	.	58	.	.	Atlas-SNP
SON	6651	hgsc.bcm.edu	hg19	21	34923955	34923955	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SON	NM_032195	exon3	c.A2418G	p.L806L	GATGTTAGCAACC	.	63.0	4.0	98.0	0.0	.	343	.	.	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	hg19	21	44838373	44838373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SIK1	NM_173354	exon12	c.G1511A	p.S504N	TCAGAGCTGGTTC	.	81.0	7.0	86.0	0.0	.	65	.	.	Atlas-SNP
TRAPPC10	7109	hgsc.bcm.edu	hg19	21	45499543	45499543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRAPPC10	NM_003274	exon12	c.A1568G	p.K523R	CAAGGAAGCAGCT	.	97.0	5.0	120.0	0.0	.	109	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26164940	26164940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MYO18B	NM_032608	exon4	c.A1057G	p.T353A	CCTCAGACCCAGA	.	80.0	4.0	92.0	0.0	.	322	.	.	Atlas-SNP
EWSR1	2130	hgsc.bcm.edu	hg19	22	29693819	29693819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EWSR1	NM_013986	exon14	c.A1312G	p.K438E	CCAGGGAAAGATT	.	85.0	4.0	84.0	0.0	.	104	.	.	Atlas-SNP
C22orf28	51493	hgsc.bcm.edu	hg19	22	32792236	32792236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	C22orf28	NM_014306	exon8	c.A815G	p.D272G	AGCGCATCTGGAA	.	138.0	6.0	105.0	0.0	.	43	.	.	Atlas-SNP
KCTD17	79734	hgsc.bcm.edu	hg19	22	37449146	37449146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCTD17	NM_024681	exon2	c.A217G	p.T73A	GATGAGACCGGGG	.	125.0	5.0	85.0	0.0	.	17	.	.	Atlas-SNP
RAC2	5880	hgsc.bcm.edu	hg19	22	37622734	37622734	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RAC2	NM_002872	exon6	c.G558A	p.K186K	GGCGCGCTTCTGC	.	70.0	24.0	55.0	0.0	.	22	.	.	Atlas-SNP
GCAT	23464	hgsc.bcm.edu	hg19	22	38208955	38208955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GCAT	NM_001171690	exon3	c.T467C	p.L156P	CCATCCTCTATCC	.	95.0	5.0	77.0	0.0	.	27	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40708594	40708594	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TNRC6B	NM_001162501	exon18	c.G4521T	p.G1507G	GCTGGGGGGTACA	.	116.0	46.0	123.0	0.0	.	195	.	.	Atlas-SNP
DESI1	27351	hgsc.bcm.edu	hg19	22	42003333	42003333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_015704	exon3	c.A113G	p.H38R	GATGTGTGCCTGT	.	86.0	5.0	56.0	0.0	.	.	.	.	Atlas-SNP
PACSIN2	11252	hgsc.bcm.edu	hg19	22	43284655	43284655	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PACSIN2	NM_007229	exon5	c.T603G	p.V201V	CTTAAGAACATCT	.	235.0	103.0	201.0	0.0	.	48	.	.	Atlas-SNP
MCAT	27349	hgsc.bcm.edu	hg19	22	43538972	43538972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	MCAT,bladder,carcinoma,0,1	MCAT	NM_014507	exon1	c.C383T	p.S128L	GCCAGCGATGCCA	.	197.0	70.0	136.0	0.0	.	26	.	.	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	hg19	22	43614330	43614330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SCUBE1	NM_173050	exon15	c.A1822G	p.R608G	CTGGCCTCTGGGC	.	146.0	6.0	89.0	0.0	.	105	.	.	Atlas-SNP
DENND6B	414918	hgsc.bcm.edu	hg19	22	50752089	50752089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001001794	exon15	c.T1268C	p.L423P	TGGGTGAGCTCCA	.	65.0	5.0	55.0	0.0	.	.	.	.	Atlas-SNP
STS	412	hgsc.bcm.edu	hg19	X	7268085	7268085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STS	NM_000351	exon10	c.G1535A	p.R512K	GAGAGAGAAACCC	.	67.0	6.0	43.0	0.0	.	64	.	.	Atlas-SNP
ARHGAP6	395	hgsc.bcm.edu	hg19	X	11682867	11682867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ARHGAP6	NM_006125	exon1	c.T82C	p.S28P	TCTTGGAGAAGCC	.	70.0	4.0	50.0	0.0	.	130	.	.	Atlas-SNP
EGFL6	25975	hgsc.bcm.edu	hg19	X	13624532	13624532	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EGFL6	NM_001167890	exon6	c.T555C	p.C185C	CATCTGTCCCTAC	.	88.0	5.0	95.0	0.0	.	111	.	.	Atlas-SNP
RBBP7	5931	hgsc.bcm.edu	hg19	X	16876872	16876872	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBBP7	NM_001198719	exon4	c.T540C	p.P180P	GATGTGAGGATTC	.	86.0	4.0	81.0	0.0	.	58	.	.	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23411617	23411617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PTCHD1	NM_173495	exon3	c.T1982C	p.L661P	AAGAACTCTATGA	.	94.0	6.0	86.0	0.0	.	213	.	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	hg19	X	37026590	37026590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM47C	NM_001013736	exon1	c.G107A	p.R36K	AGCACAGGCGCCT	.	313.0	218.0	281.0	0.0	.	267	.	.	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53115071	53115071	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TSPYL2	NM_022117	exon6	c.T1497C	p.A499A	GAGTGCTGATGAC	.	76.0	4.0	78.0	0.0	.	53	.	.	Atlas-SNP
KDM5C	8242	hgsc.bcm.edu	hg19	X	53228324	53228324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KDM5C	NM_004187	exon15	c.A2078G	p.E693G	TCTCGCTCAGCCT	.	123.0	6.0	101.0	0.0	.	385	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	69964030	69964030	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TEX11	NM_001003811	exon11	c.T777C	p.T259T	TGGCCCAGTAGAT	.	99.0	6.0	108.0	0.0	.	132	.	.	Atlas-SNP
ATP7A	538	hgsc.bcm.edu	hg19	X	77284804	77284804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ATP7A	NM_000052	exon15	c.T2974C	p.S992P	CAAGCCTCTATCA	.	106.0	5.0	84.0	0.0	.	248	.	.	Atlas-SNP
TBX22	50945	hgsc.bcm.edu	hg19	X	79282219	79282219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TBX22	NM_016954	exon5	c.T650C	p.M217T	AATCCATGCATAA	.	63.0	44.0	71.0	0.0	.	118	.	.	Atlas-SNP
FAM46D	169966	hgsc.bcm.edu	hg19	X	79699173	79699173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FAM46D	NM_001170574	exon5	c.C1135T	p.P379S	TACCACCCACTGC	.	33.0	5.0	44.0	0.0	.	69	.	.	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	hg19	X	79947359	79947359	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	BRWD3	NM_153252	exon30	c.A3444G	p.E1148E	AACCCGTTCACAT	.	87.0	5.0	76.0	0.0	.	251	.	.	Atlas-SNP
DIAPH2	1730	hgsc.bcm.edu	hg19	X	96167500	96167500	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DIAPH2	NM_007309	exon7	c.G681A	p.K227K	TGACAAGAAGAAT	.	75.0	4.0	66.0	0.0	.	148	.	.	Atlas-SNP
GPRASP1	9737	hgsc.bcm.edu	hg19	X	101910325	101910325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPRASP1	NM_001099411	exon3	c.A1484G	p.Q495R	ATGAACAGGTCAT	.	113.0	5.0	94.0	0.0	.	140	.	.	Atlas-SNP
GUCY2F	2986	hgsc.bcm.edu	hg19	X	108708492	108708492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GUCY2F	NM_001522	exon3	c.T911C	p.L304P	TCCCGGAGCTTTG	.	114.0	6.0	98.0	0.0	.	178	.	.	Atlas-SNP
TRPC5	7224	hgsc.bcm.edu	hg19	X	111090642	111090642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRPC5	NM_012471	exon6	c.A1400G	p.E467G	CATTCCTCCCTTG	.	27.0	4.0	24.0	0.0	.	142	.	.	Atlas-SNP
XIAP	331	hgsc.bcm.edu	hg19	X	123019618	123019618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	XIAP	NM_001204401	exon2	c.T106C	p.F36L	GCTAATTTTCCAA	.	62.0	4.0	54.0	0.0	.	56	.	.	Atlas-SNP
UTP14A	10813	hgsc.bcm.edu	hg19	X	129055252	129055252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	UTP14A	NM_006649	exon11	c.A1037G	p.E346G	AGGAAGAGGAGGG	.	124.0	6.0	118.0	0.0	.	74	.	.	Atlas-SNP
RBMX2	51634	hgsc.bcm.edu	hg19	X	129546386	129546386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	RBMX2	NM_016024	exon6	c.A533G	p.E178G	ACCGGGAGGTACA	.	130.0	6.0	101.0	0.0	.	46	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135438310	135438310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPR112	NM_153834	exon9	c.A6913G	p.M2305V	ATGGTCATGGATC	.	73.0	4.0	73.0	0.0	.	459	.	.	Atlas-SNP
SOX3	6658	hgsc.bcm.edu	hg19	X	139586972	139586972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SOX3	NM_005634	exon1	c.A254G	p.K85R	GGGTTCTTGAGTT	.	26.0	4.0	28.0	0.0	.	44	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142717685	142717685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SLITRK4	NM_001184750	exon2	c.A1240G	p.T414A	TCACTGTAATTTG	.	109.0	81.0	117.0	0.0	.	162	.	.	Atlas-SNP
PNMA3	29944	hgsc.bcm.edu	hg19	X	152226282	152226282	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PNMA3	NM_013364	exon2	c.T870C	p.N290N	CGTGAATCAGACT	.	83.0	4.0	90.0	0.0	.	81	.	.	Atlas-SNP
GPAM	57678	hgsc.bcm.edu	hg19	10	113920573	113920585	+	Frame_Shift_Del	DEL	GACTTCCTCTTTC	GACTTCCTCTTTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	GACTTCCTCTTTC	GACTTCCTCTTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_001244949	exon16	c.1537_1549del	p.513_517del	.	.	96.0	12.0	115.0	0.0	.	68	.	.	Atlas-INDEL
GMEB2	26205	hgsc.bcm.edu	hg19	20	62221981	62221981	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GMEB2	NM_012384	exon10	c.1055delT	p.L352fs	.	.	147.0	10.0	71.0	0.0	.	44	.	.	Atlas-INDEL
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126059515	126059515	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KIAA0196	NM_014846	exon20	c.2439delT	p.P813fs	.	.	141.0	10.0	123.0	0.0	.	90	.	.	Atlas-INDEL
MED1	5469	hgsc.bcm.edu	hg19	17	37565247	37565247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MED1	NM_004774	exon17	c.3228delG	p.K1076fs	.	.	117.0	10.0	110.0	0.0	.	123	.	.	Atlas-INDEL
ZFP36	7538	hgsc.bcm.edu	hg19	19	39899237	39899239	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ZFP36	NM_003407	exon2	c.896_898del	p.299_300del	.	.	93.0	21.0	84.0	0.0	.	19	.	.	Atlas-INDEL
FGD6	55785	hgsc.bcm.edu	hg19	12	95603722	95603722	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FGD6	NM_018351	exon2	c.1339delA	p.I447X	.	.	163.0	11.0	103.0	0.0	.	127	.	.	Atlas-INDEL
REXO4	57109	hgsc.bcm.edu	hg19	9	136277557	136277557	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	REXO4	NM_020385	exon4	c.773delA	p.E258fs	.	.	152.0	10.0	113.0	0.0	.	27	.	.	Atlas-INDEL
DCAF4L2	138009	hgsc.bcm.edu	hg19	8	88885079	88885079	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DCAF4L2	NM_152418	exon1	c.1122delC	p.G374fs	.	.	172.0	13.0	75.0	0.0	.	187	.	.	Atlas-INDEL
MINK1	50488	hgsc.bcm.edu	hg19	17	4791017	4791017	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	MINK1	NM_170663	exon12	c.1161delC	p.I387fs	.	.	145.0	11.0	95.0	0.0	.	110	.	.	Atlas-INDEL
USP54	159195	hgsc.bcm.edu	hg19	10	75264616	75264616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	USP54	NM_152586	exon20	c.4304delA	p.H1435fs	.	.	166.0	10.0	130.0	0.0	.	178	.	.	Atlas-INDEL
EYA1	2138	hgsc.bcm.edu	hg19	8	72267072	72267072	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EYA1	NM_172059	exon2	c.70delA	p.K24fs	.	.	177.0	11.0	127.0	0.0	.	108	.	.	Atlas-INDEL
EFNB2	1948	hgsc.bcm.edu	hg19	13	107148141	107148141	+	Frame_Shift_Del	DEL	C	C	-	rs35501472		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	EFNB2	NM_004093	exon3	c.455delT	p.V152fs	.	.	120.0	10.0	105.0	0.0	.	39	.	.	Atlas-INDEL
PPP1R15B	84919	hgsc.bcm.edu	hg19	1	204378837	204378837	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PPP1R15B	NM_032833	exon1	c.1704delT	p.P568fs	.	.	163.0	10.0	115.0	0.0	.	67	.	.	Atlas-INDEL
PDZD2	23037	hgsc.bcm.edu	hg19	5	32090198	32090198	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PDZD2	NM_178140	exon19	c.6643delA	p.T2215fs	.	.	166.0	10.0	91.0	0.0	.	306	.	.	Atlas-INDEL
VSTM4	196740	hgsc.bcm.edu	hg19	10	50315774	50315774	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	VSTM4	NM_144984	exon2	c.323delC	p.A108fs	.	.	145.0	10.0	111.0	0.0	.	83	.	.	Atlas-INDEL
PITPNA	5306	hgsc.bcm.edu	hg19	17	1444911	1444911	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PITPNA	NM_006224	exon6	c.322delC	p.L108X	.	.	177.0	11.0	146.0	0.0	.	14	.	.	Atlas-INDEL
PSMB10	5699	hgsc.bcm.edu	hg19	16	67970637	67970637	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PSMB10	NM_002801	exon1	c.17delT	p.L6fs	.	.	156.0	10.0	121.0	0.0	.	19	.	.	Atlas-INDEL
DOCK9	23348	hgsc.bcm.edu	hg19	13	99567709	99567709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DOCK9	NM_001130049	exon8	c.770delG	p.S257fs	.	.	148.0	10.0	118.0	0.0	.	311	.	.	Atlas-INDEL
SIL1	64374	hgsc.bcm.edu	hg19	5	138362514	138362514	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	SIL1	NM_001037633	exon7	c.622delG	p.D208fs	.	.	194.0	13.0	108.0	0.0	.	31	.	.	Atlas-INDEL
FOXK2	3607	hgsc.bcm.edu	hg19	17	80544026	80544026	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FOXK2	NM_004514	exon7	c.1525delG	p.A509fs	.	.	166.0	10.0	81.0	0.0	.	46	.	.	Atlas-INDEL
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57081166	57081166	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	TNKS1BP1,NS,carcinoma,0,1	TNKS1BP1	NM_033396	exon5	c.997delG	p.A333fs	.	.	208.0	13.0	194.0	0.0	.	148	.	.	Atlas-INDEL
TENM2	57451	hgsc.bcm.edu	hg19	5	167675302	167675302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001122679	exon27	c.7330delG	p.A2444fs	.	.	121.0	10.0	82.0	0.0	.	.	.	.	Atlas-INDEL
POGLUT1	56983	hgsc.bcm.edu	hg19	3	119187934	119187934	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	POGLUT1	NM_152305	exon1	c.65delA	p.Q22fs	.	.	178.0	11.0	108.0	0.0	.	32	.	.	Atlas-INDEL
ANXA8L2	244	hgsc.bcm.edu	hg19	10	47756662	47756662	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ANXA8L2	NM_001630	exon8	c.575delA	p.N192fs	.	.	161.0	10.0	136.0	0.0	.	8	.	.	Atlas-INDEL
PRKRA	8575	hgsc.bcm.edu	hg19	2	179300978	179300978	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	PRKRA	NM_003690	exon7	c.679delA	p.N227fs	.	.	130.0	17.0	149.0	0.0	.	56	.	.	Atlas-INDEL
HCFC1	3054	hgsc.bcm.edu	hg19	X	153217070	153217070	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HCFC1	NM_005334	exon21	c.5350delG	p.V1784fs	.	.	166.0	10.0	110.0	0.0	.	284	.	.	Atlas-INDEL
STAG2	10735	hgsc.bcm.edu	hg19	X	123224569	123224569	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	STAG2	NM_001042749	exon31	c.3421delG	p.V1141fs	.	.	129.0	10.0	120.0	0.0	.	309	.	.	Atlas-INDEL
KCNA3	3738	hgsc.bcm.edu	hg19	1	111216834	111216834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	KCNA3	NM_002232	exon1	c.599delA	p.D200fs	.	.	109.0	55.0	69.0	0.0	.	91	.	.	Atlas-Indel,Pindel
TRIM33	51592	hgsc.bcm.edu	hg19	1	114973529	114973530	+	Frame_Shift_Ins	INS	-	-	CAAC	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIM33	NM_033020	exon6	c.1046_1047insGTTG	p.K349_E350delinsSX	.	.	148.0	11.0	172.0	0.0	.	115	.	.	Atlas-INDEL
GPAM	57678	hgsc.bcm.edu	hg19	10	113920588	113920593	+	In_Frame_Del	DEL	CACAAA	CACAAA	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	CACAAA	CACAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_001244949	exon16	c.1529_1534del	p.510_512del	.	.	84.0	12.0	91.0	0.0	.	68	.	.	Atlas-INDEL
HRNR	388697	hgsc.bcm.edu	hg19	1	152189562	152189562	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	HRNR	NM_001009931	exon3	c.4544delG	p.S1515fs	.	.	15.0	13.0	6.0	1.0	.	403	.	.	Atlas-INDEL
OR8G5	219865	hgsc.bcm.edu	hg19	11	124134838	124134838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	.	NM_001005198	exon1	c.115delG	p.E39fs	.	.	179.0	11.0	164.0	0.0	.	.	.	.	Atlas-INDEL
FCGBP	8857	hgsc.bcm.edu	hg19	19	40433636	40433636	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	FCGBP	NM_003890	exon2	c.634delT	p.S212fs	.	.	154.0	10.0	159.0	0.0	.	416	.	.	Atlas-INDEL
CLDN16	10686	hgsc.bcm.edu	hg19	3	190106065	190106065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	CLDN16	NM_006580	exon1	c.156delT	p.S52fs	.	.	211.0	10.0	204.0	0.0	.	59	.	.	Pindel
GPAM	57678	hgsc.bcm.edu	hg19	10	113920573	113920593	+	In_Frame_Del	DEL	GACTTCCTCTTTCATCACAAA	GACTTCCTCTTTCATCACAAA	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	GACTTCCTCTTTCATCACAAA	GACTTCCTCTTTCATCACAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	GPAM	NM_001244949	exon16	c.1529_1549del	p.510_517del	.	.	97.0	11.0	99.0	0.0	.	68	.	.	Pindel
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	hg19	5	139928556	139928556	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	ANKHD1-EIF4EBP3	NM_020690	exon35	c.7744delA	p.T2582fs	.	.	238.0	10.0	146.0	0.0	.	179	.	.	Pindel
DNAJC19	131118	hgsc.bcm.edu	hg19	3	180702431	180702431	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	DNAJC19	NM_145261	exon6	c.349delT	p.X117E	.	.	241.0	10.0	291.0	0.0	.	4	.	.	Pindel
TRIM33	51592	hgsc.bcm.edu	hg19	1	114973529	114973563	+	Frame_Shift_Del	DEL	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	-	novel		TCGA-DD-A3A1-01A-11D-A20W-10	TCGA-DD-A3A1-11A-11D-A20W-10	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2249a54-91a5-4996-aa54-8ba33cba817c	c6b1efb7-67ef-47f9-afdd-cad7f1d19a46	.	TRIM33	NM_033020	exon6	c.1041_1047del	p.347_349del	.	.	132.0	12.0	145.0	0.0	.	115	.	.	Pindel
