Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRAMEF2	65122	hgsc.bcm.edu	hg19	1	12919960	12919960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PRAMEF2	NM_023014	exon3	c.C700T	p.L234F	AAGACTCTTTGCA	.	145.0	32.0	171.0	0.0	.	85	.	.	Atlas-SNP
FHAD1	114827	hgsc.bcm.edu	hg19	1	15684641	15684641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FHAD1	NM_052929	exon20	c.A2532T	p.L844F	CGTTTTAAATAAT	.	64.0	13.0	134.0	0.0	.	78	.	.	Atlas-SNP
CDA	978	hgsc.bcm.edu	hg19	1	20940334	20940334	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CDA	NM_001785	exon3	c.267-1G>A	.	TCCCCAGTGACAT	.	104.0	20.0	137.0	0.0	.	19	.	.	Atlas-SNP
HTR1D	3352	hgsc.bcm.edu	hg19	1	23519871	23519871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HTR1D	NM_000864	exon1	c.T842A	p.L281H	TCAGCAAGCTTGA	.	61.0	14.0	96.0	0.0	.	36	.	.	Atlas-SNP
C1orf63	57035	hgsc.bcm.edu	hg19	1	25570119	25570119	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf63	NM_020317	exon4	c.G678T	p.S226S	CTTTTCCGACAGC	.	108.0	5.0	175.0	0.0	.	17	.	.	Atlas-SNP
HMGB4	127540	hgsc.bcm.edu	hg19	1	34330001	34330001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	HMGB4,NS,malignant_melanoma,0,1	HMGB4	NM_145205	exon2	c.G209A	p.R70Q	AAGCCCGATACCA	.	89.0	18.0	119.0	0.0	.	27	.	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	hg19	1	34667800	34667800	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf94	NM_001134734	exon4	c.C1386T	p.L462L	CTGGCTCAACCTG	.	215.0	47.0	293.0	0.0	.	156	.	.	Atlas-SNP
GNL2	29889	hgsc.bcm.edu	hg19	1	38033329	38033329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GNL2	NM_013285	exon15	c.G1988A	p.R663K	TCTTCCCTTTGTG	.	115.0	24.0	142.0	0.0	.	58	.	.	Atlas-SNP
C1orf228	339541	hgsc.bcm.edu	hg19	1	45163762	45163762	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf228	NM_001145636	exon4	c.G303A	p.E101E	TCTTGAGGTTGGA	.	99.0	18.0	138.0	0.0	.	15	.	.	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	hg19	1	66102182	66102182	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LEPR	NM_002303	exon20	c.A2982G	p.K994K	CTCTAAACCAAGT	.	36.0	7.0	56.0	0.0	.	284	.	.	Atlas-SNP
MIER1	57708	hgsc.bcm.edu	hg19	1	67436586	67436586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MIER1	NM_001077700	exon9	c.G868A	p.D290N	ACAGGTGATGAGA	.	77.0	5.0	136.0	0.0	.	86	.	.	Atlas-SNP
ZNHIT6	54680	hgsc.bcm.edu	hg19	1	86123530	86123530	+	Missense_Mutation	SNP	C	C	A	rs139368369		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNHIT6	NM_017953	exon9	c.G1372T	p.V458L	ACTTACCTTGGTG	.	54.0	13.0	55.0	0.0	.	42	.	C|1.000;A|0.000	Atlas-SNP
RPAP2	79871	hgsc.bcm.edu	hg19	1	92789745	92789745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RPAP2	NM_024813	exon8	c.G1268A	p.W423X	CTGCCTGGAGGGA	.	80.0	21.0	110.0	0.0	.	48	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118558673	118558673	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPAG17	NM_206996	exon29	c.A4202C	p.N1401T	ATCCGATTTCCTT	.	218.0	49.0	320.0	0.0	.	263	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144931551	144931551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PDE4DIP	NM_001002811	exon1	c.A158G	p.K53R	GCACACTTGCTGC	.	267.0	13.0	240.0	0.0	.	817	.	.	Atlas-SNP
PRKAB2	5565	hgsc.bcm.edu	hg19	1	146634090	146634090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	PRKAB2,mouth,carcinoma,0,1	PRKAB2	NM_005399	exon6	c.A601G	p.R201G	TGAATCTTTCCTC	.	143.0	14.0	104.0	0.0	.	26	.	.	Atlas-SNP
VPS45	11311	hgsc.bcm.edu	hg19	1	150054035	150054035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VPS45	NM_007259	exon9	c.A892G	p.K298E	AAGAAGAAACCAA	.	205.0	14.0	129.0	0.0	.	47	.	.	Atlas-SNP
SETDB1	9869	hgsc.bcm.edu	hg19	1	150915464	150915464	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SETDB1	NM_012432	exon7	c.T810C	p.D270D	CAAAGATGGGAAT	.	384.0	37.0	210.0	0.0	.	204	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152286777	152286777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLG	NM_002016	exon3	c.C585T	p.D195D	CCTATTGTCTCCT	.	282.0	31.0	143.0	0.0	.	900	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152327323	152327323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLG2	NM_001014342	exon3	c.G2939C	p.G980A	CCTGAGCCTGACT	.	520.0	40.0	300.0	0.0	.	431	.	.	Atlas-SNP
LCE1B	353132	hgsc.bcm.edu	hg19	1	152785131	152785131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LCE1B	NM_178349	exon1	c.C209T	p.S70F	GCAGTTCTGGGGG	.	98.0	4.0	72.0	0.0	.	45	.	.	Atlas-SNP
NPR1	4881	hgsc.bcm.edu	hg19	1	153653162	153653162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	NPR1,caecum,carcinoma,0,1	NPR1	NM_000906	exon2	c.C907T	p.R303C	AGTGCCCGCCAGG	.	91.0	19.0	44.0	0.0	.	104	.	.	Atlas-SNP
CHRNB2	1141	hgsc.bcm.edu	hg19	1	154543704	154543704	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CHRNB2	NM_000748	exon5	c.C405T	p.A135A	CAATGCCGTGGTC	.	240.0	26.0	152.0	0.0	.	74	.	.	Atlas-SNP
KRTCAP2	200185	hgsc.bcm.edu	hg19	1	155145067	155145067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KRTCAP2	NM_173852	exon3	c.G275T	p.G92V	TGGAATCCTTTGC	.	282.0	16.0	157.0	0.0	.	15	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156639411	156639411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NES	NM_006617	exon4	c.G4569A	p.M1523I	ATCCTCCATCCCA	.	297.0	60.0	133.0	0.0	.	196	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156641300	156641300	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NES	NM_006617	exon4	c.T2680A	p.S894T	CCAGAGATCTCAA	.	204.0	17.0	129.0	0.0	.	196	.	.	Atlas-SNP
OR10T2	128360	hgsc.bcm.edu	hg19	1	158368322	158368322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR10T2	NM_001004475	exon1	c.A935C	p.K312T	CTCATCTTGGTTG	.	94.0	12.0	57.0	0.0	.	76	.	.	Atlas-SNP
IGSF9	57549	hgsc.bcm.edu	hg19	1	159901621	159901621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IGSF9	NM_001135050	exon11	c.C1343T	p.P448L	ACAACAGGAGGAG	.	113.0	9.0	50.0	0.0	.	123	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160141549	160141549	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ATP1A4	NM_144699	exon12	c.1854+2T>C	.	TTAAGGTAAATAC	.	96.0	12.0	42.0	0.0	.	167	.	.	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	172357765	172357765	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNM3	NM_015569	exon20	c.C2338G	p.L780V	GCTCCCCTCGCAA	.	126.0	11.0	67.0	0.0	.	85	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179659883	179659883	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TDRD5	NM_001199085	exon18	c.T2913C	p.A971A	CCGTGCTATTACA	.	148.0	12.0	70.0	0.0	.	149	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181706682	181706682	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CACNA1E	NM_001205293	exon23	c.C3444T	p.Y1148Y	CCACTACATCGTG	.	259.0	28.0	173.0	0.0	.	778	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182442708	182442708	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RGSL1	NM_001137669	exon6	c.464-2A>G	.	ATTTCCAGAGTCC	.	132.0	19.0	61.0	0.0	.	111	.	.	Atlas-SNP
RGS8	85397	hgsc.bcm.edu	hg19	1	182617399	182617399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RGS8	NM_033345	exon5	c.T287C	p.F96S	TCACTGAACTCCG	.	223.0	20.0	121.0	0.0	.	51	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186099815	186099815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HMCN1	NM_031935	exon85	c.A13216T	p.I4406F	CTGGCCATCTATG	.	93.0	11.0	51.0	0.0	.	797	.	.	Atlas-SNP
PDC	5132	hgsc.bcm.edu	hg19	1	186413279	186413279	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PDC	NM_002597	exon4	c.C573A	p.I191I	TTTATAGATGAGC	.	164.0	13.0	92.0	0.0	.	15	.	.	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	hg19	1	197403858	197403858	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CRB1	NM_201253	exon9	c.T2865A	p.N955K	TTTTAATGGACAA	.	181.0	15.0	122.0	0.0	.	284	.	.	Atlas-SNP
NAV1	89796	hgsc.bcm.edu	hg19	1	201757647	201757647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NAV1	NM_020443	exon10	c.C3047T	p.P1016L	GCATCCCCACCCA	.	250.0	14.0	146.0	0.0	.	143	.	.	Atlas-SNP
C1orf116	79098	hgsc.bcm.edu	hg19	1	207198319	207198319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf116	NM_023938	exon3	c.G196A	p.D66N	CGCTGTCAGCCTC	.	177.0	8.0	87.0	0.0	.	64	.	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	hg19	1	211093070	211093070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNH1	NM_172362	exon7	c.G1374T	p.M458I	GCTGGTCATTGTG	.	460.0	23.0	247.0	0.0	.	199	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216172333	216172333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	USH2A	NM_206933	exon34	c.C6553A	p.H2185N	AATCATGTGTATG	.	227.0	22.0	115.0	0.0	.	1168	.	.	Atlas-SNP
ESRRG	2104	hgsc.bcm.edu	hg19	1	216850694	216850694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ESRRG	NM_001243518	exon3	c.G211A	p.G71R	AGCTCCCACTGGC	.	658.0	57.0	387.0	0.0	.	111	.	.	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	hg19	1	220387288	220387288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAB3GAP2	NM_012414	exon3	c.A214G	p.T72A	AGGAAGTTTTTTG	.	282.0	32.0	147.0	0.0	.	120	.	.	Atlas-SNP
MIA3	375056	hgsc.bcm.edu	hg19	1	222822189	222822189	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MIA3	NM_198551	exon8	c.C3628T	p.Q1210X	GTATATCAAGGTA	.	68.0	11.0	52.0	0.0	.	167	.	.	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	hg19	1	223567373	223567373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C1orf65	NM_152610	exon1	c.T556A	p.S186T	TCCCCTTCCTCAG	.	475.0	50.0	244.0	0.0	.	71	.	.	Atlas-SNP
GNPAT	8443	hgsc.bcm.edu	hg19	1	231411879	231411879	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GNPAT	NM_014236	exon15	c.1938-2A>G	.	TCTCCTAGAAATA	.	345.0	33.0	201.0	0.0	.	73	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237713919	237713919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RYR2	NM_001035	exon27	c.G3142A	p.D1048N	AACAAGGACAGCC	.	358.0	50.0	180.0	0.0	.	1273	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237982484	237982484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RYR2	NM_001035	exon101	c.T14582C	p.I4861T	TGGCCATAATACA	.	206.0	12.0	122.0	0.0	.	1273	.	.	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	hg19	1	240966242	240966242	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RGS7	NM_002924	exon16	c.T1321A	p.S441T	CACTGGATCTTAT	.	136.0	10.0	76.0	0.0	.	308	.	.	Atlas-SNP
OR2L2	26246	hgsc.bcm.edu	hg19	1	248202311	248202311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2L2	NM_001004686	exon1	c.T742C	p.S248P	GTAGTGTCCTTCT	.	471.0	44.0	230.0	0.0	.	115	.	.	Atlas-SNP
OR2T1	26696	hgsc.bcm.edu	hg19	1	248569623	248569623	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2T1	NM_030904	exon1	c.T328A	p.Y110N	CCCATGTACTTCC	.	337.0	34.0	180.0	0.0	.	89	.	.	Atlas-SNP
OR2G6	391211	hgsc.bcm.edu	hg19	1	248685435	248685435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2G6	NM_001013355	exon1	c.C488A	p.T163N	CCCTCACTGTGCA	.	448.0	36.0	234.0	0.0	.	124	.	.	Atlas-SNP
OR2T34	127068	hgsc.bcm.edu	hg19	1	248737675	248737675	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR2T34	NM_001001821	exon1	c.T384G	p.Y128X	AGCAGCATATCGG	.	1219.0	94.0	651.0	0.0	.	72	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15307372	15307372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NBAS	NM_015909	exon52	c.A6916T	p.T2306S	AGGGAGTGGAGAC	.	213.0	23.0	180.0	0.0	.	246	.	.	Atlas-SNP
KCNS3	3790	hgsc.bcm.edu	hg19	2	18112349	18112349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNS3	NM_002252	exon3	c.A74G	p.K25R	GCTTTAAGCAGTC	.	365.0	128.0	273.0	0.0	.	85	.	.	Atlas-SNP
KLHL29	114818	hgsc.bcm.edu	hg19	2	23918908	23918908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KLHL29	NM_052920	exon10	c.C1829T	p.P610L	GGAACCCGCAGAA	.	118.0	34.0	135.0	0.0	.	47	.	.	Atlas-SNP
GALNT14	79623	hgsc.bcm.edu	hg19	2	31178813	31178813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GALNT14	NM_001253826	exon6	c.C512T	p.P171L	ACCTTGGGCAACT	.	215.0	59.0	160.0	0.0	.	103	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48915238	48915238	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	LHCGR,NS,carcinoma,0,1	LHCGR	NM_000233	exon11	c.G1698A	p.K566K	AGCAATCTTTGTA	.	169.0	19.0	151.0	0.0	.	154	.	.	Atlas-SNP
EFEMP1	2202	hgsc.bcm.edu	hg19	2	56108782	56108782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	EFEMP1,caecum,carcinoma,0,1	EFEMP1	NM_001039349	exon5	c.C605T	p.P202L	CCAGGAGGGCACT	.	220.0	47.0	181.0	0.0	.	81	.	.	Atlas-SNP
CCDC142	84865	hgsc.bcm.edu	hg19	2	74707914	74707914	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC142	NM_032779	exon5	c.G1464A	p.K488K	AGTCAGCTTCTGG	.	251.0	24.0	205.0	0.0	.	40	.	.	Atlas-SNP
TACR1	6869	hgsc.bcm.edu	hg19	2	75278382	75278382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	TACR1,NS,carcinoma,0,1	TACR1	NM_001058	exon4	c.G928A	p.D310N	ACCTGTCATTGAG	.	383.0	106.0	361.0	1.0	.	62	.	.	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	hg19	2	100194857	100194857	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AFF3	NM_001025108	exon17	c.G2925A	p.T975T	CGGCTTCGTCTGC	.	204.0	66.0	135.0	0.0	.	164	.	.	Atlas-SNP
IL1RL1	9173	hgsc.bcm.edu	hg19	2	102968228	102968228	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IL1RL1	NM_016232	exon11	c.A1518G	p.V506V	GAAAGTACAGGGG	.	213.0	37.0	176.0	0.0	.	114	.	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103090418	103090418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC9A4	NM_001011552	exon1	c.T200C	p.V67A	ACTATGTGCAAAT	.	164.0	48.0	141.0	0.0	.	115	.	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103124608	103124608	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC9A4	NM_001011552	exon5	c.C1269A	p.I423I	GTGCATCATTTTC	.	414.0	60.0	358.0	0.0	.	115	.	.	Atlas-SNP
SLC9A2	6549	hgsc.bcm.edu	hg19	2	103300730	103300730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC9A2	NM_003048	exon5	c.T1360C	p.F454L	GCTGTGTTTCCTC	.	427.0	102.0	347.0	0.0	.	112	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	hg19	2	108489237	108489237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	RGPD4,NS,carcinoma,0,1	RGPD4	NM_182588	exon20	c.T4777A	p.S1593T	AGTGGATCTGAAA	.	173.0	26.0	152.0	0.0	.	112	.	.	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	hg19	2	163361023	163361023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNH7	NM_033272	exon6	c.C1058A	p.S353Y	TCTGAAGAAGGAG	.	228.0	47.0	178.0	0.0	.	378	.	.	Atlas-SNP
COBLL1	22837	hgsc.bcm.edu	hg19	2	165548775	165548775	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COBLL1	NM_014900	exon13	c.C3370T	p.L1124L	CAGTCAGCAAACT	.	169.0	56.0	150.0	0.0	.	122	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179569674	179569674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TTN	NM_001267550	exon104	c.G29624T	p.R9875M	TCTGACCTCTCTA	.	258.0	34.0	183.0	0.0	.	18412	.	.	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	hg19	2	189901361	189901361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL5A2	NM_000393	exon52	c.A4094T	p.D1365V	TTCATATCAAGAC	.	100.0	20.0	73.0	0.0	.	230	.	.	Atlas-SNP
STAT4	6775	hgsc.bcm.edu	hg19	2	191898231	191898231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	STAT4	NM_001243835	exon20	c.G1837A	p.D613N	AATGGTCCACCCA	.	128.0	36.0	92.0	0.0	.	85	.	.	Atlas-SNP
CCDC150	284992	hgsc.bcm.edu	hg19	2	197521532	197521532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC150	NM_001080539	exon3	c.A352T	p.I118F	ATGAACATCTTTC	.	98.0	26.0	62.0	0.0	.	96	.	.	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	hg19	2	203332240	203332240	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BMPR2	NM_001204	exon3	c.248-2A>G	.	ATTTATAGGATGT	.	115.0	47.0	85.0	0.0	.	142	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210786230	210786230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	UNC80	NM_032504	exon33	c.T5152G	p.F1718V	AAATCCTTTTCAG	.	146.0	17.0	110.0	0.0	.	280	.	.	Atlas-SNP
IKZF2	22807	hgsc.bcm.edu	hg19	2	213872617	213872617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IKZF2	NM_016260	exon8	c.G1048C	p.V350L	TTATAACTGGGGC	.	193.0	41.0	155.0	0.0	.	71	.	.	Atlas-SNP
RUFY4	285180	hgsc.bcm.edu	hg19	2	218947924	218947924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RUFY4	NM_198483	exon11	c.G1447A	p.G483R	GAGCTTGGAGGGC	.	264.0	69.0	202.0	0.0	.	59	.	.	Atlas-SNP
TUBA4A	7277	hgsc.bcm.edu	hg19	2	220116022	220116022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TUBA4A	NM_006000	exon4	c.G399C	p.Q133H	GAAGCCCTGAAGT	.	111.0	10.0	84.0	0.0	.	96	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233710580	233710580	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GIGYF2	NM_001103147	exon28	c.G3507A	p.T1169T	TAATACGGCAAAT	.	171.0	26.0	94.0	0.0	.	288	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238274558	238274558	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL6A3	NM_004369	exon12	c.G5621C	p.R1874T	CTGACCCTGTGCA	.	61.0	17.0	46.0	0.0	.	608	.	.	Atlas-SNP
SCLY	51540	hgsc.bcm.edu	hg19	2	238990418	238990418	+	Missense_Mutation	SNP	C	C	A	rs140009501	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SCLY	NM_016510	exon5	c.C577A	p.R193S	GCAGTCCGCCCGA	.	139.0	30.0	101.0	0.0	.	51	.	C|1.000;T|0.000	Atlas-SNP
GRM7	2917	hgsc.bcm.edu	hg19	3	7620822	7620822	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRM7	NM_000844	exon8	c.C2229T	p.A743A	GCAAGCCAGAGGG	.	192.0	44.0	225.0	0.0	.	223	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	hg19	3	9776289	9776289	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BRPF1	NM_001003694	exon2	c.G465A	p.E155E	CAAGGAGAAGCGC	.	215.0	37.0	245.0	0.0	.	104	.	.	Atlas-SNP
LRRC3B	116135	hgsc.bcm.edu	hg19	3	26751290	26751290	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LRRC3B	NM_052953	exon2	c.T127G	p.S43A	TCTTCCTCTGGGG	.	150.0	36.0	177.0	0.0	.	51	.	.	Atlas-SNP
DUSP7	1849	hgsc.bcm.edu	hg19	3	52084943	52084943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	DUSP7,NS,carcinoma,0,1	DUSP7	NM_001947	exon3	c.G1148A	p.R383Q	AGCGTCCGCTCAA	.	234.0	47.0	304.0	0.0	.	34	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52441334	52441334	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.,1	BAP1	NM_004656	exon8	c.438-2A>T	.	CGGGCCTGGGGAA	.	98.0	60.0	106.0	0.0	.	371	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62522190	62522190	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CADPS	NM_003716	exon12	c.A2033T	p.H678L	GAAGCGTGGTCAA	.	135.0	62.0	211.0	0.0	.	387	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62522191	62522191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CADPS	NM_003716	exon12	c.C2032A	p.H678N	AAGCGTGGTCAAA	.	135.0	62.0	210.0	0.0	.	387	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64640083	64640083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADAMTS9	NM_182920	exon8	c.G1262A	p.S421N	TCTTCACTAATAG	.	176.0	31.0	192.0	0.0	.	206	.	.	Atlas-SNP
HTR1F	3355	hgsc.bcm.edu	hg19	3	88040703	88040703	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HTR1F	NM_000866	exon2	c.C804T	p.L268L	AAGTCTCAGGTCT	.	50.0	8.0	59.0	0.0	.	66	.	.	Atlas-SNP
STX19	415117	hgsc.bcm.edu	hg19	3	93733261	93733261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	STX19	NM_001001850	exon2	c.T853G	p.C285G	ACCAACAACACAG	.	62.0	4.0	46.0	0.0	.	19	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108178291	108178291	+	Missense_Mutation	SNP	G	G	T	rs372985354	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MYH15	NM_014981	exon19	c.C1998A	p.N666K	ATTCAGGTTTTCC	.	71.0	6.0	61.0	0.0	.	223	.	.	Atlas-SNP
MORC1	27136	hgsc.bcm.edu	hg19	3	108833252	108833252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MORC1	NM_014429	exon2	c.C98T	p.A33V	AATTCAGCCAGTG	.	93.0	12.0	109.0	0.0	.	211	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113720448	113720448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KIAA1407	NM_020817	exon13	c.G2157T	p.K719N	CATTTTCTTCAGT	.	330.0	45.0	323.0	0.0	.	80	.	.	Atlas-SNP
C3orf30	152405	hgsc.bcm.edu	hg19	3	118867060	118867060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C3orf30	NM_152539	exon2	c.T1432C	p.Y478H	AAGGGTTATCATA	.	134.0	18.0	98.0	0.0	.	64	.	.	Atlas-SNP
DNAJB8	165721	hgsc.bcm.edu	hg19	3	128181553	128181553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNAJB8	NM_153330	exon3	c.T536G	p.F179C	GACTTGAACCCCG	.	171.0	22.0	136.0	0.0	.	34	.	.	Atlas-SNP
CEP70	80321	hgsc.bcm.edu	hg19	3	138256157	138256157	+	Silent	SNP	C	C	A	rs372060625	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	CEP70,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CEP70	NM_024491	exon7	c.G498T	p.T166T	TTGCTCCGTTCGT	.	92.0	8.0	97.0	0.0	.	51	.	.	Atlas-SNP
GRK7	131890	hgsc.bcm.edu	hg19	3	141497352	141497352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRK7	NM_139209	exon1	c.A226T	p.T76S	CTAGCCACAGTGC	.	82.0	11.0	97.0	0.0	.	65	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151161336	151161336	+	Missense_Mutation	SNP	G	G	T	rs367812916	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IGSF10	NM_178822	exon5	c.C5399A	p.T1800K	TCAACCGTCACCA	.	348.0	58.0	357.0	0.0	.	279	.	.	Atlas-SNP
SLC33A1	9197	hgsc.bcm.edu	hg19	3	155571758	155571758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC33A1	NM_004733	exon1	c.G29A	p.S10N	CGGCTGCTGTCCT	.	177.0	79.0	188.0	0.0	.	57	.	.	Atlas-SNP
FNDC3B	64778	hgsc.bcm.edu	hg19	3	172048416	172048416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FNDC3B	NM_001135095	exon13	c.A1465T	p.T489S	GGCATCACATGGG	.	218.0	38.0	197.0	0.0	.	118	.	.	Atlas-SNP
GNB4	59345	hgsc.bcm.edu	hg19	3	179119095	179119095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GNB4	NM_021629	exon10	c.G929C	p.G310A	TCATGACCAGCAA	.	228.0	31.0	241.0	0.0	.	37	.	.	Atlas-SNP
MCCC1	56922	hgsc.bcm.edu	hg19	3	182788806	182788806	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MCCC1	NM_020166	exon7	c.A742T	p.K248X	CAAACTTCTCGAT	.	181.0	26.0	150.0	0.0	.	87	.	.	Atlas-SNP
ZNF518B	85460	hgsc.bcm.edu	hg19	4	10445461	10445461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF518B	NM_053042	exon3	c.G2492A	p.G831E	ATTGGCCCCCTTT	.	136.0	27.0	127.0	0.0	.	116	.	.	Atlas-SNP
FAM114A1	92689	hgsc.bcm.edu	hg19	4	38910313	38910313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM114A1	NM_138389	exon7	c.A758G	p.K253R	GGACCAAGACGCT	.	147.0	22.0	141.0	0.0	.	42	.	.	Atlas-SNP
GABRA4	2557	hgsc.bcm.edu	hg19	4	46967002	46967002	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRA4	NM_000809	exon8	c.T1119A	p.P373P	GGCTTCAGGATGC	.	115.0	12.0	128.0	0.0	.	129	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48607809	48607809	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FRYL	NM_015030	exon11	c.A783T	p.I261I	ATGTTTTATATCT	.	142.0	32.0	149.0	0.0	.	242	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62800605	62800605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LPHN3	NM_015236	exon11	c.T1956A	p.N652K	TTTGAATGCATGG	.	238.0	65.0	210.0	0.0	.	800	.	.	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86852134	86852134	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ARHGAP24	NM_031305	exon1	c.A51T	p.S17S	AGCCTCAACTCCT	.	96.0	21.0	159.0	0.0	.	116	.	.	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	hg19	4	110442311	110442311	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEC24B	NM_006323	exon13	c.C2284T	p.L762L	GTGAATCTATATG	.	62.0	13.0	112.0	0.0	.	186	.	.	Atlas-SNP
USP53	54532	hgsc.bcm.edu	hg19	4	120192951	120192951	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	USP53	NM_019050	exon15	c.A1936T	p.M646L	GATGAAATGAAGC	.	101.0	16.0	132.0	0.0	.	69	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158257592	158257592	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRIA2	NM_000826	exon11	c.T1537A	p.S513T	GACTTCTCAAAGC	.	144.0	45.0	164.0	0.0	.	358	.	.	Atlas-SNP
NAF1	92345	hgsc.bcm.edu	hg19	4	164061471	164061471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NAF1	NM_138386	exon5	c.A782G	p.H261R	TCAATGTGATCTG	.	55.0	10.0	52.0	0.0	.	69	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	166976353	166976353	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TLL1	NM_012464	exon13	c.T1650C	p.N550N	CTCCAATACTTTG	.	69.0	14.0	112.0	0.0	.	194	.	.	Atlas-SNP
ASB5	140458	hgsc.bcm.edu	hg19	4	177190077	177190077	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ASB5	NM_080874	exon1	c.A183G	p.V61V	TTGGGTTACTCCA	.	91.0	14.0	120.0	0.0	.	88	.	.	Atlas-SNP
CCDC110	256309	hgsc.bcm.edu	hg19	4	186366663	186366663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC110	NM_152775	exon7	c.A2495T	p.H832L	TAATGATGCTTGA	.	31.0	7.0	33.0	0.0	.	78	.	.	Atlas-SNP
MTNR1A	4543	hgsc.bcm.edu	hg19	4	187455096	187455096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MTNR1A	NM_005958	exon2	c.G800A	p.S267N	ACCATGCTGGCGG	.	129.0	32.0	113.0	0.0	.	46	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7743819	7743819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADCY2	NM_020546	exon15	c.T1910C	p.L637P	CGTTTCTCTTGCT	.	250.0	47.0	260.0	0.0	.	337	.	.	Atlas-SNP
ANKRA2	57763	hgsc.bcm.edu	hg19	5	72857022	72857022	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ANKRA2	NM_023039	exon3	c.A381G	p.K127K	TGACTGTTTTATG	.	241.0	25.0	216.0	0.0	.	23	.	.	Atlas-SNP
AP3B1	8546	hgsc.bcm.edu	hg19	5	77409598	77409598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AP3B1	NM_003664	exon19	c.A2227G	p.N743D	TTGAGTTCCTCTT	.	66.0	16.0	84.0	0.0	.	94	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94114816	94114816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MCTP1	NM_024717	exon19	c.A2609T	p.K870M	ATTACCTTGTCAT	.	234.0	36.0	186.0	0.0	.	110	.	.	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	hg19	5	94749823	94749823	+	Missense_Mutation	SNP	G	G	T	rs202064996	by1000genomes;alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	FAM81B,NS,carcinoma,0,1	FAM81B	NM_152548	exon4	c.G466T	p.A156S	TCGCTCGCCAGGA	.	189.0	36.0	158.0	0.0	.	51	.	G|1.000;A|0.000	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98212136	98212136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CHD1	NM_001270	exon23	c.A3364G	p.N1122D	TAATATTCTCCCG	.	107.0	28.0	96.0	0.0	.	137	.	.	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	hg19	5	115811300	115811300	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEMA6A	NM_020796	exon17	c.1650-1G>C	.	GTCAGTCTTTTAA	.	80.0	8.0	70.0	0.0	.	93	.	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	123983011	123983011	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF608	NM_020747	exon4	c.T3066C	p.S1022S	GCTCCCACTATTT	.	170.0	31.0	161.0	0.0	.	117	.	.	Atlas-SNP
PHF15	23338	hgsc.bcm.edu	hg19	5	133914456	133914456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PHF15	NM_015288	exon11	c.C1822T	p.P608S	CCACCACCACCAC	.	74.0	19.0	92.0	0.0	.	60	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134121190	134121190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DDX46	NM_014829	exon11	c.C1378G	p.Q460E	GCTTTACAGATTA	.	134.0	11.0	88.0	0.0	.	77	.	.	Atlas-SNP
WNT8A	7478	hgsc.bcm.edu	hg19	5	137426301	137426301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	WNT8A	NM_058244	exon6	c.G595C	p.A199P	CAGCTGGCTGAAT	.	144.0	17.0	124.0	0.0	.	36	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139219614	139219614	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PSD2	NM_032289	exon14	c.G1971A	p.E657E	GCAGGAGGAGCAA	.	159.0	18.0	173.0	0.0	.	88	.	.	Atlas-SNP
NRG2	9542	hgsc.bcm.edu	hg19	5	139239488	139239488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NRG2	NM_013982	exon6	c.G1199A	p.G400E	TCAAATCCAAGGT	.	244.0	32.0	213.0	0.0	.	69	.	.	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	hg19	5	140711003	140711003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDHGA1	NM_018912	exon1	c.T752C	p.V251A	TAAATGTCCCCGA	.	62.0	14.0	65.0	0.0	.	397	.	.	Atlas-SNP
PCDH1	5097	hgsc.bcm.edu	hg19	5	141248811	141248811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDH1	NM_032420	exon2	c.A226T	p.S76C	CGAGGCTCCCAAT	.	102.0	6.0	121.0	0.0	.	119	.	.	Atlas-SNP
KCTD16	57528	hgsc.bcm.edu	hg19	5	143853260	143853260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCTD16	NM_020768	exon4	c.C870G	p.C290W	CGATTGCTGCTGC	.	356.0	54.0	323.0	0.0	.	70	.	.	Atlas-SNP
SPINK6	404203	hgsc.bcm.edu	hg19	5	147593570	147593570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPINK6	NM_205841	exon3	c.C179T	p.A60V	AATGTGCCTTCTG	.	73.0	12.0	66.0	0.0	.	8	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150945319	150945319	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAT2	NM_001447	exon1	c.C3174T	p.D1058D	GTCATCGTCCTGG	.	136.0	20.0	155.0	0.0	.	465	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151775082	151775082	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NMUR2	NM_020167	exon3	c.G875C	p.S292T	ACAAAGCTGAAGA	.	322.0	57.0	296.0	0.0	.	111	.	.	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	hg19	5	158250310	158250310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EBF1	NM_024007	exon8	c.A652G	p.T218A	TGACTGTCGTAGA	.	135.0	20.0	93.0	0.0	.	110	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161116665	161116665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRA6	NM_000811	exon6	c.A553G	p.I185V	GAAATCATATATA	.	78.0	12.0	72.0	0.0	.	139	.	.	Atlas-SNP
ZFP2	80108	hgsc.bcm.edu	hg19	5	178359572	178359572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZFP2	NM_030613	exon5	c.A1258G	p.I420V	GCCTTCATTAAGA	.	52.0	7.0	50.0	0.0	.	70	.	.	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	hg19	6	1612242	1612242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FOXC1	NM_001453	exon1	c.C1562T	p.S521F	ACAACTCTCCAGT	.	238.0	21.0	137.0	0.0	.	19	.	.	Atlas-SNP
NRSN1	140767	hgsc.bcm.edu	hg19	6	24146149	24146149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NRSN1	NM_080723	exon4	c.A563G	p.N188S	TTCAAAATGTCCA	.	119.0	14.0	78.0	0.0	.	31	.	.	Atlas-SNP
POM121L2	94026	hgsc.bcm.edu	hg19	6	27279209	27279209	+	Silent	SNP	G	G	A	rs375438522	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	POM121L2	NM_033482	exon1	c.C741T	p.G247G	GAGGGTGCCACCT	.	100.0	7.0	74.0	0.0	.	61	.	.	Atlas-SNP
NEU1	4758	hgsc.bcm.edu	hg19	6	31827993	31827993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NEU1	NM_000434	exon5	c.A847G	p.N283D	AGTTGTTCTGGTT	.	312.0	39.0	219.0	0.0	.	21	.	.	Atlas-SNP
C2	717	hgsc.bcm.edu	hg19	6	31911759	31911759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C2	NM_000063	exon14	c.G1799A	p.C600Y	GCACCTGTAGGGA	.	135.0	19.0	110.0	0.0	.	50	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32188291	32188291	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NOTCH4	NM_004557	exon6	c.A1050T	p.T350T	ACAGCTTGTGCCG	.	125.0	15.0	60.0	0.0	.	201	.	.	Atlas-SNP
KCTD20	222658	hgsc.bcm.edu	hg19	6	36449534	36449534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCTD20	NM_173562	exon6	c.A854G	p.Q285R	ATTCCCAAAGTAG	.	170.0	23.0	101.0	0.0	.	37	.	.	Atlas-SNP
CPNE5	57699	hgsc.bcm.edu	hg19	6	36730726	36730726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CPNE5	NM_020939	exon12	c.G823A	p.A275T	CACGGGCCAGCTC	.	166.0	46.0	123.0	0.0	.	56	.	.	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	hg19	6	37606362	37606362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MDGA1	NM_153487	exon15	c.A2618G	p.N873S	CACACATTGCCCT	.	109.0	9.0	73.0	0.0	.	104	.	.	Atlas-SNP
TREML4	285852	hgsc.bcm.edu	hg19	6	41196565	41196565	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TREML4	NM_198153	exon2	c.T177C	p.S59S	GACATCTCCAAGT	.	125.0	17.0	80.0	0.0	.	25	.	.	Atlas-SNP
RSPH9	221421	hgsc.bcm.edu	hg19	6	43623341	43623341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RSPH9	NM_152732	exon3	c.C436G	p.Q146E	ATTGACCAGATTG	.	114.0	9.0	69.0	0.0	.	60	.	.	Atlas-SNP
GPR116	221395	hgsc.bcm.edu	hg19	6	46823751	46823751	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPR116	NM_015234	exon20	c.T3921C	p.S1307S	TATTGGAGAACTC	.	547.0	75.0	380.0	0.0	.	133	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51609291	51609291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKHD1	NM_170724	exon60	c.A10048G	p.R3350G	ATTTTCTTGGACT	.	176.0	25.0	132.0	0.0	.	927	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51917941	51917941	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKHD1	NM_170724	exon21	c.C2073T	p.L691L	CAGAGGGAGAAGG	.	142.0	13.0	86.0	0.0	.	927	.	.	Atlas-SNP
LGSN	51557	hgsc.bcm.edu	hg19	6	63990576	63990576	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LGSN	NM_016571	exon4	c.A880T	p.R294W	ATTTCCTTGCCAC	.	145.0	17.0	104.0	0.0	.	82	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75884975	75884975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL12A1	NM_004370	exon13	c.T2489C	p.M830T	AATTTCATAGTAG	.	172.0	31.0	166.0	0.0	.	385	.	.	Atlas-SNP
CASP8AP2	9994	hgsc.bcm.edu	hg19	6	90581017	90581017	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CASP8AP2	NM_001137667	exon9	c.C5802T	p.D1934D	TGATGACCGGGAA	.	121.0	23.0	161.0	0.0	.	108	.	.	Atlas-SNP
POU3F2	5454	hgsc.bcm.edu	hg19	6	99283906	99283906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	POU3F2	NM_005604	exon1	c.C1157A	p.S386Y	TCACCTCCCTCGC	.	129.0	48.0	78.0	0.0	.	33	.	.	Atlas-SNP
POU3F2	5454	hgsc.bcm.edu	hg19	6	99283907	99283907	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	POU3F2	NM_005604	exon1	c.C1158A	p.S386S	CACCTCCCTCGCG	.	126.0	46.0	78.0	0.0	.	33	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	100960788	100960788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ASCC3	NM_006828	exon40	c.A6082T	p.N2028Y	AGAAATTCCATGC	.	118.0	17.0	74.0	0.0	.	205	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106987360	106987360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AIM1	NM_001624	exon7	c.G3577A	p.D1193N	TTCTGGGATACAG	.	176.0	22.0	133.0	0.0	.	161	.	.	Atlas-SNP
OSTM1	28962	hgsc.bcm.edu	hg19	6	108372335	108372335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OSTM1	NM_014028	exon4	c.A683T	p.Y228F	GTTTTGTATGCTT	.	228.0	31.0	172.0	0.0	.	22	.	.	Atlas-SNP
RFX6	222546	hgsc.bcm.edu	hg19	6	117248312	117248312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RFX6	NM_173560	exon17	c.C2008T	p.P670S	GTGGGCCCAGTAC	.	195.0	15.0	146.0	0.0	.	141	.	.	Atlas-SNP
RNF146	81847	hgsc.bcm.edu	hg19	6	127607830	127607830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RNF146	NM_001242850	exon3	c.C72T	p.S24S	CGAGTCCTGTTCT	.	326.0	34.0	207.0	0.0	.	31	.	.	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138655566	138655566	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KIAA1244	NM_020340	exon33	c.C5583T	p.D1861D	TGAAGACATCTTT	.	106.0	11.0	79.0	0.0	.	236	.	.	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	hg19	6	146755591	146755591	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GRM1	NM_000838	exon9	c.C3244T	p.L1082L	CTGCAGCTGAGCA	.	44.0	5.0	41.0	0.0	.	419	.	.	Atlas-SNP
SASH1	23328	hgsc.bcm.edu	hg19	6	148841002	148841002	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SASH1	NM_015278	exon10	c.G1182A	p.K394K	GATGAAGAAGGGT	.	22.0	7.0	19.0	0.0	.	123	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152740828	152740828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYNE1	NM_033071	exon40	c.A5318G	p.E1773G	TGGTGTTCAGCAA	.	165.0	15.0	140.0	0.0	.	3227	.	.	Atlas-SNP
PLG	5340	hgsc.bcm.edu	hg19	6	161137785	161137785	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLG	NM_000301	exon7	c.C777T	p.I259I	TGACATCCCCCGC	.	112.0	6.0	76.0	0.0	.	150	.	.	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	hg19	6	165715083	165715083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	C6orf118,NS,carcinoma,0,1	C6orf118	NM_144980	exon2	c.C728T	p.A243V	TGGCCCGCGGCCG	.	122.0	14.0	109.0	0.0	.	116	.	.	Atlas-SNP
GPR31	2853	hgsc.bcm.edu	hg19	6	167570796	167570796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPR31	NM_005299	exon1	c.T524A	p.I175N	CAGATGATGCTGA	.	95.0	6.0	80.0	0.0	.	44	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47933628	47933628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKD1L1	NM_138295	exon15	c.G2300A	p.S767N	TAGTTGCTGTACA	.	66.0	6.0	86.0	0.0	.	328	.	.	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92905597	92905597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	CCDC132_ENST00000305866,NS,carcinoma,-1,2	CCDC132	NM_024553	exon12	c.C922A	p.Q308K	AAGCTGCAATATA	.	122.0	27.0	113.0	0.0	.	136	.	.	Atlas-SNP
DYNC1I1	1780	hgsc.bcm.edu	hg19	7	95614244	95614244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DYNC1I1	NM_004411	exon8	c.A749G	p.D250G	ATTCCGACATCTT	.	70.0	12.0	73.0	0.0	.	111	.	.	Atlas-SNP
IFRD1	3475	hgsc.bcm.edu	hg19	7	112102235	112102235	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IFRD1	NM_001197080	exon7	c.647+1G>A	.	TGAGATGTATGTA	.	71.0	8.0	67.0	0.0	.	46	.	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	hg19	7	150698351	150698351	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NOS3	NM_001160111	exon10	c.C1266T	p.A422A	CCACGCCGCCACG	.	96.0	18.0	88.0	0.0	.	131	.	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150773389	150773389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLC4A2	NM_003040	exon23	c.G3661A	p.A1221T	AACGAGGCAGAGC	.	116.0	21.0	97.0	0.0	.	98	.	.	Atlas-SNP
CYP11B2	1585	hgsc.bcm.edu	hg19	8	143994784	143994784	+	Silent	SNP	G	G	A	rs200388238		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CYP11B2	NM_000498	exon6	c.C1038T	p.A346A	TGCGGCGGCCAGG	.	92.0	15.0	147.0	0.0	.	107	.	G|0.999;A|0.001	Atlas-SNP
DMRT3	58524	hgsc.bcm.edu	hg19	9	990928	990928	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DMRT3	NM_021240	exon2	c.C1342T	p.Q448X	TCAAAGCAGTCCA	.	139.0	19.0	165.0	0.0	.	83	.	.	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	hg19	9	14824891	14824891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FREM1	NM_144966	exon12	c.A1981T	p.I661L	TAGTTATATAGGC	.	81.0	21.0	111.0	0.0	.	261	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27173269	27173269	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TEK	NM_000459	exon6	c.A810G	p.G270G	CAGTGGACAAGAG	.	234.0	44.0	245.0	0.0	.	250	.	.	Atlas-SNP
SMC5	23137	hgsc.bcm.edu	hg19	9	72895730	72895730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SMC5	NM_015110	exon6	c.G734T	p.R245I	ATGAAAGATATAA	.	35.0	5.0	31.0	0.0	.	96	.	.	Atlas-SNP
SPATA31C1	441452	hgsc.bcm.edu	hg19	9	90535712	90535712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001145124	exon4	c.A890T	p.E297V	CGCAGGAGACTAC	.	260.0	55.0	251.0	0.0	.	.	.	.	Atlas-SNP
FAM22F	54754	hgsc.bcm.edu	hg19	9	97082514	97082514	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM22F	NM_017561	exon5	c.T1344C	p.C448C	CTGGGAACACAGC	.	118.0	24.0	150.0	0.0	.	72	.	.	Atlas-SNP
OR13C3	138803	hgsc.bcm.edu	hg19	9	107298487	107298487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR13C3	NM_001001961	exon1	c.T608C	p.I203T	TTGATAATATTAT	.	98.0	19.0	90.0	0.0	.	45	.	.	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	hg19	9	113509954	113509954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUSK	NM_001166280	exon8	c.G817A	p.D273N	GTGAAAGACCGAG	.	126.0	32.0	116.0	0.0	.	112	.	.	Atlas-SNP
PTGR1	22949	hgsc.bcm.edu	hg19	9	114348379	114348379	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PTGR1	NM_001146108	exon5	c.A276T	p.T92T	GTGCGTTGTCCAG	.	219.0	41.0	264.0	0.0	.	23	.	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	116973290	116973290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COL27A1	NM_032888	exon12	c.G2351A	p.G784D	AGAGGGGCAAGAT	.	96.0	14.0	141.0	0.0	.	200	.	.	Atlas-SNP
FBXW2	26190	hgsc.bcm.edu	hg19	9	123526906	123526906	+	Silent	SNP	C	C	T	rs377576429		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FBXW2	NM_012164	exon8	c.G1296A	p.T432T	CAAGCCCGTGTCA	.	201.0	39.0	202.0	0.0	.	34	.	.	Atlas-SNP
NR6A1	2649	hgsc.bcm.edu	hg19	9	127284984	127284984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NR6A1	NM_033334	exon10	c.A1443G	p.X481W	AACAGGTCATTCC	.	33.0	4.0	42.0	0.0	.	38	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132632035	132632035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	USP20	NM_001008563	exon14	c.T1477C	p.Y493H	GCCATCTACCAGA	.	176.0	8.0	260.0	0.0	.	186	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134038560	134038560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NUP214	NM_005085	exon19	c.G2723A	p.S908N	TTCACAGGTGTGG	.	95.0	17.0	103.0	0.0	.	166	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139361447	139361447	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEC16A	NM_014866	exon6	c.T3891C	p.Y1297Y	TGCGTCATACTCT	.	62.0	14.0	48.0	0.0	.	249	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	16967302	16967302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CUBN	NM_001081	exon43	c.T6584A	p.F2195Y	GAAATAAACTGAA	.	298.0	48.0	260.0	0.0	.	515	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25887663	25887663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	GPR158,NS,carcinoma,0,1	GPR158	NM_020752	exon11	c.G3108T	p.M1036I	TGAAATGGAGAAA	.	110.0	31.0	88.0	0.0	.	255	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37507997	37507997	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ANKRD30A	NM_052997	exon34	c.C3189T	p.A1063A	AATAGCCACACTG	.	203.0	65.0	174.0	0.0	.	448	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55600110	55600110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDH15	NM_001142763	exon30	c.A3968G	p.N1323S	GCTCTGTTGGTTT	.	186.0	30.0	142.0	0.0	.	1715	.	.	Atlas-SNP
CCSER2	54462	hgsc.bcm.edu	hg19	10	86131874	86131874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCSER2	NM_018999	exon2	c.G1066C	p.A356P	GTTTTGGCTAAGG	.	142.0	23.0	104.0	0.0	.	7	.	.	Atlas-SNP
OPN4	94233	hgsc.bcm.edu	hg19	10	88419162	88419162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OPN4	NM_001030015	exon6	c.T770C	p.L257P	TCTTCCTCCCTCT	.	148.0	26.0	101.0	0.0	.	61	.	.	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	hg19	10	88649933	88649933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BMPR1A	NM_004329	exon4	c.G182A	p.C61Y	TAAAGTGCTATTG	.	275.0	34.0	243.0	0.0	.	118	.	.	Atlas-SNP
IFIT2	3433	hgsc.bcm.edu	hg19	10	91066441	91066441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IFIT2	NM_001547	exon2	c.C728T	p.A243V	AGAAAGCCCCAGG	.	137.0	12.0	129.0	0.0	.	39	.	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	hg19	10	95791760	95791760	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLCE1	NM_016341	exon2	c.G957A	p.K319K	CAAAAAGGAGCGA	.	134.0	13.0	110.0	0.0	.	543	.	.	Atlas-SNP
SLK	9748	hgsc.bcm.edu	hg19	10	105763103	105763103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SLK	NM_014720	exon9	c.A2167G	p.K723E	GAAAATAAAGAAG	.	40.0	12.0	40.0	0.0	.	107	.	.	Atlas-SNP
WDR96	80217	hgsc.bcm.edu	hg19	10	105952057	105952057	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	WDR96	NM_025145	exon12	c.T1446C	p.Y482Y	CTGATCATAACTA	.	75.0	19.0	69.0	0.0	.	183	.	.	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	hg19	10	127434413	127434413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C10orf137	NM_001202438	exon19	c.A2728G	p.M910V	AGGCTCATGCGGA	.	166.0	50.0	128.0	0.0	.	153	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135038187	135038187	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KNDC1	NM_152643	exon30	c.G5043A	p.Q1681Q	GAGCCAGGTGCAC	.	307.0	37.0	207.0	0.0	.	155	.	.	Atlas-SNP
ECHS1	1892	hgsc.bcm.edu	hg19	10	135179489	135179489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ECHS1	NM_004092	exon6	c.G730C	p.V244L	CATTCACTGATTC	.	100.0	18.0	101.0	0.0	.	31	.	.	Atlas-SNP
ODF3	113746	hgsc.bcm.edu	hg19	11	198506	198506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ODF3	NM_053280	exon5	c.C455A	p.T152N	CCAATACCGTCGG	.	159.0	23.0	171.0	0.0	.	27	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	611702	611702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PHRF1	NM_020901	exon18	c.C4872A	p.D1624E	CGTGGACAAGTAC	.	81.0	9.0	66.0	0.0	.	188	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1081136	1081136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUC2	NM_002457	exon11	c.G1432A	p.V478M	CCCCACGTGACCG	.	143.0	27.0	96.0	0.0	.	614	.	.	Atlas-SNP
KRTAP5-3	387266	hgsc.bcm.edu	hg19	11	1629511	1629511	+	Silent	SNP	G	G	A	rs371318576		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KRTAP5-3	NM_001012708	exon1	c.C105T	p.C35C	TACACAGCAGCCG	.	42.0	10.0	49.0	0.0	.	33	.	.	Atlas-SNP
TNNT3	7140	hgsc.bcm.edu	hg19	11	1955022	1955022	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TNNT3	NM_006757	exon10	c.C243A	p.A81A	TGAAGCCCGGAAG	.	218.0	26.0	178.0	0.0	.	68	.	.	Atlas-SNP
TNNT3	7140	hgsc.bcm.edu	hg19	11	1955023	1955023	+	Silent	SNP	C	C	A	rs193178655	bycluster;by1000genomes;alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TNNT3	NM_006757	exon10	c.C244A	p.R82R	GAAGCCCGGAAGA	.	219.0	25.0	177.0	0.0	.	68	.	C|1.000;T|0.000	Atlas-SNP
INS-IGF2	723961	hgsc.bcm.edu	hg19	11	2170519	2170519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	INS-IGF2	NM_001042376	exon3	c.A244T	p.T82S	TGGCTGTGGCGTC	.	62.0	11.0	60.0	0.0	.	8	.	.	Atlas-SNP
TSSC4	10078	hgsc.bcm.edu	hg19	11	2424378	2424378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TSSC4	NM_005706	exon2	c.A515C	p.E172A	TGACCGAGGTCAG	.	90.0	9.0	99.0	0.0	.	19	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6579426	6579426	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNHD1	NM_144666	exon25	c.T8901C	p.P2967P	TTTCCCTGGCCAG	.	137.0	69.0	147.0	0.0	.	198	.	.	Atlas-SNP
OR10A5	144124	hgsc.bcm.edu	hg19	11	6867579	6867579	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR10A5	NM_178168	exon1	c.T666C	p.I222I	TCGCATTGCTGCT	.	452.0	54.0	445.0	0.0	.	48	.	.	Atlas-SNP
SYT9	143425	hgsc.bcm.edu	hg19	11	7334640	7334640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYT9	NM_175733	exon3	c.G512A	p.R171Q	CAATCCGAAGACA	.	126.0	25.0	95.0	0.0	.	91	.	.	Atlas-SNP
COMMD9	29099	hgsc.bcm.edu	hg19	11	36296268	36296268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	COMMD9	NM_014186	exon6	c.G511A	p.V171M	GCTCCACGGTGAC	.	345.0	173.0	248.0	0.0	.	21	.	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	hg19	11	36596385	36596385	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAG1	NM_000448	exon2	c.A1531T	p.K511X	GCTGAGAAGGTAC	.	205.0	41.0	152.0	0.0	.	151	.	.	Atlas-SNP
RAG2	5897	hgsc.bcm.edu	hg19	11	36614459	36614459	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAG2	NM_001243785	exon3	c.C1260A	p.C420X	AGTAGGGCAGCAT	.	104.0	14.0	113.0	0.0	.	92	.	.	Atlas-SNP
TP53I11	9537	hgsc.bcm.edu	hg19	11	44958391	44958391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TP53I11	NM_001258324	exon5	c.C297A	p.S99R	GGTCTTGCTGGTC	.	97.0	4.0	80.0	0.0	.	17	.	.	Atlas-SNP
MADD	8567	hgsc.bcm.edu	hg19	11	47315515	47315515	+	Missense_Mutation	SNP	G	G	A	rs375878509		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MADD	NM_130475	exon22	c.G3497A	p.S1166N	GTGTGAGCCTGAC	.	132.0	32.0	128.0	0.0	.	172	.	.	Atlas-SNP
SPI1	6688	hgsc.bcm.edu	hg19	11	47376978	47376978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPI1	NM_001080547	exon5	c.C616G	p.H206D	CCTTGTGCTTGGA	.	109.0	19.0	117.0	0.0	.	21	.	.	Atlas-SNP
OR4A5	81318	hgsc.bcm.edu	hg19	11	51412084	51412084	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	OR4A5,NS,carcinoma,0,1	OR4A5	NM_001005272	exon1	c.C312T	p.F104F	ACCAAAGAAATGG	.	250.0	36.0	276.0	0.0	.	116	.	.	Atlas-SNP
OR5D18	219438	hgsc.bcm.edu	hg19	11	55587463	55587463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	OR5D18,right_upper_lobe,carcinoma,0,1	OR5D18	NM_001001952	exon1	c.G358A	p.A120T	GTGATGGCCTATG	.	338.0	70.0	288.0	1.0	.	121	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62290481	62290481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AHNAK	NM_001620	exon5	c.A11408G	p.K3803R	GGCATCTTCAGGT	.	209.0	41.0	140.0	0.0	.	532	.	.	Atlas-SNP
MAP3K11	4296	hgsc.bcm.edu	hg19	11	65365896	65365896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAP3K11	NM_002419	exon10	c.A2410G	p.T804A	ACAAGGTCCAGGG	.	42.0	5.0	36.0	0.0	.	67	.	.	Atlas-SNP
RBM14	10432	hgsc.bcm.edu	hg19	11	66392861	66392861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	RBM14,colon,carcinoma,0,1	RBM14	NM_006328	exon2	c.G1514A	p.G505E	CCTACGGGGCCCA	.	69.0	11.0	59.0	0.0	.	59	.	.	Atlas-SNP
TMEM135	65084	hgsc.bcm.edu	hg19	11	86782616	86782616	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TMEM135	NM_022918	exon3	c.G321A	p.L107L	CGCTCTGCCAGCA	.	62.0	7.0	73.0	0.0	.	40	.	.	Atlas-SNP
NAALAD2	10003	hgsc.bcm.edu	hg19	11	89896533	89896533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	NAALAD2,NS,carcinoma,0,1	NAALAD2	NM_005467	exon10	c.C1131G	p.D377E	TATTGACCCAACC	.	74.0	10.0	67.0	1.0	.	113	.	.	Atlas-SNP
MMP1	4312	hgsc.bcm.edu	hg19	11	102662135	102662135	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MMP1	NM_002421	exon8	c.G1125A	p.K375K	GATATGCTTCACA	.	149.0	23.0	135.0	0.0	.	74	.	.	Atlas-SNP
ALG9	79796	hgsc.bcm.edu	hg19	11	111740961	111740961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ALG9	NM_001077690	exon3	c.G264A	p.W88X	TGGCTCCCAGTAG	.	113.0	20.0	97.0	0.0	.	77	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118374789	118374789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MLL	NM_001197104	exon27	c.G8182A	p.E2728K	GGGACAGAGAGTG	.	127.0	26.0	109.0	0.0	.	548	.	.	Atlas-SNP
BLID	414899	hgsc.bcm.edu	hg19	11	121986461	121986461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BLID	NM_001001786	exon1	c.C170A	p.P57H	AACATAGGTTCTT	.	183.0	29.0	162.0	0.0	.	20	.	.	Atlas-SNP
OPCML	4978	hgsc.bcm.edu	hg19	11	132306092	132306092	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OPCML	NM_002545	exon6	c.A825G	p.K275K	GCGGCCTTTGTTT	.	146.0	21.0	125.0	0.0	.	166	.	.	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9258835	9258835	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	A2M	NM_000014	exon10	c.G1101A	p.G367G	CACCTGCCCAAAG	.	107.0	12.0	82.0	0.0	.	180	.	.	Atlas-SNP
TMEM52B	120939	hgsc.bcm.edu	hg19	12	10339065	10339065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_153022	exon3	c.T124C	p.S42P	CTGACGTCCCTGT	.	152.0	24.0	125.0	0.0	.	.	.	.	Atlas-SNP
PLBD1	79887	hgsc.bcm.edu	hg19	12	14706133	14706133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PLBD1	NM_024829	exon2	c.C329G	p.T110S	GGGGCAGTGAGGT	.	137.0	13.0	100.0	0.0	.	36	.	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18552717	18552717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PIK3C2G	NM_004570	exon15	c.C2128T	p.H710Y	GAAATGCATACCA	.	84.0	4.0	100.0	0.0	.	315	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32260378	32260378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	BICD1	NM_001714	exon1	c.G113A	p.G38E	AGTACGGGCTGGT	.	125.0	11.0	139.0	0.0	.	89	.	.	Atlas-SNP
TUBA1A	7846	hgsc.bcm.edu	hg19	12	49578875	49578875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TUBA1A	NM_001270399	exon4	c.T1274C	p.M425T	GCAGCCATGTCCT	.	336.0	90.0	348.0	0.0	.	32	.	.	Atlas-SNP
HELB	92797	hgsc.bcm.edu	hg19	12	66704296	66704296	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HELB	NM_033647	exon4	c.A1588T	p.K530X	GCGGACAAGGCTA	.	144.0	18.0	101.0	0.0	.	90	.	.	Atlas-SNP
TRHDE	29953	hgsc.bcm.edu	hg19	12	72936136	72936136	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TRHDE	NM_013381	exon7	c.A1653G	p.Q551Q	TTTGCAAGTAAGT	.	35.0	9.0	26.0	0.0	.	194	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	81014030	81014030	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PTPRQ	NM_001145026	exon29	c.A4971G	p.T1657T	ATGTACAGAAGGA	.	189.0	53.0	175.0	0.0	.	119	.	.	Atlas-SNP
NR2C1	7181	hgsc.bcm.edu	hg19	12	95422248	95422248	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NR2C1	NM_003297	exon12	c.A1446G	p.L482L	CTCCTGTAGTTTG	.	64.0	6.0	63.0	0.0	.	56	.	.	Atlas-SNP
CMKLR1	1240	hgsc.bcm.edu	hg19	12	108686719	108686719	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CMKLR1	NM_001142344	exon3	c.T21A	p.D7E	GTTGTAATCTTCA	.	119.0	6.0	136.0	0.0	.	67	.	.	Atlas-SNP
TRPV4	59341	hgsc.bcm.edu	hg19	12	110230527	110230527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TRPV4	NM_021625	exon11	c.G1754T	p.G585V	ATCCAGCCCAGGA	.	155.0	17.0	123.0	0.0	.	88	.	.	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	hg19	12	114296692	114296692	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RBM19	NM_001146699	exon22	c.G2568A	p.G856G	CAACTCCCCAAAG	.	88.0	31.0	99.0	0.0	.	117	.	.	Atlas-SNP
HIP1R	9026	hgsc.bcm.edu	hg19	12	123338690	123338690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HIP1R	NM_003959	exon8	c.C678T	p.L226L	CCACCTCTACCAC	.	61.0	5.0	88.0	0.0	.	68	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129559407	129559407	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TMEM132D	NM_133448	exon9	c.G2313C	p.M771I	AATAACCATTTCC	.	269.0	14.0	251.0	0.0	.	299	.	.	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25743926	25743926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_152704	exon1	c.G1832C	p.S611T	TTGATGCTAATAG	.	257.0	59.0	366.0	0.0	.	.	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	28942739	28942739	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLT1	NM_001160030	exon15	c.A2178G	p.S726S	TGACGATGATGAT	.	99.0	10.0	54.0	0.0	.	393	.	.	Atlas-SNP
KLF12	11278	hgsc.bcm.edu	hg19	13	74387348	74387348	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KLF12	NM_007249	exon5	c.C747A	p.T249T	ATCTAAGGTCACA	.	170.0	38.0	222.0	0.0	.	42	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109792700	109792700	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MYO16	NM_001198950	exon32	c.G4140A	p.K1380K	CACCAAGCTCAGC	.	6.0	4.0	8.0	0.0	.	285	.	.	Atlas-SNP
ACTR10	55860	hgsc.bcm.edu	hg19	14	58690343	58690343	+	Missense_Mutation	SNP	G	G	A	rs372667907		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ACTR10	NM_018477	exon9	c.G638A	p.R213H	AAGCGCGTACTTG	.	65.0	20.0	65.0	0.0	.	33	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60074189	60074189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RTN1	NM_021136	exon4	c.G1787A	p.R596Q	ATGTCCCGCCAAT	.	134.0	23.0	190.0	0.0	.	139	.	.	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	hg19	14	73721644	73721644	+	Silent	SNP	G	G	A	rs369082075		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	PAPLN_ENST00000427855,NS,carcinoma,0,2	PAPLN	NM_173462	exon13	c.G1464A	p.P488P	TGGGCCGCCCAGC	.	37.0	14.0	35.0	1.0	.	180	.	.	Atlas-SNP
SEL1L	6400	hgsc.bcm.edu	hg19	14	81955626	81955626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEL1L	NM_005065	exon14	c.G1365T	p.M455I	GTAGGCCATTCCA	.	182.0	25.0	160.0	0.0	.	67	.	.	Atlas-SNP
EML5	161436	hgsc.bcm.edu	hg19	14	89202777	89202777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EML5	NM_183387	exon7	c.A980T	p.E327V	CAAAGTTCACCTT	.	185.0	38.0	185.0	0.0	.	141	.	.	Atlas-SNP
KCNK13	56659	hgsc.bcm.edu	hg19	14	90651207	90651207	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNK13	NM_022054	exon2	c.C1087T	p.L363L	GCCATCCTGCAGA	.	163.0	26.0	169.0	0.0	.	76	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101350875	101350875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RTL1	NM_001134888	exon1	c.C251T	p.P84L	TTACGTGGGCCAC	.	103.0	16.0	119.0	0.0	.	120	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414859	105414859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	AHNAK2	NM_138420	exon7	c.A6929G	p.D2310G	GTCACGTCCTTGT	.	122.0	28.0	159.0	0.0	.	719	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24921553	24921553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	C15orf2,NS,carcinoma,0,1	.	NM_018958	exon1	c.T539C	p.L180P	CCCCCCTTAGCAG	.	97.0	15.0	85.0	0.0	.	.	.	.	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	hg19	15	26793135	26793135	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GABRB3	NM_021912	exon9	c.A1227G	p.R409R	CCCTTCTCGAGGC	.	174.0	37.0	167.0	0.0	.	338	.	.	Atlas-SNP
CHRM5	1133	hgsc.bcm.edu	hg19	15	34356472	34356472	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CHRM5	NM_012125	exon3	c.A1554G	p.K518K	GAAAAAAGTGGAA	.	103.0	11.0	99.0	0.0	.	59	.	.	Atlas-SNP
CASC5	57082	hgsc.bcm.edu	hg19	15	40920293	40920293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CASC5	NM_170589	exon12	c.A5480G	p.D1827G	AAGAGGATATAGA	.	89.0	17.0	113.0	0.0	.	269	.	.	Atlas-SNP
SPINT1	6692	hgsc.bcm.edu	hg19	15	41137074	41137074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPINT1	NM_181642	exon2	c.C322T	p.R108C	CCCGACCGCGGGG	.	70.0	9.0	80.0	0.0	.	28	.	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41337196	41337196	+	Missense_Mutation	SNP	T	T	A	rs115089447	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	INO80	NM_017553	exon24	c.A2813T	p.E938V	TGGCTCTCCCCTT	.	66.0	14.0	63.0	0.0	.	122	.	T|0.989;C|0.011	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48719788	48719788	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FBN1	NM_000138	exon58	c.C7180T	p.R2394X	ATCCTCGGCCATG	.	137.0	12.0	124.0	0.0	.	310	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56394441	56394441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RFX7	NM_022841	exon6	c.A529G	p.S177G	GTCCACTGTAGCA	.	47.0	10.0	54.0	0.0	.	170	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62219327	62219327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VPS13C	NM_020821	exon52	c.C6479T	p.P2160L	AGAAAAGGGCAAG	.	117.0	17.0	142.0	0.0	.	506	.	.	Atlas-SNP
HEXA	3073	hgsc.bcm.edu	hg19	15	72643535	72643535	+	Missense_Mutation	SNP	T	T	A	rs121907976	alternate_allele	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HEXA	NM_000520	exon6	c.A611T	p.H204L	ACCAGATGCCAGT	.	174.0	24.0	116.0	0.0	.	48	.	.	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	91043276	91043276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IQGAP1	NM_003870	exon38	c.A4910C	p.D1637A	TATTTGATAGAGC	.	69.0	5.0	76.0	0.0	.	140	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99451929	99451929	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	IGF1R,colon,carcinoma,0,1	IGF1R	NM_000875	exon6	c.C1263T	p.Y421Y	CTTCTACGTCCTC	.	190.0	15.0	195.0	0.0	.	147	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101592136	101592136	+	Silent	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LRRK1	NM_024652	exon24	c.T3660A	p.P1220P	GGTCCCTGAACTG	.	108.0	10.0	134.0	0.0	.	310	.	.	Atlas-SNP
NUP93	9688	hgsc.bcm.edu	hg19	16	56872968	56872968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NUP93	NM_014669	exon19	c.A2123T	p.D708V	ATATTGATAGAGC	.	223.0	54.0	201.0	0.0	.	75	.	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76513378	76513378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CNTNAP4	NM_138994	exon11	c.A1606G	p.I536V	TACTATATAGATT	.	171.0	26.0	195.0	0.0	.	600	.	.	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	hg19	16	77398168	77398168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADAMTS18	NM_199355	exon5	c.A889G	p.T297A	CGAGGGTTTCCAC	.	218.0	51.0	222.0	0.0	.	270	.	.	Atlas-SNP
VAT1L	57687	hgsc.bcm.edu	hg19	16	77859180	77859180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	VAT1L	NM_020927	exon3	c.C401T	p.A134V	ACAATGCCTGGGC	.	250.0	43.0	292.0	0.0	.	68	.	.	Atlas-SNP
ZC3H18	124245	hgsc.bcm.edu	hg19	16	88643755	88643755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZC3H18	NM_144604	exon2	c.A224C	p.E75A	CAAGTGAGCCTAA	.	52.0	9.0	83.0	0.0	.	90	.	.	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	hg19	17	4576104	4576104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PELP1	NM_014389	exon16	c.G2182A	p.E728K	GGTTCTCAGGGCC	.	64.0	26.0	78.0	0.0	.	102	.	.	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	hg19	17	4576404	4576404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PELP1	NM_014389	exon16	c.G1882A	p.A628T	GAGCAGCACAGGT	.	74.0	25.0	83.0	0.0	.	102	.	.	Atlas-SNP
GP1BA	2811	hgsc.bcm.edu	hg19	17	4837033	4837033	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GP1BA	NM_000173	exon2	c.C1134A	p.S378S	AAAATCCACTACT	.	130.0	59.0	105.0	0.0	.	53	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7720031	7720031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	DNAH2,NS,carcinoma,0,1	DNAH2	NM_020877	exon63	c.C9872T	p.A3291V	AGAAGGCCAGATG	.	88.0	27.0	134.0	1.0	.	498	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	hg19	17	12666558	12666558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MYOCD	NM_001146312	exon14	c.A2558G	p.E853G	GTGATGAGCATCT	.	194.0	124.0	155.0	0.0	.	291	.	.	Atlas-SNP
ADORA2B	136	hgsc.bcm.edu	hg19	17	15878262	15878262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ADORA2B	NM_000676	exon2	c.A605G	p.Y202C	TGATCTACATTAA	.	165.0	102.0	189.0	1.0	.	23	.	.	Atlas-SNP
SMCR7	125170	hgsc.bcm.edu	hg19	17	18167688	18167688	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SMCR7	NM_148886	exon4	c.G1008A	p.L336L	GGGGCTGGCGGGG	.	14.0	12.0	8.0	0.0	.	20	.	.	Atlas-SNP
ARL5C	390790	hgsc.bcm.edu	hg19	17	37321340	37321340	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ARL5C	NM_001143968	exon2	c.C99T	p.L33L	CCGGTAGAGAATG	.	153.0	16.0	156.0	0.0	.	3	.	.	Atlas-SNP
CCR7	1236	hgsc.bcm.edu	hg19	17	38711491	38711491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCR7	NM_001838	exon3	c.A640G	p.T214A	GCTCTGTGATGAG	.	205.0	28.0	135.0	0.0	.	31	.	.	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38938637	38938637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KRT27	NM_181537	exon1	c.G109A	p.G37S	GCACACCGCATGT	.	145.0	13.0	117.0	0.0	.	41	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61573828	61573828	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ACE	NM_000789	exon23	c.C3454T	p.L1152L	GGCCCCCTGCACA	.	335.0	202.0	339.0	1.0	.	187	.	.	Atlas-SNP
KCNJ2	3759	hgsc.bcm.edu	hg19	17	68171825	68171825	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KCNJ2	NM_000891	exon2	c.C645T	p.G215G	AGTGGGCAATCTT	.	144.0	22.0	102.0	0.0	.	74	.	.	Atlas-SNP
DNAI2	64446	hgsc.bcm.edu	hg19	17	72285791	72285791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DNAI2	NM_001172810	exon5	c.A526G	p.R176G	GGCAACAGGAAGT	.	125.0	83.0	98.0	0.0	.	102	.	.	Atlas-SNP
ST6GALNAC2	10610	hgsc.bcm.edu	hg19	17	74569415	74569415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ST6GALNAC2	NM_006456	exon4	c.G392A	p.G131D	TCTGAGCCGTTCA	.	46.0	9.0	52.0	0.0	.	29	.	.	Atlas-SNP
MFSD11	79157	hgsc.bcm.edu	hg19	17	74774280	74774280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MFSD11	NM_001242532	exon13	c.C1196A	p.A399E	TTTGCGCAGCCGT	.	285.0	31.0	203.0	0.0	.	47	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9254383	9254383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ANKRD12	NM_015208	exon9	c.A1118G	p.K373R	TTAATAAGATGAT	.	95.0	10.0	105.0	0.0	.	167	.	.	Atlas-SNP
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29511372	29511372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	TRAPPC8,NS,carcinoma,0,1	TRAPPC8	NM_014939	exon2	c.A272T	p.D91V	ACAACATCATTCA	.	129.0	18.0	165.0	0.0	.	126	.	.	Atlas-SNP
TCEB3B	51224	hgsc.bcm.edu	hg19	18	44560523	44560523	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TCEB3B	NM_016427	exon1	c.T1113A	p.D371E	AGCCATATCTACC	.	58.0	10.0	98.0	0.0	.	141	.	.	Atlas-SNP
FEM1A	55527	hgsc.bcm.edu	hg19	19	4793795	4793795	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	FEM1A,colon,carcinoma,0,1	FEM1A	NM_018708	exon1	c.G1929A	p.A643A	CCTTGCGGCCCGG	.	67.0	11.0	42.0	0.0	.	41	.	.	Atlas-SNP
CATSPERD	257062	hgsc.bcm.edu	hg19	19	5766134	5766134	+	Silent	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_152784	exon17	c.C1527G	p.G509G	AGTTGGCTGCGAC	.	157.0	22.0	124.0	0.0	.	.	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9056445	9056445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MUC16	NM_024690	exon3	c.C31001T	p.S10334F	GTTGAAGAGGAGA	.	262.0	31.0	200.0	0.0	.	4315	.	.	Atlas-SNP
ZNF426	79088	hgsc.bcm.edu	hg19	19	9641667	9641667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	ZNF426,NS,carcinoma,0,1	ZNF426	NM_024106	exon7	c.A402G	p.I134M	CAATTGTATCCCA	.	91.0	9.0	87.0	0.0	.	56	.	.	Atlas-SNP
ZNF441	126068	hgsc.bcm.edu	hg19	19	11888524	11888524	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF441	NM_152355	exon2	c.G102A	p.Q34Q	GATGCAGGAAACC	.	191.0	19.0	180.0	0.0	.	123	.	.	Atlas-SNP
ZNF439	90594	hgsc.bcm.edu	hg19	19	11978948	11978948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF439	NM_152262	exon3	c.A1064G	p.E355G	CTTATGAATGTAA	.	94.0	11.0	76.0	0.0	.	67	.	.	Atlas-SNP
OR7C2	26658	hgsc.bcm.edu	hg19	19	15052324	15052324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	OR7C2	NM_012377	exon1	c.A24T	p.E8D	AACAGAAGTTGGA	.	131.0	14.0	89.0	0.0	.	50	.	.	Atlas-SNP
ELL	8178	hgsc.bcm.edu	hg19	19	18576653	18576653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ELL	NM_006532	exon3	c.G259A	p.D87N	GGTTGTCGCGGCC	.	57.0	7.0	75.0	0.0	.	52	.	.	Atlas-SNP
ZNF714	148206	hgsc.bcm.edu	hg19	19	21299624	21299624	+	Missense_Mutation	SNP	T	T	C	rs371085101		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF714	NM_182515	exon5	c.T154C	p.S52P	TGTTCTTCTTTTA	.	76.0	42.0	79.0	0.0	.	121	.	.	Atlas-SNP
CEP89	84902	hgsc.bcm.edu	hg19	19	33439208	33439208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CEP89	NM_032816	exon5	c.G559A	p.G187S	GGGAGCCTGGAAA	.	59.0	9.0	38.0	0.0	.	82	.	.	Atlas-SNP
ZFP30	22835	hgsc.bcm.edu	hg19	19	38127120	38127120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	ZFP30,colon,carcinoma,+1,1	ZFP30	NM_014898	exon6	c.A322G	p.R108G	TAATTCTTTCCAT	.	142.0	38.0	121.0	1.0	.	68	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38382236	38382236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	WDR87	NM_031951	exon5	c.C3233T	p.P1078L	TTGCTGGGCTTGA	.	201.0	30.0	158.0	0.0	.	191	.	.	Atlas-SNP
TIMM50	92609	hgsc.bcm.edu	hg19	19	39980382	39980382	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TIMM50	NM_001001563	exon11	c.G1293A	p.E431E	GGCCGAGCTCTCC	.	162.0	20.0	93.0	0.0	.	37	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42859978	42859978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	MEGF8_ENST00000334370,caecum,carcinoma,0,3	MEGF8	NM_001271938	exon24	c.G4213A	p.A1405T	GGCTCTGCCCGCT	.	57.0	9.0	76.0	0.0	.	358	.	.	Atlas-SNP
ZNF222	7673	hgsc.bcm.edu	hg19	19	44536345	44536345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF222	NM_001129996	exon4	c.A638G	p.Y213C	AATGCTATAAGTG	.	267.0	30.0	200.0	0.0	.	90	.	.	Atlas-SNP
CLASRP	11129	hgsc.bcm.edu	hg19	19	45543521	45543521	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CLASRP	NM_007056	exon2	c.C51T	p.V17V	GATGGTCGACTAC	.	243.0	24.0	183.0	0.0	.	44	.	.	Atlas-SNP
SYNGR4	23546	hgsc.bcm.edu	hg19	19	48879425	48879425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYNGR4	NM_012451	exon5	c.G555A	p.M185I	TGGCATGGTGCTG	.	188.0	28.0	148.0	0.0	.	31	.	.	Atlas-SNP
SIGLEC11	114132	hgsc.bcm.edu	hg19	19	50464033	50464033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SIGLEC11	NM_052884	exon2	c.G236A	p.S79N	TTTGGGCTGGTCC	.	221.0	27.0	176.0	0.0	.	70	.	.	Atlas-SNP
KLK9	284366	hgsc.bcm.edu	hg19	19	51506441	51506441	+	Silent	SNP	T	T	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	KLK9	NM_012315	exon5	c.A679C	p.R227R	GGGGTCTGGAGCA	.	79.0	9.0	65.0	0.0	.	27	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53014631	53014631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_001099694	exon6	c.C997T	p.H333Y	ACATGCCATCATA	.	218.0	37.0	163.0	0.0	.	.	.	.	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	hg19	19	55453072	55453072	+	Missense_Mutation	SNP	G	G	A	rs142163492		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NLRP7	NM_001127255	exon2	c.C8T	p.S3L	TGGGGCGATGTCA	.	93.0	9.0	75.0	0.0	.	411	.	G|1.000;A|0.000	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	hg19	19	55871144	55871144	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM71E2	NM_001145402	exon9	c.C1092T	p.P364P	GGGATAGGGAGCC	.	159.0	16.0	141.0	0.0	.	41	.	.	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	hg19	19	56369470	56369470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NLRP4	NM_134444	exon3	c.G711T	p.Q237H	GCTGCAGGGCGGC	.	189.0	33.0	127.0	0.0	.	331	.	.	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	hg19	19	58578913	58578913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF135	NM_007134	exon4	c.A1133T	p.Y378F	AACCCTATCAGTG	.	188.0	26.0	138.0	0.0	.	159	.	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	hg19	20	17616198	17616198	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RRBP1	NM_004587	exon7	c.G1150T	p.E384X	TGCTCTCCACCTG	.	69.0	21.0	65.0	0.0	.	157	.	.	Atlas-SNP
THBD	7056	hgsc.bcm.edu	hg19	20	23028767	23028767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	THBD	NM_000361	exon1	c.C1375T	p.P459S	TACCGGGGAGGTT	.	129.0	20.0	129.0	0.0	.	26	.	.	Atlas-SNP
C20orf24	55969	hgsc.bcm.edu	hg19	20	35238002	35238002	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	C20orf24	NM_001199534	exon3	c.219-2A>T	.	TGCTCCAGATTCT	.	229.0	26.0	180.0	0.0	.	17	.	.	Atlas-SNP
ZHX3	23051	hgsc.bcm.edu	hg19	20	39833219	39833219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZHX3	NM_015035	exon3	c.G338A	p.G113E	CTGCACCCACTGC	.	96.0	20.0	84.0	0.0	.	78	.	.	Atlas-SNP
PABPC1L	80336	hgsc.bcm.edu	hg19	20	43566743	43566743	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PABPC1L	NM_001124756	exon13	c.C1687G	p.L563V	ACCCAGCTGGCTG	.	195.0	38.0	140.0	0.0	.	59	.	.	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49212742	49212742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FAM65C	NM_080829	exon15	c.G1837A	p.A613T	CACCGGCTGTGAG	.	147.0	19.0	115.0	0.0	.	87	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58489028	58489028	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SYCP2	NM_014258	exon12	c.830+2T>C	.	AAGTTTACCTTCT	.	133.0	22.0	83.0	0.0	.	204	.	.	Atlas-SNP
TCFL5	10732	hgsc.bcm.edu	hg19	20	61488865	61488865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TCFL5	NM_006602	exon4	c.G1120A	p.G374S	AAGCGCCTTGTGT	.	172.0	19.0	116.0	0.0	.	43	.	.	Atlas-SNP
LIPI	149998	hgsc.bcm.edu	hg19	21	15579225	15579225	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	LIPI	NM_198996	exon1	c.A20G	p.H7R	TTATTATGTAAAC	.	58.0	14.0	48.0	0.0	.	95	.	.	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	hg19	21	32638540	32638540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TIAM1	NM_003253	exon5	c.G749T	p.G250V	TTGCTCCCCGGCC	.	73.0	9.0	112.0	0.0	.	522	.	.	Atlas-SNP
AIRE	326	hgsc.bcm.edu	hg19	21	45709596	45709596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	AIRE,NS,carcinoma,0,1	AIRE	NM_000383	exon6	c.G709A	p.E237K	AAGTTCGAAGACT	.	132.0	27.0	159.0	1.0	.	61	.	.	Atlas-SNP
PCNT	5116	hgsc.bcm.edu	hg19	21	47754602	47754602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCNT	NM_006031	exon3	c.G559T	p.V187F	TTCACAGTCAGTG	.	319.0	38.0	309.0	0.0	.	283	.	.	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18347690	18347690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MICAL3	NM_001136004	exon23	c.G2952A	p.V984V	GCTGGCCACGGCG	.	148.0	29.0	129.0	0.0	.	53	.	.	Atlas-SNP
SEC14L4	284904	hgsc.bcm.edu	hg19	22	30899672	30899672	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEC14L4	NM_001161368	exon2	c.G122A	p.W41X	CGCAGCCAGCGCA	.	72.0	13.0	62.0	0.0	.	43	.	.	Atlas-SNP
EIF3D	8664	hgsc.bcm.edu	hg19	22	36920731	36920731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	EIF3D	NM_003753	exon4	c.A218G	p.H73R	TCCTCATGGAAAT	.	210.0	42.0	147.0	0.0	.	37	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42606358	42606358	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	TCF20	NM_181492	exon1	c.G4954C	p.A1652P	CCTCAGCATTGAT	.	326.0	34.0	317.0	0.0	.	164	.	.	Atlas-SNP
GPM6B	2824	hgsc.bcm.edu	hg19	X	13801604	13801604	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	GPM6B	NM_001001995	exon4	c.G405A	p.A135A	AAAGGACGCAATT	.	210.0	29.0	209.0	0.0	.	46	.	.	Atlas-SNP
MOSPD2	158747	hgsc.bcm.edu	hg19	X	14910893	14910893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MOSPD2	NM_152581	exon3	c.A128G	p.D43G	AACAAGATGATAA	.	177.0	25.0	179.0	0.0	.	46	.	.	Atlas-SNP
RAI2	10742	hgsc.bcm.edu	hg19	X	17818831	17818831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RAI2	NM_001172739	exon3	c.T1300C	p.S434P	CCTGGGACTCGCC	.	58.0	12.0	58.0	0.0	.	66	.	.	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	hg19	X	26212302	26212302	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAGEB6	NM_173523	exon2	c.C339A	p.G113G	CACTGGCTCTCCT	.	215.0	59.0	192.0	0.0	.	91	.	.	Atlas-SNP
UBA1	7317	hgsc.bcm.edu	hg19	X	47062208	47062208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	UBA1	NM_153280	exon11	c.A1228G	p.M410V	GAAGTCATGAAGG	.	102.0	17.0	84.0	0.0	.	89	.	.	Atlas-SNP
CCDC22	28952	hgsc.bcm.edu	hg19	X	49103272	49103272	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCDC22	NM_014008	exon7	c.C795T	p.A265A	TGGGGCCCCCATA	.	33.0	8.0	45.0	0.0	.	69	.	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	hg19	X	50037910	50037910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CCNB3	NM_033031	exon4	c.G252C	p.E84D	TAAAGAGTTTGTA	.	191.0	38.0	213.0	0.0	.	367	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50345797	50345797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SHROOM4	NM_020717	exon7	c.T3778C	p.F1260L	GCGAAAAGTGCTG	.	92.0	19.0	152.0	0.0	.	171	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53563161	53563161	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	HUWE1	NM_031407	exon80	c.C12478G	p.L4160V	CCAGCAGATAAAC	.	253.0	56.0	294.0	0.0	.	724	.	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54823434	54823434	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	NM_198510	exon2	c.C198T	p.A66A	TTCATGGGCTTCA	.	342.0	14.0	333.0	0.0	.	.	.	.	Atlas-SNP
SPIN4	139886	hgsc.bcm.edu	hg19	X	62570078	62570078	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SPIN4	NM_001012968	exon1	c.T621C	p.H207H	TTTGGCATGCTCC	.	192.0	44.0	239.0	0.0	.	29	.	.	Atlas-SNP
FOXO4	4303	hgsc.bcm.edu	hg19	X	70320820	70320820	+	Missense_Mutation	SNP	G	G	A	rs367715683	bycluster	TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FOXO4	NM_005938	exon2	c.G740A	p.R247H	GAAACCGTGAAGA	.	116.0	30.0	140.0	0.0	.	60	.	.	Atlas-SNP
CYSLTR1	10800	hgsc.bcm.edu	hg19	X	77528233	77528233	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CYSLTR1	NM_006639	exon3	c.A1011G	p.V337V	AAACTATACTTTA	.	122.0	22.0	166.0	0.0	.	59	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83129239	83129239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CYLC1	NM_021118	exon4	c.A1523G	p.D508G	AGAAAGATATCAA	.	92.0	27.0	142.0	0.0	.	272	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91133861	91133861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PCDH11X	NM_001168363	exon2	c.G2622C	p.K874N	GAAGAAGAAGCAT	.	455.0	94.0	502.0	1.0	.	714	.	.	Atlas-SNP
ARL13A	392509	hgsc.bcm.edu	hg19	X	100240896	100240896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ARL13A	NM_001162490	exon4	c.C371A	p.P124H	GGAAACCCATCTT	.	53.0	12.0	65.0	0.0	.	7	.	.	Atlas-SNP
NRK	203447	hgsc.bcm.edu	hg19	X	105179196	105179196	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	NRK	NM_198465	exon21	c.A3534G	p.S1178S	GGAATCACCTAAG	.	94.0	12.0	104.0	0.0	.	321	.	.	Atlas-SNP
MORC4	79710	hgsc.bcm.edu	hg19	X	106185319	106185319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MORC4	NM_001085354	exon16	c.G2509T	p.A837S	ATTCAGCTTGGCG	.	119.0	26.0	181.0	0.0	.	155	.	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117752606	117752606	+	Missense_Mutation	SNP	A	A	G	rs112023398		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	DOCK11	NM_144658	exon31	c.A3386G	p.D1129G	TTCAGGACAATTA	.	256.0	57.0	325.0	0.0	.	185	.	A|0.500;G|0.500	Atlas-SNP
ZNF280C	55609	hgsc.bcm.edu	hg19	X	129349772	129349772	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	ZNF280C	NM_017666	exon14	c.A1831T	p.N611Y	TTATGTTCTTCAA	.	78.0	14.0	82.0	0.0	.	63	.	.	Atlas-SNP
FRMD7	90167	hgsc.bcm.edu	hg19	X	131212020	131212020	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FRMD7	NM_194277	exon12	c.C2025T	p.A675A	GATTCTGGCCATG	.	346.0	49.0	433.0	0.0	.	69	.	.	Atlas-SNP
RBMX	27316	hgsc.bcm.edu	hg19	X	135957309	135957309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RBMX	NM_001164803	exon6	c.T476C	p.V159A	ATCACGACCATAT	.	141.0	23.0	183.0	0.0	.	149	.	.	Atlas-SNP
MAMLD1	10046	hgsc.bcm.edu	hg19	X	149638231	149638231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	MAMLD1	NM_005491	exon3	c.T386C	p.L129S	AGTCATTACTGCT	.	141.0	19.0	130.0	0.0	.	263	.	.	Atlas-SNP
IRAK1	3654	hgsc.bcm.edu	hg19	X	153284220	153284220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	IRAK1	NM_001569	exon5	c.G559A	p.V187M	GGGACACTGAGCT	.	192.0	28.0	190.0	0.0	.	107	.	.	Atlas-SNP
FLNA	2316	hgsc.bcm.edu	hg19	X	153580981	153580981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	FLNA	NM_001110556	exon40	c.C6442A	p.R2148S	CCCGACGCCTGCG	.	162.0	28.0	228.0	0.0	.	373	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13267	13267	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	.	ENST00000361567	exon1	c.G931A	p.G311X	CAACTAGGACTCA	.	14.0	11.0	48.0	0.0	.	.	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85972935	85972935	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CDHR1	NM_001171971	exon16	c.1870delT	p.S624fs	.	.	163.0	54.0	155.0	0.0	.	122	.	.	Atlas-Indel,Pindel
PRKCB	5579	hgsc.bcm.edu	hg19	16	24202416	24202416	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PRKCB	NM_212535	exon16	c.1727delT	p.M576fs	.	.	97.0	29.0	118.0	0.0	.	383	.	.	Atlas-Indel,Pindel
CDH15	1013	hgsc.bcm.edu	hg19	16	89256907	89256907	+	Splice_Site	DEL	G	G	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CDH15	NM_004933	exon8	c.1232+2G>-	.	.	.	35.0	14.0	38.0	0.0	.	54	.	.	Atlas-Indel,Pindel
CACNA1B	774	hgsc.bcm.edu	hg19	9	140880973	140880973	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	CACNA1B	NM_001243812	exon14	c.1877delT	p.L626fs	.	.	183.0	62.0	165.0	0.0	.	266	.	.	Atlas-Indel,Pindel
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110401347	110401347	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	PKHD1L1	NM_177531	exon8	c.662delG	p.G221fs	.	.	142.0	26.0	130.0	0.0	.	522	.	.	Atlas-Indel,Pindel
RPS9	6203	hgsc.bcm.edu	hg19	19	54705416	54705416	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	RPS9	NM_001013	exon3	c.158delT	p.I53fs	.	.	122.0	36.0	71.0	0.0	.	27	.	.	Atlas-Indel,Pindel
SEMA6A	57556	hgsc.bcm.edu	hg19	5	115838016	115838016	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A3A9-01A-11D-A25V-10	TCGA-DD-A3A9-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	96517058-18d2-4847-8085-768ca8aa1565	790941e2-4315-4425-9eeb-9b3ae2377bcb	.	SEMA6A	NM_020796	exon3	c.109delC	p.Q37fs	.	.	323.0	53.0	296.0	0.0	.	93	.	.	Pindel
