Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
WASF2	10163	hgsc.bcm.edu	hg19	1	27734780	27734780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WASF2	NM_006990	exon9	c.A1400G	p.N467S	ACGTCATTGCCCA	.	88.0	35.0	119.0	0.0	.	41	.	.	Atlas-SNP
BAI2	576	hgsc.bcm.edu	hg19	1	32206014	32206014	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BAI2	NM_001703	exon12	c.C1923T	p.D641D	CAGAATGTCCACA	.	65.0	22.0	88.0	0.0	.	128	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52272522	52272522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NRD1	NM_002525	exon20	c.A2258G	p.N753S	GGAGTATTCACAA	.	205.0	80.0	288.0	0.0	.	89	.	.	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	hg19	1	152191055	152191055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRNR	NM_001009931	exon3	c.G3050C	p.G1017A	CCGGAACCAGACC	.	274.0	23.0	187.0	0.0	.	403	.	.	Atlas-SNP
LCE6A	448835	hgsc.bcm.edu	hg19	1	152816050	152816050	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LCE6A	NM_001128600	exon2	c.C54T	p.S18S	ATGCTCCCCTCCC	.	211.0	43.0	164.0	0.0	.	10	.	.	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155823310	155823310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GON4L	NM_001037533	exon2	c.A262C	p.N88H	GTACATTTGTGTT	.	382.0	33.0	190.0	0.0	.	392	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669566	158669566	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR6K2	NM_001005279	exon1	c.C877T	p.L293L	TCCTCAGGCTATA	.	232.0	157.0	194.0	0.0	.	104	.	.	Atlas-SNP
PBX1	5087	hgsc.bcm.edu	hg19	1	164789392	164789392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PBX1	NM_001204963	exon7	c.G1081A	p.A361T	CAAGGGGCCCAGG	.	160.0	25.0	153.0	0.0	.	60	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229636533	229636533	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUP133	NM_018230	exon4	c.T483C	p.S161S	GGGAGAAGAGTAA	.	102.0	22.0	41.0	0.0	.	111	.	.	Atlas-SNP
ASAP2	8853	hgsc.bcm.edu	hg19	2	9508603	9508603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ASAP2	NM_001135191	exon16	c.G1511A	p.C504Y	AATGTTGCCTACC	.	78.0	30.0	86.0	0.0	.	91	.	.	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9630394	9630394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM17	NM_003183	exon19	c.C2387T	p.T796M	TGGTCCGTGAGAT	.	133.0	61.0	153.0	0.0	.	61	.	.	Atlas-SNP
CLEC4F	165530	hgsc.bcm.edu	hg19	2	71043463	71043463	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CLEC4F	NM_173535	exon4	c.C1050T	p.G350G	CAGACGGCCATTT	.	179.0	69.0	213.0	0.0	.	95	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73679731	73679731	+	Missense_Mutation	SNP	A	A	G	rs367904732		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.A6074G	p.K2025R	AGCCCAAGATTTC	.	80.0	33.0	136.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73679798	73679798	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ALMS1	NM_015120	exon8	c.T6141A	p.Y2047X	TTCCTATTCTCAA	.	86.0	35.0	144.0	0.0	.	384	.	.	Atlas-SNP
ANKRD36	375248	hgsc.bcm.edu	hg19	2	97869996	97869996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ANKRD36	NM_001164315	exon50	c.G3057T	p.R1019S	AACTAGGACAGGT	.	58.0	11.0	58.0	0.0	.	170	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162799343	162799343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC4A10	NM_001178015	exon16	c.T2039G	p.L680W	GCACATTGAAGGA	.	61.0	23.0	34.0	0.0	.	309	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	ACCTTCATAGACC	.	338.0	77.0	253.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196682482	196682482	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNAH7	NM_018897	exon50	c.A9363G	p.Q3121Q	CCTTTCTTGTGCC	.	135.0	42.0	84.0	0.0	.	512	.	.	Atlas-SNP
IQCF1	132141	hgsc.bcm.edu	hg19	3	51937031	51937031	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	IQCF1,NS,carcinoma,0,1	IQCF1	NM_152397	exon2	c.T78C	p.H26H	GGACAAATGGGTT	.	240.0	84.0	296.0	0.0	.	26	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	156234115	156234115	+	Missense_Mutation	SNP	G	G	A	rs370046885		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KCNAB1	NM_172160	exon11	c.G922A	p.G308R	AAATACGGAAACG	.	72.0	34.0	104.0	0.0	.	176	.	.	Atlas-SNP
SLC26A1	10861	hgsc.bcm.edu	hg19	4	982779	982779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC26A1	NM_022042	exon3	c.A1948C	p.S650R	GCGGGCTGCAGCA	.	45.0	16.0	46.0	0.0	.	44	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5578055	5578055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EVC2	NM_147127	exon18	c.G3184T	p.G1062W	CCTCCCCAGGTTC	.	55.0	6.0	79.0	0.0	.	202	.	.	Atlas-SNP
NCAPG	64151	hgsc.bcm.edu	hg19	4	17841380	17841380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NCAPG	NM_022346	exon17	c.T2548C	p.Y850H	CGAGTCTATACAA	.	77.0	22.0	131.0	0.0	.	76	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	42965098	42965098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.G574T	p.V192F	CGACGAGTTTCTG	.	158.0	34.0	228.0	0.0	.	78	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	42965111	42965111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRXCR1	NM_001080476	exon2	c.C587T	p.P196L	AAGCTCCTTCCCT	.	155.0	33.0	229.0	0.0	.	78	.	.	Atlas-SNP
BMP3	651	hgsc.bcm.edu	hg19	4	81967179	81967179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BMP3	NM_001201	exon2	c.A604G	p.I202V	AAAGATATCACTC	.	47.0	23.0	76.0	0.0	.	59	.	.	Atlas-SNP
EMCN	51705	hgsc.bcm.edu	hg19	4	101331438	101331438	+	Splice_Site	SNP	C	C	T	rs374744629		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	EMCN	NM_016242	exon12	c.825+1G>A	.	AACTTACGTAATT	.	55.0	26.0	98.0	0.0	.	37	.	.	Atlas-SNP
PRDM5	11107	hgsc.bcm.edu	hg19	4	121737607	121737607	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PRDM5	NM_018699	exon8	c.865+1G>T	.	TCCTCACCAGTGT	.	85.0	36.0	116.0	0.0	.	76	.	.	Atlas-SNP
RNF175	285533	hgsc.bcm.edu	hg19	4	154649420	154649420	+	Missense_Mutation	SNP	C	C	T	rs370409419		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	RNF175_ENST00000347063,NS,carcinoma,0,3	RNF175	NM_173662	exon4	c.G340A	p.V114I	TAATAACGGAGAA	.	62.0	31.0	82.0	0.0	.	40	.	.	Atlas-SNP
CDH6	1004	hgsc.bcm.edu	hg19	5	31294184	31294184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CDH6	NM_004932	exon3	c.G344A	p.R115K	CCAAGAGGCTGGA	.	143.0	12.0	112.0	0.0	.	175	.	.	Atlas-SNP
JMY	133746	hgsc.bcm.edu	hg19	5	78610232	78610232	+	Missense_Mutation	SNP	A	A	C	rs376215787	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	JMY	NM_152405	exon9	c.A2217C	p.E739D	GGGAGAAGGAAGA	.	160.0	70.0	131.0	0.0	.	82	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86685321	86685321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RASA1	NM_002890	exon24	c.A3037G	p.S1013G	ACGCTCAGTAATG	.	115.0	31.0	101.0	0.0	.	213	.	.	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	hg19	5	102440400	102440400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	GIN1,NS,carcinoma,0,1	GIN1	NM_017676	exon4	c.A484G	p.I162V	TGATTATAGCATA	.	166.0	36.0	151.0	0.0	.	53	.	.	Atlas-SNP
ETF1	2107	hgsc.bcm.edu	hg19	5	137844022	137844022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ETF1	NM_004730	exon11	c.A1286T	p.D429V	AATTCATCGTCTC	.	77.0	14.0	60.0	0.0	.	38	.	.	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	hg19	5	140187339	140187339	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHA4	NM_031500	exon1	c.A567G	p.V189V	GCTGGTAAAAGGT	.	191.0	49.0	171.0	0.0	.	419	.	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	hg19	5	140724102	140724102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PCDHGA3	NM_032011	exon1	c.C502A	p.Q168K	TCCCTGCAGAACT	.	149.0	34.0	113.0	0.0	.	246	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	hg19	5	156727773	156727773	+	Silent	SNP	C	C	G	rs375762537	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CYFIP2	NM_001037332	exon6	c.C438G	p.A146A	CCATGCCGAGCGC	.	133.0	86.0	112.0	0.0	.	354	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167420042	167420042	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001122679	exon5	c.C1041G	p.P347P	CACGCCCCCGCCC	.	122.0	52.0	128.0	0.0	.	.	.	.	Atlas-SNP
FOXI1	2299	hgsc.bcm.edu	hg19	5	169535372	169535372	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FOXI1	NM_012188	exon2	c.C894A	p.P298P	CCACCCCTTGGTC	.	128.0	29.0	109.0	0.0	.	70	.	.	Atlas-SNP
MSX2	4488	hgsc.bcm.edu	hg19	5	174151962	174151962	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MSX2	NM_002449	exon1	c.G300A	p.E100E	CTTCGAGACCGCC	.	35.0	7.0	39.0	0.0	.	24	.	.	Atlas-SNP
HK3	3101	hgsc.bcm.edu	hg19	5	176308352	176308352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HK3	NM_002115	exon18	c.C2578A	p.L860M	CTGCCAGCTCTTC	.	84.0	21.0	59.0	0.0	.	210	.	.	Atlas-SNP
MB21D1	115004	hgsc.bcm.edu	hg19	6	74161257	74161257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MB21D1	NM_138441	exon1	c.G648T	p.E216D	CACGTGCTCATAG	.	56.0	19.0	63.0	0.0	.	33	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76376480	76376480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.A1047T	p.E349D	AAGAGAAAGCATA	.	44.0	19.0	71.0	0.0	.	189	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76376481	76376481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.A1048C	p.S350R	AGAGAAAGCATAT	.	45.0	19.0	72.0	0.0	.	189	.	.	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	hg19	7	1525069	1525069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	INTS1	NM_001080453	exon23	c.G3013T	p.D1005Y	CCCCGTCCCGCAG	.	47.0	33.0	40.0	0.0	.	145	.	.	Atlas-SNP
KLHL7	55975	hgsc.bcm.edu	hg19	7	23207527	23207527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KLHL7	NM_001031710	exon9	c.T1250C	p.L417P	GCATGCTGACCCA	.	158.0	32.0	127.0	0.0	.	102	.	.	Atlas-SNP
NPVF	64111	hgsc.bcm.edu	hg19	7	25267920	25267920	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPVF	NM_022150	exon2	c.138+1G>A	.	AACTTACCTCAGA	.	245.0	63.0	154.0	0.0	.	36	.	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	hg19	7	45124554	45124554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NACAD	NM_001146334	exon2	c.C1225T	p.P409S	CATGGGGCTCCCC	.	79.0	20.0	62.0	0.0	.	44	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51098538	51098538	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	COBL	NM_015198	exon9	c.C1475G	p.T492S	GCAAGGGTTTTAC	.	201.0	54.0	191.0	0.0	.	167	.	.	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	hg19	7	70228060	70228060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AUTS2	NM_001127231	exon7	c.G947A	p.R316Q	AACTCCGAGCTCC	.	67.0	11.0	66.0	0.0	.	173	.	.	Atlas-SNP
ADAM22	53616	hgsc.bcm.edu	hg19	7	87780308	87780308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ADAM22	NM_021722	exon19	c.A1579T	p.I527F	CCTAATATTCATA	.	220.0	83.0	314.0	0.0	.	280	.	.	Atlas-SNP
TAS2R38	5726	hgsc.bcm.edu	hg19	7	141672569	141672569	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAS2R38	NM_176817	exon1	c.T921A	p.A307A	CATCACAGCTCTC	.	67.0	23.0	98.0	0.0	.	51	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151970850	151970850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL3	NM_170606	exon7	c.C952A	p.Q318K	AATCCTGAAAGGT	.	334.0	20.0	484.0	0.0	.	1564	.	.	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	hg19	8	123963936	123963936	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZHX2	NM_014943	exon3	c.G186A	p.E62E	GATAGAGGTGAAA	.	82.0	16.0	62.0	0.0	.	106	.	.	Atlas-SNP
FAM122A	116224	hgsc.bcm.edu	hg19	9	71395649	71395649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	FAM122A	NM_138333	exon1	c.C569A	p.P190H	AGAGCCCCATCAA	.	118.0	49.0	155.0	0.0	.	14	.	.	Atlas-SNP
ZFP37	7539	hgsc.bcm.edu	hg19	9	115805121	115805121	+	Nonsense_Mutation	SNP	G	G	A	rs373174435		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ZFP37	NM_003408	exon4	c.C1777T	p.R593X	GGGATCGCTGATG	.	102.0	39.0	126.0	0.0	.	93	.	.	Atlas-SNP
TAF3	83860	hgsc.bcm.edu	hg19	10	8006438	8006438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TAF3	NM_031923	exon3	c.A965G	p.K322R	GTCCCAAGAGCCC	.	42.0	18.0	47.0	0.0	.	93	.	.	Atlas-SNP
LYZL1	84569	hgsc.bcm.edu	hg19	10	29581509	29581509	+	Silent	SNP	C	C	T	rs141824789		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	LYZL1,NS,adenocarcinoma,0,1	LYZL1	NM_032517	exon3	c.C339T	p.D113D	GGATGACGGCAGC	.	89.0	5.0	140.0	0.0	.	25	.	C|1.000;T|0.000	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	hg19	10	70508892	70508892	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CCAR1	NM_018237	exon9	c.827-1G>T	.	TTTAAAGCTGGTT	.	48.0	24.0	34.0	0.0	.	118	.	.	Atlas-SNP
CCAR1	55749	hgsc.bcm.edu	hg19	10	70508893	70508893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CCAR1	NM_018237	exon9	c.C827T	p.A276V	TTAAAGCTGGTTT	.	49.0	24.0	34.0	0.0	.	118	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6579425	6579425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DNHD1	NM_144666	exon25	c.C8900T	p.P2967L	GTTTCCCTGGCCA	.	45.0	16.0	61.0	0.0	.	198	.	.	Atlas-SNP
MYOD1	4654	hgsc.bcm.edu	hg19	11	17742472	17742472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYOD1	NM_002478	exon2	c.C654A	p.S218R	CCCGAGCGGCGCC	.	40.0	24.0	41.0	0.0	.	50	.	.	Atlas-SNP
OR5T3	390154	hgsc.bcm.edu	hg19	11	56019970	56019970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T3	NM_001004747	exon1	c.T295A	p.L99M	TCATTCTTGGATG	.	155.0	61.0	284.0	0.0	.	98	.	.	Atlas-SNP
SLC29A2	3177	hgsc.bcm.edu	hg19	11	66135010	66135010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SLC29A2	NM_001532	exon7	c.C658T	p.R220C	AGTAGCGGGCAAA	.	84.0	30.0	97.0	0.0	.	24	.	.	Atlas-SNP
PRKRIR	5612	hgsc.bcm.edu	hg19	11	76063257	76063257	+	Missense_Mutation	SNP	T	T	C	rs148924079		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	PRKRIR,NS,carcinoma,0,1	PRKRIR	NM_004705	exon5	c.A937G	p.M313V	TTATCATAGTGTG	.	347.0	129.0	425.0	0.0	.	65	.	T|1.000;C|0.000	Atlas-SNP
USP35	57558	hgsc.bcm.edu	hg19	11	77920573	77920573	+	Missense_Mutation	SNP	C	C	A	rs202205531	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP35	NM_020798	exon10	c.C1672A	p.P558T	GAGGAGCCCCCGG	.	93.0	39.0	96.0	0.0	.	179	.	C|0.999;T|0.001	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105789505	105789505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GRIA4	NM_001077243	exon11	c.A1337G	p.Y446C	AAGGATACTGTGT	.	81.0	32.0	121.0	0.0	.	380	.	.	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	hg19	11	122931847	122931847	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HSPA8	NM_006597	exon2	c.C186T	p.N62N	GGTGGGGTTCATT	.	44.0	6.0	62.0	0.0	.	168	.	.	Atlas-SNP
GLB1L3	112937	hgsc.bcm.edu	hg19	11	134158769	134158769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLB1L3	NM_001080407	exon7	c.G714A	p.M238I	ATACATGCCGTAT	.	28.0	11.0	38.0	0.0	.	102	.	.	Atlas-SNP
USP5	8078	hgsc.bcm.edu	hg19	12	6973284	6973284	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	USP5	NM_001098536	exon17	c.T2169G	p.P723P	CCCCCCTCCTGAG	.	21.0	14.0	73.0	0.0	.	124	.	.	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14631250	14631250	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ATF7IP	NM_018179	exon12	c.2942-1G>T	.	CTAACAGACCCCA	.	39.0	24.0	100.0	0.0	.	136	.	.	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14631251	14631251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ATF7IP	NM_018179	exon12	c.A2942C	p.D981A	TAACAGACCCCAA	.	39.0	24.0	101.0	0.0	.	136	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40687370	40687370	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LRRK2	NM_198578	exon21	c.A2713T	p.K905X	CTTGTGAAAAAGA	.	138.0	101.0	118.0	0.0	.	763	.	.	Atlas-SNP
PDZRN4	29951	hgsc.bcm.edu	hg19	12	41957413	41957413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PDZRN4	NM_001164595	exon8	c.A1429G	p.K477E	GAGTGTAAGAGAA	.	98.0	66.0	93.0	0.0	.	346	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49416062	49416062	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MLL2	NM_003482	exon53	c.16412+1G>T	.	CTCTCACCTGGCA	.	87.0	18.0	66.0	0.0	.	1173	.	.	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	hg19	12	113304627	113304627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RPH3A	NM_001143854	exon7	c.C426G	p.I142M	CAAAATCTGCATT	.	60.0	12.0	60.0	0.0	.	98	.	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	hg19	13	33681023	33681023	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STARD13	NM_178006	exon13	c.C3096G	p.L1032L	CACGGAGAGGGAC	.	60.0	15.0	99.0	0.0	.	100	.	.	Atlas-SNP
WDFY2	115825	hgsc.bcm.edu	hg19	13	52301872	52301872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	WDFY2	NM_052950	exon6	c.C544A	p.L182I	ACAATCCTCAAAC	.	62.0	14.0	64.0	0.0	.	36	.	.	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111927941	111927941	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	ARHGEF7	NM_001113511	exon13	c.C1398A	p.I466I	AGCCATCCGGAAC	.	118.0	32.0	117.0	0.0	.	157	.	.	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67346716	67346716	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GPHN	NM_001024218	exon5	c.A354T	p.G118G	GATGGGATCACTT	.	42.0	29.0	118.0	0.0	.	79	.	.	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51839582	51839582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	DMXL2,NS,carcinoma,0,1	DMXL2	NM_001174117	exon7	c.G591A	p.W197X	AGGATACCACACT	.	67.0	14.0	72.0	0.0	.	262	.	.	Atlas-SNP
LACTB	114294	hgsc.bcm.edu	hg19	15	63419842	63419842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LACTB	NM_171846	exon4	c.T906G	p.I302M	TTCAATTGAATCC	.	101.0	42.0	131.0	0.0	.	29	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72338583	72338583	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	MYO9A	NM_006901	exon2	c.A322C	p.R108R	TCTCTCTCAGAAG	.	101.0	47.0	105.0	0.0	.	203	.	.	Atlas-SNP
LMF1	64788	hgsc.bcm.edu	hg19	16	904604	904604	+	Missense_Mutation	SNP	G	G	T	rs201312320	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	LMF1	NM_022773	exon11	c.C1632A	p.F544L	CGGAGGGAAGTAG	.	34.0	16.0	36.0	0.0	.	42	.	G|0.998;A|0.002	Atlas-SNP
PPL	5493	hgsc.bcm.edu	hg19	16	4935181	4935181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PPL	NM_002705	exon22	c.T3475C	p.W1159R	AGGCCCATATCTT	.	68.0	25.0	117.0	0.0	.	168	.	.	Atlas-SNP
C16orf89	146556	hgsc.bcm.edu	hg19	16	5108602	5108602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	C16orf89	NM_001098514	exon4	c.C519G	p.S173R	CTCGCTGCTGTCC	.	28.0	9.0	20.0	0.0	.	64	.	.	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	hg19	16	23646316	23646316	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PALB2	NM_024675	exon4	c.A1551G	p.K517K	GGCTGATTTTCTT	.	133.0	58.0	153.0	0.0	.	108	.	.	Atlas-SNP
KDM8	79831	hgsc.bcm.edu	hg19	16	27225073	27225073	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_024773	exon3	c.665+1G>C	.	GTGGAGGTGGGTG	.	48.0	17.0	59.0	0.0	.	.	.	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	hg19	16	57054706	57054706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NLRC5	NM_032206	exon2	c.C82A	p.L28M	GAATGGCTGAACG	.	55.0	14.0	73.0	0.0	.	186	.	.	Atlas-SNP
TPPP3	51673	hgsc.bcm.edu	hg19	16	67424967	67424967	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	TPPP3	NM_016140	exon3	c.G48A	p.K16K	GGCAAACTTGCGG	.	57.0	13.0	68.0	0.0	.	13	.	.	Atlas-SNP
GLG1	2734	hgsc.bcm.edu	hg19	16	74487222	74487222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GLG1	NM_001145667	exon26	c.C3383T	p.A1128V	CCATCTGCTGGGG	.	94.0	39.0	108.0	0.0	.	106	.	.	Atlas-SNP
YWHAE	7531	hgsc.bcm.edu	hg19	17	1264424	1264424	+	Missense_Mutation	SNP	G	G	T	rs148760302	alternate_allele	TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	YWHAE	NM_006761	exon4	c.C540A	p.F180L	GTAGTAGAATACG	.	49.0	35.0	104.0	0.0	.	50	.	G|1.000;A|0.000	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578525	7578525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	TP53_ENST00000545858,NS,adenocarcinoma,0,1	TP53	NM_000546	exon5	c.C405A	p.C135X	CAGTTGGCAAAAC	.	22.0	16.0	38.0	0.0	.	33396	.	.	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	hg19	17	34935776	34935776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GGNBP2	NM_024835	exon8	c.A947T	p.K316M	GGCAGAAGCTACG	.	197.0	39.0	114.0	0.0	.	72	.	.	Atlas-SNP
KRTAP4-2	85291	hgsc.bcm.edu	hg19	17	39334360	39334360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP4-2	NM_033062	exon1	c.C57G	p.N19K	GCAGCAGTTCTCT	.	144.0	38.0	112.0	0.0	.	93	.	.	Atlas-SNP
BECN1	8678	hgsc.bcm.edu	hg19	17	40962923	40962923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BECN1	NM_003766	exon12	c.T1208C	p.I403T	TCTTCAATCTTGC	.	47.0	32.0	43.0	0.0	.	23	.	.	Atlas-SNP
C17orf112	100506650	hgsc.bcm.edu	hg19	17	51063875	51063875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001243552	exon2	c.G119T	p.G40V	AGCTGGGAAACAT	.	250.0	60.0	189.0	0.0	.	.	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	7906552	7906552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PTPRM	NM_001105244	exon4	c.A518C	p.D173A	CTATCGATGAGGT	.	170.0	57.0	202.0	0.0	.	185	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65178248	65178248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	DSEL	NM_032160	exon2	c.A3628T	p.T1210S	TCAGAGTCCAGCA	.	104.0	36.0	140.0	0.0	.	196	.	.	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15367957	15367957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRD4	NM_058243	exon8	c.A1369T	p.M457L	CCGGCATCTTGGC	.	25.0	8.0	30.0	0.0	.	172	.	.	Atlas-SNP
LGALS4	3960	hgsc.bcm.edu	hg19	19	39297124	39297124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	LGALS4,colon,carcinoma,0,2	LGALS4	NM_006149	exon4	c.G451A	p.G151R	GGCCTCCGATGAA	.	76.0	8.0	88.0	0.0	.	39	.	.	Atlas-SNP
CEACAM5	1048	hgsc.bcm.edu	hg19	19	42224926	42224926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CEACAM5	NM_004363	exon8	c.C1856T	p.S619F	CGGCCTCTAACCC	.	161.0	71.0	189.0	0.0	.	84	.	.	Atlas-SNP
ZNF226	7769	hgsc.bcm.edu	hg19	19	44681511	44681511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	NM_001032372	exon6	c.A2096G	p.Y699C	AACCATATAAATG	.	89.0	44.0	114.0	0.0	.	.	.	.	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	hg19	20	8698371	8698371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	PLCB1	NM_015192	exon14	c.A1389T	p.K463N	AATTTTGGTGAAA	.	47.0	17.0	71.0	0.0	.	394	.	.	Atlas-SNP
RBM39	9584	hgsc.bcm.edu	hg19	20	34312495	34312495	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	RBM39	NM_184234	exon8	c.A684G	p.S228S	TACCTGTGATGCC	.	119.0	71.0	94.0	0.0	.	68	.	.	Atlas-SNP
GTSF1L	149699	hgsc.bcm.edu	hg19	20	42355239	42355239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	GTSF1L	NM_001008901	exon1	c.G96C	p.K32N	GGGGTTCTTTCTC	.	145.0	37.0	105.0	0.0	.	14	.	.	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	hg19	20	50048694	50048694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NFATC2	NM_012340	exon9	c.G2632A	p.G878R	GGGGTCCGTTTTT	.	155.0	11.0	169.0	0.0	.	112	.	.	Atlas-SNP
STX16	8675	hgsc.bcm.edu	hg19	20	57251326	57251326	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	STX16	NM_001001433	exon9	c.C957T	p.L319L	TGTCCTCGTTGGC	.	202.0	54.0	195.0	0.0	.	36	.	.	Atlas-SNP
HRH3	11255	hgsc.bcm.edu	hg19	20	60791849	60791849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	HRH3	NM_007232	exon3	c.C551G	p.P184R	CCCTCGGGGATGG	.	65.0	16.0	68.0	0.0	.	25	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40627715	40627715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	BRWD1	NM_018963	exon19	c.A2111G	p.N704S	CCAATATTTGGAG	.	30.0	7.0	85.0	0.0	.	325	.	.	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	hg19	21	46021639	46021639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	KRTAP10-7	NM_198689	exon2	c.C1103T	p.S368F	AGAAGTCCAGCTG	.	30.0	12.0	70.0	0.0	.	41	.	.	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	hg19	22	24564464	24564464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CABIN1	NM_001199281	exon33	c.A5732G	p.H1911R	AGGTCCATCTTGG	.	23.0	19.0	96.0	0.0	.	153	.	.	Atlas-SNP
AP1B1	162	hgsc.bcm.edu	hg19	22	29724846	29724846	+	Silent	SNP	G	G	A	rs147684584		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	AP1B1	NM_001127	exon23	c.C2814T	p.H938H	GTACACGTGCTGG	.	35.0	16.0	52.0	0.0	.	72	.	G|1.000;A|0.000	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46807621	46807621	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CELSR1	NM_014246	exon6	c.G4647A	p.P1549P	CCCGGACGGCCCA	.	39.0	13.0	57.0	0.0	.	242	.	.	Atlas-SNP
NUDT10	170685	hgsc.bcm.edu	hg19	X	51075989	51075989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NUDT10	NM_153183	exon2	c.C172A	p.P58T	GAGGAGCCGGGCG	.	48.0	37.0	51.0	0.0	.	28	.	.	Atlas-SNP
NXF3	56000	hgsc.bcm.edu	hg19	X	102332620	102332620	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NXF3	NM_022052	exon18	c.C1506G	p.T502T	ACTCTGGGTCCCT	.	38.0	30.0	62.0	0.0	.	81	.	.	Atlas-SNP
IRAK1	3654	hgsc.bcm.edu	hg19	X	153278076	153278076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IRAK1	NM_001569	exon13	c.A1984G	p.I662V	GGTTGATGATAAT	.	59.0	16.0	68.0	0.0	.	107	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11531	11531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	.	ENST00000361381	exon1	c.G772A	p.A258T	CACATAGCCTACC	.	15.0	12.0	111.0	0.0	.	.	.	.	Atlas-SNP
NPAT	4863	hgsc.bcm.edu	hg19	11	108064705	108064714	+	Frame_Shift_Del	DEL	ACTCATTTAA	ACTCATTTAA	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	ACTCATTTAA	ACTCATTTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	NPAT	NM_002519	exon3	c.188_197del	p.63_66del	.	.	199.0	55.0	272.0	0.0	.	124	.	.	Atlas-Indel,Pindel
OR5T2	219464	hgsc.bcm.edu	hg19	11	56000436	56000441	+	In_Frame_Del	DEL	AGAGGT	AGAGGT	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AGAGGT	AGAGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	OR5T2	NM_001004746	exon1	c.222_227del	p.74_76del	.	.	74.0	19.0	123.0	0.0	.	107	.	.	Atlas-Indel,Pindel
C6	729	hgsc.bcm.edu	hg19	5	41181559	41181560	+	Frame_Shift_Ins	INS	-	-	C	rs372345940		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.,1	C6	NM_000065	exon7	c.829_830insG	p.S277fs	.	.	213.0	22.0	180.0	0.0	.	197	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21251239	21251240	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	APOB	NM_000384	exon13	c.1789_1790insT	p.I597fs	.	.	120.0	49.0	157.0	0.0	.	761	.	.	Atlas-INDEL
IMMP1L	196294	hgsc.bcm.edu	hg19	11	31482231	31482232	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	IMMP1L	NM_144981	exon4	c.136_137insT	p.Q46fs	.	.	286.0	110.0	390.0	0.0	.	16	.	.	Atlas-INDEL
CD109	135228	hgsc.bcm.edu	hg19	6	74492373	74492373	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	CD109	NM_001159587	exon18	c.1999delG	p.E667fs	.	.	82.0	30.0	123.0	0.0	.	170	.	.	Atlas-Indel,Pindel
SENP6	26054	hgsc.bcm.edu	hg19	6	76376479	76376480	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.1046_1047insTT	p.E349fs	.	.	44.0	18.0	70.0	0.0	.	189	.	.	Atlas-INDEL
SENP6	26054	hgsc.bcm.edu	hg19	6	76376480	76376481	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-A3A7-01A-11D-A22F-10	TCGA-DD-A3A7-11A-11D-A22F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	29b92b51-7ba3-42a9-97d3-6a9b5e43f928	134e6bf3-534e-4a0e-94e0-37c93f47f72b	.	SENP6	NM_015571	exon10	c.1046_1047del	p.349_349del	.	.	44.0	14.0	71.0	0.0	.	189	.	.	Pindel
